organic compounds
(3aR,6S,7aR)-7a-Bromo-2-methylsulfonyl-1,2,3,6,7,7a-hexahydro-3a,6-epoxyisoindole
aDepartment of Physics, Arts and Sciences Faculty, Ondokuz Mayıs University, Samsun, TR 55139, Turkey, bDepartment of Chemistry, Faculty of Arts and Sciences, Nigde University, Nigde, TR 51240, Turkey, cDepartment of Chemistry, Emory University, Atlanta, GA 30322, USA, and dDepartment of Chemistry, Faculty of Arts and Science, Mersin University, Mersin, TR 33343, Turkey
*Correspondence e-mail: hakan.arslan.acad@gmail.com
In the title compound, C9H12BrNO3S, the two tetrahydrofuran rings adopt envelope conformations, the pyrrolidine ring adopts a half-chair conformation and the six-membered ring is in a boat conformation. In the crystal, weak intermolecular C—H⋯O hydrogen bonds link the molecules into R22(8) and R22(14) rings along the b-axis direction.
Related literature
For a related structure, see: Koşar et al. (2006). For uses of in medicine, in particular the treatment of bacterial infection, see: Kleemann et al. (1999); Cremlyn (1996). For the synthesis of see: Anderson (1979). For thermal intramolecular Diels–Alder reaction of furans (IMDAF), see: Demircan & Parsons (2002); Arslan et al. (2008). A mesyl group in the structure is normally chosen as a protective group for nitrogen, but at the same time accelerates the cycloaddition process for IMDAF, see: Greene (1981); Choony et al. (1997). For standard bond lengths, see: Allen et al. (1987). For puckering parameters, see: Cremer & Pople (1975). For graph-set notation, see: Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2002); cell X-AREA; data reduction: X-RED32 (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008), OLEX2, publCIF (Westrip, 2010) and Mercury (Macrae et al., 2006).
Supporting information
10.1107/S1600536811015959/hg5029sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811015959/hg5029Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811015959/hg5029Isup3.cml
N-(2-bromoprop-2-en-1-yl)-N-(2-furylmethyl)methanesulfonamide, II, (1 g, 3.4 mmol) was stirred in water (25 ml) at 372 K for two days (Fig. 3). The reaction was stirred and monitored by thin layer
until no further cycloadditon observed. The mixture was poured into ethylacetate (25 ml) and aqueous phase was washed with excess of ethyl acetate (2 x 25 ml). Combined organic phases was dried on magnesium sulfate and filtered off. The solvent was then removed under reduced pressure. The residue was subjected to flash to afford the title compound, (3aR,6S,7aR)-7a-bromo-2-(methylsulfonyl)-1,2,3,6,7,7a-hexahydro-3a,6-epoxyisoindole, I, with 0.74 g, 74% yield as light brown crystals.H atoms were positioned geometrically and treated using a riding model, fixing the bond lengths at 0.96, 0.97, 0.98 and 0.93 Å for CH3, CH2, CH and CH(aromatic), respectively. The displacement parameters of the H atoms were constrained with Uiso(H) = 1.2Ueq (aromatic, methylene or methine C) or 1.5Ueq (methyl C).
Data collection: X-AREA (Stoe & Cie, 2002); cell
X-AREA (Stoe & Cie, 2002); data reduction: X-RED32 (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009), publCIF (Westrip, 2010) and Mercury (Macrae et al., 2006).C9H12BrNO3S | Z = 2 |
Mr = 294.17 | F(000) = 296 |
Triclinic, P1 | Dx = 1.765 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 5.9478 (7) Å | Cell parameters from 8163 reflections |
b = 9.5869 (10) Å | θ = 2.1–27.5° |
c = 10.7775 (11) Å | µ = 3.89 mm−1 |
α = 114.307 (8)° | T = 296 K |
β = 90.481 (9)° | Block, light-brown |
γ = 97.812 (9)° | 0.38 × 0.23 × 0.08 mm |
V = 553.46 (10) Å3 |
Stoe IPDS 2 diffractometer | 2293 independent reflections |
Radiation source: fine-focus sealed tube | 1920 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.082 |
Detector resolution: 6.67 pixels mm-1 | θmax = 26.5°, θmin = 2.1° |
rotation method scans | h = −7→7 |
Absorption correction: integration (X-RED; Stoe & Cie, 2001) | k = −12→12 |
Tmin = 0.223, Tmax = 0.682 | l = −13→13 |
8163 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.107 | H-atom parameters constrained |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0452P)2 + 0.3277P] where P = (Fo2 + 2Fc2)/3 |
2293 reflections | (Δ/σ)max < 0.001 |
137 parameters | Δρmax = 0.86 e Å−3 |
0 restraints | Δρmin = −0.44 e Å−3 |
C9H12BrNO3S | γ = 97.812 (9)° |
Mr = 294.17 | V = 553.46 (10) Å3 |
Triclinic, P1 | Z = 2 |
a = 5.9478 (7) Å | Mo Kα radiation |
b = 9.5869 (10) Å | µ = 3.89 mm−1 |
c = 10.7775 (11) Å | T = 296 K |
α = 114.307 (8)° | 0.38 × 0.23 × 0.08 mm |
β = 90.481 (9)° |
Stoe IPDS 2 diffractometer | 2293 independent reflections |
Absorption correction: integration (X-RED; Stoe & Cie, 2001) | 1920 reflections with I > 2σ(I) |
Tmin = 0.223, Tmax = 0.682 | Rint = 0.082 |
8163 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.107 | H-atom parameters constrained |
S = 1.10 | Δρmax = 0.86 e Å−3 |
2293 reflections | Δρmin = −0.44 e Å−3 |
137 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.7380 (6) | 0.3068 (4) | 0.6385 (4) | 0.0348 (8) | |
C2 | 0.8248 (7) | 0.1507 (5) | 0.5964 (4) | 0.0438 (9) | |
H2A | 0.9770 | 0.1543 | 0.5651 | 0.053* | |
H2B | 0.7234 | 0.0668 | 0.5264 | 0.053* | |
C3 | 0.8218 (9) | 0.1363 (5) | 0.7338 (5) | 0.0553 (11) | |
H3 | 0.9189 | 0.0654 | 0.7421 | 0.066* | |
C4 | 0.5780 (9) | 0.1066 (6) | 0.7645 (5) | 0.0577 (12) | |
H4 | 0.4995 | 0.0132 | 0.7588 | 0.069* | |
C5 | 0.4970 (8) | 0.2380 (6) | 0.8007 (4) | 0.0502 (10) | |
H5 | 0.3516 | 0.2569 | 0.8268 | 0.060* | |
C6 | 0.6907 (6) | 0.3509 (4) | 0.7910 (4) | 0.0369 (8) | |
C7 | 0.7123 (7) | 0.5249 (5) | 0.8604 (4) | 0.0441 (9) | |
H7A | 0.5645 | 0.5578 | 0.8801 | 0.053* | |
H7B | 0.8083 | 0.5663 | 0.9446 | 0.053* | |
C8 | 0.9051 (7) | 0.4468 (4) | 0.6497 (4) | 0.0429 (9) | |
H8A | 1.0585 | 0.4388 | 0.6744 | 0.051* | |
H8B | 0.9039 | 0.4590 | 0.5647 | 0.051* | |
O2 | 0.7873 (6) | 0.8440 (4) | 0.8963 (4) | 0.0738 (11) | |
Br1 | 0.46555 (8) | 0.29243 (5) | 0.52887 (5) | 0.05052 (17) | |
N1 | 0.8186 (6) | 0.5743 (4) | 0.7581 (3) | 0.0443 (8) | |
O1 | 0.8850 (5) | 0.2972 (3) | 0.8292 (3) | 0.0484 (7) | |
C9 | 1.2003 (8) | 0.7824 (6) | 0.8803 (5) | 0.0592 (12) | |
H9A | 1.2643 | 0.8899 | 0.9136 | 0.089* | |
H9B | 1.2967 | 0.7208 | 0.8158 | 0.089* | |
H9C | 1.1881 | 0.7529 | 0.9552 | 0.089* | |
O3 | 0.9632 (6) | 0.7717 (4) | 0.6764 (4) | 0.0633 (9) | |
S1 | 0.92989 (17) | 0.75291 (11) | 0.80041 (11) | 0.0423 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0378 (18) | 0.034 (2) | 0.0349 (19) | 0.0078 (15) | 0.0081 (15) | 0.0151 (15) |
C2 | 0.044 (2) | 0.030 (2) | 0.053 (2) | 0.0081 (16) | 0.0068 (18) | 0.0124 (17) |
C3 | 0.075 (3) | 0.036 (2) | 0.059 (3) | 0.012 (2) | −0.007 (2) | 0.022 (2) |
C4 | 0.083 (3) | 0.044 (3) | 0.047 (2) | −0.008 (2) | 0.002 (2) | 0.024 (2) |
C5 | 0.055 (2) | 0.055 (3) | 0.039 (2) | −0.003 (2) | 0.0134 (19) | 0.021 (2) |
C6 | 0.0406 (19) | 0.038 (2) | 0.0328 (19) | 0.0069 (15) | 0.0043 (15) | 0.0146 (16) |
C7 | 0.052 (2) | 0.036 (2) | 0.041 (2) | 0.0093 (17) | 0.0121 (17) | 0.0124 (17) |
C8 | 0.052 (2) | 0.031 (2) | 0.043 (2) | 0.0058 (17) | 0.0165 (18) | 0.0135 (17) |
O2 | 0.066 (2) | 0.0383 (19) | 0.098 (3) | 0.0125 (16) | 0.012 (2) | 0.0082 (18) |
Br1 | 0.0549 (3) | 0.0520 (3) | 0.0448 (2) | 0.01178 (18) | −0.00663 (17) | 0.01939 (19) |
N1 | 0.057 (2) | 0.0296 (18) | 0.0427 (19) | 0.0044 (14) | 0.0115 (15) | 0.0122 (14) |
O1 | 0.0595 (18) | 0.0385 (16) | 0.0455 (16) | 0.0081 (13) | −0.0092 (13) | 0.0159 (13) |
C9 | 0.051 (2) | 0.067 (3) | 0.058 (3) | 0.002 (2) | −0.011 (2) | 0.027 (3) |
O3 | 0.082 (2) | 0.053 (2) | 0.067 (2) | −0.0026 (16) | −0.0173 (18) | 0.0413 (18) |
S1 | 0.0465 (6) | 0.0280 (5) | 0.0509 (6) | 0.0065 (4) | −0.0034 (4) | 0.0148 (4) |
C1—C8 | 1.519 (5) | C6—C7 | 1.507 (6) |
C1—C2 | 1.538 (5) | C7—N1 | 1.482 (5) |
C1—C6 | 1.558 (5) | C7—H7A | 0.9700 |
C1—Br1 | 1.953 (4) | C7—H7B | 0.9700 |
C2—C3 | 1.542 (6) | C8—N1 | 1.460 (5) |
C2—H2A | 0.9700 | C8—H8A | 0.9700 |
C2—H2B | 0.9700 | C8—H8B | 0.9700 |
C3—O1 | 1.452 (5) | O2—S1 | 1.422 (4) |
C3—C4 | 1.505 (7) | N1—S1 | 1.619 (3) |
C3—H3 | 0.9800 | C9—S1 | 1.749 (5) |
C4—C5 | 1.317 (7) | C9—H9A | 0.9600 |
C4—H4 | 0.9300 | C9—H9B | 0.9600 |
C5—C6 | 1.506 (6) | C9—H9C | 0.9600 |
C5—H5 | 0.9300 | O3—S1 | 1.432 (3) |
C6—O1 | 1.448 (5) | ||
C8—C1—C2 | 118.5 (3) | C7—C6—C1 | 107.2 (3) |
C8—C1—C6 | 101.3 (3) | N1—C7—C6 | 103.0 (3) |
C2—C1—C6 | 102.7 (3) | N1—C7—H7A | 111.2 |
C8—C1—Br1 | 108.7 (3) | C6—C7—H7A | 111.2 |
C2—C1—Br1 | 112.9 (3) | N1—C7—H7B | 111.2 |
C6—C1—Br1 | 112.0 (2) | C6—C7—H7B | 111.2 |
C1—C2—C3 | 100.0 (3) | H7A—C7—H7B | 109.1 |
C1—C2—H2A | 111.8 | N1—C8—C1 | 102.6 (3) |
C3—C2—H2A | 111.8 | N1—C8—H8A | 111.2 |
C1—C2—H2B | 111.8 | C1—C8—H8A | 111.2 |
C3—C2—H2B | 111.8 | N1—C8—H8B | 111.2 |
H2A—C2—H2B | 109.5 | C1—C8—H8B | 111.2 |
O1—C3—C4 | 100.7 (4) | H8A—C8—H8B | 109.2 |
O1—C3—C2 | 101.0 (3) | C8—N1—C7 | 111.4 (3) |
C4—C3—C2 | 108.5 (4) | C8—N1—S1 | 121.6 (3) |
O1—C3—H3 | 115.0 | C7—N1—S1 | 120.8 (3) |
C4—C3—H3 | 115.0 | C6—O1—C3 | 95.6 (3) |
C2—C3—H3 | 115.0 | S1—C9—H9A | 109.5 |
C5—C4—C3 | 107.0 (4) | S1—C9—H9B | 109.5 |
C5—C4—H4 | 126.5 | H9A—C9—H9B | 109.5 |
C3—C4—H4 | 126.5 | S1—C9—H9C | 109.5 |
C4—C5—C6 | 105.1 (4) | H9A—C9—H9C | 109.5 |
C4—C5—H5 | 127.4 | H9B—C9—H9C | 109.5 |
C6—C5—H5 | 127.4 | O2—S1—O3 | 119.5 (2) |
O1—C6—C5 | 101.4 (3) | O2—S1—N1 | 105.8 (2) |
O1—C6—C7 | 111.1 (3) | O3—S1—N1 | 107.14 (19) |
C5—C6—C7 | 125.8 (4) | O2—S1—C9 | 109.3 (3) |
O1—C6—C1 | 97.9 (3) | O3—S1—C9 | 106.7 (2) |
C5—C6—C1 | 109.8 (3) | N1—S1—C9 | 107.9 (2) |
C8—C1—C2—C3 | 108.2 (4) | C5—C6—C7—N1 | −143.5 (4) |
C6—C1—C2—C3 | −2.3 (4) | C1—C6—C7—N1 | −12.1 (4) |
Br1—C1—C2—C3 | −123.1 (3) | C2—C1—C8—N1 | −148.4 (4) |
C1—C2—C3—O1 | −35.0 (4) | C6—C1—C8—N1 | −37.1 (4) |
C1—C2—C3—C4 | 70.3 (4) | Br1—C1—C8—N1 | 80.9 (3) |
O1—C3—C4—C5 | 31.9 (5) | C1—C8—N1—C7 | 32.5 (4) |
C2—C3—C4—C5 | −73.6 (5) | C1—C8—N1—S1 | −175.0 (3) |
C3—C4—C5—C6 | 0.7 (5) | C6—C7—N1—C8 | −12.6 (5) |
C4—C5—C6—O1 | −33.4 (4) | C6—C7—N1—S1 | −165.3 (3) |
C4—C5—C6—C7 | −160.2 (4) | C5—C6—O1—C3 | 51.1 (4) |
C4—C5—C6—C1 | 69.4 (4) | C7—C6—O1—C3 | −173.0 (3) |
C8—C1—C6—O1 | −84.1 (3) | C1—C6—O1—C3 | −61.0 (3) |
C2—C1—C6—O1 | 38.8 (3) | C4—C3—O1—C6 | −50.1 (4) |
Br1—C1—C6—O1 | 160.2 (2) | C2—C3—O1—C6 | 61.4 (4) |
C8—C1—C6—C5 | 170.7 (3) | C8—N1—S1—O2 | 173.3 (4) |
C2—C1—C6—C5 | −66.4 (4) | C7—N1—S1—O2 | −36.8 (4) |
Br1—C1—C6—C5 | 55.0 (4) | C8—N1—S1—O3 | 44.7 (4) |
C8—C1—C6—C7 | 31.0 (4) | C7—N1—S1—O3 | −165.3 (3) |
C2—C1—C6—C7 | 153.9 (3) | C8—N1—S1—C9 | −69.8 (4) |
Br1—C1—C6—C7 | −84.7 (3) | C7—N1—S1—C9 | 80.1 (4) |
O1—C6—C7—N1 | 93.8 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9A···O2i | 0.96 | 2.59 | 3.385 (7) | 140 |
C9—H9C···O1ii | 0.96 | 2.59 | 3.540 (6) | 172 |
Symmetry codes: (i) −x+2, −y+2, −z+2; (ii) −x+2, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C9H12BrNO3S |
Mr | 294.17 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 5.9478 (7), 9.5869 (10), 10.7775 (11) |
α, β, γ (°) | 114.307 (8), 90.481 (9), 97.812 (9) |
V (Å3) | 553.46 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 3.89 |
Crystal size (mm) | 0.38 × 0.23 × 0.08 |
Data collection | |
Diffractometer | Stoe IPDS 2 diffractometer |
Absorption correction | Integration (X-RED; Stoe & Cie, 2001) |
Tmin, Tmax | 0.223, 0.682 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8163, 2293, 1920 |
Rint | 0.082 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.107, 1.10 |
No. of reflections | 2293 |
No. of parameters | 137 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.86, −0.44 |
Computer programs: X-AREA (Stoe & Cie, 2002), X-RED32 (Stoe & Cie, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009), SHELXTL (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009), publCIF (Westrip, 2010) and Mercury (Macrae et al., 2006).
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9A···O2i | 0.96 | 2.59 | 3.385 (7) | 140 |
C9—H9C···O1ii | 0.96 | 2.59 | 3.540 (6) | 172 |
Symmetry codes: (i) −x+2, −y+2, −z+2; (ii) −x+2, −y+1, −z+2. |
Acknowledgements
The authors acknowledge the Faculty of Arts and Sciences, Ondokuz Mayıs University, Turkey, for the use of the diffractometer (purchased under grant F.279 of University Research Fund) and also The Scientific & Technological Research Council of Turkey (TÜBİTAK) for the financial support of this work (PN: 107 T831).
References
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Sulfonamides are one of the most important groups of compounds for the medical purposes (Kleemann et al., 1999). They have mostly been applied for the treatment of bacterial infection (Cremlyn, 1996). Sulfonamide is not only an early class of antibiotics, also, has showed different functionality such as a protease inhibitor amprenavir, the analgesic celecoxib, sildenafil for erectile dysfunction, and the antimigraine agent sumatriptan. The most sulfonamides have been synthesized from a reaction between a sulfonyl chloride and ammonia or primary or secondary amines or via related transformations (Anderson, 1979).
Several thermal intramolecular Diels Alder reaction of furans (IMDAF) cycloadditon were performed including a nitrogen linked side chain of furan and already reported by Demircan and his co-workers (Demircan and Parsons, 2002; Arslan et al., 2008). We would like to report here a newly synthesized sulfonamide, I.
In continuation of our interest, mesyl group in the structure is normally chosen as a protective group for nitrogen, but at the same time, accelerates the cycloaddition process for IMDAF (Greene, 1981; Choony et al., 1997). This facile, versatile and environmentally friendly reaction was accomplished in aqueous condition and stirred for two days at 372 K.
The molecular structure of the title compound, I, is shown in Fig. 1. A l l bond lengths show normal values (Allen et al., 1987). In addition, the C—Br bond distance, 1.953 (4) Å, is not significantly different from the value reported for C—Br single bond (1.961 (3) Å; Koşar et al., 2006). The six membered ring, C1—C6, is in a boat conformation with puckering parameter Q = 0.933 (5) Å, θ = 89.1 (3) °, ϕ = 119.1 (3) °. The tetrahydrofuran, O1/C3–C6, and bromo-attached tetrahydrofuran, O1/C3/C2/C1/C6, rings adopt envelope conformations, and the puckering parameter Q values are 0.517 (5) and 0.607 (4) ° Å, respectively (Cremer & Pople, 1975). The pyrrolidine ring, N1/C7/C6/C1/C8, adopts half chair conformation, and the puckering parameter Q = 0.368 (4) Å and ϕ = 304.8 (7) °, (Cremer & Pople, 1975).
Fig. 2 shows the packing of the molecules in the unit cell. The crystal packing of (I) is stabilized by intermolecular C9—H9A···O2 and C9—H9C···O1 interactions (Table 1). The methyl group in the reference molecule at (x, y, z) acts as double hydrogen bond donor, via H9A and H9C, to atoms O2 in the molecule at (-x + 2, -y + 2, -z + 2) and O1 in the molecule at (-x + 2, -y + 1, -z + 2), so forming successive R22(8) and R22(14) rings running parallel to the [010] direction (Bernstein et al., 1995).