organic compounds
9-[(2-Chlorobenzyl)amino]-5-(3,4,5-trimethoxyphenyl)-5,5a,8a,9-tetrahydrofuro[3′,4′:6,7]naphtho[2,3-d][1,3]dioxol-6(8H)-one
aThe Affiliated Hospital of the Medical College of the Chinese People's Armed Police Forces, Tianjin 300162, People's Republic of China, bThe General Unit of the Chinese People's Armed Police Force Hospital in Tianjin, Tianjin 300252, People's Republic of China, cTianjin Key Laboratory for Biomarkers of Occupational and Environmental Hazards, Tianjin 300162, People's Republic of China, and dRoom of Pharmacognosy, Medical College of the Chinese People's Armed Police Forces, Tianjin 300162, People's Republic of China
*Correspondence e-mail: liujing870421@yahoo.cn
In the title compound, C29H28ClNO7, the tetrahydrofuran ring and the six-membered ring fused to it both display envelope conformations. The dihedral angles between the plane of the benzene ring of the benzo[d][1,3]dioxole system and the planes of the other two benzene rings are 80.59 (3) and 63.60 (2)°.
Related literature
For bond-length and angle data for similar structures, see: Feng et al. (2008); Zhang et al. (1994); Zuo et al. (2009).
Experimental
Crystal data
|
Refinement
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Data collection: CrystalClear (Rigaku, 2007); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536811018289/hg5035sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811018289/hg5035Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811018289/hg5035Isup3.cml
The target compound was synthesized by two steps. 2-chlorobenzaldehyde, 4β-amino podophyllotoxin, two drops of acetic acid in 95% ethanol was stirred for 6 h. Appropriate amount of NaBH4 was added into the reaction mixture to stirred for 1 h at 273 K. Then add 5% HCl to end off the reaction, the reaction mixture was concentrated in vacuo. Add saturated NaHCO3 to adjust PH>7. The reaction mixture was extracted with CH2Cl2 and dried over MgSO4 and concentrated in vacuo. The residue was resolved in a methanol solution and slow evaporation over two weeks at room temperature gave transparent crystals suitable for X-ray analysis.
All C H atoms were found on difference maps, with C—H = 0.95–1.00 Å and included in the final cycles of
using a riding model, with Uiso(H) = 1.2Ueq(C) for aryl and methylene H atoms and 1.5Ueq(C) for the methyl H atoms. H atoms bonded N were refined freely with N—H = 0.96 (2) Å.Data collection: CrystalClear (Rigaku, 2007); cell
CrystalClear (Rigaku, 2007); data reduction: CrystalClear (Rigaku, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. View of the title compound, with displacement ellipsoids drawn at the 40% probability level. |
C29H28ClNO7 | F(000) = 1128 |
Mr = 537.97 | Dx = 1.429 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 8535 reflections |
a = 10.0971 (14) Å | θ = 1.3–27.9° |
b = 15.264 (2) Å | µ = 0.20 mm−1 |
c = 16.220 (2) Å | T = 113 K |
V = 2499.9 (6) Å3 | Prism, colorless |
Z = 4 | 0.20 × 0.18 × 0.12 mm |
Rigaku Saturn CCD area-detector diffractometer | 5968 independent reflections |
Radiation source: rotating anode | 5580 reflections with I > 2σ(I) |
Multilayer monochromator | Rint = 0.044 |
Detector resolution: 14.63 pixels mm-1 | θmax = 27.9°, θmin = 1.8° |
ω and ϕ scans | h = −13→13 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007) | k = −20→20 |
Tmin = 0.960, Tmax = 0.976 | l = −20→21 |
26247 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.031 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.066 | w = 1/[σ2(Fo2) + (0.0324P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.001 |
5968 reflections | Δρmax = 0.18 e Å−3 |
350 parameters | Δρmin = −0.25 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 2615 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.00 (4) |
C29H28ClNO7 | V = 2499.9 (6) Å3 |
Mr = 537.97 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 10.0971 (14) Å | µ = 0.20 mm−1 |
b = 15.264 (2) Å | T = 113 K |
c = 16.220 (2) Å | 0.20 × 0.18 × 0.12 mm |
Rigaku Saturn CCD area-detector diffractometer | 5968 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007) | 5580 reflections with I > 2σ(I) |
Tmin = 0.960, Tmax = 0.976 | Rint = 0.044 |
26247 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.066 | Δρmax = 0.18 e Å−3 |
S = 1.03 | Δρmin = −0.25 e Å−3 |
5968 reflections | Absolute structure: Flack (1983), 2615 Friedel pairs |
350 parameters | Absolute structure parameter: 0.00 (4) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | −0.19083 (4) | −0.19218 (2) | 0.81504 (2) | 0.02120 (9) | |
O1 | 0.56079 (11) | 0.23021 (7) | 0.72078 (6) | 0.0247 (3) | |
O2 | 0.41961 (12) | 0.14072 (7) | 0.64668 (6) | 0.0240 (3) | |
O3 | 0.09055 (11) | 0.06096 (7) | 1.11792 (6) | 0.0253 (3) | |
O4 | 0.28209 (11) | 0.10425 (6) | 1.17321 (6) | 0.0261 (3) | |
O5 | 0.31178 (11) | 0.40151 (6) | 1.20050 (6) | 0.0209 (2) | |
O6 | 0.18781 (11) | 0.51133 (6) | 1.09222 (6) | 0.0189 (2) | |
O7 | 0.12116 (11) | 0.45705 (6) | 0.94280 (6) | 0.0209 (2) | |
N1 | 0.16797 (13) | −0.03792 (7) | 0.88773 (8) | 0.0199 (3) | |
C1 | 0.03959 (16) | 0.03821 (10) | 1.03598 (9) | 0.0229 (3) | |
H1A | −0.0550 | 0.0545 | 1.0307 | 0.027* | |
H1B | 0.0491 | −0.0253 | 1.0253 | 0.027* | |
C2 | 0.12467 (15) | 0.09136 (9) | 0.97679 (9) | 0.0178 (3) | |
H2 | 0.0883 | 0.1522 | 0.9740 | 0.021* | |
C3 | 0.14712 (15) | 0.05866 (8) | 0.88890 (9) | 0.0180 (3) | |
H3 | 0.0667 | 0.0725 | 0.8554 | 0.022* | |
C4 | 0.26551 (15) | 0.10614 (8) | 0.85124 (9) | 0.0162 (3) | |
C5 | 0.28349 (15) | 0.09545 (9) | 0.76558 (9) | 0.0193 (3) | |
H5 | 0.2256 | 0.0594 | 0.7343 | 0.023* | |
C6 | 0.38597 (16) | 0.13821 (9) | 0.72912 (9) | 0.0189 (3) | |
C7 | 0.54559 (17) | 0.18360 (12) | 0.64454 (10) | 0.0287 (4) | |
H7A | 0.5496 | 0.2248 | 0.5975 | 0.034* | |
H7B | 0.6174 | 0.1399 | 0.6382 | 0.034* | |
C8 | 0.47041 (15) | 0.19194 (10) | 0.77350 (9) | 0.0185 (3) | |
C9 | 0.45689 (15) | 0.20311 (9) | 0.85659 (9) | 0.0180 (3) | |
H9 | 0.5156 | 0.2400 | 0.8865 | 0.022* | |
C10 | 0.35316 (15) | 0.15831 (8) | 0.89679 (9) | 0.0163 (3) | |
C11 | 0.34335 (15) | 0.16871 (8) | 0.99015 (8) | 0.0161 (3) | |
H11 | 0.4342 | 0.1599 | 1.0133 | 0.019* | |
C12 | 0.25620 (15) | 0.09411 (9) | 1.02231 (9) | 0.0179 (3) | |
H12 | 0.3033 | 0.0382 | 1.0093 | 0.021* | |
C13 | 0.29684 (15) | 0.25985 (8) | 1.01666 (8) | 0.0158 (3) | |
C14 | 0.32622 (15) | 0.28769 (8) | 1.09600 (9) | 0.0168 (3) | |
H14 | 0.3742 | 0.2503 | 1.1320 | 0.020* | |
C15 | 0.28577 (15) | 0.37031 (9) | 1.12340 (8) | 0.0158 (3) | |
C16 | 0.21789 (15) | 0.42648 (8) | 1.07030 (8) | 0.0158 (3) | |
C17 | 0.18852 (15) | 0.39801 (8) | 0.99061 (8) | 0.0157 (3) | |
C18 | 0.22750 (14) | 0.31519 (9) | 0.96379 (9) | 0.0165 (3) | |
H18 | 0.2068 | 0.2965 | 0.9094 | 0.020* | |
C19 | 0.37066 (17) | 0.34058 (10) | 1.25669 (9) | 0.0248 (4) | |
H19A | 0.3180 | 0.2867 | 1.2580 | 0.037* | |
H19B | 0.3734 | 0.3664 | 1.3120 | 0.037* | |
H19C | 0.4609 | 0.3270 | 1.2386 | 0.037* | |
C20 | 0.08614 (17) | 0.52134 (10) | 1.15354 (10) | 0.0233 (4) | |
H20A | 0.0070 | 0.4889 | 1.1365 | 0.035* | |
H20B | 0.0642 | 0.5836 | 1.1596 | 0.035* | |
H20C | 0.1179 | 0.4984 | 1.2064 | 0.035* | |
C21 | 0.10712 (18) | 0.43615 (10) | 0.85726 (9) | 0.0254 (4) | |
H21A | 0.1949 | 0.4285 | 0.8325 | 0.038* | |
H21B | 0.0604 | 0.4838 | 0.8291 | 0.038* | |
H21C | 0.0564 | 0.3818 | 0.8515 | 0.038* | |
C22 | 0.04768 (15) | −0.08553 (9) | 0.86421 (9) | 0.0193 (3) | |
H22A | 0.0434 | −0.0891 | 0.8033 | 0.023* | |
H22B | −0.0305 | −0.0519 | 0.8832 | 0.023* | |
C23 | 0.04024 (15) | −0.17743 (9) | 0.89942 (8) | 0.0157 (3) | |
C24 | 0.13828 (16) | −0.21272 (9) | 0.94947 (9) | 0.0196 (3) | |
H24 | 0.2148 | −0.1789 | 0.9617 | 0.024* | |
C25 | 0.12665 (16) | −0.29669 (9) | 0.98209 (9) | 0.0218 (3) | |
H25 | 0.1958 | −0.3201 | 1.0151 | 0.026* | |
C26 | 0.01461 (16) | −0.34623 (10) | 0.96657 (9) | 0.0206 (3) | |
H26 | 0.0055 | −0.4028 | 0.9904 | 0.025* | |
C27 | −0.08436 (15) | −0.31306 (9) | 0.91619 (8) | 0.0184 (3) | |
H27 | −0.1614 | −0.3467 | 0.9049 | 0.022* | |
C28 | −0.06935 (15) | −0.23039 (9) | 0.88264 (8) | 0.0165 (3) | |
C30 | 0.21676 (16) | 0.08957 (9) | 1.11209 (9) | 0.0211 (3) | |
H1 | 0.2339 (18) | −0.0558 (10) | 0.8486 (10) | 0.029 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.01945 (19) | 0.02013 (16) | 0.02402 (18) | −0.00103 (16) | −0.00483 (16) | 0.00179 (14) |
O1 | 0.0245 (6) | 0.0268 (6) | 0.0227 (6) | −0.0046 (5) | 0.0060 (5) | −0.0004 (4) |
O2 | 0.0276 (7) | 0.0272 (6) | 0.0172 (5) | −0.0013 (5) | 0.0006 (5) | −0.0011 (4) |
O3 | 0.0264 (7) | 0.0266 (6) | 0.0229 (6) | −0.0033 (5) | 0.0008 (5) | 0.0018 (5) |
O4 | 0.0340 (7) | 0.0244 (5) | 0.0200 (6) | −0.0020 (5) | −0.0058 (5) | 0.0028 (4) |
O5 | 0.0264 (6) | 0.0203 (5) | 0.0160 (5) | −0.0005 (5) | −0.0052 (5) | −0.0020 (4) |
O6 | 0.0253 (6) | 0.0112 (4) | 0.0203 (5) | −0.0021 (5) | 0.0045 (5) | −0.0013 (4) |
O7 | 0.0305 (6) | 0.0163 (5) | 0.0159 (5) | 0.0054 (5) | −0.0063 (5) | 0.0013 (4) |
N1 | 0.0177 (7) | 0.0138 (6) | 0.0282 (7) | 0.0003 (5) | −0.0035 (6) | −0.0016 (5) |
C1 | 0.0202 (9) | 0.0249 (8) | 0.0234 (8) | −0.0020 (7) | −0.0009 (7) | 0.0017 (6) |
C2 | 0.0168 (8) | 0.0154 (7) | 0.0213 (7) | 0.0017 (6) | −0.0017 (6) | 0.0016 (6) |
C3 | 0.0163 (8) | 0.0147 (7) | 0.0230 (8) | 0.0008 (6) | −0.0051 (6) | −0.0003 (6) |
C4 | 0.0178 (8) | 0.0104 (6) | 0.0203 (7) | 0.0030 (6) | −0.0027 (6) | 0.0012 (5) |
C5 | 0.0213 (8) | 0.0140 (6) | 0.0227 (8) | 0.0009 (6) | −0.0054 (6) | −0.0020 (6) |
C6 | 0.0232 (9) | 0.0165 (7) | 0.0171 (8) | 0.0050 (6) | −0.0008 (6) | 0.0017 (6) |
C7 | 0.0255 (9) | 0.0387 (10) | 0.0219 (8) | −0.0006 (8) | 0.0017 (7) | 0.0007 (7) |
C8 | 0.0170 (8) | 0.0152 (7) | 0.0232 (8) | 0.0026 (7) | 0.0003 (6) | 0.0023 (6) |
C9 | 0.0176 (8) | 0.0142 (7) | 0.0221 (8) | 0.0001 (6) | −0.0023 (6) | −0.0031 (6) |
C10 | 0.0179 (8) | 0.0126 (6) | 0.0182 (7) | 0.0059 (6) | −0.0010 (6) | −0.0014 (5) |
C11 | 0.0169 (8) | 0.0164 (7) | 0.0151 (7) | 0.0013 (6) | −0.0033 (6) | 0.0010 (5) |
C12 | 0.0184 (8) | 0.0139 (6) | 0.0214 (8) | 0.0027 (6) | −0.0028 (6) | 0.0012 (6) |
C13 | 0.0142 (8) | 0.0153 (7) | 0.0179 (7) | −0.0017 (6) | 0.0000 (7) | 0.0002 (5) |
C14 | 0.0157 (8) | 0.0161 (7) | 0.0187 (7) | 0.0005 (6) | −0.0041 (6) | 0.0036 (5) |
C15 | 0.0154 (8) | 0.0179 (6) | 0.0140 (7) | −0.0047 (6) | −0.0006 (6) | −0.0013 (5) |
C16 | 0.0181 (8) | 0.0125 (6) | 0.0169 (7) | −0.0027 (6) | 0.0024 (6) | −0.0017 (5) |
C17 | 0.0148 (7) | 0.0146 (6) | 0.0178 (7) | −0.0023 (6) | 0.0002 (6) | 0.0030 (5) |
C18 | 0.0174 (7) | 0.0169 (7) | 0.0152 (7) | −0.0020 (6) | 0.0010 (6) | −0.0006 (6) |
C19 | 0.0292 (9) | 0.0276 (8) | 0.0175 (8) | −0.0019 (7) | −0.0070 (7) | 0.0028 (6) |
C20 | 0.0239 (9) | 0.0189 (8) | 0.0272 (9) | −0.0012 (6) | 0.0056 (7) | −0.0033 (6) |
C21 | 0.0386 (10) | 0.0215 (8) | 0.0160 (8) | −0.0003 (7) | −0.0056 (7) | 0.0025 (6) |
C22 | 0.0196 (8) | 0.0172 (7) | 0.0213 (8) | −0.0031 (6) | −0.0033 (6) | 0.0018 (6) |
C23 | 0.0182 (8) | 0.0151 (7) | 0.0138 (7) | 0.0006 (6) | 0.0017 (6) | −0.0017 (5) |
C24 | 0.0202 (8) | 0.0212 (8) | 0.0174 (7) | −0.0011 (6) | −0.0004 (6) | −0.0022 (6) |
C25 | 0.0274 (9) | 0.0211 (8) | 0.0169 (7) | 0.0059 (7) | −0.0040 (7) | 0.0001 (6) |
C26 | 0.0284 (9) | 0.0158 (7) | 0.0174 (7) | 0.0022 (6) | 0.0046 (7) | 0.0003 (6) |
C27 | 0.0200 (8) | 0.0183 (7) | 0.0169 (7) | −0.0029 (7) | 0.0044 (6) | −0.0025 (6) |
C28 | 0.0168 (8) | 0.0189 (7) | 0.0139 (7) | 0.0018 (6) | 0.0002 (6) | −0.0018 (6) |
C30 | 0.0246 (9) | 0.0143 (7) | 0.0245 (8) | 0.0018 (6) | −0.0008 (7) | 0.0032 (6) |
Cl1—C28 | 1.7455 (15) | C11—C13 | 1.5301 (19) |
O1—C8 | 1.3803 (18) | C11—C12 | 1.531 (2) |
O1—C7 | 1.4348 (18) | C11—H11 | 1.0000 |
O2—C6 | 1.3802 (17) | C12—C30 | 1.511 (2) |
O2—C7 | 1.431 (2) | C12—H12 | 1.0000 |
O3—C30 | 1.3504 (19) | C13—C14 | 1.3874 (19) |
O3—C1 | 1.4669 (18) | C13—C18 | 1.3925 (19) |
O4—C30 | 1.2116 (18) | C14—C15 | 1.3981 (19) |
O5—C15 | 1.3637 (16) | C14—H14 | 0.9500 |
O5—C19 | 1.4315 (17) | C15—C16 | 1.395 (2) |
O6—C16 | 1.3771 (16) | C16—C17 | 1.3956 (19) |
O6—C20 | 1.4374 (18) | C17—C18 | 1.3937 (19) |
O7—C17 | 1.3697 (17) | C18—H18 | 0.9500 |
O7—C21 | 1.4307 (18) | C19—H19A | 0.9800 |
N1—C22 | 1.4659 (19) | C19—H19B | 0.9800 |
N1—C3 | 1.4892 (17) | C19—H19C | 0.9800 |
N1—H1 | 0.959 (17) | C20—H20A | 0.9800 |
C1—C2 | 1.522 (2) | C20—H20B | 0.9800 |
C1—H1A | 0.9900 | C20—H20C | 0.9800 |
C1—H1B | 0.9900 | C21—H21A | 0.9800 |
C2—C12 | 1.520 (2) | C21—H21B | 0.9800 |
C2—C3 | 1.527 (2) | C21—H21C | 0.9800 |
C2—H2 | 1.0000 | C22—C23 | 1.5164 (19) |
C3—C4 | 1.526 (2) | C22—H22A | 0.9900 |
C3—H3 | 1.0000 | C22—H22B | 0.9900 |
C4—C10 | 1.401 (2) | C23—C24 | 1.389 (2) |
C4—C5 | 1.411 (2) | C23—C28 | 1.397 (2) |
C5—C6 | 1.359 (2) | C24—C25 | 1.392 (2) |
C5—H5 | 0.9500 | C24—H24 | 0.9500 |
C6—C8 | 1.385 (2) | C25—C26 | 1.384 (2) |
C7—H7A | 0.9900 | C25—H25 | 0.9500 |
C7—H7B | 0.9900 | C26—C27 | 1.387 (2) |
C8—C9 | 1.3654 (19) | C26—H26 | 0.9500 |
C9—C10 | 1.411 (2) | C27—C28 | 1.383 (2) |
C9—H9 | 0.9500 | C27—H27 | 0.9500 |
C10—C11 | 1.526 (2) | ||
C8—O1—C7 | 104.68 (11) | C14—C13—C18 | 119.54 (12) |
C6—O2—C7 | 104.77 (12) | C14—C13—C11 | 118.26 (12) |
C30—O3—C1 | 110.13 (12) | C18—C13—C11 | 122.19 (12) |
C15—O5—C19 | 115.91 (11) | C13—C14—C15 | 120.58 (13) |
C16—O6—C20 | 115.86 (10) | C13—C14—H14 | 119.7 |
C17—O7—C21 | 116.85 (11) | C15—C14—H14 | 119.7 |
C22—N1—C3 | 112.14 (11) | O5—C15—C16 | 116.50 (12) |
C22—N1—H1 | 105.2 (10) | O5—C15—C14 | 123.39 (12) |
C3—N1—H1 | 112.8 (10) | C16—C15—C14 | 120.10 (13) |
O3—C1—C2 | 104.31 (12) | O6—C16—C15 | 121.80 (12) |
O3—C1—H1A | 110.9 | O6—C16—C17 | 119.02 (12) |
C2—C1—H1A | 110.9 | C15—C16—C17 | 119.00 (12) |
O3—C1—H1B | 110.9 | O7—C17—C18 | 124.07 (13) |
C2—C1—H1B | 110.9 | O7—C17—C16 | 115.16 (12) |
H1A—C1—H1B | 108.9 | C18—C17—C16 | 120.77 (13) |
C12—C2—C1 | 101.62 (11) | C13—C18—C17 | 120.00 (13) |
C12—C2—C3 | 109.44 (12) | C13—C18—H18 | 120.0 |
C1—C2—C3 | 119.88 (12) | C17—C18—H18 | 120.0 |
C12—C2—H2 | 108.4 | O5—C19—H19A | 109.5 |
C1—C2—H2 | 108.4 | O5—C19—H19B | 109.5 |
C3—C2—H2 | 108.4 | H19A—C19—H19B | 109.5 |
N1—C3—C4 | 110.76 (12) | O5—C19—H19C | 109.5 |
N1—C3—C2 | 110.88 (12) | H19A—C19—H19C | 109.5 |
C4—C3—C2 | 109.56 (11) | H19B—C19—H19C | 109.5 |
N1—C3—H3 | 108.5 | O6—C20—H20A | 109.5 |
C4—C3—H3 | 108.5 | O6—C20—H20B | 109.5 |
C2—C3—H3 | 108.5 | H20A—C20—H20B | 109.5 |
C10—C4—C5 | 120.25 (14) | O6—C20—H20C | 109.5 |
C10—C4—C3 | 123.63 (13) | H20A—C20—H20C | 109.5 |
C5—C4—C3 | 116.12 (13) | H20B—C20—H20C | 109.5 |
C6—C5—C4 | 118.11 (14) | O7—C21—H21A | 109.5 |
C6—C5—H5 | 120.9 | O7—C21—H21B | 109.5 |
C4—C5—H5 | 120.9 | H21A—C21—H21B | 109.5 |
C5—C6—O2 | 128.50 (14) | O7—C21—H21C | 109.5 |
C5—C6—C8 | 121.80 (13) | H21A—C21—H21C | 109.5 |
O2—C6—C8 | 109.61 (13) | H21B—C21—H21C | 109.5 |
O2—C7—O1 | 107.52 (12) | N1—C22—C23 | 113.68 (12) |
O2—C7—H7A | 110.2 | N1—C22—H22A | 108.8 |
O1—C7—H7A | 110.2 | C23—C22—H22A | 108.8 |
O2—C7—H7B | 110.2 | N1—C22—H22B | 108.8 |
O1—C7—H7B | 110.2 | C23—C22—H22B | 108.8 |
H7A—C7—H7B | 108.5 | H22A—C22—H22B | 107.7 |
C9—C8—O1 | 128.67 (14) | C24—C23—C28 | 117.00 (13) |
C9—C8—C6 | 121.71 (14) | C24—C23—C22 | 122.93 (13) |
O1—C8—C6 | 109.61 (12) | C28—C23—C22 | 120.07 (13) |
C8—C9—C10 | 118.03 (14) | C23—C24—C25 | 121.28 (14) |
C8—C9—H9 | 121.0 | C23—C24—H24 | 119.4 |
C10—C9—H9 | 121.0 | C25—C24—H24 | 119.4 |
C4—C10—C9 | 120.05 (13) | C26—C25—C24 | 120.20 (14) |
C4—C10—C11 | 122.78 (13) | C26—C25—H25 | 119.9 |
C9—C10—C11 | 117.17 (13) | C24—C25—H25 | 119.9 |
C10—C11—C13 | 113.17 (11) | C25—C26—C27 | 119.80 (14) |
C10—C11—C12 | 107.35 (11) | C25—C26—H26 | 120.1 |
C13—C11—C12 | 113.84 (12) | C27—C26—H26 | 120.1 |
C10—C11—H11 | 107.4 | C28—C27—C26 | 119.09 (14) |
C13—C11—H11 | 107.4 | C28—C27—H27 | 120.5 |
C12—C11—H11 | 107.4 | C26—C27—H27 | 120.5 |
C30—C12—C2 | 103.68 (12) | C27—C28—C23 | 122.56 (14) |
C30—C12—C11 | 120.93 (12) | C27—C28—Cl1 | 118.38 (12) |
C2—C12—C11 | 110.93 (11) | C23—C28—Cl1 | 119.05 (11) |
C30—C12—H12 | 106.8 | O4—C30—O3 | 121.09 (14) |
C2—C12—H12 | 106.8 | O4—C30—C12 | 129.53 (15) |
C11—C12—H12 | 106.8 | O3—C30—C12 | 109.32 (13) |
C30—O3—C1—C2 | −23.55 (15) | C10—C11—C13—C14 | −158.29 (13) |
O3—C1—C2—C12 | 32.23 (14) | C12—C11—C13—C14 | 78.78 (17) |
O3—C1—C2—C3 | 152.89 (12) | C10—C11—C13—C18 | 21.3 (2) |
C22—N1—C3—C4 | −138.33 (13) | C12—C11—C13—C18 | −101.68 (15) |
C22—N1—C3—C2 | 99.82 (14) | C18—C13—C14—C15 | 0.6 (2) |
C12—C2—C3—N1 | 76.31 (15) | C11—C13—C14—C15 | −179.85 (13) |
C1—C2—C3—N1 | −40.37 (18) | C19—O5—C15—C16 | 174.55 (13) |
C12—C2—C3—C4 | −46.24 (14) | C19—O5—C15—C14 | −7.0 (2) |
C1—C2—C3—C4 | −162.92 (13) | C13—C14—C15—O5 | −179.86 (13) |
N1—C3—C4—C10 | −111.37 (14) | C13—C14—C15—C16 | −1.5 (2) |
C2—C3—C4—C10 | 11.25 (18) | C20—O6—C16—C15 | −71.65 (18) |
N1—C3—C4—C5 | 68.97 (15) | C20—O6—C16—C17 | 113.25 (15) |
C2—C3—C4—C5 | −168.41 (12) | O5—C15—C16—O6 | 4.9 (2) |
C10—C4—C5—C6 | −1.1 (2) | C14—C15—C16—O6 | −173.55 (13) |
C3—C4—C5—C6 | 178.52 (12) | O5—C15—C16—C17 | −179.98 (12) |
C4—C5—C6—O2 | −177.04 (14) | C14—C15—C16—C17 | 1.5 (2) |
C4—C5—C6—C8 | −0.8 (2) | C21—O7—C17—C18 | −9.0 (2) |
C7—O2—C6—C5 | −171.48 (15) | C21—O7—C17—C16 | 170.60 (13) |
C7—O2—C6—C8 | 11.94 (16) | O6—C16—C17—O7 | −5.1 (2) |
C6—O2—C7—O1 | −19.05 (16) | C15—C16—C17—O7 | 179.68 (13) |
C8—O1—C7—O2 | 18.94 (16) | O6—C16—C17—C18 | 174.50 (13) |
C7—O1—C8—C9 | 169.91 (16) | C15—C16—C17—C18 | −0.7 (2) |
C7—O1—C8—C6 | −11.63 (15) | C14—C13—C18—C17 | 0.2 (2) |
C5—C6—C8—C9 | 1.6 (2) | C11—C13—C18—C17 | −179.31 (13) |
O2—C6—C8—C9 | 178.41 (13) | O7—C17—C18—C13 | 179.40 (13) |
C5—C6—C8—O1 | −177.03 (13) | C16—C17—C18—C13 | −0.1 (2) |
O2—C6—C8—O1 | −0.17 (16) | C3—N1—C22—C23 | −152.51 (12) |
O1—C8—C9—C10 | 178.05 (13) | N1—C22—C23—C24 | 0.2 (2) |
C6—C8—C9—C10 | −0.2 (2) | N1—C22—C23—C28 | 179.56 (13) |
C5—C4—C10—C9 | 2.4 (2) | C28—C23—C24—C25 | −0.7 (2) |
C3—C4—C10—C9 | −177.21 (13) | C22—C23—C24—C25 | 178.61 (14) |
C5—C4—C10—C11 | −176.76 (13) | C23—C24—C25—C26 | −1.5 (2) |
C3—C4—C10—C11 | 3.6 (2) | C24—C25—C26—C27 | 2.1 (2) |
C8—C9—C10—C4 | −1.7 (2) | C25—C26—C27—C28 | −0.4 (2) |
C8—C9—C10—C11 | 177.53 (13) | C26—C27—C28—C23 | −2.0 (2) |
C4—C10—C11—C13 | −109.51 (15) | C26—C27—C28—Cl1 | 176.65 (11) |
C9—C10—C11—C13 | 71.28 (17) | C24—C23—C28—C27 | 2.5 (2) |
C4—C10—C11—C12 | 16.95 (18) | C22—C23—C28—C27 | −176.88 (13) |
C9—C10—C11—C12 | −162.27 (12) | C24—C23—C28—Cl1 | −176.10 (11) |
C1—C2—C12—C30 | −29.50 (14) | C22—C23—C28—Cl1 | 4.52 (18) |
C3—C2—C12—C30 | −157.22 (11) | C1—O3—C30—O4 | −173.15 (13) |
C1—C2—C12—C11 | −160.76 (12) | C1—O3—C30—C12 | 4.19 (15) |
C3—C2—C12—C11 | 71.52 (14) | C2—C12—C30—O4 | −166.14 (15) |
C10—C11—C12—C30 | −174.77 (13) | C11—C12—C30—O4 | −41.1 (2) |
C13—C11—C12—C30 | −48.71 (18) | C2—C12—C30—O3 | 16.81 (14) |
C10—C11—C12—C2 | −53.14 (15) | C11—C12—C30—O3 | 141.88 (13) |
C13—C11—C12—C2 | 72.92 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
C26—H26···O7i | 0.95 | 2.56 | 3.2130 (18) | 126 |
Symmetry code: (i) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C29H28ClNO7 |
Mr | 537.97 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 113 |
a, b, c (Å) | 10.0971 (14), 15.264 (2), 16.220 (2) |
V (Å3) | 2499.9 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.20 |
Crystal size (mm) | 0.20 × 0.18 × 0.12 |
Data collection | |
Diffractometer | Rigaku Saturn CCD area-detector diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2007) |
Tmin, Tmax | 0.960, 0.976 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26247, 5968, 5580 |
Rint | 0.044 |
(sin θ/λ)max (Å−1) | 0.658 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.066, 1.03 |
No. of reflections | 5968 |
No. of parameters | 350 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.18, −0.25 |
Absolute structure | Flack (1983), 2615 Friedel pairs |
Absolute structure parameter | 0.00 (4) |
Computer programs: CrystalClear (Rigaku, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C26—H26···O7i | 0.95 | 2.56 | 3.2130 (18) | 126.4 |
Symmetry code: (i) x, y−1, z. |
Acknowledgements
This work was supported by the National Natural Science Foundation of China (No. 30873363), the Program of the Science Foundation of Tianjin (08JCYBJC070000) and the Major Program of the Science Foundation of Tianjin (09ZCKFSH01700).
References
Feng, M., Zhao, M., Zhang, J., Yang, Z. & Chen, H. (2008). Acta Cryst. E64, o2339. Web of Science CSD CrossRef IUCr Journals Google Scholar
Rigaku. (2007). CrystalClear. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Zhang, Y. L., Tropsha, A., McPhail, A. T. & Lee, K. H. (1994). J. Med. Chem. 37, 1460–1464. CSD CrossRef CAS PubMed Web of Science Google Scholar
Zuo, S., Chen, H., Lu, Y., Cao, B. & Liu, D. (2009). Acta Cryst. E65, o3257. Web of Science CSD CrossRef IUCr Journals Google Scholar
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Podophyllotoxin and their derivatives are well known as substances with anti-cancer activity. In recent years, our study are paying attention to synthesize different kinds of Podophyllotoxin compounds and aim at the discovery of new derivatives with improved bioactivities. In this paper, we reported the crystal structure of title compound.
In title compound, C29H28ClNO7, bond lengths and angles are normal and in good agreement with those reported previously (Feng et al., 2008; Zhang, et al., 1994; Zuo, et al., 2009). The tetrahydrofuran ring (C1/C2/C12/C30/O3) and the six-membered ring (C2—C4/C10—C12)fused to it both display envelope conformations. The dihedral angles between the benzene ring (C4—C10) of the benzo[d]-[1,3]dioxole and the other two benzene ring (C13—C18 and C23—C28) are 80.59 (3) and 63.60 (2)°, respectively. There are weaker C—H···O intermolecular interactions, which stabilized the structure (Table 1).