organic compounds
(E,E)-1,2-Bis[3-methoxy-4-(prop-2-yn-1-yloxy)benzylidene]hydrazine
aDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: rosiyah@um.edu.my, edward.tiekink@gmail.com
The complete molecule in the title compound, C22H20N2O4, is generated by the application of an inversion centre. With the exception of the terminal acetylene groups [C—O—C—C = −78.02 (17)°], the remaining atoms constituting the molecule are essentially coplanar. The configuration around the C=N bond [1.282 (2) Å] is E. The formation of supramolecular chains mediated by C—H⋯O interactions, occurring between methylene H and methoxy O atoms, is the most notable feature of the crystal packing.
Related literature
For background to the study see: Xu et al. (1997); Zheng et al. (2005); Kundu et al. (2005). For additional analysis, see: Spek (2009).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811022410/hb5907sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811022410/hb5907Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811022410/hb5907Isup3.cml
Vanillinazine (2.0 g, 6.7 mmol) in dry acetone and anhydrous K2CO3 (1.84 g, 13.3 mmol) was stirred at room temperature for about 20 min. Then, an excess of propargyl bromide (1.74 g, 14.7 mmol) was added drop wise. The mixture was refluxed for 48 h. The solvent was evaporated under reduced pressure and the product extracted with 100 ml diethyl ether. The organic layer was washed with brine and dried over MgSO4. The yellow compound was recrystallized from ethyl acetate/methanol (1/1) solution to yield yellow needles of (I); yield 72% and M.pt. 460 K.
Carbon-bound H-atoms were placed in calculated positions (C—H 0.95 to 0.99 Å) and were included in the
in the riding model approximation with Uiso(H) = 1.2–1.5Ueq(C).Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C22H20N2O4 | F(000) = 396 |
Mr = 376.40 | Dx = 1.340 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 1658 reflections |
a = 4.4840 (3) Å | θ = 2.8–29.5° |
b = 14.4636 (8) Å | µ = 0.09 mm−1 |
c = 14.3939 (9) Å | T = 100 K |
β = 91.674 (4)° | Needle, yellow |
V = 933.11 (10) Å3 | 0.25 × 0.11 × 0.07 mm |
Z = 2 |
Bruker SMART APEX CCD diffractometer | 2138 independent reflections |
Radiation source: fine-focus sealed tube | 1625 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.069 |
ω scans | θmax = 27.5°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −5→5 |
Tmin = 0.368, Tmax = 0.746 | k = −18→18 |
8574 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.124 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0481P)2 + 0.2035P] where P = (Fo2 + 2Fc2)/3 |
2138 reflections | (Δ/σ)max < 0.001 |
128 parameters | Δρmax = 0.26 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C22H20N2O4 | V = 933.11 (10) Å3 |
Mr = 376.40 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 4.4840 (3) Å | µ = 0.09 mm−1 |
b = 14.4636 (8) Å | T = 100 K |
c = 14.3939 (9) Å | 0.25 × 0.11 × 0.07 mm |
β = 91.674 (4)° |
Bruker SMART APEX CCD diffractometer | 2138 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1625 reflections with I > 2σ(I) |
Tmin = 0.368, Tmax = 0.746 | Rint = 0.069 |
8574 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.124 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.26 e Å−3 |
2138 reflections | Δρmin = −0.25 e Å−3 |
128 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 1.2641 (2) | 0.54779 (7) | 0.43315 (7) | 0.0201 (3) | |
O2 | 1.3374 (2) | 0.41802 (7) | 0.31509 (8) | 0.0218 (3) | |
N1 | 0.5998 (3) | 0.49139 (8) | 0.03789 (9) | 0.0204 (3) | |
C1 | 0.5930 (3) | 0.55648 (10) | 0.09829 (11) | 0.0195 (4) | |
H1 | 0.4638 | 0.6075 | 0.0867 | 0.023* | |
C2 | 0.7742 (3) | 0.55572 (10) | 0.18375 (11) | 0.0187 (3) | |
C3 | 0.7351 (3) | 0.62536 (10) | 0.24843 (11) | 0.0201 (4) | |
H3 | 0.5955 | 0.6733 | 0.2351 | 0.024* | |
C4 | 0.8968 (3) | 0.62633 (10) | 0.33254 (11) | 0.0192 (3) | |
H4 | 0.8694 | 0.6750 | 0.3758 | 0.023* | |
C5 | 1.0972 (3) | 0.55612 (9) | 0.35270 (10) | 0.0170 (3) | |
C6 | 1.1383 (3) | 0.48469 (9) | 0.28727 (11) | 0.0178 (3) | |
C7 | 0.9810 (3) | 0.48486 (9) | 0.20414 (11) | 0.0182 (3) | |
H7 | 1.0117 | 0.4370 | 0.1602 | 0.022* | |
C8 | 1.2080 (4) | 0.61172 (10) | 0.50702 (11) | 0.0209 (4) | |
H8A | 1.2888 | 0.5857 | 0.5662 | 0.025* | |
H8B | 0.9898 | 0.6189 | 0.5128 | 0.025* | |
C9 | 1.3423 (4) | 0.70363 (10) | 0.49229 (11) | 0.0214 (4) | |
C10 | 1.4542 (4) | 0.77718 (11) | 0.48483 (12) | 0.0262 (4) | |
H10 | 1.5441 | 0.8363 | 0.4788 | 0.031* | |
C11 | 1.3762 (4) | 0.34187 (10) | 0.25333 (12) | 0.0255 (4) | |
H11A | 1.1830 | 0.3121 | 0.2405 | 0.038* | |
H11B | 1.5142 | 0.2971 | 0.2821 | 0.038* | |
H11C | 1.4578 | 0.3642 | 0.1950 | 0.038* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0245 (6) | 0.0180 (5) | 0.0174 (6) | 0.0022 (4) | −0.0053 (5) | −0.0022 (4) |
O2 | 0.0261 (6) | 0.0161 (5) | 0.0228 (6) | 0.0055 (4) | −0.0061 (5) | −0.0030 (4) |
N1 | 0.0202 (7) | 0.0225 (6) | 0.0182 (7) | −0.0017 (5) | −0.0047 (6) | 0.0031 (5) |
C1 | 0.0185 (8) | 0.0176 (7) | 0.0223 (8) | −0.0017 (6) | −0.0020 (7) | 0.0035 (6) |
C2 | 0.0180 (8) | 0.0171 (7) | 0.0209 (8) | −0.0036 (6) | −0.0014 (7) | 0.0025 (6) |
C3 | 0.0184 (8) | 0.0160 (7) | 0.0260 (9) | 0.0001 (6) | −0.0019 (7) | 0.0029 (6) |
C4 | 0.0221 (8) | 0.0150 (7) | 0.0207 (8) | −0.0009 (6) | 0.0004 (7) | −0.0012 (6) |
C5 | 0.0176 (8) | 0.0162 (7) | 0.0171 (8) | −0.0029 (6) | −0.0013 (6) | 0.0016 (5) |
C6 | 0.0172 (8) | 0.0132 (7) | 0.0230 (8) | −0.0006 (6) | −0.0007 (6) | 0.0023 (6) |
C7 | 0.0195 (8) | 0.0148 (7) | 0.0202 (8) | −0.0019 (6) | −0.0002 (6) | −0.0013 (5) |
C8 | 0.0259 (9) | 0.0211 (7) | 0.0154 (8) | 0.0006 (6) | −0.0024 (7) | −0.0026 (6) |
C9 | 0.0245 (9) | 0.0227 (8) | 0.0169 (8) | 0.0031 (6) | −0.0020 (7) | −0.0032 (6) |
C10 | 0.0325 (10) | 0.0215 (8) | 0.0244 (9) | 0.0001 (7) | −0.0031 (8) | −0.0031 (6) |
C11 | 0.0293 (9) | 0.0176 (7) | 0.0293 (9) | 0.0034 (6) | −0.0056 (8) | −0.0055 (6) |
O1—C5 | 1.3655 (17) | C4—H4 | 0.9500 |
O1—C8 | 1.4368 (18) | C5—C6 | 1.414 (2) |
O2—C6 | 1.3664 (16) | C6—C7 | 1.371 (2) |
O2—C11 | 1.4292 (18) | C7—H7 | 0.9500 |
N1—C1 | 1.282 (2) | C8—C9 | 1.477 (2) |
N1—N1i | 1.413 (2) | C8—H8A | 0.9900 |
C1—C2 | 1.454 (2) | C8—H8B | 0.9900 |
C1—H1 | 0.9500 | C9—C10 | 1.182 (2) |
C2—C3 | 1.386 (2) | C10—H10 | 0.9500 |
C2—C7 | 1.407 (2) | C11—H11A | 0.9800 |
C3—C4 | 1.393 (2) | C11—H11B | 0.9800 |
C3—H3 | 0.9500 | C11—H11C | 0.9800 |
C4—C5 | 1.381 (2) | ||
C5—O1—C8 | 117.87 (11) | O2—C6—C5 | 114.66 (13) |
C6—O2—C11 | 116.87 (11) | C7—C6—C5 | 120.43 (13) |
C1—N1—N1i | 111.53 (15) | C6—C7—C2 | 120.15 (14) |
N1—C1—C2 | 122.96 (14) | C6—C7—H7 | 119.9 |
N1—C1—H1 | 118.5 | C2—C7—H7 | 119.9 |
C2—C1—H1 | 118.5 | O1—C8—C9 | 113.08 (13) |
C3—C2—C7 | 118.98 (14) | O1—C8—H8A | 109.0 |
C3—C2—C1 | 118.95 (13) | C9—C8—H8A | 109.0 |
C7—C2—C1 | 122.03 (14) | O1—C8—H8B | 109.0 |
C2—C3—C4 | 121.22 (14) | C9—C8—H8B | 109.0 |
C2—C3—H3 | 119.4 | H8A—C8—H8B | 107.8 |
C4—C3—H3 | 119.4 | C10—C9—C8 | 176.86 (17) |
C5—C4—C3 | 119.61 (14) | C9—C10—H10 | 180.0 |
C5—C4—H4 | 120.2 | O2—C11—H11A | 109.5 |
C3—C4—H4 | 120.2 | O2—C11—H11B | 109.5 |
O1—C5—C4 | 125.46 (13) | H11A—C11—H11B | 109.5 |
O1—C5—C6 | 114.94 (12) | O2—C11—H11C | 109.5 |
C4—C5—C6 | 119.60 (13) | H11A—C11—H11C | 109.5 |
O2—C6—C7 | 124.90 (13) | H11B—C11—H11C | 109.5 |
N1i—N1—C1—C2 | 179.28 (15) | C11—O2—C6—C5 | 177.04 (14) |
N1—C1—C2—C3 | −174.95 (15) | O1—C5—C6—O2 | 0.4 (2) |
N1—C1—C2—C7 | 2.9 (2) | C4—C5—C6—O2 | −178.85 (13) |
C7—C2—C3—C4 | 0.2 (2) | O1—C5—C6—C7 | 179.38 (13) |
C1—C2—C3—C4 | 178.11 (14) | C4—C5—C6—C7 | 0.1 (2) |
C2—C3—C4—C5 | −0.9 (2) | O2—C6—C7—C2 | 178.03 (14) |
C8—O1—C5—C4 | 6.4 (2) | C5—C6—C7—C2 | −0.8 (2) |
C8—O1—C5—C6 | −172.80 (13) | C3—C2—C7—C6 | 0.7 (2) |
C3—C4—C5—O1 | −178.48 (15) | C1—C2—C7—C6 | −177.22 (15) |
C3—C4—C5—C6 | 0.7 (2) | C5—O1—C8—C9 | −78.02 (17) |
C11—O2—C6—C7 | −1.8 (2) | O1—C8—C9—C10 | −136 (3) |
Symmetry code: (i) −x+1, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8a···O2ii | 0.99 | 2.36 | 3.255 (2) | 150 |
Symmetry code: (ii) −x+3, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C22H20N2O4 |
Mr | 376.40 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 4.4840 (3), 14.4636 (8), 14.3939 (9) |
β (°) | 91.674 (4) |
V (Å3) | 933.11 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.25 × 0.11 × 0.07 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.368, 0.746 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8574, 2138, 1625 |
Rint | 0.069 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.124, 1.05 |
No. of reflections | 2138 |
No. of parameters | 128 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.26, −0.25 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8a···O2i | 0.99 | 2.36 | 3.255 (2) | 150 |
Symmetry code: (i) −x+3, −y+1, −z+1. |
Acknowledgements
The University of Malaya is thanked for support of this research through a research grant (No. FRGS FP001/2010 A) and for the maintenance of the crystallographic facility.
References
Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Kundu, N., Chatterjee, P. B., Chaudhury, M. & Tiekink, E. R. T. (2005). Acta Cryst. E61, m1583–m1585. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
Xu, Z., Thompson, L. K. & Miller, D. O. (1997). Inorg. Chem. 36, 3985–3995. CSD CrossRef CAS Web of Science Google Scholar
Zheng, P.-W., Wang, W. & Duan, X.-M. (2005). Acta Cryst. E61, o3020–o3021. CSD CrossRef IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Molecules combining an azine functionality and/or a diimine linkage have been investigated in terms of their crystallography and coordination chemistry (Xu et al., 1997; Zheng et al., 2005; Kundu et al., 2005). In this connection the title compound, (I), was studied.
The molecule of (I), Fig. 1, is centrosymmetric around the central azine [N1—N1i = 1.413 (2) Å] bond; symmetry operation i: 1 - x, 1 - y, -z. The configuration around the C1═N1 bond [1.282 (2) Å] is E. With the exception of the terminal acetylene group, the molecule is essentially planar as seen in the values of the N1—C1—C2—C7 and C11—O2—C6—C5 torsion angles of 2.9 (2) and 177.04 (14) °, respectively. By contrast, the torsion angle C5—O1—C8—C9 of -78.02 (17) ° indicates the acetylene group is almost perpendicular to the rest of the molecule.
The most prominent feature of the crystal packing is the presence of C—H···O interactions, occurring between methylene-H and the methoxy-O atoms, which serve to link molecules into supramolecular chains mediated by centrosymmetric 12-membered {···HCOC2O}2 synthons, Table 1 and Fig. 2. Chains pack in the ac plane and interdigitate along the b axis., Fig. 3. Each acetylene-H atom is orientated towards an imino-N atom, being separated by 2.77 Å, i.e. outside the standard criteria to be considered significant (Spek, 2009).