organic compounds
5-Chloro-2-hydroxybenzaldehyde 4-ethylthiosemicarbazone
aDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: seikweng@um.edu.my
In the title compound, C10H12ClN3OS, the –C=N–N–C– chain bridging the ethylimino group and the benzene ring adopts an extended conformation with a C—N—N—C torsion angle of −171.98 (11)°. The imino H atom of the chain is a hydrogen-bond donor to the S atom of an inversion-related molecule, forming a supramolecular dimer. The hydroxy H atom is intramolecularly hydrogen bonded to the azomethine N atom.
Related literature
For the salicylaldehyde 4-methylthiosemicarbazone homolog, see: Vrdoljak et al. (2005).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S160053681101796X/xu5210sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681101796X/xu5210Isup2.hkl
Supporting information file. DOI: 10.1107/S160053681101796X/xu5210Isup3.cml
5-Chloro-2-hydroxybenzaldehyde (3.1 g, 20 mol) and of 4-ethyl-3-thiosemicarbazide (2.4 g, 20 mmol) were heated in ethanol (100 ml) for an hour. The solution was filtered and colorless crystals were obtained upon slow evaporation of the solvent.
Carbon-bound H-atoms were placed in calculated positions (C—H 0.95 to 0.99 Å) and were included in the
in the riding model approximation, with Uiso(H) =1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for the others. The hydroxy and amino H atoms were located in a difference Fourier map, and were refined with distance restraints of O—H 0.84±0.01 and N—H 0.88±0.01 Å; their temperature factors were freely refined.Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. Thermal ellipsoid plot (Barbour, 2001) of C10H12ClN3OS at the 70% probability level; hydrogen atoms are drawn as spheres of arbitrary radius. |
C10H12ClN3OS | F(000) = 1072 |
Mr = 257.74 | Dx = 1.437 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 6011 reflections |
a = 21.7956 (3) Å | θ = 2.8–28.3° |
b = 11.8536 (2) Å | µ = 0.48 mm−1 |
c = 9.4155 (1) Å | T = 100 K |
β = 101.6870 (9)° | Block, colorless |
V = 2382.12 (6) Å3 | 0.40 × 0.40 × 0.40 mm |
Z = 8 |
Bruker SMART APEX diffractometer | 2985 independent reflections |
Radiation source: fine-focus sealed tube | 2582 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
ω scans | θmax = 28.4°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −29→29 |
Tmin = 0.832, Tmax = 0.832 | k = −15→15 |
11204 measured reflections | l = −12→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.029 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0483P)2 + 1.7745P] where P = (Fo2 + 2Fc2)/3 |
2985 reflections | (Δ/σ)max = 0.001 |
157 parameters | Δρmax = 0.33 e Å−3 |
3 restraints | Δρmin = −0.28 e Å−3 |
C10H12ClN3OS | V = 2382.12 (6) Å3 |
Mr = 257.74 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 21.7956 (3) Å | µ = 0.48 mm−1 |
b = 11.8536 (2) Å | T = 100 K |
c = 9.4155 (1) Å | 0.40 × 0.40 × 0.40 mm |
β = 101.6870 (9)° |
Bruker SMART APEX diffractometer | 2985 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2582 reflections with I > 2σ(I) |
Tmin = 0.832, Tmax = 0.832 | Rint = 0.022 |
11204 measured reflections |
R[F2 > 2σ(F2)] = 0.029 | 3 restraints |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.33 e Å−3 |
2985 reflections | Δρmin = −0.28 e Å−3 |
157 parameters |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.485785 (16) | 0.65980 (4) | 0.51634 (4) | 0.03990 (13) | |
S1 | 0.835591 (14) | 0.65767 (3) | −0.01381 (3) | 0.01821 (10) | |
O1 | 0.75861 (4) | 0.62629 (8) | 0.57947 (10) | 0.01950 (19) | |
N1 | 0.73919 (5) | 0.61554 (8) | 0.29057 (11) | 0.0159 (2) | |
N2 | 0.75536 (5) | 0.63100 (9) | 0.15711 (11) | 0.0167 (2) | |
N3 | 0.85219 (5) | 0.55435 (9) | 0.24435 (11) | 0.0169 (2) | |
C1 | 0.69537 (6) | 0.62896 (10) | 0.56025 (13) | 0.0160 (2) | |
C2 | 0.66935 (6) | 0.63906 (10) | 0.68348 (14) | 0.0189 (2) | |
H2 | 0.6959 | 0.6406 | 0.7769 | 0.023* | |
C3 | 0.60511 (6) | 0.64685 (11) | 0.67054 (14) | 0.0215 (3) | |
H3 | 0.5875 | 0.6549 | 0.7544 | 0.026* | |
C4 | 0.56661 (6) | 0.64280 (12) | 0.53368 (15) | 0.0230 (3) | |
C5 | 0.59099 (6) | 0.63056 (11) | 0.41045 (14) | 0.0203 (3) | |
H5 | 0.5638 | 0.6262 | 0.3180 | 0.024* | |
C6 | 0.65605 (5) | 0.62453 (10) | 0.42189 (13) | 0.0160 (2) | |
C7 | 0.68017 (5) | 0.62429 (10) | 0.28864 (13) | 0.0166 (2) | |
H7 | 0.6517 | 0.6307 | 0.1982 | 0.020* | |
C8 | 0.81461 (5) | 0.61070 (10) | 0.14031 (12) | 0.0152 (2) | |
C9 | 0.91574 (5) | 0.51980 (11) | 0.23606 (13) | 0.0199 (2) | |
H9A | 0.9414 | 0.5132 | 0.3353 | 0.024* | |
H9B | 0.9350 | 0.5783 | 0.1840 | 0.024* | |
C10 | 0.91595 (6) | 0.40780 (12) | 0.15821 (14) | 0.0235 (3) | |
H10A | 0.9591 | 0.3872 | 0.1542 | 0.035* | |
H10B | 0.8911 | 0.4144 | 0.0594 | 0.035* | |
H10C | 0.8977 | 0.3494 | 0.2107 | 0.035* | |
H1O | 0.7673 (10) | 0.6201 (18) | 0.4975 (14) | 0.057 (6)* | |
H2N | 0.7319 (6) | 0.6770 (11) | 0.0975 (14) | 0.017 (4)* | |
H3N | 0.8351 (7) | 0.5207 (13) | 0.3075 (15) | 0.026 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.01591 (17) | 0.0783 (3) | 0.0285 (2) | 0.00085 (16) | 0.01169 (14) | 0.00069 (17) |
S1 | 0.01839 (16) | 0.02150 (16) | 0.01680 (15) | 0.00297 (10) | 0.00847 (12) | 0.00232 (11) |
O1 | 0.0152 (4) | 0.0239 (5) | 0.0195 (4) | 0.0018 (3) | 0.0039 (3) | 0.0007 (4) |
N1 | 0.0165 (5) | 0.0162 (5) | 0.0165 (5) | 0.0003 (4) | 0.0072 (4) | 0.0002 (4) |
N2 | 0.0151 (5) | 0.0210 (5) | 0.0152 (5) | 0.0030 (4) | 0.0061 (4) | 0.0030 (4) |
N3 | 0.0144 (4) | 0.0207 (5) | 0.0166 (5) | 0.0012 (4) | 0.0055 (4) | 0.0015 (4) |
C1 | 0.0163 (5) | 0.0135 (5) | 0.0189 (5) | 0.0006 (4) | 0.0054 (4) | 0.0010 (4) |
C2 | 0.0218 (6) | 0.0191 (6) | 0.0163 (5) | −0.0002 (4) | 0.0047 (5) | −0.0004 (4) |
C3 | 0.0241 (6) | 0.0238 (6) | 0.0193 (6) | −0.0001 (5) | 0.0106 (5) | 0.0001 (5) |
C4 | 0.0152 (6) | 0.0318 (7) | 0.0241 (6) | −0.0007 (5) | 0.0092 (5) | 0.0011 (5) |
C5 | 0.0172 (6) | 0.0263 (6) | 0.0183 (6) | −0.0019 (5) | 0.0053 (5) | 0.0013 (5) |
C6 | 0.0163 (5) | 0.0162 (5) | 0.0170 (5) | −0.0007 (4) | 0.0070 (4) | 0.0003 (4) |
C7 | 0.0164 (5) | 0.0175 (5) | 0.0167 (5) | −0.0009 (4) | 0.0053 (4) | 0.0006 (4) |
C8 | 0.0148 (5) | 0.0157 (5) | 0.0159 (5) | −0.0010 (4) | 0.0047 (4) | −0.0031 (4) |
C9 | 0.0127 (5) | 0.0251 (6) | 0.0217 (6) | 0.0022 (4) | 0.0031 (4) | 0.0000 (5) |
C10 | 0.0185 (6) | 0.0273 (7) | 0.0248 (6) | 0.0043 (5) | 0.0046 (5) | −0.0015 (5) |
Cl1—C4 | 1.7476 (13) | C2—H2 | 0.9500 |
S1—C8 | 1.7011 (12) | C3—C4 | 1.3889 (19) |
O1—C1 | 1.3539 (14) | C3—H3 | 0.9500 |
O1—H1O | 0.835 (9) | C4—C5 | 1.3782 (18) |
N1—C7 | 1.2870 (15) | C5—C6 | 1.4020 (16) |
N1—N2 | 1.3842 (13) | C5—H5 | 0.9500 |
N2—C8 | 1.3541 (14) | C6—C7 | 1.4552 (16) |
N2—H2N | 0.870 (9) | C7—H7 | 0.9500 |
N3—C8 | 1.3234 (15) | C9—C10 | 1.5169 (18) |
N3—C9 | 1.4615 (14) | C9—H9A | 0.9900 |
N3—H3N | 0.860 (9) | C9—H9B | 0.9900 |
C1—C2 | 1.3959 (17) | C10—H10A | 0.9800 |
C1—C6 | 1.4078 (17) | C10—H10B | 0.9800 |
C2—C3 | 1.3837 (17) | C10—H10C | 0.9800 |
C1—O1—H1O | 107.2 (15) | C6—C5—H5 | 120.1 |
C7—N1—N2 | 114.46 (10) | C5—C6—C1 | 119.07 (11) |
C8—N2—N1 | 120.45 (10) | C5—C6—C7 | 118.05 (11) |
C8—N2—H2N | 119.1 (10) | C1—C6—C7 | 122.65 (11) |
N1—N2—H2N | 116.3 (10) | N1—C7—C6 | 121.50 (11) |
C8—N3—C9 | 123.58 (10) | N1—C7—H7 | 119.2 |
C8—N3—H3N | 117.1 (11) | C6—C7—H7 | 119.2 |
C9—N3—H3N | 117.0 (11) | N3—C8—N2 | 117.72 (10) |
O1—C1—C2 | 117.70 (11) | N3—C8—S1 | 124.30 (9) |
O1—C1—C6 | 122.36 (11) | N2—C8—S1 | 117.97 (9) |
C2—C1—C6 | 119.92 (11) | N3—C9—C10 | 111.51 (10) |
C3—C2—C1 | 120.44 (12) | N3—C9—H9A | 109.3 |
C3—C2—H2 | 119.8 | C10—C9—H9A | 109.3 |
C1—C2—H2 | 119.8 | N3—C9—H9B | 109.3 |
C2—C3—C4 | 119.33 (12) | C10—C9—H9B | 109.3 |
C2—C3—H3 | 120.3 | H9A—C9—H9B | 108.0 |
C4—C3—H3 | 120.3 | C9—C10—H10A | 109.5 |
C5—C4—C3 | 121.41 (12) | C9—C10—H10B | 109.5 |
C5—C4—Cl1 | 119.13 (10) | H10A—C10—H10B | 109.5 |
C3—C4—Cl1 | 119.40 (10) | C9—C10—H10C | 109.5 |
C4—C5—C6 | 119.81 (12) | H10A—C10—H10C | 109.5 |
C4—C5—H5 | 120.1 | H10B—C10—H10C | 109.5 |
C7—N1—N2—C8 | −171.98 (11) | C2—C1—C6—C5 | 0.09 (17) |
O1—C1—C2—C3 | 177.38 (11) | O1—C1—C6—C7 | −4.18 (17) |
C6—C1—C2—C3 | −1.19 (18) | C2—C1—C6—C7 | 174.32 (12) |
C1—C2—C3—C4 | 0.97 (19) | N2—N1—C7—C6 | −172.18 (10) |
C2—C3—C4—C5 | 0.4 (2) | C5—C6—C7—N1 | −177.90 (11) |
C2—C3—C4—Cl1 | −176.77 (10) | C1—C6—C7—N1 | 7.82 (18) |
C3—C4—C5—C6 | −1.5 (2) | C9—N3—C8—N2 | 175.63 (11) |
Cl1—C4—C5—C6 | 175.68 (10) | C9—N3—C8—S1 | −3.54 (17) |
C4—C5—C6—C1 | 1.21 (18) | N1—N2—C8—N3 | 13.77 (17) |
C4—C5—C6—C7 | −173.28 (12) | N1—N2—C8—S1 | −167.01 (8) |
O1—C1—C6—C5 | −178.40 (11) | C8—N3—C9—C10 | −85.80 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1o···N1 | 0.84 (1) | 1.92 (1) | 2.670 (2) | 149 (2) |
N2—H2n···S1i | 0.87 (1) | 2.48 (1) | 3.308 (1) | 159 (1) |
Symmetry code: (i) −x+3/2, −y+3/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C10H12ClN3OS |
Mr | 257.74 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 100 |
a, b, c (Å) | 21.7956 (3), 11.8536 (2), 9.4155 (1) |
β (°) | 101.6870 (9) |
V (Å3) | 2382.12 (6) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.48 |
Crystal size (mm) | 0.40 × 0.40 × 0.40 |
Data collection | |
Diffractometer | Bruker SMART APEX diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.832, 0.832 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11204, 2985, 2582 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.669 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.029, 0.085, 1.02 |
No. of reflections | 2985 |
No. of parameters | 157 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.33, −0.28 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1o···N1 | 0.84 (1) | 1.92 (1) | 2.670 (2) | 149 (2) |
N2—H2n···S1i | 0.87 (1) | 2.48 (1) | 3.308 (1) | 159 (1) |
Symmetry code: (i) −x+3/2, −y+3/2, −z. |
Acknowledgements
We thank the University of Malaya (gant No. RG020/09AFR) for supporting this study.
References
Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191. CrossRef CAS Google Scholar
Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Vrdoljak, V., Cindrić, M., Milić, D., Matković-Čalogović, D., Novak, P. & Kamenar, B. (2005). Polyhedron, 24, 1717–1726. Web of Science CSD CrossRef CAS Google Scholar
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Salicylaldehyde condenses with a large number of 4-alkyl/aryl-3-thiosemicarbazide to yield the corresponding thiosemicarbazone Schiff-bases. These compounds are used as chelating ligands to a range of metal ions. The semicarbazones, as exemplified by the salicylaldehyde 4-methyl-3-thiosemicarbazone homolog (Vrdoljak et al., 2005), feature an N–H···S hydrogen bond that connects two molecules into a hydrogen-bonded dimer. In C10H12ClN3OS, the –C═N–N–C– chain separating the double-bond S atom and the benzene ring adopts an extended zigzag conformation (Fig.1). The amino H atom of the chain is hydrogen-bond donor to the S atom of an inversion-related molecule to form a dimer. The H atom of the hydroxy unit is hydrogen bond donor to the azomethine N atom. The other amino H atom is only weakly involved in hydrogen bonding (Table 1).