organic compounds
Benzyl N-(1-{N′-[(E)-2-chlorobenzylidene]hydrazinecarbonyl}-2-hydroxyethyl)carbamate
aFundação Oswaldo Cruz, Instituto de Tecnologia, em Fármacos – Farmanguinhos, R. Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, RJ, Brazil, bDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, cCHEMSOL, 1 Harcourt Road, Aberdeen AB15 5NY, Scotland, and dCentro de Desenvolvimento Tecnológico em Saúde (CDTS), Fundação Oswaldo Cruz (FIOCRUZ), Casa Amarela, Campus de Manguinhos, Av. Brasil 4365, 21040-900 Rio de Janeiro, RJ, Brazil
*Correspondence e-mail: edward.tiekink@gmail.com
The molecule of the title compound, C18H18ClN3O4, is twisted about the chiral C atom with the dihedral angle between the two amide residues being 87.8 (5)°, but, overall, it can be described as curved, with the benzene rings lying on the same side of the molecule [dihedral angle = 62.8 (4)°]. The conformation about the imine bond [1.294 (7) Å] is E. In the crystal, a two-dimensional array in the ab plane is mediated by O—H⋯O and N—H⋯O hydrogen bonds as well as C—H⋯Cl interactions. The layers stack along the c-axis direction, being connected by C—H⋯.π contacts.
Related literature
For background to the use of L-serine derivatives in anti-tumour therapy, see: Jiao et al. (2009); Yakura et al. (2007). For background to N-acylhydrazone derivatives from L-serine for anti-tumour testing, see: Pinheiro et al. (2010, 2011a,b); de Souza et al. (2010); Howie et al. (2011).
Experimental
Crystal data
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Data collection: COLLECT (Hooft, 1998); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811024895/hb5927sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811024895/hb5927Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811024895/hb5927Isup3.cml
To a stirred solution of methyl (2S)-2-[(benzyloxycarbonyl)amino]-3-hydroxypropanoate (0.3 g, 1.17 mmol), prepared from (2S)-2-amino-3-hydroxypropanoate hydrochloride and benzyl chloroformate (21 ml, 0.15 mol), in ethanol (10 ml) was added N2H4.H2O (80%, 5.5 mmol). The reaction mixture was stirred for 24 h at room temperature, rotary evaporated and the residue washed with cold ethanol (3 x 10 ml) to give benzyl (1S)-2-hydrazino-1-(hydroxymethyl)-2-oxoethylcarbamate in 78% yield, which was used as such for the next stage. To a stirred solution of (S)-PhCH2OCONHCH(CH2OH)CONHNH2 (1.0 mmol) in ethanol (10 ml) at room temperature was added 2-chlorobenzaldehyde (1.05 mmol). The reaction mixture was refluxed for 4 h, rotary evaporated and the residue purified by washing with cold ethanol (3 x 10 ml), affording the title compound, M.pt. 438 K, yield 73%. Yellow needles of (I) for the δ (p.p.m.): 11.79 (1H, s, NHN), 8.67 (1H, s, N═CH, (E)-diastereomer), 7.97 (1H, d, J= 6.4, H5), 7.55–7.20 (9H, m, Ph, H2, H3, H4 and NHCH), 5.05 (2H, s, CH2Ph), 4.94 (1H, m, OH), 4.15 (1H, m, CH), 3.80–3.60 (2H, m, CH2OH). 13C NMR (125 MHz, DMSO-d6) δ (p.p.m.): 172.1, 156.5, 143.5, 137.5, 133.6, 132.0, 131.8, 130.4, 128.8, 128.3, 128.2, 128.1, 127.3, 66.1, 61.9, 57.0. IR (cm-1, KBr): 3202 ν(O—H), 1682 ν(COCH and COO). MS/ESI: [M—H]: 374.8.
were recrystallized from EtOH. 1H NMR (500 MHz, DMSO-d6)The C-bound H atoms were geometrically placed (C–H = 0.95–1.00 Å) and refined as riding with Uiso(H) = 1.2–1.5Ueq(C). The O– and N-bound H atoms were located from a difference map and refined with the distance restraints O–H = 0.84 ± 0.01 and N–H = 0.88±0.01 Å, and with Uiso(H) = zUeq(carrier atom); z = 1.5 for O and z = 1.2 for N.
Data collection: COLLECT (Hooft, 1998); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); data reduction: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. The molecular structure of (I) showing displacement ellipsoids at the 50% probability level. | |
Fig. 2. A view of the supramolecular array in the ab plane in (I) with the O—H···O and N—H···O hydrogen bonding shown as orange and blue dashed lines, respectively. Hydrogen atoms not participating in the hydrogen bonding scheme are omitted for reasons of clariy. | |
Fig. 3. A view in projection down the a axis of the stacking of 2-D supramolecular arrays in the ab plane in (I), and with the O—H···O and N—H···O hydrogen bonding shown as orange and blue dashed lines, respectively. |
C18H18ClN3O4 | Z = 1 |
Mr = 375.80 | F(000) = 196 |
Triclinic, P1 | Dx = 1.424 Mg m−3 |
Hall symbol: P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 4.6804 (4) Å | Cell parameters from 13950 reflections |
b = 5.6037 (7) Å | θ = 2.9–27.5° |
c = 16.946 (2) Å | µ = 0.25 mm−1 |
α = 95.669 (6)° | T = 120 K |
β = 95.886 (7)° | Needle, yellow |
γ = 94.467 (6)° | 0.12 × 0.03 × 0.02 mm |
V = 438.20 (8) Å3 |
Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer | 3438 independent reflections |
Radiation source: Bruker-Nonius FR591 rotating anode | 2520 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.062 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.7° |
ϕ and ω scans | h = −6→6 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | k = −7→7 |
Tmin = 0.682, Tmax = 1.000 | l = −21→21 |
6351 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.070 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.196 | w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
3438 reflections | Δρmax = 0.38 e Å−3 |
244 parameters | Δρmin = −0.39 e Å−3 |
6 restraints | Absolute structure: Flack (1983), 1476 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.15 (12) |
C18H18ClN3O4 | γ = 94.467 (6)° |
Mr = 375.80 | V = 438.20 (8) Å3 |
Triclinic, P1 | Z = 1 |
a = 4.6804 (4) Å | Mo Kα radiation |
b = 5.6037 (7) Å | µ = 0.25 mm−1 |
c = 16.946 (2) Å | T = 120 K |
α = 95.669 (6)° | 0.12 × 0.03 × 0.02 mm |
β = 95.886 (7)° |
Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer | 3438 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | 2520 reflections with I > 2σ(I) |
Tmin = 0.682, Tmax = 1.000 | Rint = 0.062 |
6351 measured reflections |
R[F2 > 2σ(F2)] = 0.070 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.196 | Δρmax = 0.38 e Å−3 |
S = 1.10 | Δρmin = −0.39 e Å−3 |
3438 reflections | Absolute structure: Flack (1983), 1476 Friedel pairs |
244 parameters | Absolute structure parameter: 0.15 (12) |
6 restraints |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl | 1.3824 (2) | 1.3694 (2) | 0.28152 (10) | 0.0301 (4) | |
O1 | 0.5726 (7) | 0.6300 (8) | 0.4667 (3) | 0.0298 (10) | |
O2 | 1.2666 (8) | 0.1671 (7) | 0.5712 (3) | 0.0270 (10) | |
H2O | 1.181 (14) | 0.079 (11) | 0.600 (4) | 0.041* | |
O3 | 0.9314 (8) | 0.8947 (7) | 0.6569 (2) | 0.0273 (10) | |
O4 | 0.5835 (8) | 0.6630 (7) | 0.7041 (2) | 0.0265 (9) | |
N1 | 0.8863 (9) | 0.7934 (8) | 0.3539 (3) | 0.0198 (10) | |
N2 | 1.0058 (10) | 0.6984 (9) | 0.4208 (3) | 0.0221 (10) | |
H2N | 1.195 (3) | 0.713 (11) | 0.429 (4) | 0.026* | |
N3 | 0.8117 (10) | 0.4981 (8) | 0.6072 (3) | 0.0230 (11) | |
H3N | 0.683 (10) | 0.377 (7) | 0.610 (4) | 0.028* | |
C1 | 0.9669 (12) | 0.9974 (11) | 0.2410 (4) | 0.0233 (13) | |
C2 | 1.1001 (11) | 1.2101 (10) | 0.2184 (4) | 0.0248 (13) | |
C3 | 0.9976 (13) | 1.3025 (11) | 0.1494 (4) | 0.0287 (14) | |
H3 | 1.0844 | 1.4498 | 0.1359 | 0.034* | |
C4 | 0.7682 (13) | 1.1799 (12) | 0.1000 (4) | 0.0315 (15) | |
H4 | 0.6996 | 1.2419 | 0.0521 | 0.038* | |
C5 | 0.6399 (13) | 0.9705 (12) | 0.1198 (4) | 0.0308 (15) | |
H5 | 0.4842 | 0.8866 | 0.0851 | 0.037* | |
C6 | 0.7337 (12) | 0.8786 (11) | 0.1900 (3) | 0.0228 (12) | |
H6 | 0.6394 | 0.7344 | 0.2035 | 0.027* | |
C7 | 1.0712 (12) | 0.9037 (10) | 0.3152 (3) | 0.0223 (12) | |
H7 | 1.2704 | 0.9233 | 0.3345 | 0.027* | |
C8 | 0.8341 (11) | 0.6206 (10) | 0.4736 (3) | 0.0212 (12) | |
C9 | 0.9896 (11) | 0.5108 (10) | 0.5429 (3) | 0.0207 (12) | |
H9 | 1.1710 | 0.6148 | 0.5629 | 0.025* | |
C10 | 1.0689 (11) | 0.2567 (11) | 0.5148 (3) | 0.0218 (12) | |
H10A | 0.8910 | 0.1454 | 0.5048 | 0.026* | |
H10B | 1.1540 | 0.2613 | 0.4638 | 0.026* | |
C11 | 0.7900 (11) | 0.7019 (10) | 0.6551 (3) | 0.0190 (11) | |
C12 | 0.5549 (12) | 0.8631 (11) | 0.7614 (3) | 0.0236 (13) | |
H12A | 0.4789 | 0.9962 | 0.7337 | 0.028* | |
H12B | 0.7465 | 0.9217 | 0.7900 | 0.028* | |
C13 | 0.3567 (11) | 0.7911 (11) | 0.8197 (4) | 0.0244 (13) | |
C14 | 0.2025 (12) | 0.5668 (11) | 0.8127 (4) | 0.0286 (14) | |
H14 | 0.2219 | 0.4510 | 0.7691 | 0.034* | |
C15 | 0.0196 (14) | 0.5110 (13) | 0.8693 (5) | 0.0373 (16) | |
H15 | −0.0830 | 0.3563 | 0.8648 | 0.045* | |
C16 | −0.0126 (13) | 0.6770 (13) | 0.9310 (4) | 0.0363 (16) | |
H16 | −0.1406 | 0.6383 | 0.9688 | 0.044* | |
C17 | 0.1389 (13) | 0.9020 (13) | 0.9394 (4) | 0.0336 (15) | |
H17 | 0.1162 | 1.0166 | 0.9830 | 0.040* | |
C18 | 0.3217 (12) | 0.9584 (11) | 0.8845 (4) | 0.0275 (13) | |
H18 | 0.4261 | 1.1127 | 0.8903 | 0.033* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl | 0.0278 (7) | 0.0258 (8) | 0.0367 (9) | 0.0003 (6) | 0.0059 (6) | 0.0024 (6) |
O1 | 0.017 (2) | 0.048 (3) | 0.029 (2) | 0.0077 (19) | 0.0078 (17) | 0.016 (2) |
O2 | 0.025 (2) | 0.025 (2) | 0.034 (3) | 0.0034 (18) | 0.0036 (18) | 0.0113 (19) |
O3 | 0.025 (2) | 0.028 (2) | 0.028 (2) | −0.0022 (18) | 0.0054 (17) | −0.0004 (18) |
O4 | 0.024 (2) | 0.031 (2) | 0.023 (2) | −0.0005 (18) | 0.0069 (17) | −0.0022 (17) |
N1 | 0.020 (2) | 0.020 (2) | 0.018 (2) | 0.0046 (19) | −0.0017 (18) | 0.001 (2) |
N2 | 0.017 (2) | 0.027 (3) | 0.022 (3) | 0.0034 (19) | 0.0024 (19) | 0.005 (2) |
N3 | 0.019 (2) | 0.023 (3) | 0.028 (3) | −0.0027 (19) | 0.008 (2) | 0.004 (2) |
C1 | 0.022 (3) | 0.029 (3) | 0.022 (3) | 0.008 (2) | 0.009 (2) | 0.002 (3) |
C2 | 0.022 (3) | 0.028 (3) | 0.025 (3) | 0.008 (2) | 0.008 (2) | −0.007 (3) |
C3 | 0.034 (3) | 0.027 (3) | 0.031 (3) | 0.007 (3) | 0.016 (3) | 0.012 (3) |
C4 | 0.036 (3) | 0.044 (4) | 0.017 (3) | 0.009 (3) | 0.006 (3) | 0.010 (3) |
C5 | 0.028 (3) | 0.040 (4) | 0.025 (3) | 0.005 (3) | 0.004 (3) | 0.004 (3) |
C6 | 0.022 (3) | 0.025 (3) | 0.023 (3) | 0.007 (2) | 0.001 (2) | 0.009 (2) |
C7 | 0.020 (3) | 0.020 (3) | 0.025 (3) | 0.001 (2) | 0.002 (2) | 0.001 (2) |
C8 | 0.012 (2) | 0.023 (3) | 0.027 (3) | −0.001 (2) | 0.004 (2) | 0.000 (2) |
C9 | 0.015 (2) | 0.026 (3) | 0.020 (3) | −0.001 (2) | 0.001 (2) | 0.002 (2) |
C10 | 0.019 (3) | 0.028 (3) | 0.018 (3) | 0.002 (2) | 0.002 (2) | 0.000 (2) |
C11 | 0.012 (2) | 0.027 (3) | 0.019 (3) | 0.003 (2) | 0.004 (2) | 0.004 (2) |
C12 | 0.021 (3) | 0.029 (3) | 0.022 (3) | 0.005 (2) | 0.005 (2) | 0.001 (2) |
C13 | 0.014 (3) | 0.035 (3) | 0.025 (3) | 0.012 (2) | 0.003 (2) | 0.001 (3) |
C14 | 0.024 (3) | 0.035 (4) | 0.030 (3) | 0.012 (3) | 0.008 (3) | 0.000 (3) |
C15 | 0.027 (3) | 0.035 (4) | 0.053 (4) | 0.003 (3) | 0.013 (3) | 0.014 (3) |
C16 | 0.031 (3) | 0.053 (4) | 0.032 (4) | 0.019 (3) | 0.014 (3) | 0.015 (3) |
C17 | 0.027 (3) | 0.047 (4) | 0.026 (3) | 0.011 (3) | 0.003 (3) | −0.003 (3) |
C18 | 0.021 (3) | 0.032 (3) | 0.028 (3) | 0.001 (3) | 0.003 (2) | 0.000 (3) |
Cl—C2 | 1.739 (6) | C5—H5 | 0.9500 |
O1—C8 | 1.223 (6) | C6—H6 | 0.9500 |
O2—C10 | 1.417 (7) | C7—H7 | 0.9500 |
O2—H2O | 0.842 (10) | C8—C9 | 1.525 (8) |
O3—C11 | 1.218 (7) | C9—C10 | 1.541 (8) |
O4—C11 | 1.357 (6) | C9—H9 | 1.0000 |
O4—C12 | 1.433 (6) | C10—H10A | 0.9900 |
N1—C7 | 1.294 (7) | C10—H10B | 0.9900 |
N1—N2 | 1.385 (6) | C12—C13 | 1.485 (8) |
N2—C8 | 1.343 (7) | C12—H12A | 0.9900 |
N2—H2N | 0.877 (10) | C12—H12B | 0.9900 |
N3—C11 | 1.351 (7) | C13—C14 | 1.388 (9) |
N3—C9 | 1.441 (7) | C13—C18 | 1.403 (8) |
N3—H3N | 0.878 (10) | C14—C15 | 1.391 (9) |
C1—C6 | 1.400 (8) | C14—H14 | 0.9500 |
C1—C2 | 1.407 (8) | C15—C16 | 1.357 (10) |
C1—C7 | 1.462 (8) | C15—H15 | 0.9500 |
C2—C3 | 1.381 (8) | C16—C17 | 1.385 (10) |
C3—C4 | 1.383 (9) | C16—H16 | 0.9500 |
C3—H3 | 0.9500 | C17—C18 | 1.371 (8) |
C4—C5 | 1.364 (9) | C17—H17 | 0.9500 |
C4—H4 | 0.9500 | C18—H18 | 0.9500 |
C5—C6 | 1.386 (9) | ||
C10—O2—H2O | 111 (5) | N3—C9—H9 | 108.7 |
C11—O4—C12 | 114.7 (4) | C8—C9—H9 | 108.7 |
C7—N1—N2 | 114.6 (4) | C10—C9—H9 | 108.7 |
C8—N2—N1 | 119.6 (4) | O2—C10—C9 | 112.6 (4) |
C8—N2—H2N | 124 (4) | O2—C10—H10A | 109.1 |
N1—N2—H2N | 115 (4) | C9—C10—H10A | 109.1 |
C11—N3—C9 | 118.3 (5) | O2—C10—H10B | 109.1 |
C11—N3—H3N | 117 (4) | C9—C10—H10B | 109.1 |
C9—N3—H3N | 123 (4) | H10A—C10—H10B | 107.8 |
C6—C1—C2 | 117.8 (5) | O3—C11—N3 | 127.3 (5) |
C6—C1—C7 | 121.4 (5) | O3—C11—O4 | 122.9 (5) |
C2—C1—C7 | 120.7 (5) | N3—C11—O4 | 109.8 (5) |
C3—C2—C1 | 120.9 (5) | O4—C12—C13 | 110.4 (5) |
C3—C2—Cl | 119.5 (5) | O4—C12—H12A | 109.6 |
C1—C2—Cl | 119.4 (5) | C13—C12—H12A | 109.6 |
C2—C3—C4 | 119.8 (6) | O4—C12—H12B | 109.6 |
C2—C3—H3 | 120.1 | C13—C12—H12B | 109.6 |
C4—C3—H3 | 120.1 | H12A—C12—H12B | 108.1 |
C5—C4—C3 | 120.3 (6) | C14—C13—C18 | 118.4 (5) |
C5—C4—H4 | 119.9 | C14—C13—C12 | 123.1 (5) |
C3—C4—H4 | 119.9 | C18—C13—C12 | 118.5 (5) |
C4—C5—C6 | 120.8 (6) | C13—C14—C15 | 120.2 (6) |
C4—C5—H5 | 119.6 | C13—C14—H14 | 119.9 |
C6—C5—H5 | 119.6 | C15—C14—H14 | 119.9 |
C5—C6—C1 | 120.3 (6) | C16—C15—C14 | 120.2 (7) |
C5—C6—H6 | 119.9 | C16—C15—H15 | 119.9 |
C1—C6—H6 | 119.9 | C14—C15—H15 | 119.9 |
N1—C7—C1 | 118.5 (5) | C15—C16—C17 | 120.8 (6) |
N1—C7—H7 | 120.7 | C15—C16—H16 | 119.6 |
C1—C7—H7 | 120.7 | C17—C16—H16 | 119.6 |
O1—C8—N2 | 123.7 (5) | C18—C17—C16 | 119.6 (6) |
O1—C8—C9 | 121.7 (5) | C18—C17—H17 | 120.2 |
N2—C8—C9 | 114.6 (4) | C16—C17—H17 | 120.2 |
N3—C9—C8 | 110.6 (4) | C17—C18—C13 | 120.8 (6) |
N3—C9—C10 | 109.7 (5) | C17—C18—H18 | 119.6 |
C8—C9—C10 | 110.2 (5) | C13—C18—H18 | 119.6 |
C7—N1—N2—C8 | 167.6 (5) | N2—C8—C9—N3 | 163.1 (5) |
C6—C1—C2—C3 | 2.1 (8) | O1—C8—C9—C10 | 102.9 (6) |
C7—C1—C2—C3 | −178.3 (5) | N2—C8—C9—C10 | −75.4 (6) |
C6—C1—C2—Cl | 177.8 (4) | N3—C9—C10—O2 | −70.8 (5) |
C7—C1—C2—Cl | −2.6 (7) | C8—C9—C10—O2 | 167.1 (4) |
C1—C2—C3—C4 | −2.6 (8) | C9—N3—C11—O3 | −9.6 (8) |
Cl—C2—C3—C4 | −178.3 (5) | C9—N3—C11—O4 | 171.2 (5) |
C2—C3—C4—C5 | 1.1 (9) | C12—O4—C11—O3 | −3.2 (7) |
C3—C4—C5—C6 | 0.9 (10) | C12—O4—C11—N3 | 176.0 (4) |
C4—C5—C6—C1 | −1.4 (9) | C11—O4—C12—C13 | −171.5 (5) |
C2—C1—C6—C5 | −0.1 (8) | O4—C12—C13—C14 | −6.0 (7) |
C7—C1—C6—C5 | −179.7 (5) | O4—C12—C13—C18 | 174.6 (5) |
N2—N1—C7—C1 | 176.4 (5) | C18—C13—C14—C15 | −0.4 (8) |
C6—C1—C7—N1 | −33.8 (8) | C12—C13—C14—C15 | −179.8 (6) |
C2—C1—C7—N1 | 146.7 (5) | C13—C14—C15—C16 | 1.0 (10) |
N1—N2—C8—O1 | −0.6 (8) | C14—C15—C16—C17 | −1.1 (10) |
N1—N2—C8—C9 | 177.6 (5) | C15—C16—C17—C18 | 0.5 (10) |
C11—N3—C9—C8 | −77.4 (6) | C16—C17—C18—C13 | 0.2 (9) |
C11—N3—C9—C10 | 160.8 (5) | C14—C13—C18—C17 | −0.2 (8) |
O1—C8—C9—N3 | −18.6 (7) | C12—C13—C18—C17 | 179.3 (5) |
Cg1 is the centroid of the C13–C18 benzene ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2o···O3i | 0.84 (8) | 1.89 (9) | 2.728 (7) | 171 (9) |
N3—H3n···O2ii | 0.88 (6) | 2.20 (6) | 3.006 (8) | 153 (7) |
N2—H2n···O1iii | 0.88 (3) | 1.93 (4) | 2.758 (8) | 158 (7) |
C6—H6···Cliv | 0.95 | 2.81 | 3.734 (8) | 166 |
C12—H12b···Cg1iii | 0.99 | 2.69 | 3.474 (8) | 137 |
Symmetry codes: (i) x, y−1, z; (ii) x−1, y, z; (iii) x+1, y, z; (iv) x−1, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C18H18ClN3O4 |
Mr | 375.80 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 120 |
a, b, c (Å) | 4.6804 (4), 5.6037 (7), 16.946 (2) |
α, β, γ (°) | 95.669 (6), 95.886 (7), 94.467 (6) |
V (Å3) | 438.20 (8) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.25 |
Crystal size (mm) | 0.12 × 0.03 × 0.02 |
Data collection | |
Diffractometer | Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2007) |
Tmin, Tmax | 0.682, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6351, 3438, 2520 |
Rint | 0.062 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.070, 0.196, 1.10 |
No. of reflections | 3438 |
No. of parameters | 244 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.38, −0.39 |
Absolute structure | Flack (1983), 1476 Friedel pairs |
Absolute structure parameter | 0.15 (12) |
Computer programs: , DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
Cg1 is the centroid of the C13–C18 benzene ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2o···O3i | 0.84 (8) | 1.89 (9) | 2.728 (7) | 171 (9) |
N3—H3n···O2ii | 0.88 (6) | 2.20 (6) | 3.006 (8) | 153 (7) |
N2—H2n···O1iii | 0.88 (3) | 1.93 (4) | 2.758 (8) | 158 (7) |
C6—H6···Cliv | 0.95 | 2.81 | 3.734 (8) | 166 |
C12—H12b···Cg1iii | 0.99 | 2.69 | 3.474 (8) | 137 |
Symmetry codes: (i) x, y−1, z; (ii) x−1, y, z; (iii) x+1, y, z; (iv) x−1, y−1, z. |
Footnotes
‡Additional correspondence author, e-mail: j.wardell@abdn.ac.uk.
Acknowledgements
The use of the EPSRC X-ray crystallographic service at the University of Southampton, England, and the valuable assistance of the staff there is gratefully acknowledged. JLW acknowledges support from CAPES (Brazil).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Interest in the development of N-acylhydrazone derivatives from L-serine for use in anti-tumour testing (Pinheiro et al., 2010; de Souza et al., 2010; Pinheiro et al., 2011a: Pinheiro et al., 2011b; Howie et al., 2011) arises from the known anti-tumour activity of L-serine derivatives (Jiao et al., 2009; Yakura et al., 2007), and motivated the study of the title compound, (I).
Overall, the molecule of (I), Fig. 1, is curved with the benzene rings lying on the same side of the molecule. Nevertheless, the molecule is twisted about the chiral centre with the dihedral angle formed between the two amide residues, i.e. N2,C8,O1 and N3,C11,O3,O4, being 87.8 (5) °. The benzyl group is approximately co-planar with the carboxylate group with the dihedral angle between the carbamate group (N3,C11,O3,O4) and benzene ring (C13–C18) being 9.9 (2) °. By contrast, the benzene ring connected to the hydrazine group is twisted out of the plane through the latter as seen in the value of the C2—C1—C7—N1 torsion angle of 146.7 (5) °. The dihedral angle formed between the terminal benzene rings is 62.8 (4) °. The conformation about the N1═C7 imine bond [1.294 (7) Å] is E.
The crystal packing is dominated by hydrogen bonding interactions, Table 1. The hydroxyl group forms a O—H···O hydrogen bond with the carbamate-carbonyl group, and simultaneously accepts a hydrogen bond from carbamate-amine. The hydrazine-amine forms a N—H···O hydrogen bond with the carbonyl adjacent to the hydrazine group. The result of the hydrogen bonds is the formation of a two-dimensional array in the ab plane, Fig. 2. Additional stabilization to the layer is afforded by C—H···Cl interactions, Table 1. Layers stack along the c direction and are connected via C—H···π interactions, Table 1 and Fig. 3.