metal-organic compounds
Propane-1,2-diaminium bis(pyridine-2,6-dicarboxylato-κ3O2,N,O6)cadmate dihydrate
aFaculty of Chemistry, Tarbiat Moallem University, 15614, Tehran, Iran, and bDepartment of Chemistry, Shahid Beheshti University, G. C., Evin, Tehran, 1983963113, Iran
*Correspondence e-mail: agah2006@yahoo.com
The reaction of cadmium nitrate dihydrate, propane-1,2-diamine and pyridine-2,6-dicarboxylic acid in a 1:1:2 molar ratio in an aqueous solution resulted in the formation of the title compound, (C3H12N2)[Cd(C7H3NO4)2]·2H2O or (p-1,2-daH2)-[Cd(pydc)2]·2H2O (where p-1,2-da is propane-1,2-diamine and pydcH2 is pyridine-2,6-dicarboxylic acid). The CdII ion is coordinated by four O and two N atoms of two pydc ligands in a distorted octahedral environment. The structure also contains two uncoordinated water molecules. In the crystal, there are several intermolecular N—H⋯O, O—H⋯O and weak C—H⋯O hydrogen bonds. There are also π–π stacking interactions between the pyridine rings of pydc units, with centroid–centroid distances of 3.4708 (16) Å.
Related literature
For related proton-transfer compounds reported by our group, see: Aghabozorg et al. (2008a,b,c,d); Pasdar et al. (2011).
Experimental
Crystal data
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2005); cell X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S160053681102438X/bt5545sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681102438X/bt5545Isup2.hkl
An aqueous solution (30 ml) of propane-1,2-diamine(1 mmol), pyridine-2,6-dicarboxylic acid (2 mmol) and cadmium(II) nitrate dihydrate(1 mmol) were stirred at room temperature. Colorless crystals of the title compound were obtained after three weeks at room temperature.
H atoms attached to O and N were found in a difference Fourier map and refined isotropically. H3C were refined with distance restraints of N—H 0.92 (2). Other H atoms were positioned geometrically and refined as riding atoms with C—H = 0.93–0.98 Å, Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for the others.
Data collection: X-AREA (Stoe & Cie, 2005); cell
X-AREA (Stoe & Cie, 2005); data reduction: X-AREA (Stoe & Cie, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. The molecular structure of the title compound with displacement ellipsoids drawn at 30% probability level. | |
Fig. 2. The packing diagram of the title compound viewed down the a-axis. The intermolecular N—H···O, O—H···O and weak C—H···O hydrogen bonds are shown as blue dashed lines. | |
Fig. 3. The packing diagram of the title compound showing π-π interactions between pydc fragments.Only anionic parts are shown for clarity. |
(C3H12N2)[Cd(C7H3NO4)2]·2H2O | Z = 2 |
Mr = 554.80 | F(000) = 560 |
Triclinic, P1 | Dx = 1.776 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.6227 (17) Å | Cell parameters from 5554 reflections |
b = 10.133 (2) Å | θ = 2.2–29.2° |
c = 13.448 (3) Å | µ = 1.12 mm−1 |
α = 81.36 (3)° | T = 298 K |
β = 76.73 (3)° | Plate, colorless |
γ = 65.38 (3)° | 0.3 × 0.2 × 0.15 mm |
V = 1037.7 (5) Å3 |
Stoe IPDS 2T diffractometer | 5554 independent reflections |
Radiation source: fine-focus sealed tube | 4562 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
Detector resolution: 0.15 mm pixels mm-1 | θmax = 29.2°, θmin = 2.2° |
rotation method scans | h = −10→11 |
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) | k = −13→13 |
Tmin = 0.764, Tmax = 0.842 | l = −18→18 |
11690 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.063 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.030P)2 + 0.1592P] where P = (Fo2 + 2Fc2)/3 |
5554 reflections | (Δ/σ)max = 0.002 |
330 parameters | Δρmax = 0.50 e Å−3 |
1 restraint | Δρmin = −0.37 e Å−3 |
(C3H12N2)[Cd(C7H3NO4)2]·2H2O | γ = 65.38 (3)° |
Mr = 554.80 | V = 1037.7 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.6227 (17) Å | Mo Kα radiation |
b = 10.133 (2) Å | µ = 1.12 mm−1 |
c = 13.448 (3) Å | T = 298 K |
α = 81.36 (3)° | 0.3 × 0.2 × 0.15 mm |
β = 76.73 (3)° |
Stoe IPDS 2T diffractometer | 5554 independent reflections |
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) | 4562 reflections with I > 2σ(I) |
Tmin = 0.764, Tmax = 0.842 | Rint = 0.035 |
11690 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 1 restraint |
wR(F2) = 0.063 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.50 e Å−3 |
5554 reflections | Δρmin = −0.37 e Å−3 |
330 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N3 | 1.0640 (3) | 1.0203 (2) | 0.73941 (18) | 0.0427 (4) | |
Cd1 | 0.66437 (2) | 0.504594 (16) | 0.721726 (12) | 0.03837 (6) | |
O2 | 0.2288 (2) | 0.84128 (17) | 0.89531 (14) | 0.0470 (4) | |
O1 | 0.3826 (2) | 0.68084 (17) | 0.77635 (13) | 0.0459 (4) | |
C2 | 0.5023 (3) | 0.66583 (19) | 0.92189 (15) | 0.0292 (4) | |
N1 | 0.6429 (2) | 0.55580 (16) | 0.88029 (12) | 0.0291 (3) | |
C6 | 0.7749 (3) | 0.4828 (2) | 0.92965 (15) | 0.0296 (4) | |
O5 | 0.7653 (2) | 0.69575 (17) | 0.65361 (13) | 0.0472 (4) | |
C1 | 0.3595 (3) | 0.7347 (2) | 0.85908 (16) | 0.0345 (4) | |
O3 | 0.8962 (2) | 0.31965 (15) | 0.79612 (12) | 0.0404 (3) | |
O7 | 0.6154 (2) | 0.31945 (16) | 0.67431 (12) | 0.0443 (4) | |
N2 | 0.7307 (2) | 0.50583 (17) | 0.55184 (12) | 0.0318 (3) | |
O4 | 1.0562 (2) | 0.29857 (19) | 0.91131 (16) | 0.0581 (5) | |
O6 | 0.8533 (3) | 0.80395 (19) | 0.50805 (16) | 0.0598 (5) | |
C5 | 0.7702 (3) | 0.5199 (2) | 1.02547 (16) | 0.0363 (4) | |
H5 | 0.8626 | 0.4691 | 1.0595 | 0.044* | |
C9 | 0.7864 (3) | 0.6038 (2) | 0.49661 (16) | 0.0352 (4) | |
C4 | 0.6252 (3) | 0.6340 (2) | 1.06974 (16) | 0.0385 (5) | |
H4 | 0.6193 | 0.6606 | 1.1342 | 0.046* | |
C3 | 0.4892 (3) | 0.7083 (2) | 1.01798 (16) | 0.0355 (4) | |
H3 | 0.3909 | 0.7851 | 1.0469 | 0.043* | |
C7 | 0.9229 (3) | 0.3556 (2) | 0.87480 (16) | 0.0340 (4) | |
C14 | 0.6464 (3) | 0.3028 (2) | 0.58002 (17) | 0.0382 (5) | |
C13 | 0.7083 (3) | 0.4078 (2) | 0.50696 (16) | 0.0330 (4) | |
C8 | 0.8043 (3) | 0.7107 (2) | 0.55696 (19) | 0.0408 (5) | |
O8 | 0.6343 (3) | 0.20351 (18) | 0.54186 (14) | 0.0550 (5) | |
N4 | 0.6575 (3) | 0.9894 (2) | 0.71014 (17) | 0.0395 (4) | |
C16 | 0.7838 (3) | 0.9958 (2) | 0.76668 (16) | 0.0362 (4) | |
H16 | 0.7338 | 1.0911 | 0.7957 | 0.043* | |
C12 | 0.7429 (3) | 0.4046 (3) | 0.40160 (17) | 0.0416 (5) | |
H12 | 0.7277 | 0.3358 | 0.3706 | 0.050* | |
C15 | 0.9497 (3) | 0.9831 (2) | 0.69164 (18) | 0.0410 (5) | |
H15A | 1.0104 | 0.8845 | 0.6697 | 0.049* | |
H15B | 0.9212 | 1.0482 | 0.6317 | 0.049* | |
C11 | 0.8002 (3) | 0.5050 (3) | 0.34338 (18) | 0.0505 (6) | |
H11 | 0.8236 | 0.5048 | 0.2724 | 0.061* | |
C10 | 0.8232 (3) | 0.6062 (3) | 0.39052 (18) | 0.0450 (5) | |
H10 | 0.8623 | 0.6743 | 0.3520 | 0.054* | |
C17 | 0.8098 (4) | 0.8803 (3) | 0.8543 (2) | 0.0649 (8) | |
H17A | 0.7007 | 0.8971 | 0.8997 | 0.097* | |
H17B | 0.8906 | 0.8847 | 0.8910 | 0.097* | |
H17C | 0.8545 | 0.7861 | 0.8277 | 0.097* | |
O9 | 0.3551 (3) | 0.0640 (3) | 0.8606 (2) | 0.0659 (6) | |
O10 | 0.3774 (3) | 0.9659 (3) | 0.60376 (17) | 0.0623 (5) | |
H4C | 0.553 (4) | 1.013 (3) | 0.754 (2) | 0.050 (8)* | |
H4B | 0.696 (4) | 0.906 (3) | 0.690 (2) | 0.057 (8)* | |
H4A | 0.651 (4) | 1.054 (3) | 0.655 (2) | 0.059 (8)* | |
H9A | 0.276 (6) | 0.135 (5) | 0.869 (3) | 0.090 (13)* | |
H10B | 0.404 (5) | 0.899 (4) | 0.577 (3) | 0.076 (13)* | |
H10A | 0.341 (8) | 1.039 (7) | 0.558 (5) | 0.16 (2)* | |
H9B | 0.317 (5) | −0.001 (4) | 0.883 (3) | 0.081 (12)* | |
H3C | 1.100 (4) | 0.957 (3) | 0.7943 (18) | 0.061 (9)* | |
H3A | 1.159 (4) | 1.011 (3) | 0.693 (2) | 0.057 (8)* | |
H3B | 1.013 (4) | 1.108 (4) | 0.758 (2) | 0.061 (9)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N3 | 0.0314 (10) | 0.0350 (10) | 0.0587 (13) | −0.0071 (8) | −0.0084 (10) | −0.0124 (9) |
Cd1 | 0.05293 (11) | 0.03011 (8) | 0.02906 (8) | −0.01047 (6) | −0.01066 (6) | −0.00649 (5) |
O2 | 0.0355 (9) | 0.0356 (8) | 0.0624 (11) | −0.0006 (7) | −0.0148 (8) | −0.0127 (7) |
O1 | 0.0479 (9) | 0.0413 (8) | 0.0447 (9) | −0.0050 (7) | −0.0223 (7) | −0.0084 (7) |
C2 | 0.0304 (10) | 0.0243 (8) | 0.0341 (9) | −0.0113 (7) | −0.0054 (8) | −0.0048 (7) |
N1 | 0.0313 (9) | 0.0251 (7) | 0.0312 (8) | −0.0094 (6) | −0.0077 (7) | −0.0048 (6) |
C6 | 0.0282 (10) | 0.0279 (8) | 0.0342 (9) | −0.0127 (7) | −0.0053 (8) | −0.0022 (7) |
O5 | 0.0632 (11) | 0.0349 (8) | 0.0474 (9) | −0.0195 (7) | −0.0135 (8) | −0.0092 (7) |
C1 | 0.0345 (11) | 0.0270 (9) | 0.0423 (11) | −0.0099 (8) | −0.0119 (9) | −0.0027 (8) |
O3 | 0.0421 (9) | 0.0311 (7) | 0.0386 (8) | −0.0030 (6) | −0.0073 (7) | −0.0093 (6) |
O7 | 0.0632 (11) | 0.0335 (7) | 0.0388 (8) | −0.0203 (7) | −0.0113 (8) | −0.0035 (6) |
N2 | 0.0331 (9) | 0.0270 (7) | 0.0313 (8) | −0.0056 (7) | −0.0093 (7) | −0.0040 (6) |
O4 | 0.0351 (9) | 0.0504 (10) | 0.0833 (14) | 0.0012 (8) | −0.0240 (9) | −0.0222 (9) |
O6 | 0.0699 (13) | 0.0428 (9) | 0.0738 (13) | −0.0306 (9) | −0.0176 (11) | 0.0068 (9) |
C5 | 0.0360 (11) | 0.0402 (10) | 0.0379 (11) | −0.0172 (9) | −0.0134 (9) | −0.0018 (8) |
C9 | 0.0294 (10) | 0.0316 (9) | 0.0384 (10) | −0.0051 (8) | −0.0084 (8) | −0.0022 (8) |
C4 | 0.0453 (13) | 0.0426 (11) | 0.0329 (10) | −0.0197 (10) | −0.0074 (9) | −0.0111 (8) |
C3 | 0.0352 (11) | 0.0335 (9) | 0.0371 (10) | −0.0121 (8) | −0.0028 (9) | −0.0108 (8) |
C7 | 0.0301 (10) | 0.0257 (9) | 0.0429 (11) | −0.0085 (8) | −0.0045 (9) | −0.0036 (8) |
C14 | 0.0404 (12) | 0.0270 (9) | 0.0453 (12) | −0.0053 (8) | −0.0168 (10) | −0.0070 (8) |
C13 | 0.0308 (10) | 0.0286 (9) | 0.0352 (10) | −0.0026 (8) | −0.0111 (8) | −0.0089 (7) |
C8 | 0.0362 (12) | 0.0285 (9) | 0.0538 (13) | −0.0067 (8) | −0.0123 (10) | −0.0037 (9) |
O8 | 0.0795 (13) | 0.0384 (8) | 0.0578 (10) | −0.0255 (9) | −0.0245 (10) | −0.0093 (7) |
N4 | 0.0381 (11) | 0.0341 (10) | 0.0483 (11) | −0.0121 (8) | −0.0127 (9) | −0.0080 (8) |
C16 | 0.0352 (11) | 0.0325 (10) | 0.0414 (11) | −0.0106 (8) | −0.0103 (9) | −0.0072 (8) |
C12 | 0.0379 (12) | 0.0452 (12) | 0.0369 (11) | −0.0055 (9) | −0.0115 (9) | −0.0147 (9) |
C15 | 0.0353 (12) | 0.0378 (11) | 0.0477 (12) | −0.0093 (9) | −0.0085 (10) | −0.0110 (9) |
C11 | 0.0472 (14) | 0.0666 (16) | 0.0287 (10) | −0.0145 (12) | −0.0042 (10) | −0.0058 (10) |
C10 | 0.0390 (12) | 0.0520 (13) | 0.0385 (11) | −0.0160 (10) | −0.0037 (10) | 0.0018 (10) |
C17 | 0.0664 (19) | 0.0728 (19) | 0.0647 (18) | −0.0363 (16) | −0.0286 (15) | 0.0201 (15) |
O9 | 0.0449 (11) | 0.0434 (10) | 0.0973 (17) | −0.0131 (9) | 0.0117 (11) | −0.0213 (11) |
O10 | 0.0782 (15) | 0.0666 (14) | 0.0503 (11) | −0.0389 (12) | −0.0044 (10) | −0.0085 (11) |
N3—C15 | 1.483 (3) | C9—C8 | 1.522 (3) |
N3—H3C | 0.924 (18) | C4—C3 | 1.381 (3) |
N3—H3A | 0.89 (3) | C4—H4 | 0.9300 |
N3—H3B | 0.86 (3) | C3—H3 | 0.9300 |
Cd1—N1 | 2.2185 (16) | C14—O8 | 1.246 (3) |
Cd1—N2 | 2.2236 (17) | C14—C13 | 1.517 (3) |
Cd1—O7 | 2.2906 (16) | C13—C12 | 1.382 (3) |
Cd1—O1 | 2.364 (2) | N4—C16 | 1.490 (3) |
Cd1—O3 | 2.3965 (18) | N4—H4C | 0.91 (3) |
Cd1—O5 | 2.4197 (18) | N4—H4B | 0.83 (3) |
O2—C1 | 1.252 (3) | N4—H4A | 0.91 (3) |
O1—C1 | 1.251 (3) | C16—C17 | 1.515 (3) |
C2—N1 | 1.333 (3) | C16—C15 | 1.518 (3) |
C2—C3 | 1.388 (3) | C16—H16 | 0.9800 |
C2—C1 | 1.517 (3) | C12—C11 | 1.376 (4) |
N1—C6 | 1.334 (3) | C12—H12 | 0.9300 |
C6—C5 | 1.383 (3) | C15—H15A | 0.9700 |
C6—C7 | 1.522 (3) | C15—H15B | 0.9700 |
O5—C8 | 1.268 (3) | C11—C10 | 1.384 (4) |
O3—C7 | 1.266 (3) | C11—H11 | 0.9300 |
O7—C14 | 1.257 (3) | C10—H10 | 0.9300 |
N2—C9 | 1.334 (3) | C17—H17A | 0.9600 |
N2—C13 | 1.335 (3) | C17—H17B | 0.9600 |
O4—C7 | 1.231 (3) | C17—H17C | 0.9600 |
O6—C8 | 1.234 (3) | O9—H9A | 0.76 (4) |
C5—C4 | 1.384 (3) | O9—H9B | 0.84 (4) |
C5—H5 | 0.9300 | O10—H10B | 0.74 (4) |
C9—C10 | 1.387 (3) | O10—H10A | 0.88 (6) |
C15—N3—H3C | 112.1 (19) | C4—C3—H3 | 120.7 |
C15—N3—H3A | 107.1 (19) | C2—C3—H3 | 120.7 |
H3C—N3—H3A | 107 (3) | O4—C7—O3 | 126.7 (2) |
C15—N3—H3B | 111 (2) | O4—C7—C6 | 116.74 (19) |
H3C—N3—H3B | 110 (3) | O3—C7—C6 | 116.52 (18) |
H3A—N3—H3B | 110 (3) | O8—C14—O7 | 124.7 (2) |
N1—Cd1—N2 | 160.33 (6) | O8—C14—C13 | 117.2 (2) |
N1—Cd1—O7 | 126.63 (6) | O7—C14—C13 | 118.04 (18) |
N2—Cd1—O7 | 72.61 (6) | N2—C13—C12 | 120.8 (2) |
N1—Cd1—O1 | 71.23 (7) | N2—C13—C14 | 114.95 (17) |
N2—Cd1—O1 | 110.88 (7) | C12—C13—C14 | 124.22 (19) |
O7—Cd1—O1 | 103.92 (7) | O6—C8—O5 | 126.1 (2) |
N1—Cd1—O3 | 70.42 (6) | O6—C8—C9 | 117.6 (2) |
N2—Cd1—O3 | 110.59 (7) | O5—C8—C9 | 116.27 (19) |
O7—Cd1—O3 | 86.77 (6) | C16—N4—H4C | 107.8 (18) |
O1—Cd1—O3 | 138.50 (6) | C16—N4—H4B | 108 (2) |
N1—Cd1—O5 | 90.60 (6) | H4C—N4—H4B | 113 (3) |
N2—Cd1—O5 | 70.02 (6) | C16—N4—H4A | 108.2 (19) |
O7—Cd1—O5 | 142.62 (6) | H4C—N4—H4A | 111 (3) |
O1—Cd1—O5 | 90.16 (7) | H4B—N4—H4A | 109 (3) |
O3—Cd1—O5 | 105.44 (6) | N4—C16—C17 | 109.4 (2) |
C1—O1—Cd1 | 115.64 (14) | N4—C16—C15 | 108.95 (18) |
N1—C2—C3 | 120.81 (19) | C17—C16—C15 | 114.1 (2) |
N1—C2—C1 | 115.44 (17) | N4—C16—H16 | 108.1 |
C3—C2—C1 | 123.71 (18) | C17—C16—H16 | 108.1 |
C2—N1—C6 | 121.19 (17) | C15—C16—H16 | 108.1 |
C2—N1—Cd1 | 118.94 (13) | C11—C12—C13 | 118.8 (2) |
C6—N1—Cd1 | 119.73 (13) | C11—C12—H12 | 120.6 |
N1—C6—C5 | 120.86 (19) | C13—C12—H12 | 120.6 |
N1—C6—C7 | 115.26 (17) | N3—C15—C16 | 110.77 (19) |
C5—C6—C7 | 123.83 (19) | N3—C15—H15A | 109.5 |
C8—O5—Cd1 | 116.58 (14) | C16—C15—H15A | 109.5 |
O1—C1—O2 | 126.0 (2) | N3—C15—H15B | 109.5 |
O1—C1—C2 | 117.64 (18) | C16—C15—H15B | 109.5 |
O2—C1—C2 | 116.35 (18) | H15A—C15—H15B | 108.1 |
C7—O3—Cd1 | 114.43 (12) | C12—C11—C10 | 120.0 (2) |
C14—O7—Cd1 | 116.65 (14) | C12—C11—H11 | 120.0 |
C9—N2—C13 | 121.17 (18) | C10—C11—H11 | 120.0 |
C9—N2—Cd1 | 121.10 (14) | C11—C10—C9 | 118.5 (2) |
C13—N2—Cd1 | 117.70 (14) | C11—C10—H10 | 120.8 |
C6—C5—C4 | 118.7 (2) | C9—C10—H10 | 120.8 |
C6—C5—H5 | 120.6 | C16—C17—H17A | 109.5 |
C4—C5—H5 | 120.6 | C16—C17—H17B | 109.5 |
N2—C9—C10 | 120.7 (2) | H17A—C17—H17B | 109.5 |
N2—C9—C8 | 116.00 (18) | C16—C17—H17C | 109.5 |
C10—C9—C8 | 123.3 (2) | H17A—C17—H17C | 109.5 |
C3—C4—C5 | 119.84 (19) | H17B—C17—H17C | 109.5 |
C3—C4—H4 | 120.1 | H9A—O9—H9B | 104 (4) |
C5—C4—H4 | 120.1 | H10B—O10—H10A | 106 (4) |
C4—C3—C2 | 118.59 (19) | ||
N1—Cd1—O1—C1 | 9.37 (15) | O3—Cd1—N2—C9 | −100.88 (15) |
N2—Cd1—O1—C1 | −149.82 (15) | O5—Cd1—N2—C9 | −1.33 (15) |
O7—Cd1—O1—C1 | 133.77 (16) | N1—Cd1—N2—C13 | 170.20 (16) |
O3—Cd1—O1—C1 | 32.7 (2) | O7—Cd1—N2—C13 | 1.35 (14) |
O5—Cd1—O1—C1 | −81.21 (16) | O1—Cd1—N2—C13 | −97.29 (15) |
C3—C2—N1—C6 | 0.3 (3) | O3—Cd1—N2—C13 | 80.95 (15) |
C1—C2—N1—C6 | −177.55 (17) | O5—Cd1—N2—C13 | −179.50 (16) |
C3—C2—N1—Cd1 | −175.32 (14) | N1—C6—C5—C4 | 0.3 (3) |
C1—C2—N1—Cd1 | 6.9 (2) | C7—C6—C5—C4 | −177.21 (19) |
N2—Cd1—N1—C2 | 91.3 (2) | C13—N2—C9—C10 | −0.2 (3) |
O7—Cd1—N1—C2 | −101.95 (15) | Cd1—N2—C9—C10 | −178.30 (16) |
O1—Cd1—N1—C2 | −8.29 (14) | C13—N2—C9—C8 | 179.24 (18) |
O3—Cd1—N1—C2 | −172.14 (16) | Cd1—N2—C9—C8 | 1.1 (2) |
O5—Cd1—N1—C2 | 81.67 (15) | C6—C5—C4—C3 | −0.1 (3) |
N2—Cd1—N1—C6 | −84.3 (2) | C5—C4—C3—C2 | −0.1 (3) |
O7—Cd1—N1—C6 | 82.38 (16) | N1—C2—C3—C4 | 0.0 (3) |
O1—Cd1—N1—C6 | 176.04 (16) | C1—C2—C3—C4 | 177.62 (19) |
O3—Cd1—N1—C6 | 12.20 (13) | Cd1—O3—C7—O4 | −160.3 (2) |
O5—Cd1—N1—C6 | −93.99 (15) | Cd1—O3—C7—C6 | 19.5 (2) |
C2—N1—C6—C5 | −0.4 (3) | N1—C6—C7—O4 | 170.5 (2) |
Cd1—N1—C6—C5 | 175.12 (15) | C5—C6—C7—O4 | −11.9 (3) |
C2—N1—C6—C7 | 177.30 (17) | N1—C6—C7—O3 | −9.4 (3) |
Cd1—N1—C6—C7 | −7.1 (2) | C5—C6—C7—O3 | 168.28 (19) |
N1—Cd1—O5—C8 | 178.02 (17) | Cd1—O7—C14—O8 | 176.57 (18) |
N2—Cd1—O5—C8 | 1.47 (16) | Cd1—O7—C14—C13 | −1.5 (3) |
O7—Cd1—O5—C8 | 2.8 (2) | C9—N2—C13—C12 | 0.2 (3) |
O1—Cd1—O5—C8 | −110.75 (17) | Cd1—N2—C13—C12 | 178.42 (15) |
O3—Cd1—O5—C8 | 108.19 (17) | C9—N2—C13—C14 | 179.35 (18) |
Cd1—O1—C1—O2 | 170.55 (18) | Cd1—N2—C13—C14 | −2.5 (2) |
Cd1—O1—C1—C2 | −9.2 (2) | O8—C14—C13—N2 | −175.54 (19) |
N1—C2—C1—O1 | 2.1 (3) | O7—C14—C13—N2 | 2.6 (3) |
C3—C2—C1—O1 | −175.7 (2) | O8—C14—C13—C12 | 3.5 (3) |
N1—C2—C1—O2 | −177.69 (19) | O7—C14—C13—C12 | −178.3 (2) |
C3—C2—C1—O2 | 4.6 (3) | Cd1—O5—C8—O6 | 177.91 (19) |
N1—Cd1—O3—C7 | −17.16 (14) | Cd1—O5—C8—C9 | −1.4 (2) |
N2—Cd1—O3—C7 | 141.91 (15) | N2—C9—C8—O6 | −179.1 (2) |
O7—Cd1—O3—C7 | −148.03 (15) | C10—C9—C8—O6 | 0.3 (3) |
O1—Cd1—O3—C7 | −40.58 (19) | N2—C9—C8—O5 | 0.3 (3) |
O5—Cd1—O3—C7 | 67.86 (15) | C10—C9—C8—O5 | 179.7 (2) |
N1—Cd1—O7—C14 | −175.19 (15) | N2—C13—C12—C11 | −0.3 (3) |
N2—Cd1—O7—C14 | 0.15 (15) | C14—C13—C12—C11 | −179.3 (2) |
O1—Cd1—O7—C14 | 108.04 (17) | N4—C16—C15—N3 | 167.86 (18) |
O3—Cd1—O7—C14 | −112.60 (17) | C17—C16—C15—N3 | −69.6 (3) |
O5—Cd1—O7—C14 | −1.2 (2) | C13—C12—C11—C10 | 0.3 (4) |
N1—Cd1—N2—C9 | −11.6 (3) | C12—C11—C10—C9 | −0.3 (4) |
O7—Cd1—N2—C9 | 179.53 (17) | N2—C9—C10—C11 | 0.2 (3) |
O1—Cd1—N2—C9 | 80.88 (16) | C8—C9—C10—C11 | −179.2 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···O10i | 0.89 (3) | 1.90 (3) | 2.780 (3) | 172 (3) |
N3—H3B···O3ii | 0.86 (3) | 2.04 (3) | 2.899 (3) | 177 (3) |
N3—H3C···O2i | 0.92 (2) | 1.89 (2) | 2.790 (3) | 164 (3) |
N4—H4A···O8ii | 0.91 (3) | 1.96 (3) | 2.870 (3) | 176 (3) |
N4—H4B···O5 | 0.83 (3) | 2.06 (3) | 2.889 (3) | 172 (3) |
N4—H4C···O9ii | 0.91 (3) | 1.90 (3) | 2.803 (3) | 170 (3) |
O9—H9A···O4iii | 0.76 (4) | 1.96 (4) | 2.708 (3) | 170 (4) |
O9—H9B···O2iv | 0.84 (4) | 2.00 (4) | 2.827 (3) | 165 (4) |
O10—H10A···O6v | 0.88 (6) | 2.04 (6) | 2.848 (4) | 151 (6) |
O10—H10B···O8vi | 0.74 (4) | 2.19 (4) | 2.835 (3) | 147 (4) |
C10—H10···O3vii | 0.93 | 2.54 | 3.298 (3) | 139 |
C12—H12···O1vi | 0.93 | 2.44 | 3.200 (3) | 139 |
Symmetry codes: (i) x+1, y, z; (ii) x, y+1, z; (iii) x−1, y, z; (iv) x, y−1, z; (v) −x+1, −y+2, −z+1; (vi) −x+1, −y+1, −z+1; (vii) −x+2, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | (C3H12N2)[Cd(C7H3NO4)2]·2H2O |
Mr | 554.80 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 8.6227 (17), 10.133 (2), 13.448 (3) |
α, β, γ (°) | 81.36 (3), 76.73 (3), 65.38 (3) |
V (Å3) | 1037.7 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.12 |
Crystal size (mm) | 0.3 × 0.2 × 0.15 |
Data collection | |
Diffractometer | Stoe IPDS 2T diffractometer |
Absorption correction | Numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) |
Tmin, Tmax | 0.764, 0.842 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11690, 5554, 4562 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.686 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.063, 1.02 |
No. of reflections | 5554 |
No. of parameters | 330 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.50, −0.37 |
Computer programs: X-AREA (Stoe & Cie, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···O10i | 0.89 (3) | 1.90 (3) | 2.780 (3) | 172 (3) |
N3—H3B···O3ii | 0.86 (3) | 2.04 (3) | 2.899 (3) | 177 (3) |
N3—H3C···O2i | 0.924 (18) | 1.891 (19) | 2.790 (3) | 164 (3) |
N4—H4A···O8ii | 0.91 (3) | 1.96 (3) | 2.870 (3) | 176 (3) |
N4—H4B···O5 | 0.83 (3) | 2.06 (3) | 2.889 (3) | 172 (3) |
N4—H4C···O9ii | 0.91 (3) | 1.90 (3) | 2.803 (3) | 170 (3) |
O9—H9A···O4iii | 0.76 (4) | 1.96 (4) | 2.708 (3) | 170 (4) |
O9—H9B···O2iv | 0.84 (4) | 2.00 (4) | 2.827 (3) | 165 (4) |
O10—H10A···O6v | 0.88 (6) | 2.04 (6) | 2.848 (4) | 151 (6) |
O10—H10B···O8vi | 0.74 (4) | 2.19 (4) | 2.835 (3) | 147 (4) |
C10—H10···O3vii | 0.93 | 2.54 | 3.298 (3) | 139 |
C12—H12···O1vi | 0.93 | 2.44 | 3.200 (3) | 139 |
Symmetry codes: (i) x+1, y, z; (ii) x, y+1, z; (iii) x−1, y, z; (iv) x, y−1, z; (v) −x+1, −y+2, −z+1; (vi) −x+1, −y+1, −z+1; (vii) −x+2, −y+1, −z+1. |
Acknowledgements
We are grateful to Tarbiat Moallem University for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Our group has previously reported some proton transfer systems, using pyridine-2,6-dicarboxylic acid(pydcH2), propane-1,2-diamine(p-1,2-da) and propane-1,3-diamine (p-1,3-da) which formed the proton transfer compounds (pnH2)(pydcH)2.2H2O(Aghabozorg, et al., 2008d), (p-1,3daH2)[Cd(pydc)2]. 3.5H2O (Aghabozorg, et al., 2008b), (C3H12N2)[Ni(C7H3NO4)2].4H2O (Hossein Aghabozorg et al., 2008c), (pnH2)[Hg(hypydc)Cl(H2O)]2.4H2O (Aghabozorg, et al., 2008a) and (p-1,2-daH2)[Zr(pydc)3].3H2O(Pasdar, et al., 2011).
The crystal structure of the title compound is shown in Fig. 1. The Cd(II) ion is six coordinated by two (pydc)2- groups in a distorted octahedral environment. The torsion angles O(5)—Cd(1)—O(3)—C(7) and O(3)—Cd(1)—O(5)—C(8) are 67.86 (15)° and 108.19 (17)° respectively, and also the angles O(7)—Cd(1)—O(1) and O(3)—Cd(1)—O(5) are 103.92 (7)° and 105.44 (6)° respectively, indicate that the two (pydc)2- units are not perpendicular to one another. In the crystal structure of the title compound, there are several intermolecular N—H···O, O—H···O and weak C—H···O hydrogen bonding (Table 1 & Fig. 2). There are also π–π stacking interactions between the pyridine rings of pydc moieties with a centroid to centroid distance of 3.4708 (16) Å (Fig. 3).