metal-organic compounds
Aqua(di-2-pyridylamine-κ2N2,N2′)(pyridine-2,6-dicarboxylato-κ3O2,N,O6)zinc monohydrate
aDepartment of Elementary Education, Elementary Science Education, Faculty of Education, Kırıkkale University, 71450 Yahşihan/Kırıkkale, Turkey, and bDepartment of Physics, Faculty of Arts and Sciences, Ondokuz Mayıs University, 55139 Samsun, Turkey
*Correspondence e-mail: durankayafigen@gmail.com
In the title compound, [Zn(C7H3NO4)(C10H9N3)(H2O)]·H2O, the ZnII atom has a distorted octahedral coordination geometry. One of the water molecules is coordinated with the ZnII ion and this molecule forms an O—H⋯O interaction with the lattice water molecule. The pyridine-2,6-dicarboxylate ligand is almost planar (r.m.s. deviation = 0.0242 Å). In the crystal, C—H⋯O, C—H⋯N, O—H⋯O and N—H⋯O hydrogen bonds are present.
Related literature
For the biological activity of 2,6-pyridinedicarboxylic acid, see: Chung et al. (1971); Tang et al. (1968). For the crystal structures of pyridine-2,6-dicarboxylate derivatives, see: Uçar et al. (2007a,b); Uçar et al. (2009); Cui et al. (2011). For C—H⋯O interactions, see: Desiraju & Steiner (1999).
Experimental
Crystal data
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2002); cell X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811015571/zj2009sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811015571/zj2009Isup2.hkl
To ethanol/water (30ml, ca. 1:1, v/v) containing ZnCl2.4H2O (1mmol) and disodium dipicolinate (1mmol), 2,2-dipyridylamine (1mmol) was added slowly with continuous stirring. The resulting solutions were refluxed for 1h and then filtered. The blue filtrates were allowed about 2 weeks at room temperature, and then the colorless crystals of title complex suitable for X-ray diffraction analyses were collected.
H6A and H6B atoms were located in a difference map and were refined with O–H and H···H distance restrains 0.80 (2) Å and 1.60 (2) Å, respectively. Other H atoms were located in a difference map and refined freely.
Data collection: X-AREA (Stoe & Cie, 2002); cell
X-AREA (Stoe & Cie, 2002); data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).Fig. 1. The asymmetric unit of the title compound, showing the atomic numbering scheme. Displacement ellipsoid are drawn at the 50% probability level. | |
Fig. 2. The crystal packing of the title compound in the unit cell. The hydrogen bonds were shown dashed lines. |
[Zn(C7H3NO4)(C10H9N3)(H2O)]·H2O | Z = 2 |
Mr = 437.71 | F(000) = 448 |
Triclinic, P1 | Dx = 1.672 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.8349 (5) Å | Cell parameters from 18443 reflections |
b = 11.1246 (8) Å | θ = 2.4–27.4° |
c = 12.1910 (9) Å | µ = 1.46 mm−1 |
α = 96.109 (6)° | T = 296 K |
β = 96.404 (6)° | Prism, colorless |
γ = 107.381 (6)° | 0.44 × 0.27 × 0.13 mm |
V = 869.51 (11) Å3 |
Stoe IPDS 2 diffractometer | 3398 independent reflections |
Radiation source: fine-focus sealed tube | 3093 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.019 |
w–scan rotation | θmax = 26.0°, θmin = 2.4° |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | h = −8→8 |
Tmin = 0.598, Tmax = 0.833 | k = −13→13 |
7786 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.028 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.071 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0354P)2 + 0.4854P] where P = (Fo2 + 2Fc2)/3 |
3398 reflections | (Δ/σ)max = 0.001 |
315 parameters | Δρmax = 0.36 e Å−3 |
3 restraints | Δρmin = −0.51 e Å−3 |
[Zn(C7H3NO4)(C10H9N3)(H2O)]·H2O | γ = 107.381 (6)° |
Mr = 437.71 | V = 869.51 (11) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.8349 (5) Å | Mo Kα radiation |
b = 11.1246 (8) Å | µ = 1.46 mm−1 |
c = 12.1910 (9) Å | T = 296 K |
α = 96.109 (6)° | 0.44 × 0.27 × 0.13 mm |
β = 96.404 (6)° |
Stoe IPDS 2 diffractometer | 3398 independent reflections |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | 3093 reflections with I > 2σ(I) |
Tmin = 0.598, Tmax = 0.833 | Rint = 0.019 |
7786 measured reflections |
R[F2 > 2σ(F2)] = 0.028 | 3 restraints |
wR(F2) = 0.071 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.36 e Å−3 |
3398 reflections | Δρmin = −0.51 e Å−3 |
315 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.8321 (4) | 0.6257 (2) | 0.2034 (2) | 0.0405 (5) | |
C2 | 0.9281 (4) | 0.7536 (2) | 0.2147 (2) | 0.0457 (5) | |
C3 | 1.0007 (4) | 0.8203 (2) | 0.3211 (2) | 0.0448 (5) | |
C4 | 0.9665 (3) | 0.7576 (2) | 0.4108 (2) | 0.0384 (5) | |
C5 | 0.8625 (3) | 0.62585 (18) | 0.39379 (17) | 0.0305 (4) | |
C6 | 0.7053 (3) | 0.45086 (19) | 0.50443 (17) | 0.0301 (4) | |
C7 | 0.6890 (3) | 0.4313 (2) | 0.61532 (19) | 0.0371 (5) | |
C8 | 0.5781 (4) | 0.3143 (2) | 0.6365 (2) | 0.0428 (5) | |
C9 | 0.4779 (4) | 0.2187 (2) | 0.5475 (2) | 0.0457 (5) | |
C10 | 0.4947 (4) | 0.2455 (2) | 0.4423 (2) | 0.0421 (5) | |
C11 | 0.8865 (3) | 0.1646 (2) | 0.28574 (18) | 0.0373 (5) | |
C12 | 0.6742 (3) | 0.10009 (19) | 0.21539 (17) | 0.0318 (4) | |
C13 | 0.5899 (4) | −0.0290 (2) | 0.1784 (2) | 0.0404 (5) | |
C14 | 0.3928 (4) | −0.0736 (2) | 0.1172 (2) | 0.0451 (6) | |
C15 | 0.2853 (3) | 0.0102 (2) | 0.0934 (2) | 0.0400 (5) | |
C16 | 0.3784 (3) | 0.13814 (19) | 0.13253 (16) | 0.0315 (4) | |
C17 | 0.2853 (3) | 0.2443 (2) | 0.11450 (17) | 0.0353 (4) | |
N1 | 0.6108 (3) | 0.35941 (16) | 0.41824 (15) | 0.0340 (4) | |
N2 | 0.8254 (3) | 0.56958 (17) | 0.48748 (16) | 0.0328 (4) | |
N3 | 0.8026 (3) | 0.55946 (16) | 0.29092 (14) | 0.0319 (4) | |
N4 | 0.5679 (3) | 0.17928 (15) | 0.19219 (14) | 0.0301 (3) | |
O1 | 0.4027 (2) | 0.35555 (15) | 0.15426 (14) | 0.0452 (4) | |
O2 | 0.1071 (2) | 0.21538 (16) | 0.06327 (14) | 0.0456 (4) | |
O3 | 0.9333 (2) | 0.28411 (14) | 0.31253 (12) | 0.0360 (3) | |
O4 | 0.9925 (3) | 0.09778 (17) | 0.31240 (19) | 0.0629 (6) | |
O5 | 0.8755 (3) | 0.38070 (19) | 0.10477 (16) | 0.0480 (4) | |
O6 | 0.7196 (4) | 0.4353 (2) | −0.0951 (2) | 0.0736 (6) | |
Zn1 | 0.69556 (4) | 0.36631 (2) | 0.25541 (2) | 0.03462 (9) | |
H6A | 0.598 (3) | 0.411 (2) | −0.062 (2) | 0.052* | |
H6B | 0.727 (4) | 0.5068 (19) | −0.118 (2) | 0.052* | |
H1 | 0.788 (4) | 0.577 (3) | 0.131 (2) | 0.046 (7)* | |
H2 | 0.937 (4) | 0.790 (3) | 0.149 (2) | 0.054 (8)* | |
H3 | 1.064 (4) | 0.901 (3) | 0.331 (2) | 0.051 (8)* | |
H4 | 1.005 (4) | 0.797 (2) | 0.483 (2) | 0.039 (6)* | |
H5 | 0.881 (4) | 0.612 (2) | 0.540 (2) | 0.032 (6)* | |
H5A | 0.941 (5) | 0.329 (3) | 0.094 (3) | 0.060 (9)* | |
H5B | 0.818 (6) | 0.384 (3) | 0.043 (3) | 0.077 (11)* | |
H7 | 0.754 (4) | 0.499 (3) | 0.672 (2) | 0.045 (7)* | |
H8 | 0.567 (4) | 0.299 (3) | 0.709 (2) | 0.046 (7)* | |
H9 | 0.391 (5) | 0.139 (3) | 0.558 (2) | 0.059 (8)* | |
H10 | 0.427 (4) | 0.185 (3) | 0.380 (2) | 0.047 (7)* | |
H13 | 0.661 (4) | −0.083 (3) | 0.195 (2) | 0.052 (8)* | |
H14 | 0.336 (4) | −0.159 (3) | 0.092 (2) | 0.053 (8)* | |
H15 | 0.160 (5) | −0.016 (3) | 0.055 (2) | 0.058 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0449 (12) | 0.0410 (12) | 0.0389 (12) | 0.0179 (10) | 0.0067 (9) | 0.0071 (10) |
C2 | 0.0487 (13) | 0.0418 (13) | 0.0538 (14) | 0.0191 (11) | 0.0142 (11) | 0.0175 (11) |
C3 | 0.0397 (12) | 0.0277 (11) | 0.0670 (16) | 0.0088 (9) | 0.0094 (11) | 0.0105 (11) |
C4 | 0.0347 (11) | 0.0291 (10) | 0.0480 (13) | 0.0097 (8) | −0.0003 (9) | −0.0016 (9) |
C5 | 0.0232 (9) | 0.0277 (10) | 0.0405 (11) | 0.0108 (7) | −0.0005 (8) | 0.0015 (8) |
C6 | 0.0235 (9) | 0.0304 (10) | 0.0367 (10) | 0.0116 (8) | −0.0002 (8) | 0.0020 (8) |
C7 | 0.0329 (10) | 0.0413 (12) | 0.0373 (11) | 0.0142 (9) | 0.0016 (9) | 0.0032 (9) |
C8 | 0.0398 (12) | 0.0497 (14) | 0.0442 (13) | 0.0184 (10) | 0.0102 (10) | 0.0136 (11) |
C9 | 0.0403 (12) | 0.0372 (12) | 0.0614 (15) | 0.0101 (10) | 0.0162 (11) | 0.0119 (11) |
C10 | 0.0381 (12) | 0.0329 (11) | 0.0493 (13) | 0.0046 (9) | 0.0074 (10) | −0.0011 (10) |
C11 | 0.0351 (11) | 0.0342 (11) | 0.0404 (11) | 0.0128 (9) | −0.0054 (9) | 0.0014 (9) |
C12 | 0.0320 (10) | 0.0295 (10) | 0.0327 (10) | 0.0106 (8) | 0.0003 (8) | 0.0011 (8) |
C13 | 0.0405 (12) | 0.0298 (11) | 0.0490 (13) | 0.0121 (9) | 0.0000 (10) | 0.0024 (9) |
C14 | 0.0428 (12) | 0.0269 (11) | 0.0560 (14) | 0.0028 (9) | 0.0006 (11) | −0.0049 (10) |
C15 | 0.0304 (11) | 0.0361 (11) | 0.0440 (12) | 0.0029 (9) | −0.0040 (9) | −0.0027 (9) |
C16 | 0.0277 (9) | 0.0326 (10) | 0.0299 (10) | 0.0064 (8) | −0.0008 (8) | 0.0002 (8) |
C17 | 0.0310 (10) | 0.0376 (11) | 0.0344 (10) | 0.0106 (9) | −0.0033 (8) | 0.0009 (9) |
N1 | 0.0306 (8) | 0.0285 (8) | 0.0397 (9) | 0.0070 (7) | 0.0025 (7) | 0.0006 (7) |
N2 | 0.0327 (9) | 0.0276 (9) | 0.0322 (9) | 0.0067 (7) | −0.0051 (7) | −0.0022 (7) |
N3 | 0.0318 (8) | 0.0286 (8) | 0.0350 (9) | 0.0106 (7) | 0.0016 (7) | 0.0031 (7) |
N4 | 0.0294 (8) | 0.0277 (8) | 0.0300 (8) | 0.0078 (7) | −0.0021 (6) | −0.0001 (7) |
O1 | 0.0388 (8) | 0.0328 (8) | 0.0579 (10) | 0.0125 (7) | −0.0144 (7) | −0.0006 (7) |
O2 | 0.0343 (8) | 0.0477 (9) | 0.0491 (9) | 0.0145 (7) | −0.0125 (7) | −0.0026 (7) |
O3 | 0.0324 (7) | 0.0308 (7) | 0.0396 (8) | 0.0092 (6) | −0.0078 (6) | −0.0010 (6) |
O4 | 0.0539 (11) | 0.0424 (10) | 0.0875 (14) | 0.0246 (8) | −0.0250 (10) | −0.0019 (9) |
O5 | 0.0541 (10) | 0.0532 (11) | 0.0450 (10) | 0.0274 (9) | 0.0081 (8) | 0.0114 (8) |
O6 | 0.0919 (17) | 0.0610 (13) | 0.0670 (14) | 0.0290 (12) | −0.0116 (12) | 0.0154 (11) |
Zn1 | 0.03612 (14) | 0.02497 (13) | 0.03752 (15) | 0.00839 (9) | −0.00719 (10) | −0.00130 (9) |
C1—N3 | 1.360 (3) | C11—C12 | 1.525 (3) |
C1—C2 | 1.362 (3) | C12—N4 | 1.332 (3) |
C1—H1 | 0.95 (3) | C12—C13 | 1.381 (3) |
C2—C3 | 1.382 (4) | C13—C14 | 1.384 (3) |
C2—H2 | 0.94 (3) | C13—H13 | 0.90 (3) |
C3—C4 | 1.363 (4) | C14—C15 | 1.383 (3) |
C3—H3 | 0.86 (3) | C14—H14 | 0.91 (3) |
C4—C5 | 1.406 (3) | C15—C16 | 1.380 (3) |
C4—H4 | 0.92 (3) | C15—H15 | 0.88 (3) |
C5—N3 | 1.339 (3) | C16—N4 | 1.334 (2) |
C5—N2 | 1.372 (3) | C16—C17 | 1.523 (3) |
C6—N1 | 1.336 (3) | C17—O2 | 1.237 (2) |
C6—N2 | 1.382 (3) | C17—O1 | 1.266 (3) |
C6—C7 | 1.403 (3) | N1—Zn1 | 2.1318 (18) |
C7—C8 | 1.364 (3) | N2—H5 | 0.75 (3) |
C7—H7 | 0.93 (3) | N3—Zn1 | 2.0327 (17) |
C8—C9 | 1.389 (4) | N4—Zn1 | 2.0269 (16) |
C8—H8 | 0.93 (3) | O1—Zn1 | 2.1947 (15) |
C9—C10 | 1.357 (4) | O3—Zn1 | 2.1755 (14) |
C9—H9 | 0.94 (3) | O5—Zn1 | 2.3148 (19) |
C10—N1 | 1.361 (3) | O5—H5A | 0.83 (4) |
C10—H10 | 0.93 (3) | O5—H5B | 0.82 (4) |
C11—O4 | 1.226 (3) | O6—H6A | 0.944 (16) |
C11—O3 | 1.268 (3) | O6—H6B | 0.860 (17) |
N3—C1—C2 | 123.8 (2) | C16—C15—C14 | 118.5 (2) |
N3—C1—H1 | 116.2 (16) | C16—C15—H15 | 120 (2) |
C2—C1—H1 | 119.9 (16) | C14—C15—H15 | 121.7 (19) |
C1—C2—C3 | 118.3 (2) | N4—C16—C15 | 120.37 (19) |
C1—C2—H2 | 116.5 (18) | N4—C16—C17 | 113.52 (17) |
C3—C2—H2 | 125.2 (18) | C15—C16—C17 | 126.11 (18) |
C4—C3—C2 | 119.4 (2) | O2—C17—O1 | 126.4 (2) |
C4—C3—H3 | 120.3 (19) | O2—C17—C16 | 118.48 (19) |
C2—C3—H3 | 120.4 (19) | O1—C17—C16 | 115.11 (17) |
C3—C4—C5 | 119.7 (2) | C6—N1—C10 | 117.04 (19) |
C3—C4—H4 | 123.9 (16) | C6—N1—Zn1 | 122.80 (14) |
C5—C4—H4 | 116.5 (16) | C10—N1—Zn1 | 118.08 (15) |
N3—C5—N2 | 122.07 (18) | C5—N2—C6 | 133.38 (18) |
N3—C5—C4 | 121.2 (2) | C5—N2—H5 | 113.4 (19) |
N2—C5—C4 | 116.70 (19) | C6—N2—H5 | 113.2 (19) |
N1—C6—N2 | 120.82 (19) | C5—N3—C1 | 117.46 (18) |
N1—C6—C7 | 122.11 (19) | C5—N3—Zn1 | 125.03 (14) |
N2—C6—C7 | 117.06 (18) | C1—N3—Zn1 | 117.26 (15) |
C8—C7—C6 | 119.2 (2) | C12—N4—C16 | 121.92 (17) |
C8—C7—H7 | 122.3 (16) | C12—N4—Zn1 | 118.39 (13) |
C6—C7—H7 | 118.4 (16) | C16—N4—Zn1 | 119.64 (14) |
C7—C8—C9 | 119.1 (2) | C17—O1—Zn1 | 115.49 (13) |
C7—C8—H8 | 120.6 (17) | C11—O3—Zn1 | 115.28 (12) |
C9—C8—H8 | 120.2 (17) | Zn1—O5—H5A | 117 (2) |
C10—C9—C8 | 118.5 (2) | Zn1—O5—H5B | 120 (3) |
C10—C9—H9 | 119.6 (18) | H5A—O5—H5B | 106 (3) |
C8—C9—H9 | 121.8 (18) | H6A—O6—H6B | 107 (2) |
C9—C10—N1 | 123.9 (2) | N4—Zn1—N3 | 169.48 (7) |
C9—C10—H10 | 121.3 (17) | N4—Zn1—N1 | 98.90 (7) |
N1—C10—H10 | 114.8 (17) | N3—Zn1—N1 | 89.01 (7) |
O4—C11—O3 | 126.5 (2) | N4—Zn1—O3 | 76.80 (6) |
O4—C11—C12 | 118.25 (19) | N3—Zn1—O3 | 110.79 (6) |
O3—C11—C12 | 115.21 (18) | N1—Zn1—O3 | 86.62 (6) |
N4—C12—C13 | 120.53 (18) | N4—Zn1—O1 | 75.75 (6) |
N4—C12—C11 | 114.27 (17) | N3—Zn1—O1 | 95.92 (6) |
C13—C12—C11 | 125.19 (19) | N1—Zn1—O1 | 101.92 (7) |
C12—C13—C14 | 118.4 (2) | O3—Zn1—O1 | 152.19 (6) |
C12—C13—H13 | 120.5 (18) | N4—Zn1—O5 | 85.73 (7) |
C14—C13—H13 | 121.1 (18) | N3—Zn1—O5 | 88.44 (7) |
C15—C14—C13 | 120.2 (2) | N1—Zn1—O5 | 164.45 (7) |
C15—C14—H14 | 120.7 (18) | O3—Zn1—O5 | 79.96 (7) |
C13—C14—H14 | 119.1 (18) | O1—Zn1—O5 | 93.61 (7) |
N3—C1—C2—C3 | 0.3 (4) | C15—C16—N4—Zn1 | −176.87 (16) |
C1—C2—C3—C4 | −2.7 (4) | C17—C16—N4—Zn1 | 3.2 (2) |
C2—C3—C4—C5 | 1.4 (3) | O2—C17—O1—Zn1 | 173.65 (19) |
C3—C4—C5—N3 | 2.5 (3) | C16—C17—O1—Zn1 | −6.8 (2) |
C3—C4—C5—N2 | −177.3 (2) | O4—C11—O3—Zn1 | −176.9 (2) |
N1—C6—C7—C8 | 1.9 (3) | C12—C11—O3—Zn1 | 1.7 (2) |
N2—C6—C7—C8 | −177.71 (19) | C12—N4—Zn1—N3 | 139.2 (3) |
C6—C7—C8—C9 | −2.3 (3) | C16—N4—Zn1—N3 | −43.2 (4) |
C7—C8—C9—C10 | 0.2 (4) | C12—N4—Zn1—N1 | −82.39 (16) |
C8—C9—C10—N1 | 2.5 (4) | C16—N4—Zn1—N1 | 95.14 (16) |
O4—C11—C12—N4 | 178.7 (2) | C12—N4—Zn1—O3 | 1.98 (15) |
O3—C11—C12—N4 | 0.0 (3) | C16—N4—Zn1—O3 | 179.51 (16) |
O4—C11—C12—C13 | −0.1 (4) | C12—N4—Zn1—O1 | 177.47 (17) |
O3—C11—C12—C13 | −178.9 (2) | C16—N4—Zn1—O1 | −4.99 (15) |
N4—C12—C13—C14 | −0.2 (3) | C12—N4—Zn1—O5 | 82.65 (16) |
C11—C12—C13—C14 | 178.5 (2) | C16—N4—Zn1—O5 | −99.81 (16) |
C12—C13—C14—C15 | 0.5 (4) | C5—N3—Zn1—N4 | 162.2 (3) |
C13—C14—C15—C16 | −0.3 (4) | C1—N3—Zn1—N4 | −23.7 (5) |
C14—C15—C16—N4 | −0.2 (3) | C5—N3—Zn1—N1 | 23.17 (16) |
C14—C15—C16—C17 | 179.7 (2) | C1—N3—Zn1—N1 | −162.73 (16) |
N4—C16—C17—O2 | −177.65 (19) | C5—N3—Zn1—O3 | −62.84 (17) |
C15—C16—C17—O2 | 2.4 (3) | C1—N3—Zn1—O3 | 111.27 (16) |
N4—C16—C17—O1 | 2.7 (3) | C5—N3—Zn1—O1 | 125.05 (16) |
C15—C16—C17—O1 | −177.2 (2) | C1—N3—Zn1—O1 | −60.85 (16) |
N2—C6—N1—C10 | −179.72 (19) | C5—N3—Zn1—O5 | −141.49 (16) |
C7—C6—N1—C10 | 0.7 (3) | C1—N3—Zn1—O5 | 32.62 (16) |
N2—C6—N1—Zn1 | 17.0 (3) | C6—N1—Zn1—N4 | 160.71 (15) |
C7—C6—N1—Zn1 | −162.58 (15) | C10—N1—Zn1—N4 | −2.40 (17) |
C9—C10—N1—C6 | −3.0 (3) | C6—N1—Zn1—N3 | −26.25 (16) |
C9—C10—N1—Zn1 | 161.11 (19) | C10—N1—Zn1—N3 | 170.64 (17) |
N3—C5—N2—C6 | −10.9 (3) | C6—N1—Zn1—O3 | 84.64 (16) |
C4—C5—N2—C6 | 168.9 (2) | C10—N1—Zn1—O3 | −78.47 (16) |
N1—C6—N2—C5 | 6.7 (3) | C6—N1—Zn1—O1 | −122.10 (16) |
C7—C6—N2—C5 | −173.7 (2) | C10—N1—Zn1—O1 | 74.79 (17) |
N2—C5—N3—C1 | 174.93 (19) | C6—N1—Zn1—O5 | 54.4 (3) |
C4—C5—N3—C1 | −4.8 (3) | C10—N1—Zn1—O5 | −108.8 (3) |
N2—C5—N3—Zn1 | −11.0 (3) | C11—O3—Zn1—N4 | −1.98 (15) |
C4—C5—N3—Zn1 | 169.25 (15) | C11—O3—Zn1—N3 | −174.37 (15) |
C2—C1—N3—C5 | 3.6 (3) | C11—O3—Zn1—N1 | 97.98 (16) |
C2—C1—N3—Zn1 | −171.01 (19) | C11—O3—Zn1—O1 | −11.4 (2) |
C13—C12—N4—C16 | −0.4 (3) | C11—O3—Zn1—O5 | −89.92 (16) |
C11—C12—N4—C16 | −179.23 (18) | C17—O1—Zn1—N4 | 6.50 (16) |
C13—C12—N4—Zn1 | 177.11 (17) | C17—O1—Zn1—N3 | 179.98 (17) |
C11—C12—N4—Zn1 | −1.8 (2) | C17—O1—Zn1—N1 | −89.78 (17) |
C15—C16—N4—C12 | 0.6 (3) | C17—O1—Zn1—O3 | 15.9 (3) |
C17—C16—N4—C12 | −179.36 (18) | C17—O1—Zn1—O5 | 91.17 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10···N4 | 0.93 (3) | 2.59 (3) | 3.189 (3) | 123 (2) |
O5—H5B···O6 | 0.82 (4) | 1.95 (4) | 2.750 (3) | 166 (4) |
N2—H5···O3i | 0.75 (3) | 2.08 (3) | 2.823 (2) | 172 (3) |
O6—H6B···O1ii | 0.86 (2) | 2.05 (2) | 2.832 (3) | 151 (2) |
O5—H5A···O2iii | 0.83 (4) | 1.97 (4) | 2.804 (3) | 176 (3) |
C2—H2···O2ii | 0.94 (3) | 2.56 (3) | 3.432 (3) | 155 (2) |
C3—H3···O4iv | 0.86 (3) | 2.41 (3) | 3.117 (3) | 140 (2) |
C15—H15···O2v | 0.88 (3) | 2.57 (3) | 3.309 (3) | 142 (2) |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x+1, −y+1, −z; (iii) x+1, y, z; (iv) x, y+1, z; (v) −x, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C7H3NO4)(C10H9N3)(H2O)]·H2O |
Mr | 437.71 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 6.8349 (5), 11.1246 (8), 12.1910 (9) |
α, β, γ (°) | 96.109 (6), 96.404 (6), 107.381 (6) |
V (Å3) | 869.51 (11) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.46 |
Crystal size (mm) | 0.44 × 0.27 × 0.13 |
Data collection | |
Diffractometer | Stoe IPDS 2 diffractometer |
Absorption correction | Integration (X-RED32; Stoe & Cie, 2002) |
Tmin, Tmax | 0.598, 0.833 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7786, 3398, 3093 |
Rint | 0.019 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.028, 0.071, 1.05 |
No. of reflections | 3398 |
No. of parameters | 315 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.36, −0.51 |
Computer programs: X-AREA (Stoe & Cie, 2002), X-RED32 (Stoe & Cie, 2002), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10···N4 | 0.93 (3) | 2.59 (3) | 3.189 (3) | 123 (2) |
O5—H5B···O6 | 0.82 (4) | 1.95 (4) | 2.750 (3) | 166 (4) |
N2—H5···O3i | 0.75 (3) | 2.08 (3) | 2.823 (2) | 172 (3) |
O6—H6B···O1ii | 0.860 (17) | 2.05 (2) | 2.832 (3) | 151 (2) |
O5—H5A···O2iii | 0.83 (4) | 1.97 (4) | 2.804 (3) | 176 (3) |
C2—H2···O2ii | 0.94 (3) | 2.56 (3) | 3.432 (3) | 155 (2) |
C3—H3···O4iv | 0.86 (3) | 2.41 (3) | 3.117 (3) | 140 (2) |
C15—H15···O2v | 0.88 (3) | 2.57 (3) | 3.309 (3) | 142 (2) |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x+1, −y+1, −z; (iii) x+1, y, z; (iv) x, y+1, z; (v) −x, −y, −z. |
Acknowledgements
The authors thank the Ondokuz Mayis University Research Fund for financial support.
References
Chung, L., Rajan, K. S., Merdinger, E. & Grecz, N. (1971). Biophys. J. 11, 470–482. CrossRef Google Scholar
Cui, G.-H., Liu, T.-F. & Peng, X. (2011). J. Chem. Crystallogr. 41, 322–327. CrossRef CAS Google Scholar
Desiraju, G. R. & Steiner, T. (1999). The Weak Hydrogen Bond in Structural Chemistry and Biology. New York: Oxford University Press. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Stoe & Cie (2002). X-AREA and X-RED32. Stoe & Cie, Darmstadt, Germany. Google Scholar
Tang, T., Rajan, K. S. & Grecz, N. (1968). Biophys. J. 8, 1458–1474. CrossRef CAS PubMed Web of Science Google Scholar
Uçar, İ., Bulut, İ., Bulut, A. & Karadağ, A. (2009). Struct. Chem. 20, 825–838. Google Scholar
Uçar, İ., Bulut, A. & Büyükgüngör, O. (2007a). J. Phys. Chem. Solids, 68, 2271–2277. Google Scholar
Uçar, İ., Karabulut, B., Bulut, A. & Büyükgüngör, O. (2007b). J. Mol. Struct. 834–836, 336–344. Google Scholar
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The large amount of the 2,6-pyridinedicarboxylic acid (dipicolinic acid, DPA) is contain by bacterial spores and may be related to heat resistance of bacterial spores (Chung et al., 1971; Tang et al., 1968).
In the Figure 1 is shown that the pyridine-2,6-dicarboxylato ligand has connected to ZnII ion through the carboxyl group and ring nitrogen. The metal atom has also connected to 2,2-dipyridylamine ligand thought two ring nitrogens. Thus, the Zn(II) atom has a distorted octahedral coordination geometry by two N atoms from the dipyridylamine ligand, one N atom and two O atoms from the pyridine-2,6-dicarboxylato ligand and one O atom from aqua ligand.
The a lot of crystal structures with pyridine-2,6-dicarboxylato ligand were reported in literature ( Uçar et al., 2007a; Uçar et al., 2007b; Uçar et al., 2009; Cui et al., 2011) and our crystal structre is very similar with the crystal structure reported by Uçar et al., (2007a). The Zn1—N1, Zn1—N3 and Zn1—N4 bond distances are 2.1318 (18) Å, 2.0327 (17) Å and 2.0269 (16) Å, respectively, while the Zn1—O1, Zn1—O3 and Zn1—O5 bond distances are 2.1947 (15) Å, 2.1755 (14) Å and 2.3148 (19) Å, respectively. In the crystal structure, the O3—C11—O4 and O1—C17—O2 bond angle for carboxylate groups are 126.5 (2)° and 126.4 (2)°, respectively. The some geometrical parameter were found as N1—Zn1—N3=89.01 (7)°, O3—Zn1—O1=152.19 (6)°, O1—Zn1—N4=75.75 (6)° and O3—Zn1—N4=76.80 (6)°.
The crystal structure contains intra and inter hydrogen bonds. The d parameter for C—H···O hydrogen bonds had separated a wide range and had different shapes for different donor atoms (Desiraju & Steiner, 1999). The d parameters of our crystal structure for H2···O2, H3···O4 and H15···O2 are 2.56 (3) Å, 2.41 (3) Å and 2.57 (3) Å, respectively. The D parameters for C—H···N interactions had given somewhat longer than C—H···O interactions (Desiraju & Steiner, 1999). The geometric parameters for C10—H10···N4 and C15—H15···O2 interactions are 0.93 (3) Å, 2.59 (3) Å, 3.189 (3) Å, 123 (2)° and 0.88 (3) Å, 2.57 (3) Å, 3.309 (3) Å, 142 (2)°, respectively. The d parameters for these interactions are 2.59 (3) Å and 2.57 (3) Å as well as d value for C10—H10···N4 is longer than d value for C15—H15···O2, but the D value is bigger for this interaction, due to the angle belong to C15—H15···O2 interaction is bigger than other interaction. The O5—H5B···O6 hydrogen bond is between the water molecules and the geometric parameters belong to this hydrogen bond are 0.82 (4) Å, 1.95 (4) Å, 2.750 (3) Å and 166 (4)°, respectively. The other hydrogen bonds have been given in Table 1.