organic compounds
[(1,3-Benzothiazol-2-yl)aminocarbonyl]methyl piperidine-1-carbodithioate monohydrate
aDepartment of Organic Chemistry, the College of Chemistry, Xiangtan University, Hunan 411105, People's Republic of China, and bEnvironmental Engineering, Dongguan University of Technology, Guangdong 523808, People's Republic of China
*Correspondence e-mail: zhaohbhanlf@163.com
In the title compound, C15H17N3OS3·H2O, the piperidine ring has a chair conformation. The is stabilized by weak intermolecular N—H⋯O, O—H⋯N and O—H⋯O hydrogen-bonding interactions.
Related literature
For the biological activity of substituted N-benzothiazol-2-yl-amides, see: Patel & Shaikh (2010); Hou et al. (2006). For related structures, see: Wang et al. (2008).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811018460/fj2417sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811018460/fj2417Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811018460/fj2417Isup3.cml
H atoms were placed in calculated positions (C—H=0.93–0.97 Å, N—H=0.85 Å,O—H=0.91–0.92 Å) and refined in riding mode, with Uĩso~(H) = xU~eq~(C,N), where x =1.5 (O,N) and 1.2 for all other H atoms.
Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. A view of (I), with the atom-labeling scheme and 30% probability displacement ellipsoids. | |
Fig. 2. Packing of the title compound. Dashed lines indicate hydrogen bonds. |
C15H17N3OS3·H2O | F(000) = 776 |
Mr = 369.39 | Dx = 1.406 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 8358 reflections |
a = 10.6326 (3) Å | θ = 3.0–27.5° |
b = 12.0735 (3) Å | µ = 0.44 mm−1 |
c = 14.7824 (4) Å | T = 296 K |
β = 113.133 (2)° | Block, colorless |
V = 1745.08 (8) Å3 | 0.20 × 0.20 × 0.20 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 3992 independent reflections |
Radiation source: fine-focus sealed tube | 3497 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.020 |
ϕ and ω scans | θmax = 27.5°, θmin = 3.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | h = −12→13 |
Tmin = 0.918, Tmax = 0.918 | k = −14→15 |
15147 measured reflections | l = −19→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.095 | H-atom parameters constrained |
S = 1.11 | w = 1/[σ2(Fo2) + (0.0424P)2 + 0.6208P] where P = (Fo2 + 2Fc2)/3 |
3992 reflections | (Δ/σ)max < 0.001 |
202 parameters | Δρmax = 0.21 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
C15H17N3OS3·H2O | V = 1745.08 (8) Å3 |
Mr = 369.39 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.6326 (3) Å | µ = 0.44 mm−1 |
b = 12.0735 (3) Å | T = 296 K |
c = 14.7824 (4) Å | 0.20 × 0.20 × 0.20 mm |
β = 113.133 (2)° |
Bruker APEXII CCD area-detector diffractometer | 3992 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | 3497 reflections with I > 2σ(I) |
Tmin = 0.918, Tmax = 0.918 | Rint = 0.020 |
15147 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.095 | H-atom parameters constrained |
S = 1.11 | Δρmax = 0.21 e Å−3 |
3992 reflections | Δρmin = −0.30 e Å−3 |
202 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S3 | −0.11155 (5) | 0.39341 (3) | 0.39288 (3) | 0.04084 (12) | |
S2 | 0.14706 (5) | 0.19374 (3) | 0.16270 (3) | 0.04125 (12) | |
S1 | 0.34529 (6) | 0.24704 (5) | 0.36726 (3) | 0.05848 (15) | |
O1 | 0.00460 (15) | 0.32824 (10) | 0.26734 (10) | 0.0505 (3) | |
N3 | −0.14307 (15) | 0.20161 (10) | 0.46198 (10) | 0.0387 (3) | |
N1 | 0.37483 (17) | 0.30273 (14) | 0.20291 (11) | 0.0504 (4) | |
N2 | −0.02961 (10) | 0.18869 (7) | 0.35648 (7) | 0.0398 (3) | |
H3 | −0.0250 | 0.1209 | 0.3715 | 0.060* | |
C15 | −0.19188 (10) | 0.38955 (7) | 0.47513 (7) | 0.0390 (3) | |
C14 | −0.24377 (10) | 0.47707 (7) | 0.51145 (7) | 0.0524 (4) | |
H14 | −0.2375 | 0.5497 | 0.4927 | 0.063* | |
C13 | −0.3046 (2) | 0.45284 (17) | 0.57595 (18) | 0.0621 (5) | |
H13 | −0.3404 | 0.5099 | 0.6008 | 0.075* | |
C12 | −0.3132 (2) | 0.34427 (18) | 0.60443 (17) | 0.0607 (5) | |
H12 | −0.3539 | 0.3300 | 0.6486 | 0.073* | |
C11 | −0.2626 (2) | 0.25758 (15) | 0.56845 (15) | 0.0506 (4) | |
H11 | −0.2696 | 0.1852 | 0.5874 | 0.061* | |
C10 | −0.20087 (17) | 0.28022 (13) | 0.50311 (12) | 0.0381 (3) | |
C9 | −0.09440 (16) | 0.24949 (12) | 0.40459 (11) | 0.0344 (3) | |
C8 | 0.01508 (18) | 0.23052 (13) | 0.28907 (12) | 0.0389 (3) | |
C7 | 0.0712 (2) | 0.14189 (14) | 0.24244 (13) | 0.0450 (4) | |
H7A | −0.0025 | 0.0920 | 0.2054 | 0.054* | |
H7B | 0.1392 | 0.0992 | 0.2943 | 0.054* | |
C6 | 0.30123 (18) | 0.25403 (13) | 0.24634 (12) | 0.0401 (3) | |
C1 | 0.3334 (2) | 0.31304 (17) | 0.09552 (13) | 0.0524 (5) | |
H1A | 0.2466 | 0.2758 | 0.0618 | 0.063* | |
H1B | 0.4010 | 0.2776 | 0.0763 | 0.063* | |
C2 | 0.3200 (2) | 0.43266 (18) | 0.06582 (15) | 0.0607 (5) | |
H2A | 0.2454 | 0.4658 | 0.0785 | 0.073* | |
H2B | 0.2983 | 0.4380 | −0.0042 | 0.073* | |
C3 | 0.4502 (3) | 0.4956 (2) | 0.1215 (2) | 0.0794 (7) | |
H3A | 0.4357 | 0.5738 | 0.1057 | 0.095* | |
H3B | 0.5218 | 0.4697 | 0.1016 | 0.095* | |
C4 | 0.4948 (3) | 0.4796 (2) | 0.23209 (18) | 0.0701 (6) | |
H4A | 0.5832 | 0.5144 | 0.2661 | 0.084* | |
H4B | 0.4295 | 0.5156 | 0.2534 | 0.084* | |
C5 | 0.5044 (2) | 0.3595 (2) | 0.25880 (17) | 0.0632 (5) | |
H5A | 0.5774 | 0.3253 | 0.2449 | 0.076* | |
H5B | 0.5261 | 0.3520 | 0.3287 | 0.076* | |
O2 | 0.99835 (17) | 0.03537 (10) | 0.61071 (10) | 0.0591 (4) | |
H2'A | 0.9501 | 0.0735 | 0.5538 | 0.089* | |
H2'B | 1.0111 | 0.0822 | 0.6617 | 0.089* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S3 | 0.0527 (3) | 0.02621 (18) | 0.0499 (2) | 0.00354 (15) | 0.0270 (2) | 0.00531 (15) |
S2 | 0.0520 (3) | 0.0395 (2) | 0.0354 (2) | −0.00204 (17) | 0.02063 (18) | −0.00248 (15) |
S1 | 0.0800 (4) | 0.0582 (3) | 0.0310 (2) | 0.0053 (2) | 0.0152 (2) | 0.00416 (19) |
O1 | 0.0772 (9) | 0.0309 (6) | 0.0565 (8) | 0.0079 (6) | 0.0403 (7) | 0.0086 (5) |
N3 | 0.0505 (8) | 0.0279 (6) | 0.0419 (7) | −0.0021 (5) | 0.0225 (6) | 0.0002 (5) |
N1 | 0.0531 (9) | 0.0581 (9) | 0.0363 (7) | −0.0110 (7) | 0.0135 (7) | 0.0000 (7) |
N2 | 0.0581 (9) | 0.0250 (6) | 0.0431 (7) | 0.0033 (6) | 0.0273 (7) | 0.0030 (5) |
C15 | 0.0415 (8) | 0.0336 (8) | 0.0442 (8) | 0.0010 (6) | 0.0192 (7) | 0.0000 (6) |
C14 | 0.0612 (11) | 0.0352 (8) | 0.0684 (12) | 0.0057 (8) | 0.0336 (10) | −0.0015 (8) |
C13 | 0.0706 (13) | 0.0503 (11) | 0.0828 (15) | 0.0061 (9) | 0.0490 (12) | −0.0094 (10) |
C12 | 0.0674 (13) | 0.0575 (12) | 0.0762 (14) | −0.0045 (10) | 0.0487 (12) | −0.0074 (10) |
C11 | 0.0603 (11) | 0.0418 (9) | 0.0611 (11) | −0.0072 (8) | 0.0362 (10) | −0.0022 (8) |
C10 | 0.0407 (8) | 0.0330 (7) | 0.0426 (8) | −0.0021 (6) | 0.0185 (7) | −0.0021 (6) |
C9 | 0.0405 (8) | 0.0261 (7) | 0.0359 (7) | 0.0006 (6) | 0.0144 (6) | 0.0010 (5) |
C8 | 0.0495 (9) | 0.0318 (8) | 0.0386 (8) | 0.0030 (6) | 0.0209 (7) | 0.0021 (6) |
C7 | 0.0632 (11) | 0.0318 (8) | 0.0496 (9) | 0.0011 (7) | 0.0325 (9) | 0.0010 (7) |
C6 | 0.0515 (9) | 0.0328 (7) | 0.0343 (8) | 0.0058 (7) | 0.0151 (7) | 0.0012 (6) |
C1 | 0.0619 (12) | 0.0603 (11) | 0.0391 (9) | −0.0108 (9) | 0.0243 (8) | −0.0040 (8) |
C2 | 0.0705 (14) | 0.0633 (13) | 0.0498 (11) | 0.0025 (10) | 0.0252 (10) | 0.0052 (9) |
C3 | 0.0941 (19) | 0.0622 (14) | 0.0802 (16) | −0.0202 (13) | 0.0324 (14) | 0.0070 (12) |
C4 | 0.0686 (14) | 0.0641 (13) | 0.0749 (15) | −0.0181 (11) | 0.0252 (12) | −0.0150 (12) |
C5 | 0.0502 (11) | 0.0731 (14) | 0.0565 (12) | −0.0111 (10) | 0.0103 (9) | −0.0025 (11) |
O2 | 0.1018 (11) | 0.0269 (6) | 0.0487 (7) | 0.0058 (6) | 0.0297 (7) | 0.0001 (5) |
S3—C15 | 1.7395 (10) | C11—C10 | 1.392 (2) |
S3—C9 | 1.7486 (15) | C11—H11 | 0.9300 |
S2—C6 | 1.7757 (18) | C8—C7 | 1.517 (2) |
S2—C7 | 1.7828 (17) | C7—H7A | 0.9700 |
S1—C6 | 1.6624 (16) | C7—H7B | 0.9700 |
O1—C8 | 1.2163 (19) | C1—C2 | 1.500 (3) |
N3—C9 | 1.291 (2) | C1—H1A | 0.9700 |
N3—C10 | 1.394 (2) | C1—H1B | 0.9700 |
N1—C6 | 1.329 (2) | C2—C3 | 1.508 (3) |
N1—C5 | 1.468 (3) | C2—H2A | 0.9700 |
N1—C1 | 1.477 (2) | C2—H2B | 0.9700 |
N2—C8 | 1.3586 (18) | C3—C4 | 1.525 (3) |
N2—C9 | 1.3799 (17) | C3—H3A | 0.9700 |
N2—H3 | 0.8445 | C3—H3B | 0.9700 |
C15—C14 | 1.3936 | C4—C5 | 1.496 (3) |
C15—C10 | 1.3978 (18) | C4—H4A | 0.9700 |
C14—C13 | 1.377 (2) | C4—H4B | 0.9700 |
C14—H14 | 0.9300 | C5—H5A | 0.9700 |
C13—C12 | 1.391 (3) | C5—H5B | 0.9700 |
C13—H13 | 0.9300 | O2—H2'A | 0.9186 |
C12—C11 | 1.376 (3) | O2—H2'B | 0.9083 |
C12—H12 | 0.9300 | ||
C15—S3—C9 | 87.99 (6) | S2—C7—H7B | 108.6 |
C6—S2—C7 | 102.54 (8) | H7A—C7—H7B | 107.6 |
C9—N3—C10 | 109.94 (13) | N1—C6—S1 | 124.85 (14) |
C6—N1—C5 | 122.35 (16) | N1—C6—S2 | 113.75 (12) |
C6—N1—C1 | 124.96 (15) | S1—C6—S2 | 121.40 (10) |
C5—N1—C1 | 112.56 (16) | N1—C1—C2 | 110.48 (16) |
C8—N2—C9 | 124.72 (11) | N1—C1—H1A | 109.6 |
C8—N2—H3 | 123.5 | C2—C1—H1A | 109.6 |
C9—N2—H3 | 111.7 | N1—C1—H1B | 109.6 |
C14—C15—C10 | 121.23 (8) | C2—C1—H1B | 109.6 |
C14—C15—S3 | 128.8 | H1A—C1—H1B | 108.1 |
C10—C15—S3 | 109.98 (9) | C1—C2—C3 | 111.35 (19) |
C13—C14—C15 | 118.06 (9) | C1—C2—H2A | 109.4 |
C13—C14—H14 | 121.0 | C3—C2—H2A | 109.4 |
C15—C14—H14 | 121.0 | C1—C2—H2B | 109.4 |
C14—C13—C12 | 120.96 (16) | C3—C2—H2B | 109.4 |
C14—C13—H13 | 119.5 | H2A—C2—H2B | 108.0 |
C12—C13—H13 | 119.5 | C2—C3—C4 | 110.69 (19) |
C11—C12—C13 | 121.18 (18) | C2—C3—H3A | 109.5 |
C11—C12—H12 | 119.4 | C4—C3—H3A | 109.5 |
C13—C12—H12 | 119.4 | C2—C3—H3B | 109.5 |
C12—C11—C10 | 118.79 (17) | C4—C3—H3B | 109.5 |
C12—C11—H11 | 120.6 | H3A—C3—H3B | 108.1 |
C10—C11—H11 | 120.6 | C5—C4—C3 | 111.4 (2) |
C11—C10—N3 | 125.33 (15) | C5—C4—H4A | 109.3 |
C11—C10—C15 | 119.77 (14) | C3—C4—H4A | 109.3 |
N3—C10—C15 | 114.89 (13) | C5—C4—H4B | 109.3 |
N3—C9—N2 | 120.70 (13) | C3—C4—H4B | 109.3 |
N3—C9—S3 | 117.19 (12) | H4A—C4—H4B | 108.0 |
N2—C9—S3 | 122.09 (10) | N1—C5—C4 | 110.63 (18) |
O1—C8—N2 | 122.14 (14) | N1—C5—H5A | 109.5 |
O1—C8—C7 | 125.17 (15) | C4—C5—H5A | 109.5 |
N2—C8—C7 | 112.63 (13) | N1—C5—H5B | 109.5 |
C8—C7—S2 | 114.45 (12) | C4—C5—H5B | 109.5 |
C8—C7—H7A | 108.6 | H5A—C5—H5B | 108.1 |
S2—C7—H7A | 108.6 | H2'A—O2—H2'B | 107.2 |
C8—C7—H7B | 108.6 | ||
C9—S3—C15—C14 | 179.51 (6) | C15—S3—C9—N2 | −178.26 (14) |
C9—S3—C15—C10 | −0.94 (11) | C9—N2—C8—O1 | 2.2 (3) |
C10—C15—C14—C13 | −0.05 (14) | C9—N2—C8—C7 | −175.06 (14) |
S3—C15—C14—C13 | 179.45 (15) | O1—C8—C7—S2 | 8.9 (3) |
C15—C14—C13—C12 | 0.4 (3) | N2—C8—C7—S2 | −173.96 (12) |
C14—C13—C12—C11 | −0.7 (4) | C6—S2—C7—C8 | 71.97 (15) |
C13—C12—C11—C10 | 0.6 (3) | C5—N1—C6—S1 | −1.7 (3) |
C12—C11—C10—N3 | 178.85 (19) | C1—N1—C6—S1 | −177.38 (15) |
C12—C11—C10—C15 | −0.3 (3) | C5—N1—C6—S2 | 178.72 (16) |
C9—N3—C10—C11 | −179.96 (17) | C1—N1—C6—S2 | 3.1 (2) |
C9—N3—C10—C15 | −0.8 (2) | C7—S2—C6—N1 | −177.71 (13) |
C14—C15—C10—C11 | 0.00 (19) | C7—S2—C6—S1 | 2.73 (12) |
S3—C15—C10—C11 | −179.59 (14) | C6—N1—C1—C2 | 118.0 (2) |
C14—C15—C10—N3 | −179.20 (9) | C5—N1—C1—C2 | −58.0 (2) |
S3—C15—C10—N3 | 1.21 (17) | N1—C1—C2—C3 | 55.5 (2) |
C10—N3—C9—N2 | 178.87 (14) | C1—C2—C3—C4 | −53.5 (3) |
C10—N3—C9—S3 | 0.03 (19) | C2—C3—C4—C5 | 53.3 (3) |
C8—N2—C9—N3 | 174.61 (15) | C6—N1—C5—C4 | −118.4 (2) |
C8—N2—C9—S3 | −6.6 (2) | C1—N1—C5—C4 | 57.7 (2) |
C15—S3—C9—N3 | 0.55 (13) | C3—C4—C5—N1 | −54.9 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H3···O2i | 0.84 | 1.91 | 2.745 (2) | 170 |
O2—H2′A···N3ii | 0.92 | 2.04 | 2.920 (2) | 160 |
O2—H2′B···O1iii | 0.91 | 1.92 | 2.821 (2) | 169 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x+1, y, z; (iii) x+1, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C15H17N3OS3·H2O |
Mr | 369.39 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 10.6326 (3), 12.0735 (3), 14.7824 (4) |
β (°) | 113.133 (2) |
V (Å3) | 1745.08 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.44 |
Crystal size (mm) | 0.20 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2004) |
Tmin, Tmax | 0.918, 0.918 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15147, 3992, 3497 |
Rint | 0.020 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.095, 1.11 |
No. of reflections | 3992 |
No. of parameters | 202 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.21, −0.30 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H3···O2i | 0.844 | 1.910 | 2.745 (2) | 170 |
O2—H2'A···N3ii | 0.919 | 2.040 | 2.920 (2) | 160 |
O2—H2'B···O1iii | 0.908 | 1.923 | 2.821 (2) | 169 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x+1, y, z; (iii) x+1, −y+1/2, z+1/2. |
Acknowledgements
This work was supported by the Key Laboratory of Functional Organometallic Materials of the College of Hunan Province, Hengyang, Hunan, China.
References
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Substituted N-benzothiazol-2-yl-amides are an important class of heterocyclic compounds that exhibit a wide range of biological properties such as antimicrobial activity (Patel & Shaikh, 2010), antivirus infections (Hou et al., 2006). In this paper, the structure of 1-(dithiopiperidyl)-N-benzothiazole-2-yl-acetamide is reported.
The title compound (I) (Fig. 1) crystallizes in the centrosymmetric space group P21/c. One 1-(dithiopiperidyl)-N-benzothiazole-2-yl-acetamide molecule and a solvent water molecule in the asymmetric unit. The piperidine ring has a chair conformation; Crystal packing is stablized by N—H···O, O—H···N and O—H···O hydrogen bonds (Figs. 2 and Table 1).