organic compounds
1,2;5,6-Di-O-isopropylidene-3-C-nitromethyl-α-D-allofuranose
aNew Drug Reseach & Development Center, Zhengzhou University, Zhengzhou 450001, People's Republic of China
*Correspondence e-mail: zqr409@126.com
The molecule of the title compound, C13H21NO8, consists of two methylenedioxy rings and one tetrahydrofuran ring. In the crystal, intermolecular O—H⋯O hydrogen bonds link the molecules into helical chains running along the 61 screw axis. Weak intermolecular C—H⋯O hydrogen bonds help to stabilize the crystal packing. Voids of 245 Å3 per occur.
Related literature
For details of the synthesis, see: Saito et al. (2002). For recent studies of the biological activity of azasugars, see: Loiseleur et al. (2007); Rahman et al. (2008).
Experimental
Crystal data
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Refinement
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Data collection: R-AXIS-IV Software (Rigaku, 1997); cell R-AXIS-IV Software; data reduction: R-AXIS-IV Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: TEXSAN (Molecular Structure Corporation, 1992); software used to prepare material for publication: TEXSAN.
Supporting information
10.1107/S1600536811017314/cv5090sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811017314/cv5090Isup2.hkl
All reagents and solvents were used as obtained without further purification. 1,2;5,6-di-O-isopropylidene-3-C-(nitromethyl)- α-D-allofuranose was synthesized from 1,2;5,6-di-O-isopropylidene-3-carbonyl-α-D-glucofuranose as described previously by Saito et al. (2002), whose starting material was D-glucose. To a solution of 1,2;5,6-di-O-isopropylidene-3-carbonyl -α-D-Glucofuranose (7.0 g, 27 mmol) in tetrahydrofuran (50 ml) was added CH3NO2 (10.5 ml) and potassium fluoride (3.0 g).The mixture was stirred at room temperature for 6 h. The reaction mixture was then concentrated in vacuo and extracted with water and EtOAc, dried (Na2SO4), and evaporated. The residue was recrystalied in CH3OH to yield the title compound. Crystals suitable for X-ray analysis were grown by slow evaporation from methanol at room temperature for two weeks. Rf = 0.7 (CHCl3/EtOAc, 7:3); mp: 110–111°C, [α]20D = +96° (c, 1.0, CH3OH); 1H NMR (400 MHz, CDCl3) σ: 5.85(1H, d, J = 3.6 Hz), 4.97 (1H, d, J = 12 Hz), 4.89 (1H, d, J = 3.6 Hz), 4.49 (1H, d, J = 12 Hz), 4.13 (1H, m), 4.01(1H,m), 3.95 (1H, m), 3.89 (1H, d, J = 8.8), 3.27 (1H, s), 1.61 (3H, s), 1.47 (3H, s), 1.39 (3H, s), 1.36 (3H, s); 13C NMR (100 MHz, CDCl3) σ: 113.3, 110.4, 103.7, 81.7, 79.8, 78.5, 77.6, 72.9, 67.9, 26.6, 26.5, 26.5, 25.0.
Atom H3E was located on a difference map and isotropically refined. C-bound H atoms were placed geometrically and treated as riding on their parent atoms with C—H are 0.96 Å (methylene) or 0.93 Å (aromatic), and Uiso(H) =1.2Ueq(C). In the absence of any significant anomalous scatterers in the molecule, attempts to confirm the
by of the in the presence of 1468 sets of Friedel equivalents led to an inconclusive value of 10 (10). Therefore, the Friedel pairs were merged before the final and the was assigned to correspond with that of the known chiral centres in a precursor molecule, which remained unchanged during the synthesis of the title compound. The porous crystal packing exhibits voids of 245 Å3.Data collection: R-AXIS-IV Software (Rigaku, 1997); cell
R-AXIS-IV Software (Rigaku, 1997); data reduction: R-AXIS-IV Software (Rigaku, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: TEXSAN (Molecular Structure Corporation, 1992); software used to prepare material for publication: TEXSAN (Molecular Structure Corporation, 1992).Fig. 1. The molecular structure of (I) showing the atomic numbering and 30% probability displacement ellipsoids. H atoms omitted for clarity. | |
Fig. 2. Packing diagram. |
C13H21NO8 | Dx = 1.270 Mg m−3 |
Mr = 319.31 | Melting point = 383–384 K |
Hexagonal, P61 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 61 | Cell parameters from 398 reflections |
a = 13.2581 (19) Å | θ = 2–25.1° |
c = 16.462 (3) Å | µ = 0.11 mm−1 |
V = 2506.0 (7) Å3 | T = 291 K |
Z = 6 | Prismatic, colourless |
F(000) = 1020 | 0.24 × 0.20 × 0.20 mm |
Rigaku R-AXIS-IV diffractometer | 1612 independent reflections |
Radiation source: fine-focus sealed tube | 1534 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.047 |
Detector resolution: 0 pixels mm-1 | θmax = 25.5°, θmin = 1.8° |
Oscillation frames scans | h = −13→16 |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −16→0 |
Tmin = 0.975, Tmax = 0.979 | l = −19→19 |
8380 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.061 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.164 | w = 1/[σ2(Fo2) + (0.0962P)2 + 1.0744P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max < 0.001 |
1612 reflections | Δρmax = 0.43 e Å−3 |
205 parameters | Δρmin = −0.26 e Å−3 |
1 restraint | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.008 (2) |
C13H21NO8 | Z = 6 |
Mr = 319.31 | Mo Kα radiation |
Hexagonal, P61 | µ = 0.11 mm−1 |
a = 13.2581 (19) Å | T = 291 K |
c = 16.462 (3) Å | 0.24 × 0.20 × 0.20 mm |
V = 2506.0 (7) Å3 |
Rigaku R-AXIS-IV diffractometer | 1612 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 1534 reflections with I > 2σ(I) |
Tmin = 0.975, Tmax = 0.979 | Rint = 0.047 |
8380 measured reflections |
R[F2 > 2σ(F2)] = 0.061 | 1 restraint |
wR(F2) = 0.164 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | Δρmax = 0.43 e Å−3 |
1612 reflections | Δρmin = −0.26 e Å−3 |
205 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.2338 (3) | 0.7097 (4) | 0.2334 (2) | 0.0565 (10) | |
O2 | 0.0552 (3) | 0.6458 (3) | 0.1793 (2) | 0.0427 (8) | |
O3 | 0.0092 (2) | 0.5408 (3) | 0.0319 (2) | 0.0405 (7) | |
O4 | 0.3029 (3) | 0.6935 (3) | 0.1082 (2) | 0.0490 (9) | |
O5 | 0.1802 (3) | 0.4394 (3) | −0.0205 (3) | 0.0597 (11) | |
O6 | 0.3601 (3) | 0.4537 (4) | −0.0197 (3) | 0.0557 (9) | |
O7 | 0.0437 (7) | 0.7865 (7) | −0.0252 (4) | 0.127 (3) | |
O8 | 0.0234 (7) | 0.6912 (7) | −0.1261 (4) | 0.131 (3) | |
N1 | 0.0764 (5) | 0.7349 (5) | −0.0646 (3) | 0.0639 (13) | |
C1 | 0.2559 (4) | 0.7508 (4) | 0.1523 (3) | 0.0472 (12) | |
H1A | 0.3068 | 0.8355 | 0.1502 | 0.057* | |
C2 | 0.1347 (4) | 0.7135 (4) | 0.1170 (3) | 0.0417 (10) | |
H2A | 0.1263 | 0.7800 | 0.1005 | 0.050* | |
C3 | 0.1227 (4) | 0.6337 (4) | 0.0451 (3) | 0.0358 (9) | |
C4 | 0.2095 (3) | 0.5932 (4) | 0.0705 (3) | 0.0362 (10) | |
H4A | 0.1721 | 0.5317 | 0.1114 | 0.043* | |
C5 | 0.2641 (4) | 0.5535 (5) | 0.0066 (3) | 0.0445 (11) | |
H5A | 0.2918 | 0.6081 | −0.0392 | 0.053* | |
C6 | 0.3605 (5) | 0.5349 (5) | 0.0379 (3) | 0.0514 (12) | |
H6A | 0.4347 | 0.6070 | 0.0381 | 0.062* | |
H6B | 0.3438 | 0.5025 | 0.0923 | 0.062* | |
C7 | 0.1610 (4) | 0.7012 (5) | −0.0346 (3) | 0.0496 (12) | |
H7A | 0.2360 | 0.7709 | −0.0268 | 0.059* | |
H7B | 0.1703 | 0.6537 | −0.0754 | 0.059* | |
C8 | 0.1192 (4) | 0.6842 (5) | 0.2544 (3) | 0.0463 (12) | |
C9 | 0.0671 (6) | 0.5833 (6) | 0.3133 (4) | 0.0650 (15) | |
H9A | 0.0672 | 0.5174 | 0.2892 | 0.097* | |
H9B | −0.0114 | 0.5635 | 0.3258 | 0.097* | |
H9C | 0.1125 | 0.6050 | 0.3623 | 0.097* | |
C10 | 0.1218 (6) | 0.7930 (6) | 0.2860 (4) | 0.0693 (17) | |
H10A | 0.1542 | 0.8528 | 0.2453 | 0.104* | |
H10B | 0.1689 | 0.8196 | 0.3341 | 0.104* | |
H10C | 0.0440 | 0.7755 | 0.2986 | 0.104* | |
C11 | 0.2428 (4) | 0.3839 (5) | −0.0501 (4) | 0.0552 (13) | |
C12 | 0.1872 (7) | 0.2647 (6) | −0.0156 (6) | 0.093 (2) | |
H12A | 0.1886 | 0.2690 | 0.0426 | 0.139* | |
H12B | 0.2291 | 0.2269 | −0.0332 | 0.139* | |
H12C | 0.1080 | 0.2210 | −0.0340 | 0.139* | |
C13 | 0.2482 (6) | 0.3881 (7) | −0.1415 (4) | 0.0729 (19) | |
H13A | 0.2860 | 0.4677 | −0.1592 | 0.109* | |
H13B | 0.1707 | 0.3469 | −0.1632 | 0.109* | |
H13C | 0.2915 | 0.3523 | −0.1602 | 0.109* | |
H3E | −0.017 (6) | 0.497 (6) | 0.077 (5) | 0.067 (19)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0408 (19) | 0.077 (3) | 0.0453 (19) | 0.0249 (17) | −0.0092 (15) | −0.0111 (18) |
O2 | 0.0312 (16) | 0.0491 (19) | 0.0426 (17) | 0.0161 (15) | −0.0026 (13) | −0.0029 (14) |
O3 | 0.0244 (15) | 0.0419 (17) | 0.0460 (17) | 0.0098 (14) | −0.0045 (13) | 0.0004 (15) |
O4 | 0.0269 (16) | 0.057 (2) | 0.054 (2) | 0.0135 (14) | −0.0040 (14) | −0.0109 (16) |
O5 | 0.0323 (17) | 0.066 (2) | 0.075 (2) | 0.0197 (16) | −0.0017 (17) | −0.028 (2) |
O6 | 0.045 (2) | 0.071 (2) | 0.059 (2) | 0.0357 (19) | 0.0046 (17) | −0.0059 (19) |
O7 | 0.193 (8) | 0.185 (7) | 0.089 (4) | 0.159 (7) | −0.029 (4) | −0.013 (5) |
O8 | 0.173 (6) | 0.184 (7) | 0.094 (4) | 0.132 (6) | −0.057 (5) | −0.031 (5) |
N1 | 0.095 (4) | 0.069 (3) | 0.044 (3) | 0.053 (3) | −0.006 (3) | 0.003 (2) |
C1 | 0.033 (2) | 0.041 (3) | 0.056 (3) | 0.010 (2) | −0.005 (2) | −0.010 (2) |
C2 | 0.037 (2) | 0.037 (2) | 0.047 (3) | 0.016 (2) | −0.003 (2) | 0.002 (2) |
C3 | 0.029 (2) | 0.034 (2) | 0.040 (2) | 0.0126 (18) | −0.0018 (17) | 0.0001 (18) |
C4 | 0.026 (2) | 0.040 (2) | 0.035 (2) | 0.0113 (18) | −0.0010 (17) | 0.0023 (18) |
C5 | 0.034 (2) | 0.054 (3) | 0.043 (2) | 0.020 (2) | 0.0006 (19) | −0.002 (2) |
C6 | 0.044 (3) | 0.067 (3) | 0.047 (3) | 0.031 (3) | 0.000 (2) | −0.008 (3) |
C7 | 0.041 (3) | 0.058 (3) | 0.046 (3) | 0.022 (2) | 0.003 (2) | 0.011 (2) |
C8 | 0.035 (2) | 0.055 (3) | 0.043 (3) | 0.018 (2) | −0.0061 (19) | −0.011 (2) |
C9 | 0.063 (4) | 0.077 (4) | 0.050 (3) | 0.031 (3) | −0.006 (3) | 0.003 (3) |
C10 | 0.067 (4) | 0.070 (4) | 0.067 (4) | 0.031 (3) | 0.004 (3) | −0.019 (3) |
C11 | 0.044 (3) | 0.064 (3) | 0.059 (3) | 0.027 (3) | 0.012 (2) | −0.010 (3) |
C12 | 0.093 (5) | 0.065 (4) | 0.106 (6) | 0.028 (4) | 0.033 (5) | 0.000 (4) |
C13 | 0.060 (3) | 0.105 (5) | 0.061 (3) | 0.047 (4) | −0.005 (3) | −0.023 (4) |
O1—C1 | 1.415 (7) | C5—C6 | 1.509 (7) |
O1—C8 | 1.424 (6) | C5—H5A | 0.9800 |
O2—C2 | 1.421 (6) | C6—H6A | 0.9700 |
O2—C8 | 1.441 (6) | C6—H6B | 0.9700 |
O3—C3 | 1.405 (5) | C7—H7A | 0.9700 |
O3—H3E | 0.90 (8) | C7—H7B | 0.9700 |
O4—C1 | 1.402 (6) | C8—C9 | 1.510 (8) |
O4—C4 | 1.428 (5) | C8—C10 | 1.517 (8) |
O5—C5 | 1.429 (6) | C9—H9A | 0.9600 |
O5—C11 | 1.441 (6) | C9—H9B | 0.9600 |
O6—C6 | 1.432 (6) | C9—H9C | 0.9600 |
O6—C11 | 1.445 (7) | C10—H10A | 0.9600 |
O7—N1 | 1.171 (8) | C10—H10B | 0.9600 |
O8—N1 | 1.204 (8) | C10—H10C | 0.9600 |
N1—C7 | 1.484 (7) | C11—C12 | 1.483 (10) |
C1—C2 | 1.540 (7) | C11—C13 | 1.506 (9) |
C1—H1A | 0.9800 | C12—H12A | 0.9600 |
C2—C3 | 1.542 (7) | C12—H12B | 0.9600 |
C2—H2A | 0.9800 | C12—H12C | 0.9600 |
C3—C7 | 1.525 (7) | C13—H13A | 0.9600 |
C3—C4 | 1.551 (6) | C13—H13B | 0.9600 |
C4—C5 | 1.513 (6) | C13—H13C | 0.9600 |
C4—H4A | 0.9800 | ||
C1—O1—C8 | 108.2 (4) | H6A—C6—H6B | 109.2 |
C2—O2—C8 | 106.1 (3) | N1—C7—C3 | 112.5 (4) |
C3—O3—H3E | 110 (4) | N1—C7—H7A | 109.1 |
C1—O4—C4 | 108.4 (3) | C3—C7—H7A | 109.1 |
C5—O5—C11 | 107.7 (4) | N1—C7—H7B | 109.1 |
C6—O6—C11 | 108.0 (4) | C3—C7—H7B | 109.1 |
O7—N1—O8 | 116.7 (7) | H7A—C7—H7B | 107.8 |
O7—N1—C7 | 123.3 (5) | O1—C8—O2 | 104.1 (4) |
O8—N1—C7 | 118.8 (6) | O1—C8—C9 | 109.1 (4) |
O4—C1—O1 | 110.1 (4) | O2—C8—C9 | 108.1 (4) |
O4—C1—C2 | 107.8 (4) | O1—C8—C10 | 110.0 (4) |
O1—C1—C2 | 104.5 (4) | O2—C8—C10 | 111.1 (5) |
O4—C1—H1A | 111.4 | C9—C8—C10 | 113.9 (5) |
O1—C1—H1A | 111.4 | C8—C9—H9A | 109.5 |
C2—C1—H1A | 111.4 | C8—C9—H9B | 109.5 |
O2—C2—C1 | 104.8 (4) | H9A—C9—H9B | 109.5 |
O2—C2—C3 | 109.3 (4) | C8—C9—H9C | 109.5 |
C1—C2—C3 | 104.0 (4) | H9A—C9—H9C | 109.5 |
O2—C2—H2A | 112.7 | H9B—C9—H9C | 109.5 |
C1—C2—H2A | 112.7 | C8—C10—H10A | 109.5 |
C3—C2—H2A | 112.7 | C8—C10—H10B | 109.5 |
O3—C3—C7 | 106.1 (4) | H10A—C10—H10B | 109.5 |
O3—C3—C2 | 114.6 (4) | C8—C10—H10C | 109.5 |
C7—C3—C2 | 111.6 (4) | H10A—C10—H10C | 109.5 |
O3—C3—C4 | 113.2 (3) | H10B—C10—H10C | 109.5 |
C7—C3—C4 | 110.4 (4) | O5—C11—O6 | 105.5 (4) |
C2—C3—C4 | 101.0 (3) | O5—C11—C12 | 108.0 (5) |
O4—C4—C5 | 106.5 (3) | O6—C11—C12 | 110.6 (6) |
O4—C4—C3 | 104.1 (3) | O5—C11—C13 | 110.4 (6) |
C5—C4—C3 | 119.9 (4) | O6—C11—C13 | 107.8 (5) |
O4—C4—H4A | 108.6 | C12—C11—C13 | 114.2 (6) |
C5—C4—H4A | 108.6 | C11—C12—H12A | 109.5 |
C3—C4—H4A | 108.6 | C11—C12—H12B | 109.5 |
O5—C5—C6 | 102.0 (4) | H12A—C12—H12B | 109.5 |
O5—C5—C4 | 109.4 (4) | C11—C12—H12C | 109.5 |
C6—C5—C4 | 114.2 (4) | H12A—C12—H12C | 109.5 |
O5—C5—H5A | 110.3 | H12B—C12—H12C | 109.5 |
C6—C5—H5A | 110.3 | C11—C13—H13A | 109.5 |
C4—C5—H5A | 110.3 | C11—C13—H13B | 109.5 |
O6—C6—C5 | 102.2 (4) | H13A—C13—H13B | 109.5 |
O6—C6—H6A | 111.3 | C11—C13—H13C | 109.5 |
C5—C6—H6A | 111.3 | H13A—C13—H13C | 109.5 |
O6—C6—H6B | 111.3 | H13B—C13—H13C | 109.5 |
C5—C6—H6B | 111.3 | ||
C4—O4—C1—O1 | 91.7 (4) | C11—O5—C5—C4 | −154.2 (4) |
C4—O4—C1—C2 | −21.7 (5) | O4—C4—C5—O5 | 166.8 (4) |
C8—O1—C1—O4 | −132.3 (4) | C3—C4—C5—O5 | −75.7 (5) |
C8—O1—C1—C2 | −16.8 (5) | O4—C4—C5—C6 | 53.2 (5) |
C8—O2—C2—C1 | 24.8 (5) | C3—C4—C5—C6 | 170.8 (4) |
C8—O2—C2—C3 | 135.8 (4) | C11—O6—C6—C5 | −29.7 (6) |
O4—C1—C2—O2 | 111.9 (4) | O5—C5—C6—O6 | 37.9 (5) |
O1—C1—C2—O2 | −5.2 (5) | C4—C5—C6—O6 | 155.7 (4) |
O4—C1—C2—C3 | −2.9 (5) | O7—N1—C7—C3 | 53.9 (9) |
O1—C1—C2—C3 | −119.9 (4) | O8—N1—C7—C3 | −112.8 (7) |
O2—C2—C3—O3 | 34.0 (5) | O3—C3—C7—N1 | 53.1 (6) |
C1—C2—C3—O3 | 145.5 (4) | C2—C3—C7—N1 | −72.5 (5) |
O2—C2—C3—C7 | 154.7 (4) | C4—C3—C7—N1 | 176.1 (4) |
C1—C2—C3—C7 | −93.8 (5) | C1—O1—C8—O2 | 32.4 (5) |
O2—C2—C3—C4 | −88.0 (4) | C1—O1—C8—C9 | 147.7 (4) |
C1—C2—C3—C4 | 23.5 (4) | C1—O1—C8—C10 | −86.7 (5) |
C1—O4—C4—C5 | 164.9 (4) | C2—O2—C8—O1 | −35.5 (5) |
C1—O4—C4—C3 | 37.3 (5) | C2—O2—C8—C9 | −151.4 (4) |
O3—C3—C4—O4 | −159.9 (4) | C2—O2—C8—C10 | 82.9 (5) |
C7—C3—C4—O4 | 81.3 (4) | C5—O5—C11—O6 | 15.2 (6) |
C2—C3—C4—O4 | −36.8 (4) | C5—O5—C11—C12 | 133.6 (6) |
O3—C3—C4—C5 | 81.4 (5) | C5—O5—C11—C13 | −100.9 (5) |
C7—C3—C4—C5 | −37.4 (5) | C6—O6—C11—O5 | 10.1 (6) |
C2—C3—C4—C5 | −155.6 (4) | C6—O6—C11—C12 | −106.5 (6) |
C11—O5—C5—C6 | −32.9 (5) | C6—O6—C11—C13 | 128.0 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3E···O6i | 0.90 (8) | 1.95 (8) | 2.814 (5) | 161 (7) |
C1—H1A···O3ii | 0.98 | 2.37 | 3.258 (4) | 151 |
C5—H5A···O1iii | 0.98 | 2.50 | 3.320 (4) | 141 |
Symmetry codes: (i) x−y, x, z+1/6; (ii) x−y+1, x+1, z+1/6; (iii) −x+y, −x+1, z−1/3. |
Experimental details
Crystal data | |
Chemical formula | C13H21NO8 |
Mr | 319.31 |
Crystal system, space group | Hexagonal, P61 |
Temperature (K) | 291 |
a, c (Å) | 13.2581 (19), 16.462 (3) |
V (Å3) | 2506.0 (7) |
Z | 6 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.24 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Rigaku R-AXIS-IV diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.975, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8380, 1612, 1534 |
Rint | 0.047 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.061, 0.164, 1.08 |
No. of reflections | 1612 |
No. of parameters | 205 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.43, −0.26 |
Computer programs: R-AXIS-IV Software (Rigaku, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), TEXSAN (Molecular Structure Corporation, 1992).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3E···O6i | 0.90 (8) | 1.95 (8) | 2.814 (5) | 161 (7) |
C1—H1A···O3ii | 0.98 | 2.37 | 3.258 (4) | 150.9 |
C5—H5A···O1iii | 0.98 | 2.50 | 3.320 (4) | 140.9 |
Symmetry codes: (i) x−y, x, z+1/6; (ii) x−y+1, x+1, z+1/6; (iii) −x+y, −x+1, z−1/3. |
Acknowledgements
We gratefully acknowledge financial support by the National Natural Science Foundation of China (grant No. 20572103).
References
Higashi, T. (1995). ABSCOR. Rigaku Corporation, Tokyo, Japan. Google Scholar
Loiseleur, O., Ritson, D., Mafalda, N., Crowley, P., Wagner, T. & Hanessian, S. (2007). J. Org. Chem. 72, 6353–6363. Web of Science CrossRef PubMed CAS Google Scholar
Molecular Structure Corporation (1992). TEXSAN. MSC, The Woodlands, Texas, USA. Google Scholar
Rahman, S. M. A., Seki, S., Obika, S., Yoshikawa, H., Miyashita, K. & Imanishi, T. (2008). J. Am. Chem. Soc. 130, 4886-4896. Web of Science PubMed CAS Google Scholar
Rigaku (1997). R-AXIS IV Software. Rigaku Corporation, Tokyo, Japan. Google Scholar
Saito, Y., Zevaco, T. A. & Agrofoglio, L. A. (2002). Tetrahedron, 58, 9593–9603. CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Azasugars were recently used as novel glycosyls to synthesize novel N-nucleosides (Loiseleur et al., 2007; Rahman et al., 2008). Herewith we report the synthesis and crystal structure of the title compound (I) prepared in enantiomerically pure form from 1,2;5,6-di-O-isopropylidene-3-carbonyl-α-D-glucofuranose (Saito et al., 2002) at room tempeature, whose raw material was D-glucose.
The molecule of (I) consists of two methylenedioxy rings and one tetrahydrofuran ring (Fig. 1). In (I), the tetrahydrofuran ring fuses with one methylenedioxy ring, having the cis arrangement at the ring junctions and giving a V-shaped molecule. The angles O1—C8—O2, O5—C11—O6, C9—C8—C10 and C12—C11—C13 around the two isopropylidenes are 104.1 (4), 105.5 (4), 113.9 (5) and 114.2 (6)°, respectively.
In the crystal structure, intermolecular O—H···O hydrogen bonds (Table 1) link the molecules into helical chains running along screw axis 61, and weak intermolecular C—H···O hydrogen bonds (Table 1) help to stabilize the crystal packing.