organic compounds
4-(5,6-Dihydrobenzimidazo[1,2-c]quinazolin-6-yl)benzene-1,3-diol dimethyl sulfoxide monosolvate
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bDepartment of Chemistry, Faculty of Pure and Applied Sciences, International University of Africa, Sudan, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title solvated benzimidazole compound, C20H15N3O2·C2H6OS, both the benzimidazole fused-ring system and the complete dimethyl sulfoxide solvent molecule are disordered over two sets of sites, in 0.750 (5):0.250 (5) and 0.882 (4):0.118 (4) ratios, respectively. The conformation of the pyrimidine ring is close to a half-chair for the major disorder component, whereas for the minor component it is close to a boat. The dihydroxyphenyl ring is almost perpendicular to the mean plane of the benzimidazole ring [dihedral angle = 87.3 (2)° for the major disorder component and 88.3 (5)° for the minor disorder component]. In the crystal, molecules are linked into layers parallel to (110) by O—H⋯N and C—H⋯O hydrogen bonds. A bifurcated O—H⋯(O,S) bond links the benzimidazole and solvent molecules.
Related literature
For related structures and background to benzimidazoles, see: Eltayeb et al. (2007a,b,c, 2009). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986). For ring conformations, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S160053681102304X/hb5886sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681102304X/hb5886Isup2.hkl
Supporting information file. DOI: 10.1107/S160053681102304X/hb5886Isup3.cml
To a solution of 2-(2-aminophenyl)-1H-benzimidazole (0.209 g, 1.0 mmol) in ethanol (30 ml) was added 2,4-dihydroxybenzaldehyde (0.138 g, 1.0 mmol). The color of the resulting solution is pale-pink. Then on adding zinc chloride (0.136 g, 1.0 mmol), the color of solution changed to yellowish-pink. The mixture was refluxed with stirring for 3 hours. The product (yellow precipitate) was obtained by evaporation of the solvent under reduced pressure using a rotary evaporator. Yellow blocks of (I) were formed after several days of slow evaporation of an acetone solution layered with a small amount of dimethylsulfoxide at room temperature.
All disordered components were subjected to rigid bond and similarity restraints. All minor disordered components were refined isotropically. The O-bound hydrogen atoms were located from difference Fourier map and refined as riding on their parent atom, with Uiso(H) = 1.5 Ueq(O). The rest of the hydrogen atoms were positioned geomatrically [C–H = 0.93–0.98 Å; N–H = 0.86 Å] and refined using a riding model, with Uiso(H) = 1.2 or 1.5 Ueq(C,N or Cmethyl). A rotating-group model were applied for methyl groups.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C20H15N3O2·C2H6OS | F(000) = 1712 |
Mr = 407.48 | Dx = 1.418 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 9998 reflections |
a = 9.9310 (18) Å | θ = 2.5–29.9° |
b = 16.342 (3) Å | µ = 0.20 mm−1 |
c = 23.516 (5) Å | T = 100 K |
V = 3816.5 (13) Å3 | Block, yellow |
Z = 8 | 0.33 × 0.28 × 0.27 mm |
Bruker APEXII DUO CCD diffractometer | 3345 independent reflections |
Radiation source: fine-focus sealed tube | 3118 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
ϕ and ω scans | θmax = 25.0°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −11→11 |
Tmin = 0.937, Tmax = 0.949 | k = −19→19 |
22793 measured reflections | l = −27→27 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.096 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.208 | H-atom parameters constrained |
S = 1.28 | w = 1/[σ2(Fo2) + (0.P)2 + 23.9034P] where P = (Fo2 + 2Fc2)/3 |
3345 reflections | (Δ/σ)max < 0.001 |
348 parameters | Δρmax = 0.33 e Å−3 |
514 restraints | Δρmin = −0.37 e Å−3 |
C20H15N3O2·C2H6OS | V = 3816.5 (13) Å3 |
Mr = 407.48 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 9.9310 (18) Å | µ = 0.20 mm−1 |
b = 16.342 (3) Å | T = 100 K |
c = 23.516 (5) Å | 0.33 × 0.28 × 0.27 mm |
Bruker APEXII DUO CCD diffractometer | 3345 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3118 reflections with I > 2σ(I) |
Tmin = 0.937, Tmax = 0.949 | Rint = 0.031 |
22793 measured reflections |
R[F2 > 2σ(F2)] = 0.096 | 514 restraints |
wR(F2) = 0.208 | H-atom parameters constrained |
S = 1.28 | w = 1/[σ2(Fo2) + (0.P)2 + 23.9034P] where P = (Fo2 + 2Fc2)/3 |
3345 reflections | Δρmax = 0.33 e Å−3 |
348 parameters | Δρmin = −0.37 e Å−3 |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.4247 (3) | 0.5246 (2) | 0.06384 (15) | 0.0314 (8) | |
H1O1 | 0.3349 | 0.5081 | 0.0588 | 0.047* | |
O2 | 0.2150 (3) | 0.6868 (2) | 0.20967 (16) | 0.0310 (8) | |
H1O2 | 0.1510 | 0.6572 | 0.1944 | 0.047* | |
N1A | 0.7956 (5) | 0.6144 (3) | 0.1050 (2) | 0.0221 (12) | 0.750 (5) |
N2A | 0.9792 (5) | 0.6498 (3) | 0.1550 (2) | 0.0242 (12) | 0.750 (5) |
N3A | 0.7010 (5) | 0.4845 (3) | 0.1064 (2) | 0.0234 (12) | 0.750 (5) |
H3AB | 0.6761 | 0.4464 | 0.0834 | 0.028* | 0.750 (5) |
C1A | 0.8411 (7) | 0.6865 (4) | 0.0810 (4) | 0.0241 (15) | 0.750 (5) |
C2A | 0.7922 (7) | 0.7319 (5) | 0.0355 (3) | 0.0279 (15) | 0.750 (5) |
H2AA | 0.7158 | 0.7164 | 0.0153 | 0.033* | 0.750 (5) |
C3A | 0.8652 (8) | 0.8019 (5) | 0.0221 (3) | 0.0327 (17) | 0.750 (5) |
H3AA | 0.8355 | 0.8353 | −0.0074 | 0.039* | 0.750 (5) |
C4A | 0.9809 (9) | 0.8230 (4) | 0.0515 (4) | 0.0324 (17) | 0.750 (5) |
H4AA | 1.0281 | 0.8696 | 0.0406 | 0.039* | 0.750 (5) |
C5A | 1.0286 (7) | 0.7770 (4) | 0.0966 (4) | 0.0288 (16) | 0.750 (5) |
H5AA | 1.1064 | 0.7918 | 0.1160 | 0.035* | 0.750 (5) |
C6A | 0.9545 (8) | 0.7069 (4) | 0.1120 (3) | 0.0226 (14) | 0.750 (5) |
C7A | 0.8802 (6) | 0.5969 (4) | 0.1489 (3) | 0.0190 (13) | 0.750 (5) |
C8A | 0.8574 (8) | 0.5213 (4) | 0.1808 (3) | 0.0203 (15) | 0.750 (5) |
C9A | 0.9260 (7) | 0.5022 (4) | 0.2303 (3) | 0.0269 (14) | 0.750 (5) |
H9AA | 0.9850 | 0.5403 | 0.2458 | 0.032* | 0.750 (5) |
C10A | 0.9087 (10) | 0.4281 (5) | 0.2569 (4) | 0.030 (2) | 0.750 (5) |
H10A | 0.9562 | 0.4156 | 0.2898 | 0.036* | 0.750 (5) |
C11A | 0.8185 (8) | 0.3722 (5) | 0.2334 (4) | 0.0282 (19) | 0.750 (5) |
H11A | 0.8052 | 0.3220 | 0.2512 | 0.034* | 0.750 (5) |
C12A | 0.7486 (6) | 0.3901 (4) | 0.1842 (3) | 0.0269 (15) | 0.750 (5) |
H12A | 0.6903 | 0.3515 | 0.1688 | 0.032* | 0.750 (5) |
C13A | 0.7646 (6) | 0.4660 (4) | 0.1571 (3) | 0.0209 (13) | 0.750 (5) |
N1B | 0.7996 (14) | 0.5740 (8) | 0.1323 (6) | 0.019 (3)* | 0.250 (5) |
N2B | 0.9819 (14) | 0.6061 (8) | 0.1829 (6) | 0.021 (3)* | 0.250 (5) |
N3B | 0.7269 (15) | 0.6445 (9) | 0.0489 (7) | 0.027 (4)* | 0.250 (5) |
H3BB | 0.6960 | 0.6426 | 0.0148 | 0.032* | 0.250 (5) |
C1B | 0.818 (2) | 0.5089 (12) | 0.1694 (9) | 0.019 (5)* | 0.250 (5) |
C2B | 0.747 (2) | 0.4368 (13) | 0.1770 (9) | 0.025 (5)* | 0.250 (5) |
H2BA | 0.6716 | 0.4247 | 0.1551 | 0.030* | 0.250 (5) |
C3B | 0.794 (3) | 0.3833 (15) | 0.2191 (12) | 0.026 (7)* | 0.250 (5) |
H3BA | 0.7516 | 0.3332 | 0.2251 | 0.031* | 0.250 (5) |
C4B | 0.903 (3) | 0.4067 (14) | 0.2515 (13) | 0.022 (7)* | 0.250 (5) |
H4BA | 0.9305 | 0.3717 | 0.2805 | 0.027* | 0.250 (5) |
C5B | 0.976 (2) | 0.4780 (11) | 0.2440 (8) | 0.023 (5)* | 0.250 (5) |
H5BA | 1.0494 | 0.4911 | 0.2667 | 0.028* | 0.250 (5) |
C6B | 0.932 (2) | 0.5296 (10) | 0.1998 (8) | 0.029 (5)* | 0.250 (5) |
C7B | 0.902 (2) | 0.6279 (10) | 0.1412 (8) | 0.024 (5)* | 0.250 (5) |
C8B | 0.904 (2) | 0.7028 (12) | 0.1076 (9) | 0.022 (6)* | 0.250 (5) |
C9B | 1.001 (2) | 0.7629 (13) | 0.1161 (9) | 0.027 (6)* | 0.250 (5) |
H9BA | 1.0598 | 0.7584 | 0.1468 | 0.032* | 0.250 (5) |
C10B | 1.012 (2) | 0.8281 (13) | 0.0804 (9) | 0.030 (5)* | 0.250 (5) |
H10B | 1.0761 | 0.8686 | 0.0866 | 0.036* | 0.250 (5) |
C11B | 0.925 (2) | 0.8325 (13) | 0.0348 (9) | 0.025 (5)* | 0.250 (5) |
H11B | 0.9264 | 0.8788 | 0.0118 | 0.029* | 0.250 (5) |
C12B | 0.835 (2) | 0.7708 (13) | 0.0221 (8) | 0.017 (5)* | 0.250 (5) |
H12B | 0.7886 | 0.7710 | −0.0123 | 0.020* | 0.250 (5) |
C13B | 0.8146 (19) | 0.7077 (11) | 0.0616 (8) | 0.011 (4)* | 0.250 (5) |
C14 | 0.6765 (5) | 0.5734 (3) | 0.0925 (2) | 0.0274 (11) | |
H14A | 0.6600 | 0.5780 | 0.0516 | 0.033* | 0.750 (5) |
H14B | 0.6588 | 0.5220 | 0.0743 | 0.033* | 0.250 (5) |
C15 | 0.5554 (5) | 0.6069 (3) | 0.1234 (2) | 0.0215 (10) | |
C16 | 0.4288 (5) | 0.5788 (3) | 0.1079 (2) | 0.0230 (10) | |
C17 | 0.3134 (4) | 0.6063 (3) | 0.1349 (2) | 0.0208 (10) | |
H17A | 0.2291 | 0.5887 | 0.1228 | 0.025* | |
C18 | 0.3246 (4) | 0.6602 (3) | 0.1801 (2) | 0.0220 (10) | |
C19 | 0.4505 (4) | 0.6897 (3) | 0.1959 (2) | 0.0239 (10) | |
H19A | 0.4583 | 0.7274 | 0.2253 | 0.029* | |
C20 | 0.5633 (5) | 0.6628 (3) | 0.1677 (2) | 0.0223 (10) | |
H20A | 0.6472 | 0.6826 | 0.1786 | 0.027* | |
S1A | 0.07237 (15) | 0.44769 (9) | 0.07749 (7) | 0.0329 (5) | 0.882 (4) |
O3A | 0.1950 (8) | 0.4548 (5) | 0.0386 (4) | 0.045 (2) | 0.882 (4) |
C21A | −0.0447 (6) | 0.3857 (5) | 0.0400 (4) | 0.0478 (19) | 0.882 (4) |
H21A | −0.0817 | 0.4163 | 0.0088 | 0.072* | 0.882 (4) |
H21B | −0.1160 | 0.3695 | 0.0652 | 0.072* | 0.882 (4) |
H21C | 0.0002 | 0.3379 | 0.0257 | 0.072* | 0.882 (4) |
C22A | 0.1182 (9) | 0.3767 (6) | 0.1298 (4) | 0.056 (2) | 0.882 (4) |
H22A | 0.1978 | 0.3954 | 0.1490 | 0.083* | 0.882 (4) |
H22B | 0.1357 | 0.3247 | 0.1124 | 0.083* | 0.882 (4) |
H22C | 0.0462 | 0.3711 | 0.1568 | 0.083* | 0.882 (4) |
S1B | 0.1514 (13) | 0.3778 (8) | 0.0710 (6) | 0.045 (4)* | 0.118 (4) |
O3B | 0.168 (5) | 0.461 (2) | 0.042 (2) | 0.015 (10)* | 0.118 (4) |
C21B | −0.020 (3) | 0.352 (3) | 0.060 (2) | 0.049 (16)* | 0.118 (4) |
H21D | −0.0723 | 0.4010 | 0.0553 | 0.074* | 0.118 (4) |
H21E | −0.0533 | 0.3215 | 0.0916 | 0.074* | 0.118 (4) |
H21F | −0.0280 | 0.3193 | 0.0259 | 0.074* | 0.118 (4) |
C22B | 0.140 (8) | 0.400 (5) | 0.1440 (10) | 0.07 (3)* | 0.118 (4) |
H22D | 0.2266 | 0.4179 | 0.1576 | 0.104* | 0.118 (4) |
H22E | 0.1125 | 0.3523 | 0.1643 | 0.104* | 0.118 (4) |
H22F | 0.0755 | 0.4432 | 0.1497 | 0.104* | 0.118 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0202 (17) | 0.039 (2) | 0.035 (2) | 0.0028 (15) | −0.0027 (15) | −0.0165 (16) |
O2 | 0.0164 (16) | 0.0299 (18) | 0.047 (2) | −0.0039 (14) | 0.0039 (15) | −0.0156 (16) |
N1A | 0.016 (2) | 0.021 (3) | 0.030 (3) | 0.000 (2) | 0.003 (2) | 0.004 (2) |
N2A | 0.017 (3) | 0.018 (3) | 0.037 (3) | −0.005 (2) | 0.002 (2) | 0.000 (2) |
N3A | 0.019 (3) | 0.016 (2) | 0.036 (3) | 0.001 (2) | −0.001 (2) | −0.007 (2) |
C1A | 0.015 (3) | 0.020 (3) | 0.037 (4) | 0.004 (3) | 0.009 (3) | 0.003 (3) |
C2A | 0.024 (3) | 0.024 (4) | 0.035 (4) | 0.003 (3) | 0.007 (3) | 0.007 (3) |
C3A | 0.036 (4) | 0.018 (4) | 0.044 (4) | −0.002 (4) | 0.011 (3) | 0.002 (3) |
C4A | 0.032 (4) | 0.017 (3) | 0.048 (5) | −0.002 (3) | 0.013 (4) | 0.003 (3) |
C5A | 0.021 (3) | 0.021 (4) | 0.045 (4) | −0.003 (3) | 0.012 (3) | 0.000 (3) |
C6A | 0.019 (4) | 0.017 (3) | 0.032 (4) | 0.006 (3) | 0.009 (3) | −0.003 (2) |
C7A | 0.010 (3) | 0.018 (3) | 0.030 (3) | 0.001 (2) | 0.004 (2) | −0.004 (3) |
C8A | 0.013 (4) | 0.015 (3) | 0.033 (4) | 0.004 (2) | 0.002 (3) | −0.002 (3) |
C9A | 0.021 (3) | 0.018 (3) | 0.042 (4) | 0.002 (3) | 0.000 (3) | −0.001 (3) |
C10A | 0.032 (4) | 0.022 (4) | 0.036 (4) | 0.003 (4) | −0.003 (3) | 0.004 (4) |
C11A | 0.022 (4) | 0.017 (3) | 0.046 (5) | 0.006 (3) | 0.004 (4) | 0.008 (3) |
C12A | 0.021 (3) | 0.014 (3) | 0.045 (4) | 0.001 (2) | 0.005 (3) | −0.001 (3) |
C13A | 0.013 (3) | 0.014 (3) | 0.036 (4) | 0.007 (2) | 0.006 (3) | −0.001 (3) |
C14 | 0.018 (2) | 0.033 (3) | 0.031 (3) | 0.006 (2) | −0.001 (2) | 0.000 (2) |
C15 | 0.022 (2) | 0.018 (2) | 0.025 (2) | 0.0022 (18) | 0.0027 (19) | 0.0044 (18) |
C16 | 0.024 (2) | 0.018 (2) | 0.027 (2) | 0.0045 (19) | −0.004 (2) | −0.0021 (19) |
C17 | 0.016 (2) | 0.017 (2) | 0.030 (3) | −0.0035 (17) | −0.0017 (19) | 0.0008 (19) |
C18 | 0.014 (2) | 0.017 (2) | 0.035 (3) | 0.0005 (17) | 0.0036 (19) | 0.0002 (19) |
C19 | 0.019 (2) | 0.021 (2) | 0.032 (3) | 0.0000 (18) | −0.001 (2) | −0.005 (2) |
C20 | 0.019 (2) | 0.016 (2) | 0.033 (3) | −0.0041 (18) | −0.003 (2) | 0.0026 (19) |
S1A | 0.0251 (8) | 0.0290 (8) | 0.0447 (9) | −0.0031 (6) | 0.0018 (7) | −0.0083 (7) |
O3A | 0.029 (4) | 0.062 (4) | 0.045 (3) | −0.017 (3) | 0.007 (3) | −0.013 (3) |
C21A | 0.025 (3) | 0.060 (5) | 0.059 (5) | −0.008 (3) | 0.004 (3) | −0.021 (4) |
C22A | 0.039 (4) | 0.062 (6) | 0.066 (5) | 0.018 (4) | 0.008 (4) | 0.021 (5) |
O1—C16 | 1.363 (5) | C3B—H3BA | 0.9300 |
O1—H1O1 | 0.9391 | C4B—C5B | 1.382 (19) |
O2—C18 | 1.362 (5) | C4B—H4BA | 0.9300 |
O2—H1O2 | 0.8748 | C5B—C6B | 1.408 (17) |
N1A—C7A | 1.362 (8) | C5B—H5BA | 0.9300 |
N1A—C1A | 1.381 (8) | C7B—C8B | 1.457 (15) |
N1A—C14 | 1.391 (7) | C8B—C9B | 1.395 (18) |
N2A—C7A | 1.317 (7) | C8B—C13B | 1.399 (17) |
N2A—C6A | 1.397 (8) | C9B—C10B | 1.361 (18) |
N3A—C13A | 1.382 (8) | C9B—H9BA | 0.9300 |
N3A—C14 | 1.509 (7) | C10B—C11B | 1.381 (18) |
N3A—H3AB | 0.8600 | C10B—H10B | 0.9300 |
N3A—H14B | 1.0594 | C11B—C12B | 1.378 (18) |
C1A—C6A | 1.383 (11) | C11B—H11B | 0.9300 |
C1A—C2A | 1.390 (10) | C12B—C13B | 1.403 (17) |
C2A—C3A | 1.390 (10) | C12B—H12B | 0.9300 |
C2A—H2AA | 0.9300 | C14—C15 | 1.508 (6) |
C3A—C4A | 1.386 (12) | C14—H14A | 0.9800 |
C3A—H3AA | 0.9300 | C14—H14B | 0.9601 |
C4A—C5A | 1.384 (12) | C15—C16 | 1.387 (6) |
C4A—H4AA | 0.9300 | C15—C20 | 1.388 (6) |
C5A—C6A | 1.408 (10) | C16—C17 | 1.386 (6) |
C5A—H5AA | 0.9300 | C17—C18 | 1.384 (7) |
C7A—C8A | 1.463 (9) | C17—H17A | 0.9300 |
C8A—C9A | 1.383 (11) | C18—C19 | 1.391 (6) |
C8A—C13A | 1.406 (10) | C19—C20 | 1.373 (6) |
C9A—C10A | 1.373 (11) | C19—H19A | 0.9300 |
C9A—H9AA | 0.9300 | C20—H20A | 0.9300 |
C10A—C11A | 1.393 (11) | S1A—O3A | 1.528 (7) |
C10A—H10A | 0.9300 | S1A—C22A | 1.752 (8) |
C11A—C12A | 1.381 (11) | S1A—C21A | 1.776 (6) |
C11A—H11A | 0.9300 | C21A—H21A | 0.9600 |
C12A—C13A | 1.404 (9) | C21A—H21B | 0.9600 |
C12A—H12A | 0.9300 | C21A—H21C | 0.9600 |
N1B—C7B | 1.359 (15) | C22A—H22A | 0.9600 |
N1B—C1B | 1.388 (16) | C22A—H22B | 0.9600 |
N1B—C14 | 1.540 (14) | C22A—H22C | 0.9600 |
N2B—C7B | 1.313 (15) | S1B—O3B | 1.534 (19) |
N2B—C6B | 1.401 (15) | S1B—C22B | 1.76 (2) |
N3B—C13B | 1.384 (16) | S1B—C21B | 1.776 (19) |
N3B—C14 | 1.629 (15) | C21B—H21D | 0.9600 |
N3B—H3BB | 0.8600 | C21B—H21E | 0.9600 |
C1B—C6B | 1.378 (17) | C21B—H21F | 0.9600 |
C1B—C2B | 1.387 (17) | C22B—H22D | 0.9600 |
C2B—C3B | 1.399 (18) | C22B—H22E | 0.9600 |
C2B—H2BA | 0.9300 | C22B—H22F | 0.9600 |
C3B—C4B | 1.38 (2) | ||
C16—O1—H1O1 | 108.1 | N2B—C7B—C8B | 128.8 (15) |
C18—O2—H1O2 | 101.3 | N1B—C7B—C8B | 118.0 (13) |
C7A—N1A—C1A | 106.7 (6) | C9B—C8B—C13B | 120.6 (14) |
C7A—N1A—C14 | 125.6 (5) | C9B—C8B—C7B | 121.5 (16) |
C1A—N1A—C14 | 127.1 (6) | C13B—C8B—C7B | 117.4 (16) |
C7A—N2A—C6A | 103.3 (6) | C10B—C9B—C8B | 121.2 (16) |
C13A—N3A—C14 | 118.1 (5) | C10B—C9B—H9BA | 119.4 |
C13A—N3A—H3AB | 121.0 | C8B—C9B—H9BA | 119.4 |
C14—N3A—H3AB | 121.0 | C9B—C10B—C11B | 118.1 (17) |
C13A—N3A—H14B | 157.2 | C9B—C10B—H10B | 120.9 |
H3AB—N3A—H14B | 81.8 | C11B—C10B—H10B | 120.9 |
N1A—C1A—C6A | 104.9 (7) | C12B—C11B—C10B | 122.4 (17) |
N1A—C1A—C2A | 131.0 (7) | C12B—C11B—H11B | 118.8 |
C6A—C1A—C2A | 124.2 (6) | C10B—C11B—H11B | 118.8 |
C3A—C2A—C1A | 115.6 (6) | C11B—C12B—C13B | 119.2 (15) |
C3A—C2A—H2AA | 122.2 | C11B—C12B—H12B | 120.4 |
C1A—C2A—H2AA | 122.2 | C13B—C12B—H12B | 120.4 |
C4A—C3A—C2A | 121.7 (7) | N3B—C13B—C8B | 121.4 (17) |
C4A—C3A—H3AA | 119.2 | N3B—C13B—C12B | 119.8 (16) |
C2A—C3A—H3AA | 119.2 | C8B—C13B—C12B | 117.6 (13) |
C5A—C4A—C3A | 122.0 (7) | N1A—C14—C15 | 113.7 (4) |
C5A—C4A—H4AA | 119.0 | N1A—C14—N3A | 106.4 (4) |
C3A—C4A—H4AA | 119.0 | C15—C14—N3A | 111.9 (4) |
C4A—C5A—C6A | 117.4 (7) | C15—C14—N1B | 109.8 (6) |
C4A—C5A—H5AA | 121.3 | N3A—C14—N1B | 75.3 (6) |
C6A—C5A—H5AA | 121.3 | N1A—C14—N3B | 61.8 (6) |
C1A—C6A—N2A | 111.3 (7) | C15—C14—N3B | 106.8 (6) |
C1A—C6A—C5A | 119.1 (7) | N3A—C14—N3B | 140.7 (7) |
N2A—C6A—C5A | 129.6 (8) | N1B—C14—N3B | 97.7 (7) |
N2A—C7A—N1A | 113.9 (6) | N1A—C14—H14A | 108.2 |
N2A—C7A—C8A | 127.9 (6) | C15—C14—H14A | 108.2 |
N1A—C7A—C8A | 118.1 (6) | N3A—C14—H14A | 108.2 |
C9A—C8A—C13A | 120.7 (6) | N1B—C14—H14A | 136.9 |
C9A—C8A—C7A | 123.1 (7) | N3B—C14—H14A | 51.5 |
C13A—C8A—C7A | 116.1 (7) | N1A—C14—H14B | 132.2 |
C10A—C9A—C8A | 121.4 (7) | C15—C14—H14B | 112.7 |
C10A—C9A—H9AA | 119.3 | N1B—C14—H14B | 115.0 |
C8A—C9A—H9AA | 119.3 | N3B—C14—H14B | 113.5 |
C9A—C10A—C11A | 118.5 (8) | H14A—C14—H14B | 66.2 |
C9A—C10A—H10A | 120.7 | C16—C15—C20 | 117.8 (4) |
C11A—C10A—H10A | 120.7 | C16—C15—C14 | 118.4 (4) |
C12A—C11A—C10A | 121.1 (7) | C20—C15—C14 | 123.8 (4) |
C12A—C11A—H11A | 119.5 | O1—C16—C17 | 122.3 (4) |
C10A—C11A—H11A | 119.5 | O1—C16—C15 | 116.3 (4) |
C11A—C12A—C13A | 120.7 (6) | C17—C16—C15 | 121.4 (4) |
C11A—C12A—H12A | 119.6 | C18—C17—C16 | 119.5 (4) |
C13A—C12A—H12A | 119.6 | C18—C17—H17A | 120.2 |
N3A—C13A—C12A | 122.2 (6) | C16—C17—H17A | 120.2 |
N3A—C13A—C8A | 120.1 (7) | O2—C18—C17 | 122.0 (4) |
C12A—C13A—C8A | 117.5 (6) | O2—C18—C19 | 118.2 (4) |
C7B—N1B—C1B | 107.4 (13) | C17—C18—C19 | 119.8 (4) |
C7B—N1B—C14 | 133.6 (11) | C20—C19—C18 | 119.6 (4) |
C1B—N1B—C14 | 118.9 (12) | C20—C19—H19A | 120.2 |
C7B—N2B—C6B | 103.8 (12) | C18—C19—H19A | 120.2 |
C13B—N3B—C14 | 126.2 (13) | C19—C20—C15 | 121.8 (4) |
C13B—N3B—H3BB | 116.9 | C19—C20—H20A | 119.1 |
C14—N3B—H3BB | 116.9 | C15—C20—H20A | 119.1 |
C6B—C1B—C2B | 124.2 (14) | O3A—S1A—C22A | 105.3 (4) |
C6B—C1B—N1B | 104.3 (14) | O3A—S1A—C21A | 105.5 (4) |
C2B—C1B—N1B | 131.5 (17) | C22A—S1A—C21A | 98.1 (5) |
C1B—C2B—C3B | 116.9 (16) | O3B—S1B—C22B | 105 (2) |
C1B—C2B—H2BA | 121.5 | O3B—S1B—C21B | 104.4 (19) |
C3B—C2B—H2BA | 121.5 | C22B—S1B—C21B | 97.8 (19) |
C4B—C3B—C2B | 118.5 (18) | S1B—C21B—H21D | 109.5 |
C4B—C3B—H3BA | 120.7 | S1B—C21B—H21E | 109.5 |
C2B—C3B—H3BA | 120.7 | H21D—C21B—H21E | 109.5 |
C5B—C4B—C3B | 125.0 (19) | S1B—C21B—H21F | 109.5 |
C5B—C4B—H4BA | 117.5 | H21D—C21B—H21F | 109.5 |
C3B—C4B—H4BA | 117.5 | H21E—C21B—H21F | 109.5 |
C4B—C5B—C6B | 116.0 (16) | S1B—C22B—H22D | 109.5 |
C4B—C5B—H5BA | 122.0 | S1B—C22B—H22E | 109.5 |
C6B—C5B—H5BA | 122.0 | H22D—C22B—H22E | 109.5 |
C1B—C6B—N2B | 111.2 (14) | S1B—C22B—H22F | 109.5 |
C1B—C6B—C5B | 119.3 (14) | H22D—C22B—H22F | 109.5 |
N2B—C6B—C5B | 129.3 (16) | H22E—C22B—H22F | 109.5 |
N2B—C7B—N1B | 113.0 (12) | ||
C7A—N1A—C1A—C6A | 1.5 (7) | N2B—C7B—C8B—C9B | 2 (4) |
C14—N1A—C1A—C6A | 173.1 (5) | N1B—C7B—C8B—C9B | 177 (2) |
C7A—N1A—C1A—C2A | −179.6 (7) | N2B—C7B—C8B—C13B | 174 (2) |
C14—N1A—C1A—C2A | −8.0 (11) | N1B—C7B—C8B—C13B | −11 (4) |
N1A—C1A—C2A—C3A | −179.0 (7) | C13B—C8B—C9B—C10B | 0 (4) |
C6A—C1A—C2A—C3A | −0.4 (10) | C7B—C8B—C9B—C10B | 172 (2) |
C1A—C2A—C3A—C4A | 1.8 (10) | C8B—C9B—C10B—C11B | −1 (4) |
C2A—C3A—C4A—C5A | −1.6 (11) | C9B—C10B—C11B—C12B | −5 (4) |
C3A—C4A—C5A—C6A | 0.0 (10) | C10B—C11B—C12B—C13B | 11 (4) |
N1A—C1A—C6A—N2A | −0.8 (7) | C14—N3B—C13B—C8B | 21 (3) |
C2A—C1A—C6A—N2A | −179.8 (6) | C14—N3B—C13B—C12B | −171.4 (16) |
N1A—C1A—C6A—C5A | 177.7 (6) | C9B—C8B—C13B—N3B | 173 (2) |
C2A—C1A—C6A—C5A | −1.2 (10) | C7B—C8B—C13B—N3B | 1 (4) |
C7A—N2A—C6A—C1A | −0.2 (7) | C9B—C8B—C13B—C12B | 6 (4) |
C7A—N2A—C6A—C5A | −178.6 (7) | C7B—C8B—C13B—C12B | −167 (2) |
C4A—C5A—C6A—C1A | 1.4 (10) | C11B—C12B—C13B—N3B | −179 (2) |
C4A—C5A—C6A—N2A | 179.6 (7) | C11B—C12B—C13B—C8B | −11 (3) |
C6A—N2A—C7A—N1A | 1.2 (7) | C7A—N1A—C14—C15 | 87.5 (7) |
C6A—N2A—C7A—C8A | 176.9 (6) | C1A—N1A—C14—C15 | −82.6 (7) |
C1A—N1A—C7A—N2A | −1.8 (7) | C7A—N1A—C14—N3A | −36.1 (7) |
C14—N1A—C7A—N2A | −173.6 (5) | C1A—N1A—C14—N3A | 153.8 (6) |
C1A—N1A—C7A—C8A | −177.9 (6) | C7A—N1A—C14—N1B | −4.0 (10) |
C14—N1A—C7A—C8A | 10.3 (9) | C1A—N1A—C14—N1B | −174.1 (12) |
N2A—C7A—C8A—C9A | 12.6 (11) | C7A—N1A—C14—N3B | −175.4 (9) |
N1A—C7A—C8A—C9A | −171.9 (6) | C1A—N1A—C14—N3B | 14.5 (8) |
N2A—C7A—C8A—C13A | −164.7 (6) | C13A—N3A—C14—N1A | 45.1 (6) |
N1A—C7A—C8A—C13A | 10.8 (9) | C13A—N3A—C14—C15 | −79.6 (6) |
C13A—C8A—C9A—C10A | 1.8 (11) | C13A—N3A—C14—N1B | 26.1 (7) |
C7A—C8A—C9A—C10A | −175.4 (8) | C13A—N3A—C14—N3B | 110.4 (11) |
C8A—C9A—C10A—C11A | −0.9 (14) | C7B—N1B—C14—N1A | 9.0 (16) |
C9A—C10A—C11A—C12A | 0.6 (14) | C1B—N1B—C14—N1A | −172 (2) |
C10A—C11A—C12A—C13A | −1.3 (12) | C7B—N1B—C14—C15 | −94 (2) |
C14—N3A—C13A—C12A | 155.6 (5) | C1B—N1B—C14—C15 | 84.4 (17) |
C14—N3A—C13A—C8A | −29.7 (8) | C7B—N1B—C14—N3A | 157 (2) |
C11A—C12A—C13A—N3A | 177.0 (6) | C1B—N1B—C14—N3A | −24.1 (15) |
C11A—C12A—C13A—C8A | 2.2 (9) | C7B—N1B—C14—N3B | 17 (2) |
C9A—C8A—C13A—N3A | −177.3 (6) | C1B—N1B—C14—N3B | −164.6 (17) |
C7A—C8A—C13A—N3A | 0.1 (9) | C13B—N3B—C14—N1A | −21.5 (15) |
C9A—C8A—C13A—C12A | −2.4 (9) | C13B—N3B—C14—C15 | 86.8 (17) |
C7A—C8A—C13A—C12A | 175.0 (6) | C13B—N3B—C14—N3A | −102.9 (18) |
C7B—N1B—C1B—C6B | 1 (3) | C13B—N3B—C14—N1B | −26.6 (18) |
C14—N1B—C1B—C6B | −177.7 (16) | N1A—C14—C15—C16 | 170.5 (4) |
C7B—N1B—C1B—C2B | −178 (3) | N3A—C14—C15—C16 | −68.9 (6) |
C14—N1B—C1B—C2B | 3 (4) | N1B—C14—C15—C16 | −150.5 (6) |
C6B—C1B—C2B—C3B | 1 (4) | N3B—C14—C15—C16 | 104.5 (7) |
N1B—C1B—C2B—C3B | −180 (3) | N1A—C14—C15—C20 | −11.2 (7) |
C1B—C2B—C3B—C4B | 2 (4) | N3A—C14—C15—C20 | 109.3 (5) |
C2B—C3B—C4B—C5B | −3 (5) | N1B—C14—C15—C20 | 27.7 (8) |
C3B—C4B—C5B—C6B | 0 (5) | N3B—C14—C15—C20 | −77.3 (7) |
C2B—C1B—C6B—N2B | −180 (2) | C20—C15—C16—O1 | 179.3 (4) |
N1B—C1B—C6B—N2B | 1 (3) | C14—C15—C16—O1 | −2.4 (6) |
C2B—C1B—C6B—C5B | −4 (4) | C20—C15—C16—C17 | 1.0 (7) |
N1B—C1B—C6B—C5B | 176.6 (18) | C14—C15—C16—C17 | 179.3 (4) |
C7B—N2B—C6B—C1B | −3 (3) | O1—C16—C17—C18 | 178.8 (4) |
C7B—N2B—C6B—C5B | −178 (2) | C15—C16—C17—C18 | −3.0 (7) |
C4B—C5B—C6B—C1B | 3 (4) | C16—C17—C18—O2 | −177.4 (4) |
C4B—C5B—C6B—N2B | 178 (2) | C16—C17—C18—C19 | 3.6 (7) |
C6B—N2B—C7B—N1B | 4 (2) | O2—C18—C19—C20 | 178.7 (4) |
C6B—N2B—C7B—C8B | 179 (3) | C17—C18—C19—C20 | −2.3 (7) |
C1B—N1B—C7B—N2B | −3 (3) | C18—C19—C20—C15 | 0.3 (7) |
C14—N1B—C7B—N2B | 175.5 (14) | C16—C15—C20—C19 | 0.4 (7) |
C1B—N1B—C7B—C8B | −179 (2) | C14—C15—C20—C19 | −177.9 (4) |
C14—N1B—C7B—C8B | 0 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···S1A | 0.94 | 2.82 | 3.732 (3) | 163 |
O1—H1O1···O3A | 0.94 | 1.71 | 2.619 (9) | 163 |
O2—H1O2···N2Ai | 0.88 | 1.95 | 2.739 (6) | 150 |
C11A—H11A···O2ii | 0.93 | 2.40 | 3.329 (9) | 174 |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C20H15N3O2·C2H6OS |
Mr | 407.48 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 100 |
a, b, c (Å) | 9.9310 (18), 16.342 (3), 23.516 (5) |
V (Å3) | 3816.5 (13) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.20 |
Crystal size (mm) | 0.33 × 0.28 × 0.27 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.937, 0.949 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22793, 3345, 3118 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.096, 0.208, 1.28 |
No. of reflections | 3345 |
No. of parameters | 348 |
No. of restraints | 514 |
H-atom treatment | H-atom parameters constrained |
w = 1/[σ2(Fo2) + (0.P)2 + 23.9034P] where P = (Fo2 + 2Fc2)/3 | |
Δρmax, Δρmin (e Å−3) | 0.33, −0.37 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···S1A | 0.94 | 2.82 | 3.732 (3) | 163 |
O1—H1O1···O3A | 0.94 | 1.71 | 2.619 (9) | 163 |
O2—H1O2···N2Ai | 0.88 | 1.95 | 2.739 (6) | 150 |
C11A—H11A···O2ii | 0.93 | 2.40 | 3.329 (9) | 174 |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, y−1/2, −z+1/2. |
Acknowledgements
NEE and SGT thank the Malaysian Government and Universiti Sains Malaysia (USM) for the RU research grant 1001/PKIMIA/815067. NEE also thanks USM for a post-doctoral fellowship and the International University of Africa (Sudan) for providing study leave. HKF and CSY thank USM for the Research University Grant 1001/PFIZIK/811160.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
As part of our ongoing structural studies of benzimidazoles (Eltayeb et al., 2007a,b,c, 2009) we now describe in this paper the single-crystal X-ray diffraction study of title compound, (I), (Fig. 1). Furthermore, this paper describes for the first time a simple method for synthesis of benzimidazo[1,2-c]quinazoline derivatives using zinc chloride as a homogenous catalyst, herein, and thereafter to be called the "Taha-Teoh's method".
The benzimidazole fused ring system in (I) is disordered over two sets of sites with refined site occupancies of 0.750 (5) and 0.250 (5). The solvent molecule is also disordered over two orientations with refined site occupancies of 0.882 (4) and 0.118 (4). The conformation for pyrimidine ring is close to a half-chair conformation for major component whereas for minor component it is close to a boat conformation (Cremer & Pople, 1975). The dihydroxyphenyl ring is almost perpendicular to the mean plane of benzimidazole ring (N1A/C1A–C6A/N2A/C7A) with the dihedral angle of 87.3 (2)° whereas this angle is 88.3 (5)° for minor component. In the crystal structure, the molecules are linked into infinite one-dimensional chains along a axis by intermolecular O2—H1O2···N2A hydrogen bonds and the intermolecular C11A—H11A···O2 hydrogen bonds (Table 1) further linked these chains into planes parallel to ab plane (Fig. 3). The benzimidazole molecule and the solvent molecule is stabilized by the O1—H1O1···S1A and O1—H1O1···O3A interactions (Table 1).