organic compounds
4-{(4-Chlorophenyl)[4-(4-methylphenyl)-1,2,3-selenadiazol-5-yl]methyl}-4,5,6,7-tetrahydro-1,2,3-benzoselenadiazole
aCentre for Bioinformatics, School of Life Sciences, Pondicherry University, Puducherry 605 014, India, bDepartment of Bioinformatics, Alagappa University, Karaikudi 630 003, India, cDepartment of Industrial Chemistry, Alagappa University, Karaikudi 630 003, India, dDepartment of Organic Chemistry, Madurai Kamaraj University, Madurai 625 021, India, and eDepartment of Chemistry, Pondicherry University, Puducherry 605 014, India
*Correspondence e-mail: jjkanthan@gmail.com
In the title compound, C22H19ClN4Se2, the mean plane of the non-fused selenadiazole ring forms dihedral angles of 54.20 (16)° and 70.48 (11)°, respectively, with the essentially planar [maximum deviations of 0.025 (5) and 0.009 (2) Å, respectively] methylphenyl and chlorophenyl substituents. The tetrahydro-1,2,3-benzoselenadiazole group is disordered over two sets of sites with a refined occupancy ratio of 0.802 (5):0.198 (5). In the crystal, weak intermolecular C—H⋯N interactions are observed.
Related literature
For biological applications of 1,2,3-selenadiazole derivatives, see: Kuroda et al. (2001); El-Bahaie et al. (1990); El-Kashef et al. (1986); Plano et al. (2010); Padmavathi et al. (2002). For the structures of mono and bis-1,2,3-selenadiazole derivatives, see: Marx et al. (2008); Boag et al. (2010). For ring puckering analysis, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
10.1107/S160053681101751X/lh5230sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681101751X/lh5230Isup2.hkl
A mixture of 2-[1-(4-chloro-phenyl)-3-(4-methylphenyl)-3-oxopropyl]-1-cyclohexanone (1 mmol) and semicarbazide hydro-chloride (2.5 mmol) in ethanol (10 mL) was heated under reflux on a water bath for 3 h. After completion of the reaction as evident from TLC, the mixture was poured into ice-water (50 ml) and the resulting semicarbazone solid was filtered off. Then, a mixture of semicarbazone and SeO2 (3 mmol) in tetrahydrofuran (THF) (10 ml) were refluxed on a water bath for 30 min. After completion of the reaction as monitored by TLC, the reaction mixture was filtered to remove selenium powder, the filtrate was concentrated under vacuum, and the residue was subjected to
using petroleum ether/ethyl acetate mixture (95:5; v/v) as to afford the pure product. X-ray quality crystals were grown from a solution of the title compound in a 3:1 mixture of dichloromethane:ethylacetate in a partially closed 5ml glass vial over 7-8 days.All hydrogen atoms were placed in calculated positions, with C—H = 0.93 and included in the final cycles of
using a riding model with Uiso(H) = 1.2 Ueq(C). The atoms of the tetrahydro-1,2,3-benzoselenadiazole group are disordered with the refined site-occupancy ratios 0.802 (5):0.198 (5). The DFIX, SIMU, DELU and EADP commands in SHELXL (Sheldrick, 2008) were used to model the disorder.Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell
CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).C22H19ClN4Se2 | F(000) = 1056 |
Mr = 532.78 | Dx = 1.616 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2877 reflections |
a = 9.7226 (18) Å | θ = 2.7–29.4° |
b = 12.969 (4) Å | µ = 3.52 mm−1 |
c = 17.690 (3) Å | T = 293 K |
β = 100.959 (19)° | Block, blue |
V = 2189.9 (8) Å3 | 0.4 × 0.3 × 0.2 mm |
Z = 4 |
Oxford Diffraction Xcalibur Eos diffractometer | 3849 independent reflections |
Radiation source: fine-focus sealed tube | 2590 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
Detector resolution: 15.9821 pixels mm-1 | θmax = 25.0°, θmin = 2.7° |
ω scans | h = −11→11 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −15→13 |
Tmin = 0.516, Tmax = 1.000 | l = −20→21 |
8795 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.138 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0596P)2 + 0.3633P] where P = (Fo2 + 2Fc2)/3 |
3849 reflections | (Δ/σ)max = 0.001 |
255 parameters | Δρmax = 0.70 e Å−3 |
293 restraints | Δρmin = −0.68 e Å−3 |
C22H19ClN4Se2 | V = 2189.9 (8) Å3 |
Mr = 532.78 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.7226 (18) Å | µ = 3.52 mm−1 |
b = 12.969 (4) Å | T = 293 K |
c = 17.690 (3) Å | 0.4 × 0.3 × 0.2 mm |
β = 100.959 (19)° |
Oxford Diffraction Xcalibur Eos diffractometer | 3849 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 2590 reflections with I > 2σ(I) |
Tmin = 0.516, Tmax = 1.000 | Rint = 0.041 |
8795 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | 293 restraints |
wR(F2) = 0.138 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.70 e Å−3 |
3849 reflections | Δρmin = −0.68 e Å−3 |
255 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Se2 | 1.09476 (5) | 0.12061 (4) | 0.16057 (3) | 0.0585 (2) | |
Se1A | 0.8917 (3) | 0.22707 (11) | −0.19037 (8) | 0.0718 (5) | 0.802 (5) |
N1A | 1.0459 (4) | 0.1859 (6) | −0.1174 (3) | 0.0651 (10) | 0.802 (5) |
N2A | 1.0132 (5) | 0.1456 (10) | −0.0585 (4) | 0.0651 (10) | 0.802 (5) |
C1A | 0.8710 (5) | 0.1372 (9) | −0.0608 (4) | 0.0550 (7) | 0.802 (5) |
C2A | 0.7819 (4) | 0.1715 (6) | −0.1252 (2) | 0.0550 (7) | 0.802 (5) |
C3A | 0.6210 (4) | 0.1768 (5) | −0.1395 (3) | 0.0550 (7) | 0.802 (5) |
H3A1 | 0.5816 | 0.1386 | −0.1857 | 0.066* | 0.802 (5) |
H3A2 | 0.5902 | 0.2478 | −0.1464 | 0.066* | 0.802 (5) |
C4A | 0.5716 (6) | 0.1296 (5) | −0.0694 (3) | 0.0550 (7) | 0.802 (5) |
H4A1 | 0.4790 | 0.1003 | −0.0862 | 0.066* | 0.802 (5) |
H4A2 | 0.5637 | 0.1841 | −0.0330 | 0.066* | 0.802 (5) |
C5A | 0.6695 (6) | 0.0453 (5) | −0.0280 (5) | 0.0550 (7) | 0.802 (5) |
H5A1 | 0.6280 | 0.0150 | 0.0125 | 0.066* | 0.802 (5) |
H5A2 | 0.6802 | −0.0087 | −0.0644 | 0.066* | 0.802 (5) |
C6A | 0.8145 (7) | 0.0897 (9) | 0.0070 (3) | 0.0550 (7) | 0.802 (5) |
H6A | 0.8761 | 0.0329 | 0.0284 | 0.066* | 0.802 (5) |
Se1B | 0.9566 (8) | 0.2149 (5) | −0.1767 (3) | 0.0718 (5) | 0.198 (5) |
N1B | 1.0899 (15) | 0.176 (3) | −0.0914 (11) | 0.0651 (10) | 0.198 (5) |
N2B | 1.0313 (16) | 0.139 (5) | −0.0400 (17) | 0.0651 (10) | 0.198 (5) |
C1B | 0.8867 (16) | 0.136 (3) | −0.0542 (15) | 0.0550 (7) | 0.198 (5) |
C2B | 0.8184 (11) | 0.179 (2) | −0.1217 (9) | 0.0550 (7) | 0.198 (5) |
C3B | 0.6665 (17) | 0.150 (2) | −0.1572 (10) | 0.0550 (7) | 0.198 (5) |
H3B1 | 0.6636 | 0.0825 | −0.1811 | 0.066* | 0.198 (5) |
H3B2 | 0.6265 | 0.1999 | −0.1961 | 0.066* | 0.198 (5) |
C4B | 0.584 (2) | 0.1489 (19) | −0.0911 (12) | 0.0550 (7) | 0.198 (5) |
H4B1 | 0.5922 | 0.2149 | −0.0647 | 0.066* | 0.198 (5) |
H4B2 | 0.4856 | 0.1352 | −0.1107 | 0.066* | 0.198 (5) |
C5B | 0.649 (2) | 0.063 (2) | −0.0358 (17) | 0.0550 (7) | 0.198 (5) |
H5B1 | 0.5952 | 0.0559 | 0.0050 | 0.066* | 0.198 (5) |
H5B2 | 0.6416 | −0.0022 | −0.0637 | 0.066* | 0.198 (5) |
C6B | 0.803 (2) | 0.083 (3) | 0.0002 (14) | 0.0550 (7) | 0.198 (5) |
H6B | 0.8495 | 0.0184 | 0.0203 | 0.066* | 0.198 (5) |
C7 | 0.8116 (4) | 0.1691 (3) | 0.0701 (2) | 0.0381 (10) | |
H7 | 0.7625 | 0.2297 | 0.0451 | 0.046* | |
Cl1 | 0.46832 (17) | 0.03231 (15) | 0.30184 (9) | 0.0924 (6) | |
N3 | 1.1287 (4) | 0.3213 (4) | 0.1634 (2) | 0.0590 (11) | |
C8 | 0.7283 (4) | 0.1319 (4) | 0.1297 (2) | 0.0397 (11) | |
C14 | 0.9555 (4) | 0.2050 (4) | 0.1089 (2) | 0.0398 (11) | |
C15 | 0.9973 (4) | 0.3053 (4) | 0.1179 (2) | 0.0430 (11) | |
N4 | 1.1966 (4) | 0.2421 (4) | 0.1914 (3) | 0.0694 (13) | |
C12 | 0.6800 (5) | 0.0107 (4) | 0.2241 (3) | 0.0568 (13) | |
H12 | 0.7008 | −0.0501 | 0.2517 | 0.068* | |
C16 | 0.9173 (5) | 0.3976 (4) | 0.0856 (2) | 0.0431 (11) | |
C19 | 0.7582 (6) | 0.5702 (5) | 0.0261 (4) | 0.0690 (16) | |
C9 | 0.6174 (5) | 0.1898 (4) | 0.1437 (3) | 0.0525 (13) | |
H9 | 0.5960 | 0.2510 | 0.1166 | 0.063* | |
C11 | 0.5706 (5) | 0.0717 (5) | 0.2355 (3) | 0.0596 (15) | |
C10 | 0.5379 (5) | 0.1612 (5) | 0.1956 (3) | 0.0563 (14) | |
H10 | 0.4630 | 0.2016 | 0.2037 | 0.068* | |
C13 | 0.7581 (5) | 0.0413 (4) | 0.1711 (2) | 0.0507 (12) | |
H13 | 0.8325 | 0.0004 | 0.1629 | 0.061* | |
C17 | 0.8653 (6) | 0.4074 (4) | 0.0074 (3) | 0.0575 (14) | |
H17 | 0.8840 | 0.3561 | −0.0259 | 0.069* | |
C18 | 0.7867 (6) | 0.4917 (4) | −0.0218 (3) | 0.0696 (16) | |
H18 | 0.7521 | 0.4959 | −0.0745 | 0.084* | |
C21 | 0.8923 (6) | 0.4772 (4) | 0.1331 (3) | 0.0576 (13) | |
H21 | 0.9291 | 0.4741 | 0.1855 | 0.069* | |
C20 | 0.8137 (6) | 0.5610 (4) | 0.1034 (3) | 0.0709 (16) | |
H20 | 0.7975 | 0.6132 | 0.1367 | 0.085* | |
C22 | 0.6694 (7) | 0.6612 (6) | −0.0055 (4) | 0.115 (3) | |
H22A | 0.6222 | 0.6878 | 0.0333 | 0.173* | |
H22B | 0.6014 | 0.6399 | −0.0495 | 0.173* | |
H22C | 0.7280 | 0.7139 | −0.0206 | 0.173* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Se2 | 0.0497 (3) | 0.0567 (4) | 0.0679 (4) | 0.0162 (3) | 0.0084 (3) | 0.0100 (3) |
Se1A | 0.0962 (12) | 0.0770 (6) | 0.0489 (5) | 0.0015 (7) | 0.0308 (7) | 0.0137 (4) |
N1A | 0.077 (2) | 0.060 (3) | 0.069 (4) | 0.018 (3) | 0.038 (2) | 0.015 (3) |
N2A | 0.077 (2) | 0.060 (3) | 0.069 (4) | 0.018 (3) | 0.038 (2) | 0.015 (3) |
C1A | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
C2A | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
C3A | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
C4A | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
C5A | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
C6A | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
Se1B | 0.0962 (12) | 0.0770 (6) | 0.0489 (5) | 0.0015 (7) | 0.0308 (7) | 0.0137 (4) |
N1B | 0.077 (2) | 0.060 (3) | 0.069 (4) | 0.018 (3) | 0.038 (2) | 0.015 (3) |
N2B | 0.077 (2) | 0.060 (3) | 0.069 (4) | 0.018 (3) | 0.038 (2) | 0.015 (3) |
C1B | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
C2B | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
C3B | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
C4B | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
C5B | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
C6B | 0.0730 (15) | 0.0516 (16) | 0.0431 (13) | −0.0072 (14) | 0.0177 (12) | −0.0051 (10) |
C7 | 0.041 (2) | 0.038 (3) | 0.035 (2) | 0.007 (2) | 0.009 (2) | 0.0016 (19) |
Cl1 | 0.0783 (10) | 0.1362 (16) | 0.0753 (9) | −0.0163 (10) | 0.0468 (8) | −0.0029 (9) |
N3 | 0.052 (2) | 0.059 (3) | 0.064 (3) | −0.003 (2) | 0.004 (2) | −0.001 (2) |
C8 | 0.034 (2) | 0.047 (3) | 0.038 (2) | 0.004 (2) | 0.0054 (19) | −0.004 (2) |
C14 | 0.043 (2) | 0.040 (3) | 0.039 (2) | 0.008 (2) | 0.014 (2) | 0.003 (2) |
C15 | 0.036 (2) | 0.048 (3) | 0.045 (3) | 0.006 (2) | 0.010 (2) | −0.001 (2) |
N4 | 0.045 (2) | 0.085 (4) | 0.076 (3) | 0.006 (3) | 0.006 (2) | 0.008 (3) |
C12 | 0.052 (3) | 0.064 (4) | 0.056 (3) | 0.007 (3) | 0.014 (3) | 0.015 (3) |
C16 | 0.041 (2) | 0.043 (3) | 0.048 (3) | 0.003 (2) | 0.013 (2) | 0.002 (2) |
C19 | 0.060 (3) | 0.057 (4) | 0.094 (4) | 0.016 (3) | 0.027 (3) | 0.020 (3) |
C9 | 0.042 (3) | 0.063 (4) | 0.052 (3) | 0.011 (3) | 0.007 (2) | −0.005 (2) |
C11 | 0.042 (3) | 0.092 (5) | 0.047 (3) | −0.007 (3) | 0.014 (2) | −0.009 (3) |
C10 | 0.038 (3) | 0.075 (4) | 0.057 (3) | 0.011 (3) | 0.011 (2) | −0.014 (3) |
C13 | 0.044 (3) | 0.058 (3) | 0.053 (3) | 0.015 (3) | 0.017 (2) | 0.008 (2) |
C17 | 0.070 (3) | 0.048 (3) | 0.055 (3) | 0.000 (3) | 0.014 (3) | 0.005 (2) |
C18 | 0.079 (4) | 0.058 (4) | 0.065 (3) | 0.006 (4) | −0.003 (3) | 0.020 (3) |
C21 | 0.068 (3) | 0.050 (3) | 0.059 (3) | 0.004 (3) | 0.025 (3) | 0.004 (3) |
C20 | 0.085 (4) | 0.058 (4) | 0.082 (4) | 0.021 (3) | 0.046 (3) | 0.004 (3) |
C22 | 0.107 (6) | 0.104 (6) | 0.135 (6) | 0.053 (5) | 0.021 (5) | 0.038 (5) |
Se2—C14 | 1.843 (4) | C5B—H5B2 | 0.9700 |
Se2—N4 | 1.886 (5) | C6B—C7 | 1.66 (4) |
Se1A—C2A | 1.8585 (10) | C6B—H6B | 0.9800 |
Se1A—N1A | 1.8605 (11) | C7—C14 | 1.510 (6) |
N1A—N2A | 1.2601 (10) | C7—C8 | 1.526 (6) |
N2A—C1A | 1.3790 (10) | C7—H7 | 0.9800 |
C1A—C2A | 1.3688 (10) | Cl1—C11 | 1.753 (5) |
C1A—C6A | 1.5387 (10) | N3—N4 | 1.270 (6) |
C2A—C3A | 1.5385 (10) | N3—C15 | 1.390 (6) |
C3A—C4A | 1.5394 (10) | C8—C9 | 1.375 (6) |
C3A—H3A1 | 0.9700 | C8—C13 | 1.386 (6) |
C3A—H3A2 | 0.9700 | C14—C15 | 1.363 (6) |
C4A—C5A | 1.5396 (10) | C15—C16 | 1.482 (6) |
C4A—H4A1 | 0.9700 | C12—C11 | 1.371 (7) |
C4A—H4A2 | 0.9700 | C12—C13 | 1.372 (6) |
C5A—C6A | 1.5394 (10) | C12—H12 | 0.9300 |
C5A—H5A1 | 0.9700 | C16—C21 | 1.381 (6) |
C5A—H5A2 | 0.9700 | C16—C17 | 1.385 (6) |
C6A—C7 | 1.523 (11) | C19—C20 | 1.377 (8) |
C6A—H6A | 0.9800 | C19—C18 | 1.387 (8) |
Se1B—C2B | 1.8597 (11) | C19—C22 | 1.506 (8) |
Se1B—N1B | 1.8602 (11) | C9—C10 | 1.360 (7) |
N1B—N2B | 1.2600 (10) | C9—H9 | 0.9300 |
N2B—C1B | 1.3798 (10) | C11—C10 | 1.364 (7) |
C1B—C2B | 1.3698 (10) | C10—H10 | 0.9300 |
C1B—C6B | 1.5397 (10) | C13—H13 | 0.9300 |
C2B—C3B | 1.5398 (11) | C17—C18 | 1.377 (7) |
C3B—C4B | 1.5399 (10) | C17—H17 | 0.9300 |
C3B—H3B1 | 0.9700 | C18—H18 | 0.9300 |
C3B—H3B2 | 0.9700 | C21—C20 | 1.373 (7) |
C4B—C5B | 1.5398 (10) | C21—H21 | 0.9300 |
C4B—H4B1 | 0.9700 | C20—H20 | 0.9300 |
C4B—H4B2 | 0.9700 | C22—H22A | 0.9600 |
C5B—C6B | 1.5398 (11) | C22—H22B | 0.9600 |
C5B—H5B1 | 0.9700 | C22—H22C | 0.9600 |
C14—Se2—N4 | 86.7 (2) | C5B—C6B—C7 | 109 (3) |
C2A—Se1A—N1A | 86.59 (18) | C1B—C6B—H6B | 110.6 |
N2A—N1A—Se1A | 113.4 (3) | C5B—C6B—H6B | 110.6 |
N1A—N2A—C1A | 114.7 (4) | C7—C6B—H6B | 110.6 |
C2A—C1A—N2A | 118.1 (4) | C14—C7—C6A | 113.4 (4) |
C2A—C1A—C6A | 121.0 (4) | C14—C7—C8 | 110.6 (3) |
N2A—C1A—C6A | 120.9 (4) | C6A—C7—C8 | 112.3 (4) |
C1A—C2A—C3A | 127.9 (3) | C14—C7—C6B | 117.2 (8) |
C1A—C2A—Se1A | 107.2 (3) | C8—C7—C6B | 110.1 (7) |
C3A—C2A—Se1A | 124.6 (3) | C14—C7—H7 | 106.7 |
C2A—C3A—C4A | 108.3 (3) | C6A—C7—H7 | 106.7 |
C2A—C3A—H3A1 | 110.0 | C8—C7—H7 | 106.7 |
C4A—C3A—H3A1 | 110.0 | C6B—C7—H7 | 104.9 |
C2A—C3A—H3A2 | 110.0 | N4—N3—C15 | 117.2 (4) |
C4A—C3A—H3A2 | 110.0 | C9—C8—C13 | 117.4 (4) |
H3A1—C3A—H3A2 | 108.4 | C9—C8—C7 | 119.3 (4) |
C3A—C4A—C5A | 113.9 (5) | C13—C8—C7 | 123.3 (4) |
C3A—C4A—H4A1 | 108.8 | C15—C14—C7 | 125.3 (4) |
C5A—C4A—H4A1 | 108.8 | C15—C14—Se2 | 109.5 (3) |
C3A—C4A—H4A2 | 108.8 | C7—C14—Se2 | 124.9 (3) |
C5A—C4A—H4A2 | 108.8 | C14—C15—N3 | 115.6 (4) |
H4A1—C4A—H4A2 | 107.7 | C14—C15—C16 | 127.1 (4) |
C6A—C5A—C4A | 111.2 (5) | N3—C15—C16 | 117.4 (4) |
C6A—C5A—H5A1 | 109.4 | N3—N4—Se2 | 111.0 (3) |
C4A—C5A—H5A1 | 109.4 | C11—C12—C13 | 118.6 (5) |
C6A—C5A—H5A2 | 109.4 | C11—C12—H12 | 120.7 |
C4A—C5A—H5A2 | 109.4 | C13—C12—H12 | 120.7 |
H5A1—C5A—H5A2 | 108.0 | C21—C16—C17 | 117.7 (5) |
C7—C6A—C1A | 111.1 (8) | C21—C16—C15 | 120.7 (4) |
C7—C6A—C5A | 113.9 (7) | C17—C16—C15 | 121.6 (4) |
C1A—C6A—C5A | 105.8 (5) | C20—C19—C18 | 117.2 (5) |
C7—C6A—H6A | 108.7 | C20—C19—C22 | 121.8 (6) |
C1A—C6A—H6A | 108.7 | C18—C19—C22 | 121.0 (6) |
C5A—C6A—H6A | 108.7 | C10—C9—C8 | 122.6 (5) |
C2B—Se1B—N1B | 88.3 (7) | C10—C9—H9 | 118.7 |
N2B—N1B—Se1B | 110.4 (11) | C8—C9—H9 | 118.7 |
N1B—N2B—C1B | 117.5 (14) | C10—C11—C12 | 121.7 (5) |
C2B—C1B—N2B | 117.3 (12) | C10—C11—Cl1 | 119.2 (4) |
C2B—C1B—C6B | 120.3 (12) | C12—C11—Cl1 | 119.0 (5) |
N2B—C1B—C6B | 122.3 (14) | C9—C10—C11 | 118.4 (5) |
C1B—C2B—C3B | 121.5 (15) | C9—C10—H10 | 120.8 |
C1B—C2B—Se1B | 106.1 (9) | C11—C10—H10 | 120.8 |
C3B—C2B—Se1B | 125.5 (11) | C12—C13—C8 | 121.2 (4) |
C2B—C3B—C4B | 106.9 (12) | C12—C13—H13 | 119.4 |
C2B—C3B—H3B1 | 110.3 | C8—C13—H13 | 119.4 |
C4B—C3B—H3B1 | 110.3 | C18—C17—C16 | 121.3 (5) |
C2B—C3B—H3B2 | 110.3 | C18—C17—H17 | 119.4 |
C4B—C3B—H3B2 | 110.3 | C16—C17—H17 | 119.4 |
H3B1—C3B—H3B2 | 108.6 | C17—C18—C19 | 121.0 (5) |
C5B—C4B—C3B | 106.3 (15) | C17—C18—H18 | 119.5 |
C5B—C4B—H4B1 | 110.5 | C19—C18—H18 | 119.5 |
C3B—C4B—H4B1 | 110.5 | C20—C21—C16 | 120.6 (5) |
C5B—C4B—H4B2 | 110.5 | C20—C21—H21 | 119.7 |
C3B—C4B—H4B2 | 110.5 | C16—C21—H21 | 119.7 |
H4B1—C4B—H4B2 | 108.7 | C21—C20—C19 | 122.2 (5) |
C6B—C5B—C4B | 112.9 (16) | C21—C20—H20 | 118.9 |
C6B—C5B—H5B1 | 109.0 | C19—C20—H20 | 118.9 |
C4B—C5B—H5B1 | 109.0 | C19—C22—H22A | 109.5 |
C6B—C5B—H5B2 | 109.0 | C19—C22—H22B | 109.5 |
C4B—C5B—H5B2 | 109.0 | H22A—C22—H22B | 109.5 |
H5B1—C5B—H5B2 | 107.8 | C19—C22—H22C | 109.5 |
C1B—C6B—C5B | 114.0 (14) | H22A—C22—H22C | 109.5 |
C1B—C6B—C7 | 102 (3) | H22B—C22—H22C | 109.5 |
C2A—Se1A—N1A—N2A | −2.8 (7) | C5B—C6B—C7—C6A | −177 (17) |
Se1A—N1A—N2A—C1A | 1.9 (13) | C1B—C6B—C7—C8 | 177.6 (12) |
N1A—N2A—C1A—C2A | 0.5 (17) | C5B—C6B—C7—C8 | 56.9 (16) |
N1A—N2A—C1A—C6A | −179.9 (10) | C14—C7—C8—C9 | 109.2 (4) |
N2A—C1A—C2A—C3A | −175.9 (10) | C6A—C7—C8—C9 | −123.1 (5) |
C6A—C1A—C2A—C3A | 4.5 (16) | C6B—C7—C8—C9 | −119.7 (11) |
N2A—C1A—C2A—Se1A | −2.6 (14) | C14—C7—C8—C13 | −71.1 (5) |
C6A—C1A—C2A—Se1A | 177.8 (9) | C6A—C7—C8—C13 | 56.7 (6) |
N1A—Se1A—C2A—C1A | 2.8 (7) | C6B—C7—C8—C13 | 60.0 (12) |
N1A—Se1A—C2A—C3A | 176.3 (7) | C6A—C7—C14—C15 | 127.4 (5) |
C1A—C2A—C3A—C4A | −3.4 (12) | C8—C7—C14—C15 | −105.5 (5) |
Se1A—C2A—C3A—C4A | −175.6 (5) | C6B—C7—C14—C15 | 127.3 (10) |
C2A—C3A—C4A—C5A | −29.7 (8) | C6A—C7—C14—Se2 | −59.8 (5) |
C3A—C4A—C5A—C6A | 64.0 (7) | C8—C7—C14—Se2 | 67.3 (4) |
C2A—C1A—C6A—C7 | −97.8 (10) | C6B—C7—C14—Se2 | −59.9 (10) |
N2A—C1A—C6A—C7 | 82.7 (14) | N4—Se2—C14—C15 | 1.2 (3) |
C2A—C1A—C6A—C5A | 26.3 (14) | N4—Se2—C14—C7 | −172.6 (4) |
N2A—C1A—C6A—C5A | −153.3 (12) | C7—C14—C15—N3 | 172.5 (4) |
C4A—C5A—C6A—C7 | 64.0 (7) | Se2—C14—C15—N3 | −1.2 (5) |
C4A—C5A—C6A—C1A | −58.3 (10) | C7—C14—C15—C16 | −6.5 (7) |
C2B—Se1B—N1B—N2B | 5 (3) | Se2—C14—C15—C16 | 179.8 (3) |
Se1B—N1B—N2B—C1B | −2 (5) | N4—N3—C15—C14 | 0.5 (6) |
N1B—N2B—C1B—C2B | −3 (7) | N4—N3—C15—C16 | 179.6 (4) |
N1B—N2B—C1B—C6B | 174 (4) | C15—N3—N4—Se2 | 0.5 (5) |
N2B—C1B—C2B—C3B | 158 (4) | C14—Se2—N4—N3 | −1.0 (4) |
C6B—C1B—C2B—C3B | −18 (6) | C14—C15—C16—C21 | 125.1 (5) |
N2B—C1B—C2B—Se1B | 6 (5) | N3—C15—C16—C21 | −53.8 (6) |
C6B—C1B—C2B—Se1B | −170 (4) | C14—C15—C16—C17 | −55.1 (7) |
N1B—Se1B—C2B—C1B | −6 (3) | N3—C15—C16—C17 | 126.0 (5) |
N1B—Se1B—C2B—C3B | −157 (3) | C13—C8—C9—C10 | −0.2 (7) |
C1B—C2B—C3B—C4B | 45 (4) | C7—C8—C9—C10 | 179.5 (4) |
Se1B—C2B—C3B—C4B | −169 (2) | C13—C12—C11—C10 | 0.1 (8) |
C2B—C3B—C4B—C5B | −64 (2) | C13—C12—C11—Cl1 | 179.0 (4) |
C3B—C4B—C5B—C6B | 63 (3) | C8—C9—C10—C11 | 0.5 (7) |
C2B—C1B—C6B—C5B | 12 (6) | C12—C11—C10—C9 | −0.4 (8) |
N2B—C1B—C6B—C5B | −164 (5) | Cl1—C11—C10—C9 | −179.3 (4) |
C2B—C1B—C6B—C7 | −105 (4) | C11—C12—C13—C8 | 0.1 (7) |
N2B—C1B—C6B—C7 | 79 (5) | C9—C8—C13—C12 | −0.1 (7) |
C4B—C5B—C6B—C1B | −36 (5) | C7—C8—C13—C12 | −179.8 (4) |
C4B—C5B—C6B—C7 | 77 (2) | C21—C16—C17—C18 | −2.6 (7) |
C1A—C6A—C7—C14 | −65.9 (6) | C15—C16—C17—C18 | 177.6 (5) |
C5A—C6A—C7—C14 | 174.8 (4) | C16—C17—C18—C19 | 0.8 (9) |
C1A—C6A—C7—C8 | 167.9 (4) | C20—C19—C18—C17 | 1.1 (9) |
C5A—C6A—C7—C8 | 48.6 (7) | C22—C19—C18—C17 | −178.6 (6) |
C1A—C6A—C7—C6B | 112 (16) | C17—C16—C21—C20 | 2.6 (8) |
C5A—C6A—C7—C6B | −7 (16) | C15—C16—C21—C20 | −177.6 (5) |
C1B—C6B—C7—C14 | −54.9 (18) | C16—C21—C20—C19 | −0.8 (9) |
C5B—C6B—C7—C14 | −175.7 (10) | C18—C19—C20—C21 | −1.1 (9) |
C1B—C6B—C7—C6A | −57 (15) | C22—C19—C20—C21 | 178.6 (6) |
D—H···A | D—H | H···A | D···A | D—H···A |
C6A—H6A···N2Ai | 0.98 | 2.57 | 3.517 (16) | 164 |
C10—H10···N4ii | 0.93 | 2.61 | 3.467 (7) | 153 |
C12—H12···N3iii | 0.93 | 2.61 | 3.470 (7) | 153 |
Symmetry codes: (i) −x+2, −y, −z; (ii) x−1, y, z; (iii) −x+2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C22H19ClN4Se2 |
Mr | 532.78 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 9.7226 (18), 12.969 (4), 17.690 (3) |
β (°) | 100.959 (19) |
V (Å3) | 2189.9 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 3.52 |
Crystal size (mm) | 0.4 × 0.3 × 0.2 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Eos diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.516, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8795, 3849, 2590 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.138, 1.04 |
No. of reflections | 3849 |
No. of parameters | 255 |
No. of restraints | 293 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.70, −0.68 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2009), CrysAlis RED (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C6A—H6A···N2Ai | 0.98 | 2.57 | 3.517 (16) | 164 |
C10—H10···N4ii | 0.93 | 2.61 | 3.467 (7) | 153 |
C12—H12···N3iii | 0.93 | 2.61 | 3.470 (7) | 153 |
Symmetry codes: (i) −x+2, −y, −z; (ii) x−1, y, z; (iii) −x+2, y−1/2, −z+1/2. |
Footnotes
‡Additional correspondence author, e-mail: krishstrucbio@gmail.com.
Acknowledgements
RK and JM thank the Centre for Bioinformatics (funded by the Department of Biotechnology and the Department of Information Technology, New Delhi, India), Pondicherry University and JJ thanks the Department of Organic Chemistry, Madurai Kamaraj University, for providing the facilities for the synthesis of the title compound, and the Department of Bioinformatics, Alagappa University for providing the computational facilities to carry out this research work. JJ also thanks Binoy Krishna Saha, Assistant Professor, Department of Chemistry, Pondicherry University, for providing the X-ray facility. JM also thanks the Council for Scientific and Industrial Research (CSIR) for a Senior Research Fellowship (SRF).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Selenium containing compounds like 1,2,3-selenadiazole are of increasing interest because of their unique chemical properties and have several important biological applications such as anti-fungal (Kuroda et al., 2001), anti-bacterial (El-Kashef et al.,1986), anti-microbial (El-Bahaie et al., 1990), anti-cancer (Plano et al., 2010) and insecticidal (Padmavathi et al., 2002) activities. In view of the growing importances of selenium containing compounds, we present herein the single-crystal structure of the title compound (I).
Some mono and bis-1,2,3-selenadiazole derivatives are already reported in the literature (Marx et al., 2008; Boag et al., 2010). The molecular structure of the title compound is shown in Fig. 1. The puckering analysis (Cremer & Pople, 1975) for the atoms C1A/C2A/C3A/C4A/C5A/C6A (belonging to the major component of disorder) of the 4,5,6,7-tetrahydrobenzo[d][1,2,3]selenadiazole group in (I) adopt an envelope conformation (E form) with puckering parameters of Q = 0.536 (8) Å, θ = 56.1 (8)° and Φ = 239.0 (10)°. The tetrahydro-1,2,3-benzoselenadiazole group is disordered with the refined site-occupancy ratios 0.802 (5):0.198 (5). The hetrocyclic ring (Se2/C14/C15/N3/N4) makes dihedral angles of 54.20 (16)° and 70.48 (11)°, respectively with the essentially planar atoms C16-C22 [maximum deviation 0.025 (5) Å for C16] and atoms C8-C13/Cl1 [maximum deviation of 0.009 (2)Å for Cl1]. The crystal packing (Fig. 2) is stabilized by weak intermolecular C—H···N interactions.