metal-organic compounds
A triclinic polymorph of bis(μ2-ethanethiolato)-1:2κ2S:S;3:4κ2S:S-(μ4-disulfido-1:2:3:4κ4S:S:S′:S′)tetrakis[tricarbonyliron(II)](2 Fe—Fe)
aKey Laboratory of Humid Subtropical Eco-Geographical Processes, Ministry of Education, Fujian Normal University, Fuzhou 350007, People's Republic of China, and bState Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Fuzhou, Fujian 350002, People's Republic of China
*Correspondence e-mail: siyoutao@gmail.com
Next to the monoclinic polymorph [Cheng et al. (2005). Acta Cryst. E61, m892–m894], the triclinic title compound, [Fe4(C2H5S)2(S2)(CO)12], is the second known form of this composition. The structure is composed of an [Fe2(C2H5S)(S)(CO)6] subcluster, which is linked to its counterpart by an inversion centre located at the mid-point of the central disulfide bond. The Fe2S2 core of each subcluster exhibits a butterfly-like shape, with two S atoms bridging two Fe atoms. In the subcluster, each Fe atom is coordinated in a distorted octahedral coordination by three terminal carbonyl C atoms, two S atoms and one Fe atom. The crystal packing is accomplished through van der Waals interactions.
Related literature
For more details about hydrogenases, including Fe—Fe hydrogenases, see: Darensbourg et al. (2000). Two procedures are mainly used for the synthesis of model compounds containing the Fe2S2 subcluster of Fe—Fe hydrogenases, see: Lawrence et al. (2001); Li & Rauchfuss (2002). The monoclinic polymorph (space group P21/c) of the title compound has been reported by Cheng et al. (2005).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2002); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: WinGX (Farrugia, 1999); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811017405/wm2485sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811017405/wm2485Isup2.hkl
All experiments were carried out under an atmosphere of purified, oxygen-free and dry nitrogen using standard Schlenk techniques. THF and hexane were dried and freshly distilled prior to use according to standard methods. The commercially available products paraformaldehyde, [Fe(CO)5], LiBEt3H, F3CCOOH and C5H9NH2 were of reagent grade and were used as received. The starting material [Fe2S2(CO)6] was prepared according to the literature.
[Fe2S2(CO)6] (1 mmol, 0.344 g) was dissolved in dry THF (40 ml) under a nitrogen atmosphere and then cooled to 195 K with acetone and liquid nitrogen. After the solution was stirred for 30 minutes, LiBEt3H (2 mmol) was added dropwise very slowly. At the midpoint of the addition, the color of the reaction mixture turned from red to dark green; for the rest of addition it remained green. After another 30 minutes, F3CCOOH (2 mmol, 0.149 ml) was added. The new mixture was stirred for an additional hour. The cool solution was added to a mixture of paraformaldehyde (40 mmol, 1.2 g) and C5H9NH2 (1 mmol, 1.98 ml) in THF which had been stirred for 10 h and cooled to 273 K. The last mixture was stirred for 24 h and the majority of the solvent was evaporated under vacuum. The remaining residual was filtered through silica gel. A red fraction was collected by elution with hexane. Recrystallization of the crude product from fresh distilled pentane in a fridge at 253 K for several days gave the title complex as a by-product in low and varing yields (<5%).
Hydrogen atoms were placed at idealized positions and allowed to ride on their parent atoms, with CH2 and CH3 bonds set equal to 0.97 and 0.96 Å, respectively and Uiso(H)=1.2Ueq(C) for hydrogen atoms of C7, and Uiso (H)=1.5Ueq (C) for hydrogen atoms of C8. The highest residual peak was located at 0.88 Å from S1.
Data collection: CrystalClear (Rigaku, 2002); cell
CrystalClear (Rigaku, 2002); data reduction: CrystalClear (Rigaku, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: WinGX (Farrugia, 1999); software used to prepare material for publication: publCIF (Westrip, 2010).[Fe4(C2H5S)2(S2)(CO)12] | Z = 1 |
Mr = 745.88 | F(000) = 370 |
Triclinic, P1 | Dx = 1.826 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.365 (4) Å | Cell parameters from 1200 reflections |
b = 9.296 (5) Å | θ = 2.1–27.5° |
c = 10.209 (5) Å | µ = 2.46 mm−1 |
α = 87.57 (2)° | T = 293 K |
β = 70.082 (17)° | Prism, orange |
γ = 66.103 (17)° | 0.15 × 0.12 × 0.03 mm |
V = 678.2 (6) Å3 |
Rigaku Mercury70 CCD diffractometer | 3060 independent reflections |
Radiation source: fine-focus sealed tube | 1939 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
CCD_Profile_fitting scans | θmax = 27.5°, θmin = 2.4° |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2002) | h = −10→10 |
Tmin = 0.771, Tmax = 1.000 | k = −11→11 |
5323 measured reflections | l = −12→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.100 | H-atom parameters constrained |
S = 0.99 | w = 1/[σ2(Fo2) + (0.0419P)2] where P = (Fo2 + 2Fc2)/3 |
3060 reflections | (Δ/σ)max < 0.001 |
163 parameters | Δρmax = 0.39 e Å−3 |
0 restraints | Δρmin = −0.42 e Å−3 |
[Fe4(C2H5S)2(S2)(CO)12] | γ = 66.103 (17)° |
Mr = 745.88 | V = 678.2 (6) Å3 |
Triclinic, P1 | Z = 1 |
a = 8.365 (4) Å | Mo Kα radiation |
b = 9.296 (5) Å | µ = 2.46 mm−1 |
c = 10.209 (5) Å | T = 293 K |
α = 87.57 (2)° | 0.15 × 0.12 × 0.03 mm |
β = 70.082 (17)° |
Rigaku Mercury70 CCD diffractometer | 3060 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2002) | 1939 reflections with I > 2σ(I) |
Tmin = 0.771, Tmax = 1.000 | Rint = 0.036 |
5323 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.100 | H-atom parameters constrained |
S = 0.99 | Δρmax = 0.39 e Å−3 |
3060 reflections | Δρmin = −0.42 e Å−3 |
163 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Fe1 | 0.31028 (8) | 1.00320 (7) | 0.78114 (6) | 0.03542 (19) | |
Fe2 | 0.33627 (9) | 0.73745 (7) | 0.86174 (7) | 0.03887 (19) | |
S1 | 0.06448 (15) | 0.94806 (12) | 0.89480 (11) | 0.0364 (3) | |
S2 | 0.37128 (16) | 0.79317 (13) | 0.63756 (12) | 0.0425 (3) | |
O2 | 0.2904 (5) | 1.1642 (4) | 1.0304 (4) | 0.0659 (10) | |
O1 | 0.7064 (5) | 0.9407 (5) | 0.6498 (4) | 0.0765 (12) | |
O3 | 0.1430 (6) | 1.2810 (4) | 0.6441 (4) | 0.0801 (13) | |
O5 | 0.3256 (6) | 0.7693 (4) | 1.1491 (4) | 0.0767 (12) | |
C1 | 0.5507 (7) | 0.9675 (5) | 0.6996 (5) | 0.0485 (12) | |
O6 | 0.7439 (5) | 0.5643 (5) | 0.7670 (5) | 0.0864 (14) | |
C3 | 0.2065 (7) | 1.1746 (6) | 0.6958 (5) | 0.0477 (12) | |
C6 | 0.5855 (8) | 0.6296 (6) | 0.8033 (5) | 0.0559 (14) | |
C2 | 0.2944 (6) | 1.1039 (5) | 0.9341 (5) | 0.0444 (11) | |
C5 | 0.3261 (7) | 0.7589 (5) | 1.0381 (6) | 0.0527 (13) | |
C4 | 0.2657 (8) | 0.5763 (6) | 0.8735 (6) | 0.0601 (14) | |
O4 | 0.2224 (8) | 0.4741 (5) | 0.8805 (6) | 0.1078 (17) | |
C7 | 0.1744 (7) | 0.8070 (6) | 0.5873 (5) | 0.0546 (13) | |
H7A | 0.0604 | 0.8465 | 0.6691 | 0.065* | |
H7B | 0.1589 | 0.8820 | 0.5186 | 0.065* | |
C8 | 0.2037 (11) | 0.6549 (7) | 0.5290 (9) | 0.124 (3) | |
H8A | 0.0984 | 0.6666 | 0.5044 | 0.187* | |
H8B | 0.2173 | 0.5809 | 0.5972 | 0.187* | |
H8C | 0.3149 | 0.6166 | 0.4468 | 0.187* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Fe1 | 0.0322 (4) | 0.0369 (4) | 0.0375 (4) | −0.0163 (3) | −0.0103 (3) | 0.0028 (3) |
Fe2 | 0.0377 (4) | 0.0317 (3) | 0.0461 (4) | −0.0122 (3) | −0.0159 (3) | 0.0021 (3) |
S1 | 0.0297 (6) | 0.0386 (6) | 0.0380 (6) | −0.0142 (5) | −0.0079 (5) | −0.0008 (5) |
S2 | 0.0354 (6) | 0.0472 (7) | 0.0405 (6) | −0.0142 (5) | −0.0110 (5) | −0.0050 (5) |
O2 | 0.078 (3) | 0.079 (2) | 0.058 (2) | −0.048 (2) | −0.024 (2) | −0.0046 (19) |
O1 | 0.044 (2) | 0.109 (3) | 0.076 (3) | −0.041 (2) | −0.008 (2) | 0.001 (2) |
O3 | 0.086 (3) | 0.063 (2) | 0.086 (3) | −0.018 (2) | −0.042 (3) | 0.027 (2) |
O5 | 0.092 (3) | 0.077 (3) | 0.057 (2) | −0.020 (2) | −0.040 (2) | 0.009 (2) |
C1 | 0.045 (3) | 0.055 (3) | 0.046 (3) | −0.025 (3) | −0.011 (2) | 0.005 (2) |
O6 | 0.045 (2) | 0.079 (3) | 0.110 (3) | 0.004 (2) | −0.029 (2) | −0.025 (2) |
C3 | 0.052 (3) | 0.048 (3) | 0.045 (3) | −0.022 (2) | −0.019 (2) | 0.008 (2) |
C6 | 0.049 (3) | 0.049 (3) | 0.066 (4) | −0.010 (3) | −0.026 (3) | −0.005 (3) |
C2 | 0.037 (3) | 0.049 (3) | 0.053 (3) | −0.024 (2) | −0.015 (2) | 0.007 (2) |
C5 | 0.053 (3) | 0.043 (3) | 0.056 (3) | −0.010 (2) | −0.023 (3) | 0.008 (2) |
C4 | 0.075 (4) | 0.047 (3) | 0.071 (4) | −0.030 (3) | −0.036 (3) | 0.015 (3) |
O4 | 0.150 (5) | 0.074 (3) | 0.149 (4) | −0.078 (3) | −0.076 (4) | 0.033 (3) |
C7 | 0.050 (3) | 0.062 (3) | 0.058 (3) | −0.021 (3) | −0.027 (3) | −0.001 (3) |
C8 | 0.131 (7) | 0.086 (5) | 0.194 (9) | −0.029 (5) | −0.116 (7) | −0.027 (5) |
Fe1—C1 | 1.786 (5) | O2—C2 | 1.137 (5) |
Fe1—C2 | 1.793 (5) | O1—C1 | 1.145 (5) |
Fe1—C3 | 1.824 (5) | O3—C3 | 1.123 (5) |
Fe1—S1 | 2.2393 (15) | O5—C5 | 1.140 (6) |
Fe1—S2 | 2.2688 (16) | O6—C6 | 1.138 (6) |
Fe1—Fe2 | 2.5183 (15) | C4—O4 | 1.138 (6) |
Fe2—C5 | 1.789 (5) | C7—C8 | 1.451 (7) |
Fe2—C6 | 1.794 (5) | C7—H7A | 0.9700 |
Fe2—C4 | 1.806 (5) | C7—H7B | 0.9700 |
Fe2—S1 | 2.2457 (15) | C8—H8A | 0.9600 |
Fe2—S2 | 2.2711 (18) | C8—H8B | 0.9600 |
S1—S1i | 2.113 (2) | C8—H8C | 0.9600 |
S2—C7 | 1.842 (5) | ||
C1—Fe1—C2 | 90.8 (2) | C4—Fe2—Fe1 | 149.28 (16) |
C1—Fe1—C3 | 99.4 (2) | S1—Fe2—Fe1 | 55.72 (4) |
C2—Fe1—C3 | 99.1 (2) | S2—Fe2—Fe1 | 56.27 (4) |
C1—Fe1—S1 | 157.40 (15) | S1i—S1—Fe1 | 111.12 (8) |
C2—Fe1—S1 | 94.02 (15) | S1i—S1—Fe2 | 111.36 (8) |
C3—Fe1—S1 | 101.64 (16) | Fe1—S1—Fe2 | 68.32 (5) |
C1—Fe1—S2 | 87.52 (16) | C7—S2—Fe1 | 114.87 (16) |
C2—Fe1—S2 | 156.70 (15) | C7—S2—Fe2 | 113.05 (18) |
C3—Fe1—S2 | 104.06 (16) | Fe1—S2—Fe2 | 67.38 (5) |
S1—Fe1—S2 | 79.39 (5) | O1—C1—Fe1 | 177.8 (5) |
C1—Fe1—Fe2 | 101.44 (15) | O3—C3—Fe1 | 179.3 (5) |
C2—Fe1—Fe2 | 101.42 (15) | O6—C6—Fe2 | 178.4 (5) |
C3—Fe1—Fe2 | 150.37 (16) | O2—C2—Fe1 | 177.7 (4) |
S1—Fe1—Fe2 | 55.96 (4) | O5—C5—Fe2 | 177.8 (5) |
S2—Fe1—Fe2 | 56.35 (5) | O4—C4—Fe2 | 179.6 (6) |
C5—Fe2—C6 | 90.6 (2) | C8—C7—S2 | 111.8 (4) |
C5—Fe2—C4 | 99.0 (2) | C8—C7—H7A | 109.3 |
C6—Fe2—C4 | 100.4 (2) | S2—C7—H7A | 109.3 |
C5—Fe2—S1 | 94.44 (15) | C8—C7—H7B | 109.3 |
C6—Fe2—S1 | 156.35 (18) | S2—C7—H7B | 109.3 |
C4—Fe2—S1 | 101.55 (18) | H7A—C7—H7B | 107.9 |
C5—Fe2—S2 | 158.11 (17) | C7—C8—H8A | 109.5 |
C6—Fe2—S2 | 87.54 (17) | C7—C8—H8B | 109.5 |
C4—Fe2—S2 | 102.75 (18) | H8A—C8—H8B | 109.5 |
S1—Fe2—S2 | 79.21 (5) | C7—C8—H8C | 109.5 |
C5—Fe2—Fe1 | 102.83 (16) | H8A—C8—H8C | 109.5 |
C6—Fe2—Fe1 | 100.63 (17) | H8B—C8—H8C | 109.5 |
Symmetry code: (i) −x, −y+2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | [Fe4(C2H5S)2(S2)(CO)12] |
Mr | 745.88 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 8.365 (4), 9.296 (5), 10.209 (5) |
α, β, γ (°) | 87.57 (2), 70.082 (17), 66.103 (17) |
V (Å3) | 678.2 (6) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 2.46 |
Crystal size (mm) | 0.15 × 0.12 × 0.03 |
Data collection | |
Diffractometer | Rigaku Mercury70 CCD diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2002) |
Tmin, Tmax | 0.771, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5323, 3060, 1939 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.100, 0.99 |
No. of reflections | 3060 |
No. of parameters | 163 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.39, −0.42 |
Computer programs: CrystalClear (Rigaku, 2002), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), WinGX (Farrugia, 1999), publCIF (Westrip, 2010).
Fe1—C1 | 1.786 (5) | Fe2—C5 | 1.789 (5) |
Fe1—C2 | 1.793 (5) | Fe2—C6 | 1.794 (5) |
Fe1—C3 | 1.824 (5) | Fe2—C4 | 1.806 (5) |
Fe1—S1 | 2.2393 (15) | Fe2—S1 | 2.2457 (15) |
Fe1—S2 | 2.2688 (16) | Fe2—S2 | 2.2711 (18) |
Fe1—Fe2 | 2.5183 (15) | S1—S1i | 2.113 (2) |
Symmetry code: (i) −x, −y+2, −z+2. |
Acknowledgements
We thank the National Natural Science Foundation of China (21071145) for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Fe—Fe hydrogenases are enzymes capable of efficiently catalysing the reversible transformation between H+ and H2 (Darensbourg et al., 2000). Chemists have been trying to achieve H2 production technologies of practical use by studying the catalytic process by such kind of hydrogenases, aiming at solving the current energy problem. The well known active site of Fe—Fe hydrogenases, established by X-ray crystallographic and spectroscopic techniques, has an Fe2S2 cluster linked to a Fe4S4 cuboidal unit by a cysteine-S atom. While the Fe4S4 unit is assumed to be reponsible for transferring eletrons, the Fe2S2 cluster plays an important role in the catalysis process. Thus, many works concentrate on compounds containing the Fe2S2 cluster.
Two kinds of procedures are frequently used to synthesize model substances of the Fe2S2 cluster, e.g. Fe2(SCH2)2NR(CO)6. The first procedure is a condensation of (ClCH2)2NR and Li2[Fe2S2(CO)6], and the second is a condensation of Fe2(SH)2(CO)6 with formaldehyde in the presence of primary amines (Lawrence et al., 2001; Li & Rauchfuss, 2002). In both cases, LiEt3BH are used to cleave the S—S bond of the starting material Fe2S2(CO)6. When trying to get some new complexes using the first procedure, we found some by-products which reflect the diversity of the reactivity of (FeS)n clusters. Here we report a triclinic polymorph, (I), of [Fe4(C2H5S)2(S2)(CO)12]. Another monoclinic polymorph (space group P21/c) has been reported previously (Cheng et al., 2005).
As can be seen in Fig. 1, the crystallographically imposed center of inversion is located at the mid-point of the S1—S1A bond, and thus the asymmetric unit contains one half of the [Fe4(C2H5S)2(S2)(CO)12] formula unit. The two Fe atoms of the asymmetric unit (Fe1, Fe2) are linked through an Fe—Fe single bond and are bridged by two S atoms (S1, S2). Thus a butterfly-like arrangement is formed, with a dihedral angle between the two Fe2S planes being 100.53 (6)°. The average Fe—S bond length is 2.256 (16) Å, and the average Fe—S—Fe angle is 67.9 (6)°. The octahedral coordination geometry around each Fe atom is completed by three carbonyl C atoms [average Fe—C distance 1.799 (14) Å, average C—Fe—C angle 97 (4)°].
The packing diagram is shown in Fig. 2. There is only one molecule in each unit cell, and neighbouring molecules pack along the a axis; the crystal is stabilized by van der Waals interactions.
In comparison with the monoclinic polymorph (Cheng et al., 2005), the configuration of the [Fe4(C2H5S)2(S2)(CO)12] molecules is different, just like the packing in the crystal.