metal-organic compounds
Propane-1,2-diaminium bis(pyridine-2,6-dicarboxylato-κ3O2,N,O6)cuprate(II) tetrahydrate
aFaculty of Chemistry, Tarbiat Moallem University, 15614, Tehran, Iran, bDepartment of Chemistry, Shahid Beheshti University, G. C., Evin, Tehran, Iran, and cDepartment of Chemistry, Ferdowsi University of Mashhad, Mashhad 917751436, Iran
*Correspondence e-mail: haghabozorg@yahoo.com
In the title compound, (C3H12N2)[Cu(C7H3NO4)2]·4H2O, the CuII atom is six-coordinated in a distorted octahedral geometry by two tridentate pyridine-2,6-dicarboxylate (pydc) ligands. In the crystal, intermolecular O—H⋯O, N—H⋯O and weak C—H⋯O hydrogen bonds, as well as π–π stacking interactions between the pyridine rings of the pydc ligands [centroid–centroid distance = 3.4714 (14) Å] are present. C=O⋯π interactions between the carbonyl groups and pyridine rings [O⋯centroid distances = 3.150 (2) and 3.2233 (19) Å] are also observed.
Related literature
For background to proton-transfer compounds, see: Aghabozorg et al. (2008d). For related structures, see: Aghabozorg et al. (2008a,b,c).
Experimental
Crystal data
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Data collection: X-AREA (Stoe & Cie, 2005); cell X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536811024378/hy2413sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811024378/hy2413Isup2.hkl
By mixing Cu(OAc)2.H2O (1 mmol), pyridine-2,6-dicarboxylic acid (2 mmol) and propane-1,2-diamine (1 mmol) in 20 ml water, a blue solution was obtained. Blue crystals of the title compound were obtained by allowing the mixture to stand at room temperature for a week.
H atoms of the protonated N atoms and water molecules were found in a difference Fourier map and their coordinates were refined and Uiso values were fixed, in which H4C, H9A, H9B, H11A, H12A and H12B were refined with distance restraints of N—H/O—H = 0.84 (2), 0.84 (2), 0.82 (2), 0.82 (2), 0.79 (2), 0.81 (2) Å. H atoms on C atoms were positioned geometrically and refined as riding atoms, with C—H = 0.93 (aromatic), 0.96 (CH3), 0.97 (CH2) and 0.98 (CH)Å and with Uiso(H) = 1.2Ueq(C).
Data collection: X-AREA (Stoe & Cie, 2005); cell
X-AREA (Stoe & Cie, 2005); data reduction: X-AREA (Stoe & Cie, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. Molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level. | |
Fig. 2. The packing diagram of the title compound, showing intermolecular N—H···O, O—H···O and weak C—H···O hydrogen bonds (blue dashed lines). | |
Fig. 3. The packing diagram of the title compound, showing intermolecular π–π interactions [dashed lines, centroid–centroid distance = 3.4714 (14) Å]. Water molecules and cations have been omitted for clarity. | |
Fig. 4. The packing diagram of the title compound, showing C═O···π interactions (dashed lines) between the pyridine rings and the carbonyl groups [O···centroid distances = 3.150 (2) and 3.2233 (19) Å]. Water molecules and cations have been omitted for clarity. |
(C3H12N2)[Cu(C7H3NO4)2]·4H2O | F(000) = 1124 |
Mr = 541.97 | Dx = 1.647 Mg m−3 |
Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2n | Cell parameters from 5040 reflections |
a = 20.919 (4) Å | θ = 2.5–29.1° |
b = 8.2015 (16) Å | µ = 1.07 mm−1 |
c = 12.739 (3) Å | T = 120 K |
V = 2185.6 (7) Å3 | Block, blue |
Z = 4 | 0.50 × 0.40 × 0.35 mm |
Stoe IPDS-2 diffractometer | 5040 independent reflections |
Radiation source: fine-focus sealed tube | 4803 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
ω scans | θmax = 29.1°, θmin = 2.5° |
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) | h = −24→28 |
Tmin = 0.602, Tmax = 0.684 | k = −9→11 |
9693 measured reflections | l = −14→17 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.028 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.075 | w = 1/[σ2(Fo2) + (0.0422P)2 + 0.9494P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.003 |
5040 reflections | Δρmax = 0.43 e Å−3 |
350 parameters | Δρmin = −0.52 e Å−3 |
7 restraints | Absolute structure: Flack (1983), 1969 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.001 (10) |
(C3H12N2)[Cu(C7H3NO4)2]·4H2O | V = 2185.6 (7) Å3 |
Mr = 541.97 | Z = 4 |
Orthorhombic, Pna21 | Mo Kα radiation |
a = 20.919 (4) Å | µ = 1.07 mm−1 |
b = 8.2015 (16) Å | T = 120 K |
c = 12.739 (3) Å | 0.50 × 0.40 × 0.35 mm |
Stoe IPDS-2 diffractometer | 5040 independent reflections |
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) | 4803 reflections with I > 2σ(I) |
Tmin = 0.602, Tmax = 0.684 | Rint = 0.029 |
9693 measured reflections |
R[F2 > 2σ(F2)] = 0.028 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.075 | Δρmax = 0.43 e Å−3 |
S = 1.09 | Δρmin = −0.52 e Å−3 |
5040 reflections | Absolute structure: Flack (1983), 1969 Friedel pairs |
350 parameters | Absolute structure parameter: −0.001 (10) |
7 restraints |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.730311 (10) | 0.99084 (3) | 0.53964 (3) | 0.00819 (6) | |
O1 | 0.65641 (8) | 0.7928 (2) | 0.57097 (13) | 0.0156 (3) | |
O2 | 0.60721 (7) | 0.67722 (19) | 0.70796 (13) | 0.0133 (3) | |
O3 | 0.81368 (7) | 1.15817 (19) | 0.58997 (13) | 0.0121 (3) | |
O4 | 0.86763 (7) | 1.22026 (19) | 0.73603 (13) | 0.0126 (3) | |
O5 | 0.65879 (7) | 1.16886 (17) | 0.53346 (15) | 0.0134 (3) | |
O6 | 0.59524 (8) | 1.2936 (2) | 0.41726 (14) | 0.0151 (3) | |
O7 | 0.80165 (7) | 0.83190 (19) | 0.48615 (13) | 0.0109 (3) | |
O8 | 0.85015 (8) | 0.7555 (2) | 0.33667 (13) | 0.0129 (3) | |
O9 | 0.56195 (10) | 0.7606 (4) | 0.42357 (17) | 0.0426 (7) | |
O10 | 0.44108 (9) | 0.8652 (2) | 0.46858 (15) | 0.0162 (3) | |
O11 | 0.42267 (8) | 0.5941 (2) | 0.59618 (14) | 0.0171 (3) | |
O12 | 0.46500 (9) | 0.3499 (2) | 0.38944 (16) | 0.0216 (4) | |
N1 | 0.73387 (8) | 0.9634 (2) | 0.69332 (17) | 0.0079 (3) | |
N2 | 0.72136 (9) | 1.0156 (2) | 0.38998 (18) | 0.0077 (4) | |
N3 | 0.54048 (9) | 0.4390 (2) | 0.59580 (16) | 0.0124 (3) | |
N4 | 0.44690 (9) | 0.1638 (2) | 0.57235 (16) | 0.0116 (4) | |
C1 | 0.64760 (10) | 0.7709 (3) | 0.66754 (17) | 0.0096 (4) | |
C2 | 0.69142 (10) | 0.8648 (2) | 0.74089 (18) | 0.0088 (4) | |
C3 | 0.69152 (10) | 0.8437 (2) | 0.84916 (18) | 0.0094 (4) | |
H3 | 0.6616 | 0.7763 | 0.8813 | 0.011* | |
C4 | 0.73706 (10) | 0.9252 (3) | 0.90831 (18) | 0.0112 (4) | |
H4 | 0.7382 | 0.9122 | 0.9808 | 0.013* | |
C5 | 0.78101 (11) | 1.0265 (3) | 0.85857 (19) | 0.0099 (4) | |
H5 | 0.8121 | 1.0813 | 0.8971 | 0.012* | |
C6 | 0.77765 (10) | 1.0443 (2) | 0.75039 (18) | 0.0079 (4) | |
C7 | 0.82336 (9) | 1.1500 (2) | 0.68727 (18) | 0.0089 (4) | |
C8 | 0.63972 (10) | 1.1994 (3) | 0.44162 (19) | 0.0109 (4) | |
C9 | 0.67591 (10) | 1.1157 (2) | 0.35435 (18) | 0.0093 (4) | |
C10 | 0.66963 (11) | 1.1435 (2) | 0.24765 (18) | 0.0110 (4) | |
H10 | 0.6379 | 1.2123 | 0.2221 | 0.013* | |
C11 | 0.71196 (11) | 1.0660 (3) | 0.17933 (17) | 0.0118 (4) | |
H11 | 0.7089 | 1.0839 | 0.1074 | 0.014* | |
C12 | 0.75891 (11) | 0.9616 (3) | 0.21866 (18) | 0.0097 (4) | |
H12 | 0.7875 | 0.9093 | 0.1739 | 0.012* | |
C13 | 0.76179 (10) | 0.9379 (3) | 0.32665 (17) | 0.0090 (4) | |
C14 | 0.80893 (10) | 0.8320 (2) | 0.38701 (19) | 0.0097 (4) | |
C15 | 0.53174 (11) | 0.3070 (3) | 0.67483 (19) | 0.0135 (4) | |
H15B | 0.5001 | 0.3411 | 0.7259 | 0.016* | |
H15A | 0.5717 | 0.2899 | 0.7117 | 0.016* | |
C16 | 0.51050 (10) | 0.1466 (2) | 0.62550 (18) | 0.0114 (4) | |
H16 | 0.5423 | 0.1141 | 0.5730 | 0.014* | |
C17 | 0.50603 (13) | 0.0132 (3) | 0.7083 (2) | 0.0188 (5) | |
H17B | 0.4754 | 0.0440 | 0.7607 | 0.023* | |
H17C | 0.5471 | −0.0017 | 0.7406 | 0.023* | |
H17A | 0.4928 | −0.0869 | 0.6758 | 0.023* | |
H3A | 0.5597 (15) | 0.404 (4) | 0.538 (3) | 0.023* | |
H4A | 0.4377 (15) | 0.074 (4) | 0.540 (3) | 0.023* | |
H9A | 0.5887 (14) | 0.790 (4) | 0.468 (2) | 0.023* | |
H10A | 0.4750 (18) | 0.846 (4) | 0.446 (3) | 0.023* | |
H11A | 0.3889 (11) | 0.562 (4) | 0.572 (3) | 0.023* | |
H12A | 0.4484 (15) | 0.340 (4) | 0.3341 (18) | 0.023* | |
H3B | 0.4992 (17) | 0.477 (4) | 0.577 (3) | 0.023* | |
H4B | 0.4502 (15) | 0.233 (4) | 0.525 (3) | 0.023* | |
H9B | 0.5786 (16) | 0.726 (4) | 0.3696 (19) | 0.023* | |
H10B | 0.4158 (17) | 0.830 (4) | 0.421 (3) | 0.023* | |
H11B | 0.4249 (16) | 0.680 (4) | 0.564 (3) | 0.023* | |
H12B | 0.4996 (11) | 0.316 (4) | 0.372 (3) | 0.023* | |
H3C | 0.5641 (17) | 0.520 (4) | 0.622 (3) | 0.023* | |
H4C | 0.4190 (13) | 0.200 (4) | 0.613 (2) | 0.023* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.00687 (10) | 0.01264 (10) | 0.00506 (10) | 0.00041 (8) | −0.00005 (12) | 0.00104 (10) |
O1 | 0.0129 (7) | 0.0252 (8) | 0.0088 (8) | −0.0069 (6) | −0.0014 (6) | −0.0002 (6) |
O2 | 0.0105 (7) | 0.0159 (7) | 0.0134 (8) | −0.0052 (5) | 0.0017 (6) | −0.0014 (6) |
O3 | 0.0133 (7) | 0.0152 (7) | 0.0079 (8) | −0.0031 (5) | −0.0008 (6) | 0.0008 (6) |
O4 | 0.0088 (7) | 0.0169 (7) | 0.0122 (8) | −0.0040 (6) | −0.0002 (6) | −0.0021 (6) |
O5 | 0.0113 (6) | 0.0217 (7) | 0.0072 (7) | 0.0036 (5) | 0.0009 (7) | 0.0002 (7) |
O6 | 0.0115 (7) | 0.0202 (8) | 0.0135 (8) | 0.0066 (6) | −0.0001 (6) | 0.0019 (6) |
O7 | 0.0096 (7) | 0.0150 (7) | 0.0081 (8) | 0.0023 (5) | 0.0003 (6) | 0.0009 (5) |
O8 | 0.0090 (7) | 0.0178 (7) | 0.0120 (8) | 0.0024 (6) | 0.0027 (6) | 0.0000 (6) |
O9 | 0.0142 (9) | 0.100 (2) | 0.0136 (10) | 0.0126 (11) | −0.0035 (8) | −0.0176 (12) |
O10 | 0.0133 (8) | 0.0181 (7) | 0.0172 (9) | −0.0011 (6) | −0.0005 (7) | −0.0052 (6) |
O11 | 0.0118 (7) | 0.0214 (8) | 0.0180 (9) | 0.0024 (6) | −0.0011 (7) | 0.0026 (7) |
O12 | 0.0146 (8) | 0.0367 (10) | 0.0135 (9) | 0.0005 (7) | −0.0046 (7) | 0.0009 (7) |
N1 | 0.0060 (8) | 0.0104 (8) | 0.0073 (9) | 0.0005 (6) | −0.0002 (7) | 0.0003 (8) |
N2 | 0.0049 (7) | 0.0120 (8) | 0.0063 (9) | −0.0024 (6) | −0.0006 (7) | 0.0007 (7) |
N3 | 0.0096 (8) | 0.0148 (8) | 0.0128 (9) | −0.0006 (6) | −0.0004 (7) | −0.0032 (7) |
N4 | 0.0073 (7) | 0.0147 (8) | 0.0128 (9) | 0.0011 (6) | −0.0003 (7) | −0.0017 (7) |
C1 | 0.0069 (8) | 0.0116 (9) | 0.0104 (10) | 0.0006 (7) | −0.0001 (8) | 0.0003 (7) |
C2 | 0.0062 (8) | 0.0097 (8) | 0.0104 (10) | 0.0007 (7) | −0.0001 (8) | −0.0002 (7) |
C3 | 0.0093 (9) | 0.0114 (9) | 0.0074 (9) | 0.0006 (7) | 0.0025 (8) | 0.0023 (7) |
C4 | 0.0146 (10) | 0.0142 (9) | 0.0050 (9) | 0.0024 (8) | 0.0014 (8) | −0.0005 (7) |
C5 | 0.0112 (9) | 0.0101 (8) | 0.0085 (11) | 0.0025 (7) | −0.0005 (8) | −0.0015 (7) |
C6 | 0.0073 (8) | 0.0098 (8) | 0.0066 (10) | 0.0007 (7) | −0.0006 (7) | −0.0004 (7) |
C7 | 0.0064 (8) | 0.0090 (8) | 0.0113 (10) | 0.0007 (6) | 0.0007 (8) | −0.0001 (7) |
C8 | 0.0088 (9) | 0.0132 (8) | 0.0107 (10) | 0.0000 (7) | 0.0022 (8) | −0.0002 (7) |
C9 | 0.0076 (9) | 0.0117 (9) | 0.0085 (9) | −0.0009 (7) | −0.0007 (8) | 0.0006 (7) |
C10 | 0.0125 (9) | 0.0099 (8) | 0.0105 (10) | −0.0009 (7) | 0.0002 (8) | 0.0009 (7) |
C11 | 0.0156 (10) | 0.0131 (9) | 0.0066 (10) | −0.0028 (8) | −0.0009 (8) | −0.0004 (7) |
C12 | 0.0116 (9) | 0.0109 (8) | 0.0065 (10) | −0.0032 (8) | 0.0019 (8) | −0.0014 (7) |
C13 | 0.0077 (9) | 0.0097 (9) | 0.0095 (11) | −0.0012 (7) | −0.0009 (8) | 0.0021 (7) |
C14 | 0.0107 (9) | 0.0079 (8) | 0.0105 (10) | −0.0032 (7) | −0.0005 (8) | 0.0004 (7) |
C15 | 0.0117 (9) | 0.0175 (9) | 0.0112 (10) | −0.0023 (8) | −0.0013 (8) | −0.0018 (8) |
C16 | 0.0091 (9) | 0.0144 (9) | 0.0108 (10) | 0.0000 (7) | −0.0008 (8) | −0.0015 (7) |
C17 | 0.0220 (11) | 0.0188 (10) | 0.0156 (13) | 0.0035 (8) | −0.0001 (10) | 0.0023 (9) |
Cu1—N2 | 1.926 (2) | N4—C16 | 1.499 (3) |
Cu1—N1 | 1.972 (2) | N4—H4A | 0.86 (3) |
Cu1—O5 | 2.0920 (14) | N4—H4B | 0.83 (4) |
Cu1—O7 | 2.0953 (16) | N4—H4C | 0.84 (2) |
Cu1—O1 | 2.2775 (17) | C1—C2 | 1.519 (3) |
Cu1—O3 | 2.3100 (16) | C2—C3 | 1.390 (3) |
O1—C1 | 1.257 (3) | C3—C4 | 1.386 (3) |
O2—C1 | 1.253 (3) | C3—H3 | 0.9300 |
O3—C7 | 1.258 (3) | C4—C5 | 1.392 (3) |
O4—C7 | 1.255 (3) | C4—H4 | 0.9300 |
O5—C8 | 1.261 (3) | C5—C6 | 1.387 (3) |
O6—C8 | 1.248 (3) | C5—H5 | 0.9300 |
O7—C14 | 1.272 (3) | C6—C7 | 1.521 (3) |
O8—C14 | 1.245 (3) | C8—C9 | 1.510 (3) |
O9—H9A | 0.84 (2) | C9—C10 | 1.384 (3) |
O9—H9B | 0.82 (2) | C10—C11 | 1.395 (3) |
O10—H10A | 0.78 (4) | C10—H10 | 0.9300 |
O10—H10B | 0.85 (4) | C11—C12 | 1.396 (3) |
O11—H11A | 0.82 (2) | C11—H11 | 0.9300 |
O11—H11B | 0.82 (4) | C12—C13 | 1.390 (3) |
O12—H12A | 0.79 (2) | C12—H12 | 0.9300 |
O12—H12B | 0.81 (2) | C13—C14 | 1.523 (3) |
N1—C6 | 1.344 (3) | C15—C16 | 1.524 (3) |
N1—C2 | 1.345 (3) | C15—H15B | 0.9700 |
N2—C13 | 1.331 (3) | C15—H15A | 0.9700 |
N2—C9 | 1.336 (3) | C16—C17 | 1.523 (3) |
N3—C15 | 1.490 (3) | C16—H16 | 0.9800 |
N3—H3A | 0.89 (4) | C17—H17B | 0.9600 |
N3—H3B | 0.95 (4) | C17—H17C | 0.9600 |
N3—H3C | 0.90 (4) | C17—H17A | 0.9600 |
N2—Cu1—N1 | 176.55 (8) | C3—C4—H4 | 120.2 |
N2—Cu1—O5 | 79.62 (8) | C5—C4—H4 | 120.2 |
N1—Cu1—O5 | 98.27 (8) | C6—C5—C4 | 118.8 (2) |
N2—Cu1—O7 | 79.21 (8) | C6—C5—H5 | 120.6 |
N1—Cu1—O7 | 103.00 (7) | C4—C5—H5 | 120.6 |
O5—Cu1—O7 | 158.64 (7) | N1—C6—C5 | 121.3 (2) |
N2—Cu1—O1 | 100.52 (7) | N1—C6—C7 | 115.1 (2) |
N1—Cu1—O1 | 76.72 (7) | C5—C6—C7 | 123.6 (2) |
O5—Cu1—O1 | 91.08 (6) | O4—C7—O3 | 125.6 (2) |
O7—Cu1—O1 | 95.55 (6) | O4—C7—C6 | 117.6 (2) |
N2—Cu1—O3 | 106.59 (7) | O3—C7—C6 | 116.74 (18) |
N1—Cu1—O3 | 76.33 (7) | O6—C8—O5 | 126.1 (2) |
O5—Cu1—O3 | 97.80 (6) | O6—C8—C9 | 118.2 (2) |
O7—Cu1—O3 | 85.54 (6) | O5—C8—C9 | 115.73 (19) |
O1—Cu1—O3 | 152.56 (7) | N2—C9—C10 | 120.2 (2) |
C1—O1—Cu1 | 111.91 (14) | N2—C9—C8 | 112.7 (2) |
C7—O3—Cu1 | 111.32 (13) | C10—C9—C8 | 126.90 (19) |
C8—O5—Cu1 | 113.56 (15) | C9—C10—C11 | 118.5 (2) |
C14—O7—Cu1 | 114.06 (14) | C9—C10—H10 | 120.7 |
H9A—O9—H9B | 113 (3) | C11—C10—H10 | 120.7 |
H10A—O10—H10B | 104 (3) | C10—C11—C12 | 120.1 (2) |
H11A—O11—H11B | 98 (3) | C10—C11—H11 | 119.9 |
H12A—O12—H12B | 97 (4) | C12—C11—H11 | 119.9 |
C6—N1—C2 | 120.2 (2) | C13—C12—C11 | 118.1 (2) |
C6—N1—Cu1 | 120.43 (15) | C13—C12—H12 | 120.9 |
C2—N1—Cu1 | 119.39 (16) | C11—C12—H12 | 120.9 |
C13—N2—C9 | 122.7 (2) | N2—C13—C12 | 120.4 (2) |
C13—N2—Cu1 | 119.20 (17) | N2—C13—C14 | 112.2 (2) |
C9—N2—Cu1 | 118.04 (17) | C12—C13—C14 | 127.39 (19) |
C15—N3—H3A | 113 (2) | O8—C14—O7 | 126.5 (2) |
C15—N3—H3B | 107 (2) | O8—C14—C13 | 118.4 (2) |
H3A—N3—H3B | 108 (3) | O7—C14—C13 | 115.11 (19) |
C15—N3—H3C | 111 (2) | N3—C15—C16 | 112.60 (19) |
H3A—N3—H3C | 108 (3) | N3—C15—H15B | 109.1 |
H3B—N3—H3C | 111 (3) | C16—C15—H15B | 109.1 |
C16—N4—H4A | 109 (2) | N3—C15—H15A | 109.1 |
C16—N4—H4B | 109 (2) | C16—C15—H15A | 109.1 |
H4A—N4—H4B | 105 (3) | H15B—C15—H15A | 107.8 |
C16—N4—H4C | 112 (2) | N4—C16—C17 | 109.01 (18) |
H4A—N4—H4C | 116 (3) | N4—C16—C15 | 111.34 (17) |
H4B—N4—H4C | 106 (3) | C17—C16—C15 | 110.6 (2) |
O2—C1—O1 | 126.1 (2) | N4—C16—H16 | 108.6 |
O2—C1—C2 | 117.73 (19) | C17—C16—H16 | 108.6 |
O1—C1—C2 | 116.18 (19) | C15—C16—H16 | 108.6 |
N1—C2—C3 | 121.4 (2) | C16—C17—H17B | 109.5 |
N1—C2—C1 | 115.23 (19) | C16—C17—H17C | 109.5 |
C3—C2—C1 | 123.26 (19) | H17B—C17—H17C | 109.5 |
C4—C3—C2 | 118.7 (2) | C16—C17—H17A | 109.5 |
C4—C3—H3 | 120.6 | H17B—C17—H17A | 109.5 |
C2—C3—H3 | 120.6 | H17C—C17—H17A | 109.5 |
C3—C4—C5 | 119.6 (2) | ||
N2—Cu1—O1—C1 | −171.17 (16) | O1—C1—C2—C3 | −174.4 (2) |
N1—Cu1—O1—C1 | 6.72 (15) | N1—C2—C3—C4 | −0.8 (3) |
O5—Cu1—O1—C1 | −91.53 (16) | C1—C2—C3—C4 | 174.61 (18) |
O7—Cu1—O1—C1 | 108.80 (15) | C2—C3—C4—C5 | 0.5 (3) |
O3—Cu1—O1—C1 | 17.8 (2) | C3—C4—C5—C6 | 0.5 (3) |
N2—Cu1—O3—C7 | −179.84 (14) | C2—N1—C6—C5 | 1.1 (3) |
N1—Cu1—O3—C7 | 2.05 (14) | Cu1—N1—C6—C5 | −179.91 (16) |
O5—Cu1—O3—C7 | 98.72 (14) | C2—N1—C6—C7 | 179.27 (18) |
O7—Cu1—O3—C7 | −102.50 (14) | Cu1—N1—C6—C7 | −1.7 (3) |
O1—Cu1—O3—C7 | −9.0 (2) | C4—C5—C6—N1 | −1.3 (3) |
N2—Cu1—O5—C8 | 5.37 (15) | C4—C5—C6—C7 | −179.37 (18) |
N1—Cu1—O5—C8 | −171.87 (15) | Cu1—O3—C7—O4 | 175.85 (16) |
O7—Cu1—O5—C8 | 13.2 (3) | Cu1—O3—C7—C6 | −3.5 (2) |
O1—Cu1—O5—C8 | −95.13 (15) | N1—C6—C7—O4 | −175.73 (19) |
O3—Cu1—O5—C8 | 110.91 (15) | C5—C6—C7—O4 | 2.4 (3) |
N2—Cu1—O7—C14 | 4.09 (14) | N1—C6—C7—O3 | 3.6 (3) |
N1—Cu1—O7—C14 | −178.60 (14) | C5—C6—C7—O3 | −178.2 (2) |
O5—Cu1—O7—C14 | −3.7 (3) | Cu1—O5—C8—O6 | 175.81 (18) |
O1—Cu1—O7—C14 | 103.77 (14) | Cu1—O5—C8—C9 | −5.7 (2) |
O3—Cu1—O7—C14 | −103.75 (15) | C13—N2—C9—C10 | −0.5 (3) |
O5—Cu1—N1—C6 | −96.10 (17) | Cu1—N2—C9—C10 | 176.89 (15) |
O7—Cu1—N1—C6 | 82.02 (18) | C13—N2—C9—C8 | −175.35 (18) |
O1—Cu1—N1—C6 | 174.75 (19) | Cu1—N2—C9—C8 | 2.1 (2) |
O3—Cu1—N1—C6 | −0.02 (16) | O6—C8—C9—N2 | −178.67 (19) |
O5—Cu1—N1—C2 | 82.93 (17) | O5—C8—C9—N2 | 2.7 (3) |
O7—Cu1—N1—C2 | −98.95 (17) | O6—C8—C9—C10 | 6.9 (3) |
O1—Cu1—N1—C2 | −6.22 (16) | O5—C8—C9—C10 | −171.7 (2) |
O3—Cu1—N1—C2 | 179.00 (18) | N2—C9—C10—C11 | −0.5 (3) |
O5—Cu1—N2—C13 | 173.65 (16) | C8—C9—C10—C11 | 173.5 (2) |
O7—Cu1—N2—C13 | −3.47 (15) | C9—C10—C11—C12 | 0.7 (3) |
O1—Cu1—N2—C13 | −97.18 (16) | C10—C11—C12—C13 | 0.1 (3) |
O3—Cu1—N2—C13 | 78.52 (16) | C9—N2—C13—C12 | 1.4 (3) |
O5—Cu1—N2—C9 | −3.87 (15) | Cu1—N2—C13—C12 | −176.00 (16) |
O7—Cu1—N2—C9 | 179.02 (16) | C9—N2—C13—C14 | 179.81 (18) |
O1—Cu1—N2—C9 | 85.30 (16) | Cu1—N2—C13—C14 | 2.4 (2) |
O3—Cu1—N2—C9 | −99.00 (16) | C11—C12—C13—N2 | −1.2 (3) |
Cu1—O1—C1—O2 | 175.48 (17) | C11—C12—C13—C14 | −179.30 (19) |
Cu1—O1—C1—C2 | −6.0 (2) | Cu1—O7—C14—O8 | 175.91 (17) |
C6—N1—C2—C3 | 0.0 (3) | Cu1—O7—C14—C13 | −4.0 (2) |
Cu1—N1—C2—C3 | −179.01 (15) | N2—C13—C14—O8 | −178.59 (18) |
C6—N1—C2—C1 | −175.74 (18) | C12—C13—C14—O8 | −0.3 (3) |
Cu1—N1—C2—C1 | 5.2 (2) | N2—C13—C14—O7 | 1.3 (3) |
O2—C1—C2—N1 | 179.95 (19) | C12—C13—C14—O7 | 179.6 (2) |
O1—C1—C2—N1 | 1.3 (3) | N3—C15—C16—N4 | −61.9 (2) |
O2—C1—C2—C3 | 4.3 (3) | N3—C15—C16—C17 | 176.67 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10···O11i | 0.93 | 2.59 | 3.476 (3) | 160 |
C11—H11···O7ii | 0.93 | 2.56 | 3.301 (3) | 137 |
C15—H15A···O8iii | 0.97 | 2.30 | 3.245 (3) | 165 |
C16—H16···O5iv | 0.98 | 2.53 | 3.321 (3) | 138 |
N3—H3A···O6iv | 0.89 (4) | 1.93 (4) | 2.812 (3) | 170 (3) |
N3—H3B···O11 | 0.95 (4) | 1.88 (4) | 2.773 (3) | 155 (3) |
N3—H3C···O2 | 0.90 (4) | 1.91 (4) | 2.794 (2) | 167 (4) |
N4—H4A···O10iv | 0.86 (3) | 1.94 (3) | 2.786 (3) | 165 (3) |
N4—H4B···O12 | 0.83 (4) | 2.00 (4) | 2.811 (3) | 165 (3) |
N4—H4C···O4v | 0.84 (2) | 2.01 (2) | 2.829 (3) | 167 (3) |
O9—H9A···O1 | 0.84 (2) | 1.93 (2) | 2.739 (3) | 163 (3) |
O9—H9B···O4vi | 0.82 (2) | 2.04 (2) | 2.826 (3) | 160 (3) |
O10—H10A···O9 | 0.78 (4) | 1.97 (4) | 2.731 (3) | 164 (4) |
O10—H10B···O8v | 0.85 (4) | 1.88 (4) | 2.724 (3) | 170 (3) |
O11—H11A···O3v | 0.82 (2) | 2.41 (3) | 3.080 (2) | 140 (3) |
O11—H11A···O7v | 0.82 (2) | 2.30 (3) | 2.957 (2) | 138 (3) |
O11—H11B···O10 | 0.82 (4) | 1.98 (4) | 2.781 (3) | 169 (3) |
O12—H12A···O2vii | 0.79 (2) | 1.99 (2) | 2.770 (3) | 170 (3) |
O12—H12B···O6iv | 0.81 (2) | 2.09 (3) | 2.786 (2) | 144 (3) |
Symmetry codes: (i) −x+1, −y+2, z−1/2; (ii) −x+3/2, y+1/2, z−1/2; (iii) −x+3/2, y−1/2, z+1/2; (iv) x, y−1, z; (v) x−1/2, −y+3/2, z; (vi) −x+3/2, y−1/2, z−1/2; (vii) −x+1, −y+1, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | (C3H12N2)[Cu(C7H3NO4)2]·4H2O |
Mr | 541.97 |
Crystal system, space group | Orthorhombic, Pna21 |
Temperature (K) | 120 |
a, b, c (Å) | 20.919 (4), 8.2015 (16), 12.739 (3) |
V (Å3) | 2185.6 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.07 |
Crystal size (mm) | 0.50 × 0.40 × 0.35 |
Data collection | |
Diffractometer | Stoe IPDS2 diffractometer |
Absorption correction | Numerical (X-SHAPE and X-RED32; Stoe & Cie, 2005) |
Tmin, Tmax | 0.602, 0.684 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9693, 5040, 4803 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.685 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.028, 0.075, 1.09 |
No. of reflections | 5040 |
No. of parameters | 350 |
No. of restraints | 7 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.43, −0.52 |
Absolute structure | Flack (1983), 1969 Friedel pairs |
Absolute structure parameter | −0.001 (10) |
Computer programs: X-AREA (Stoe & Cie, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10···O11i | 0.93 | 2.59 | 3.476 (3) | 160 |
C11—H11···O7ii | 0.93 | 2.56 | 3.301 (3) | 137 |
C15—H15A···O8iii | 0.97 | 2.30 | 3.245 (3) | 165 |
C16—H16···O5iv | 0.98 | 2.53 | 3.321 (3) | 138 |
N3—H3A···O6iv | 0.89 (4) | 1.93 (4) | 2.812 (3) | 170 (3) |
N3—H3B···O11 | 0.95 (4) | 1.88 (4) | 2.773 (3) | 155 (3) |
N3—H3C···O2 | 0.90 (4) | 1.91 (4) | 2.794 (2) | 167 (4) |
N4—H4A···O10iv | 0.86 (3) | 1.94 (3) | 2.786 (3) | 165 (3) |
N4—H4B···O12 | 0.83 (4) | 2.00 (4) | 2.811 (3) | 165 (3) |
N4—H4C···O4v | 0.84 (2) | 2.01 (2) | 2.829 (3) | 167 (3) |
O9—H9A···O1 | 0.84 (2) | 1.93 (2) | 2.739 (3) | 163 (3) |
O9—H9B···O4vi | 0.82 (2) | 2.04 (2) | 2.826 (3) | 160 (3) |
O10—H10A···O9 | 0.78 (4) | 1.97 (4) | 2.731 (3) | 164 (4) |
O10—H10B···O8v | 0.85 (4) | 1.88 (4) | 2.724 (3) | 170 (3) |
O11—H11A···O3v | 0.82 (2) | 2.41 (3) | 3.080 (2) | 140 (3) |
O11—H11A···O7v | 0.82 (2) | 2.30 (3) | 2.957 (2) | 138 (3) |
O11—H11B···O10 | 0.82 (4) | 1.98 (4) | 2.781 (3) | 169 (3) |
O12—H12A···O2vii | 0.79 (2) | 1.989 (19) | 2.770 (3) | 170 (3) |
O12—H12B···O6iv | 0.81 (2) | 2.09 (3) | 2.786 (2) | 144 (3) |
Symmetry codes: (i) −x+1, −y+2, z−1/2; (ii) −x+3/2, y+1/2, z−1/2; (iii) −x+3/2, y−1/2, z+1/2; (iv) x, y−1, z; (v) x−1/2, −y+3/2, z; (vi) −x+3/2, y−1/2, z−1/2; (vii) −x+1, −y+1, z−1/2. |
Acknowledgements
We are grateful to Tarbiat Moallem University for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Our group has previously reported some proton-transfer systems (Aghabozorg et al., 2008d), using pyridine-2,6-dicarboxylic acid (pydcH2), propane-1,2-diamine (p-1,2-da) and propane-1,3-diamine (p-1,3-da), which formed the proton-transfer compounds (p-1,2-daH2)(pydcH)2.2H2O (Aghabozorg et al., 2008c), (p-1,2-daH2)[Ni(pydc)2].4H2O (Aghabozorg et al., 2008b), (p-1,3-daH2)[Cd(pydc)2].3.5H2O, (p-1,3-daH2)[Cu(pydc)2].4H2O and (p-1,3-daH2)[Co(pydc)2].4H2O (Aghabozorg et al., 2008a).
We describe here the crystal structure of the title compound (Fig. 1). In the complex anion, the CuII ion is six-coordinated by two (pydc)2- ligands in a distorted octahedral geometry. In the crystal, there are N—H···O, O—H···O and weak C—H···O intermolecular hydrogen bonds (Table 1, Fig. 2). There are also π–π stacking interactions between the pyridine rings of the pydc ligands [centroid–centroid distance = 3.4714 (14) Å], as shown in Fig. 3. In addition, there are C═O···π interactions (Fig. 4) between the carbonyl groups and pyridine rings [O···centroid distances = 3.150 (2) and 3.2233 (19) Å].