organic compounds
Ethyl 6-(4-fluorophenyl)-4-hydroxy-2-oxo-4-trifluoromethyl-1,3-diazinane-5-carboxylate monohydrate
aCollege of Chemistry and Chemical Engineering, Xuchang University, Xuchang, Henan Province 461000, People's Republic of China, and bDepartment of Chemistry, Zhengzhou University, Zhengzhou Henan Province, 450052, People's Republic of China
*Correspondence e-mail: actaeli@gmail.com
The 14H14F4N2O4·H2O, contains two crystallographically independent organic molecules and two water molecules. The two 1,3-diazinane rings adopt a half-chair conformation and the dihedral angles between their mean planes and those of the benzene rings are 75.65 (4)° and 49.41 (3)° in the two molecules. The is stabilized by intermolecular O—H⋯O and N—H⋯O hydrogen bonds.
of the title compound, CRelated literature
For the bioactivity of dihydropyrimidines, see: Brier et al. (2004); Cochran et al. (2005); Moran et al. (2007); Zorkun et al. (2006). For the bioactivity of organofluorine compounds, see: Hermann et al. (2003); Ulrich (2004). For a related structure, see: Song et al. (2010).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2009); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811021866/jh2293sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811021866/jh2293Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811021866/jh2293Isup3.cml
The title compound was synthesized refluxing for 3 h a stirred solution of 4-fluorobenzaldehyde (2.50 g, 20 mmol), ethyl ethyl 4,4,4-trifluoroacetoacetate (4.42 g, 24 mmol) and urea (1.80 g, 30 mmol) in 20 ml of anhydrous ethanol. The reaction was catalyzed by sulfamic acid (0.6 g). The solvent was evaporated in vacuo and the residue was washed with water. The title compound was recrystallized from 50% aqueous ethanol and single crystals of the title compound were obtained by slow evaporation of mother liquor.
Hydrogen atoms involved in hydrogen-bonding inetractions were located by difference methods and their positional and isotropic displacement parameters were refined. Other H atoms were placed in calculated positions, with C—H(aromatic) = 0.95 Å and C—H(aliphatic) = 0.98 Å, 0.99 Å or 1.00 Å, and treated as riding, with Uiso(H) = 1.2Ueq(C).
Data collection: CrystalClear (Rigaku, 2009); cell
CrystalClear (Rigaku, 2009); data reduction: CrystalClear (Rigaku, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Molecular configuration and atom numbering scheme for (I), with displacement ellipsoids drawn at the 30% probability level. |
C14H14F4N2O4·H2O | Z = 4 |
Mr = 368.29 | F(000) = 760 |
Triclinic, P1 | Dx = 1.527 Mg m−3 |
a = 10.0196 (9) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 12.1718 (12) Å | Cell parameters from 5664 reflections |
c = 14.3037 (14) Å | θ = 1.5–27.9° |
α = 98.463 (7)° | µ = 0.14 mm−1 |
β = 103.642 (8)° | T = 113 K |
γ = 104.400 (9)° | Prism, colorless |
V = 1602.2 (3) Å3 | 0.20 × 0.18 × 0.14 mm |
Rigaku Saturn CCD area detector diffractometer | 7612 independent reflections |
Radiation source: rotating anode | 4575 reflections with I > 2σ(I) |
Multilayer monochromator | Rint = 0.041 |
Detector resolution: 14.63 pixels mm-1 | θmax = 27.9°, θmin = 1.5° |
ω and ϕ scans | h = −13→13 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2009) | k = −16→14 |
Tmin = 0.972, Tmax = 0.980 | l = −18→18 |
20692 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.031 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.072 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.87 | w = 1/[σ2(Fo2) + (0.0267P)2] where P = (Fo2 + 2Fc2)/3 |
7612 reflections | (Δ/σ)max = 0.001 |
493 parameters | Δρmax = 0.35 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C14H14F4N2O4·H2O | γ = 104.400 (9)° |
Mr = 368.29 | V = 1602.2 (3) Å3 |
Triclinic, P1 | Z = 4 |
a = 10.0196 (9) Å | Mo Kα radiation |
b = 12.1718 (12) Å | µ = 0.14 mm−1 |
c = 14.3037 (14) Å | T = 113 K |
α = 98.463 (7)° | 0.20 × 0.18 × 0.14 mm |
β = 103.642 (8)° |
Rigaku Saturn CCD area detector diffractometer | 7612 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2009) | 4575 reflections with I > 2σ(I) |
Tmin = 0.972, Tmax = 0.980 | Rint = 0.041 |
20692 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | 0 restraints |
wR(F2) = 0.072 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.87 | Δρmax = 0.35 e Å−3 |
7612 reflections | Δρmin = −0.19 e Å−3 |
493 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F1 | 0.21735 (8) | 0.30976 (7) | 0.47711 (6) | 0.0278 (2) | |
F2 | 0.44636 (9) | 0.33996 (7) | 0.51405 (6) | 0.0313 (2) | |
F3 | 0.30625 (9) | 0.19817 (7) | 0.39477 (6) | 0.0288 (2) | |
F4 | 0.49822 (9) | 0.38466 (7) | 1.13399 (6) | 0.0355 (2) | |
F5 | −0.11880 (8) | 0.62729 (6) | 0.98946 (6) | 0.02501 (19) | |
F6 | 0.01160 (8) | 0.72196 (7) | 1.13589 (6) | 0.02698 (19) | |
F7 | 0.09316 (8) | 0.61081 (6) | 1.04636 (6) | 0.02592 (19) | |
F8 | 0.28213 (9) | 0.78195 (7) | 0.49828 (6) | 0.0356 (2) | |
O1 | 0.57514 (10) | 0.02599 (8) | 0.62488 (6) | 0.0205 (2) | |
O2 | 0.16764 (10) | 0.09767 (8) | 0.52602 (7) | 0.0212 (2) | |
H2 | 0.1553 (16) | 0.0484 (13) | 0.4701 (12) | 0.041 (5)* | |
O3 | 0.10031 (10) | 0.25206 (8) | 0.67210 (7) | 0.0236 (2) | |
O4 | 0.27857 (9) | 0.41634 (7) | 0.69581 (7) | 0.0218 (2) | |
O5 | 0.44555 (9) | 0.97089 (7) | 1.10542 (6) | 0.0191 (2) | |
O6 | −0.00739 (10) | 0.86354 (8) | 0.99826 (7) | 0.0189 (2) | |
H6 | 0.0185 (16) | 0.9111 (13) | 1.0575 (12) | 0.039 (5)* | |
O7 | −0.13754 (10) | 0.74745 (8) | 0.79365 (7) | 0.0226 (2) | |
O8 | −0.07876 (9) | 0.58103 (7) | 0.79232 (6) | 0.0209 (2) | |
N1 | 0.41809 (12) | 0.11768 (10) | 0.55571 (8) | 0.0196 (3) | |
N2 | 0.45729 (12) | 0.10551 (10) | 0.71961 (8) | 0.0191 (3) | |
N3 | 0.22350 (12) | 0.84435 (9) | 1.06802 (8) | 0.0173 (2) | |
N4 | 0.31320 (12) | 0.91025 (10) | 0.94499 (8) | 0.0184 (3) | |
C1 | 0.48618 (14) | 0.07974 (11) | 0.63376 (9) | 0.0175 (3) | |
C2 | 0.30765 (14) | 0.17404 (11) | 0.55694 (9) | 0.0172 (3) | |
C3 | 0.32023 (15) | 0.25634 (12) | 0.48542 (10) | 0.0211 (3) | |
C4 | 0.33613 (14) | 0.24284 (11) | 0.66264 (9) | 0.0163 (3) | |
H4 | 0.4306 | 0.3044 | 0.6806 | 0.020* | |
C5 | 0.22216 (14) | 0.30121 (11) | 0.67569 (9) | 0.0177 (3) | |
C6 | 0.18167 (15) | 0.48463 (12) | 0.71134 (10) | 0.0256 (3) | |
H6A | 0.2381 | 0.5624 | 0.7530 | 0.031* | |
H6B | 0.1156 | 0.4457 | 0.7462 | 0.031* | |
C7 | 0.09575 (15) | 0.49743 (12) | 0.61357 (10) | 0.0292 (4) | |
H7A | 0.1613 | 0.5278 | 0.5760 | 0.044* | |
H7B | 0.0402 | 0.5513 | 0.6251 | 0.044* | |
H7C | 0.0301 | 0.4214 | 0.5762 | 0.044* | |
C8 | 0.34703 (14) | 0.16004 (11) | 0.73406 (9) | 0.0167 (3) | |
H8 | 0.2527 | 0.0986 | 0.7177 | 0.020* | |
C9 | 0.38729 (14) | 0.22261 (11) | 0.84106 (9) | 0.0169 (3) | |
C10 | 0.30035 (14) | 0.18702 (11) | 0.90023 (10) | 0.0198 (3) | |
H10 | 0.2135 | 0.1254 | 0.8723 | 0.024* | |
C11 | 0.33834 (15) | 0.23995 (12) | 0.99955 (10) | 0.0232 (3) | |
H11 | 0.2798 | 0.2143 | 1.0402 | 0.028* | |
C12 | 0.46237 (15) | 0.32993 (12) | 1.03707 (10) | 0.0235 (3) | |
C13 | 0.55181 (15) | 0.36883 (12) | 0.98175 (10) | 0.0259 (3) | |
H13 | 0.6374 | 0.4316 | 1.0101 | 0.031* | |
C14 | 0.51319 (15) | 0.31362 (12) | 0.88317 (10) | 0.0231 (3) | |
H14 | 0.5740 | 0.3385 | 0.8437 | 0.028* | |
C15 | 0.33267 (14) | 0.91286 (11) | 1.04127 (9) | 0.0164 (3) | |
C16 | 0.08059 (13) | 0.79019 (11) | 1.00238 (9) | 0.0157 (3) | |
C17 | 0.01571 (14) | 0.68607 (11) | 1.04325 (10) | 0.0196 (3) | |
C18 | 0.09283 (13) | 0.75018 (11) | 0.89773 (9) | 0.0157 (3) | |
H18 | 0.1481 | 0.6921 | 0.8994 | 0.019* | |
C19 | −0.05367 (14) | 0.69559 (11) | 0.82313 (9) | 0.0179 (3) | |
C20 | −0.21972 (15) | 0.51967 (11) | 0.72276 (10) | 0.0263 (3) | |
H20A | −0.2292 | 0.5474 | 0.6605 | 0.032* | |
H20B | −0.2968 | 0.5335 | 0.7510 | 0.032* | |
C21 | −0.23104 (15) | 0.39215 (11) | 0.70373 (10) | 0.0267 (3) | |
H21A | −0.1517 | 0.3801 | 0.6785 | 0.040* | |
H21B | −0.3228 | 0.3484 | 0.6550 | 0.040* | |
H21C | −0.2259 | 0.3650 | 0.7653 | 0.040* | |
C22 | 0.17640 (13) | 0.85802 (11) | 0.86849 (9) | 0.0160 (3) | |
H22 | 0.1201 | 0.9153 | 0.8673 | 0.019* | |
C23 | 0.20333 (14) | 0.83296 (10) | 0.76879 (9) | 0.0162 (3) | |
C24 | 0.10992 (14) | 0.84699 (11) | 0.68548 (9) | 0.0197 (3) | |
H24 | 0.0276 | 0.8695 | 0.6915 | 0.024* | |
C25 | 0.13467 (15) | 0.82869 (11) | 0.59370 (10) | 0.0218 (3) | |
H25 | 0.0699 | 0.8373 | 0.5369 | 0.026* | |
C26 | 0.25512 (15) | 0.79791 (11) | 0.58763 (10) | 0.0233 (3) | |
C27 | 0.35117 (15) | 0.78274 (11) | 0.66745 (10) | 0.0225 (3) | |
H27 | 0.4336 | 0.7610 | 0.6604 | 0.027* | |
C28 | 0.32418 (14) | 0.80009 (11) | 0.75858 (10) | 0.0198 (3) | |
H28 | 0.3886 | 0.7895 | 0.8146 | 0.024* | |
O9 | 0.13823 (13) | 0.94116 (9) | 0.35763 (7) | 0.0243 (2) | |
O10 | 0.90924 (12) | 0.99386 (10) | 0.82314 (8) | 0.0282 (3) | |
H1A | 0.4218 (15) | 0.0862 (12) | 0.5014 (10) | 0.027 (4)* | |
H2A | 0.4935 (15) | 0.0714 (12) | 0.7678 (11) | 0.035 (4)* | |
H3A | 0.2281 (16) | 0.8644 (13) | 1.1265 (11) | 0.033 (5)* | |
H4A | 0.3906 (15) | 0.9527 (12) | 0.9307 (10) | 0.032 (4)* | |
H9A | 0.065 (2) | 0.8778 (17) | 0.3556 (14) | 0.081 (7)* | |
H9B | 0.215 (2) | 0.9295 (17) | 0.3632 (14) | 0.074 (8)* | |
H10A | 0.8938 (18) | 1.0100 (14) | 0.7657 (13) | 0.049 (5)* | |
H10B | 0.883 (2) | 0.9233 (18) | 0.8184 (14) | 0.080 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.0324 (5) | 0.0316 (5) | 0.0278 (5) | 0.0196 (4) | 0.0087 (4) | 0.0144 (4) |
F2 | 0.0268 (5) | 0.0318 (5) | 0.0332 (5) | 0.0016 (4) | 0.0064 (4) | 0.0162 (4) |
F3 | 0.0391 (5) | 0.0352 (5) | 0.0176 (4) | 0.0168 (4) | 0.0097 (4) | 0.0099 (4) |
F4 | 0.0378 (5) | 0.0467 (5) | 0.0169 (4) | 0.0151 (4) | 0.0028 (4) | −0.0048 (4) |
F5 | 0.0194 (4) | 0.0231 (4) | 0.0288 (5) | 0.0000 (4) | 0.0064 (4) | 0.0057 (4) |
F6 | 0.0336 (5) | 0.0287 (4) | 0.0203 (4) | 0.0055 (4) | 0.0132 (4) | 0.0077 (4) |
F7 | 0.0281 (5) | 0.0213 (4) | 0.0317 (5) | 0.0099 (4) | 0.0087 (4) | 0.0108 (4) |
F8 | 0.0433 (5) | 0.0454 (5) | 0.0210 (5) | 0.0118 (5) | 0.0179 (4) | 0.0039 (4) |
O1 | 0.0218 (5) | 0.0253 (5) | 0.0187 (5) | 0.0129 (4) | 0.0065 (4) | 0.0059 (4) |
O2 | 0.0193 (5) | 0.0221 (5) | 0.0186 (5) | 0.0038 (4) | 0.0036 (4) | 0.0002 (4) |
O3 | 0.0181 (5) | 0.0226 (5) | 0.0303 (6) | 0.0047 (4) | 0.0091 (4) | 0.0047 (4) |
O4 | 0.0203 (5) | 0.0157 (5) | 0.0286 (6) | 0.0071 (4) | 0.0053 (4) | 0.0021 (4) |
O5 | 0.0160 (5) | 0.0221 (5) | 0.0142 (5) | 0.0011 (4) | 0.0005 (4) | 0.0029 (4) |
O6 | 0.0198 (5) | 0.0197 (5) | 0.0186 (5) | 0.0091 (4) | 0.0056 (4) | 0.0024 (4) |
O7 | 0.0203 (5) | 0.0217 (5) | 0.0233 (5) | 0.0066 (4) | 0.0013 (4) | 0.0051 (4) |
O8 | 0.0182 (5) | 0.0172 (5) | 0.0213 (5) | 0.0027 (4) | −0.0001 (4) | −0.0008 (4) |
N1 | 0.0239 (7) | 0.0268 (6) | 0.0136 (6) | 0.0150 (5) | 0.0070 (5) | 0.0057 (5) |
N2 | 0.0240 (7) | 0.0236 (6) | 0.0144 (6) | 0.0136 (5) | 0.0059 (5) | 0.0067 (5) |
N3 | 0.0170 (6) | 0.0212 (6) | 0.0120 (6) | 0.0030 (5) | 0.0039 (5) | 0.0029 (5) |
N4 | 0.0141 (6) | 0.0227 (6) | 0.0144 (6) | 0.0000 (5) | 0.0019 (5) | 0.0044 (5) |
C1 | 0.0184 (7) | 0.0163 (7) | 0.0162 (7) | 0.0035 (6) | 0.0039 (6) | 0.0035 (5) |
C2 | 0.0157 (7) | 0.0191 (7) | 0.0173 (7) | 0.0062 (6) | 0.0040 (6) | 0.0043 (6) |
C3 | 0.0199 (8) | 0.0248 (7) | 0.0201 (7) | 0.0090 (6) | 0.0048 (6) | 0.0070 (6) |
C4 | 0.0147 (7) | 0.0182 (7) | 0.0152 (7) | 0.0048 (6) | 0.0025 (6) | 0.0035 (5) |
C5 | 0.0205 (8) | 0.0190 (7) | 0.0133 (7) | 0.0066 (6) | 0.0028 (6) | 0.0039 (5) |
C6 | 0.0258 (8) | 0.0189 (7) | 0.0319 (8) | 0.0124 (6) | 0.0054 (7) | −0.0003 (6) |
C7 | 0.0308 (9) | 0.0266 (8) | 0.0327 (9) | 0.0143 (7) | 0.0064 (7) | 0.0085 (7) |
C8 | 0.0169 (7) | 0.0180 (7) | 0.0158 (7) | 0.0060 (6) | 0.0047 (6) | 0.0036 (5) |
C9 | 0.0182 (7) | 0.0180 (7) | 0.0172 (7) | 0.0096 (6) | 0.0047 (6) | 0.0051 (5) |
C10 | 0.0179 (7) | 0.0221 (7) | 0.0196 (7) | 0.0074 (6) | 0.0047 (6) | 0.0037 (6) |
C11 | 0.0225 (8) | 0.0327 (8) | 0.0193 (7) | 0.0127 (7) | 0.0090 (6) | 0.0079 (6) |
C12 | 0.0260 (8) | 0.0299 (8) | 0.0145 (7) | 0.0148 (7) | 0.0015 (6) | −0.0002 (6) |
C13 | 0.0215 (8) | 0.0250 (8) | 0.0244 (8) | 0.0030 (6) | 0.0016 (6) | −0.0007 (6) |
C14 | 0.0218 (8) | 0.0253 (7) | 0.0223 (8) | 0.0051 (6) | 0.0084 (6) | 0.0057 (6) |
C15 | 0.0180 (7) | 0.0151 (6) | 0.0171 (7) | 0.0062 (6) | 0.0044 (6) | 0.0048 (5) |
C16 | 0.0140 (7) | 0.0167 (6) | 0.0154 (7) | 0.0043 (6) | 0.0030 (6) | 0.0034 (5) |
C17 | 0.0189 (8) | 0.0210 (7) | 0.0186 (7) | 0.0055 (6) | 0.0058 (6) | 0.0033 (6) |
C18 | 0.0147 (7) | 0.0158 (6) | 0.0160 (7) | 0.0048 (6) | 0.0036 (6) | 0.0025 (5) |
C19 | 0.0190 (7) | 0.0180 (7) | 0.0163 (7) | 0.0034 (6) | 0.0066 (6) | 0.0034 (6) |
C20 | 0.0190 (8) | 0.0252 (8) | 0.0249 (8) | 0.0007 (6) | −0.0027 (6) | −0.0001 (6) |
C21 | 0.0211 (8) | 0.0247 (8) | 0.0265 (8) | 0.0003 (6) | 0.0034 (7) | −0.0017 (6) |
C22 | 0.0145 (7) | 0.0168 (6) | 0.0142 (7) | 0.0029 (6) | 0.0014 (6) | 0.0024 (5) |
C23 | 0.0183 (7) | 0.0142 (6) | 0.0146 (7) | 0.0018 (6) | 0.0054 (6) | 0.0025 (5) |
C24 | 0.0182 (7) | 0.0228 (7) | 0.0184 (7) | 0.0070 (6) | 0.0045 (6) | 0.0045 (6) |
C25 | 0.0246 (8) | 0.0233 (7) | 0.0152 (7) | 0.0051 (6) | 0.0029 (6) | 0.0046 (6) |
C26 | 0.0301 (8) | 0.0217 (7) | 0.0147 (7) | 0.0002 (6) | 0.0109 (6) | −0.0005 (6) |
C27 | 0.0204 (8) | 0.0211 (7) | 0.0265 (8) | 0.0066 (6) | 0.0092 (6) | 0.0017 (6) |
C28 | 0.0203 (8) | 0.0179 (7) | 0.0187 (7) | 0.0042 (6) | 0.0031 (6) | 0.0031 (6) |
O9 | 0.0231 (6) | 0.0241 (6) | 0.0235 (6) | 0.0053 (5) | 0.0048 (5) | 0.0044 (4) |
O10 | 0.0423 (7) | 0.0230 (6) | 0.0188 (6) | 0.0127 (5) | 0.0053 (5) | 0.0031 (5) |
F1—C3 | 1.3408 (15) | C7—H7B | 0.9800 |
F2—C3 | 1.3395 (15) | C7—H7C | 0.9800 |
F3—C3 | 1.3405 (15) | C8—C9 | 1.5159 (17) |
F4—C12 | 1.3671 (15) | C8—H8 | 1.0000 |
F5—C17 | 1.3378 (15) | C9—C10 | 1.3896 (17) |
F6—C17 | 1.3464 (14) | C9—C14 | 1.3897 (18) |
F7—C17 | 1.3388 (14) | C10—C11 | 1.3898 (18) |
F8—C26 | 1.3641 (14) | C10—H10 | 0.9500 |
O1—C1 | 1.2480 (15) | C11—C12 | 1.3666 (19) |
O2—C2 | 1.4019 (15) | C11—H11 | 0.9500 |
O2—H2 | 0.889 (15) | C12—C13 | 1.374 (2) |
O3—C5 | 1.2039 (15) | C13—C14 | 1.3871 (18) |
O4—C5 | 1.3328 (15) | C13—H13 | 0.9500 |
O4—C6 | 1.4600 (15) | C14—H14 | 0.9500 |
O5—C15 | 1.2419 (15) | C16—C17 | 1.5356 (18) |
O6—C16 | 1.4001 (15) | C16—C18 | 1.5474 (17) |
O6—H6 | 0.893 (16) | C18—C19 | 1.5173 (18) |
O7—C19 | 1.2072 (15) | C18—C22 | 1.5424 (17) |
O8—C19 | 1.3395 (15) | C18—H18 | 1.0000 |
O8—C20 | 1.4615 (16) | C20—C21 | 1.5066 (18) |
N1—C1 | 1.3690 (16) | C20—H20A | 0.9900 |
N1—C2 | 1.4418 (16) | C20—H20B | 0.9900 |
N1—H1A | 0.828 (14) | C21—H21A | 0.9800 |
N2—C1 | 1.3377 (16) | C21—H21B | 0.9800 |
N2—C8 | 1.4614 (16) | C21—H21C | 0.9800 |
N2—H2A | 0.906 (14) | C22—C23 | 1.5146 (17) |
N3—C15 | 1.3697 (16) | C22—H22 | 1.0000 |
N3—C16 | 1.4424 (17) | C23—C24 | 1.3923 (17) |
N3—H3A | 0.823 (14) | C23—C28 | 1.3981 (18) |
N4—C15 | 1.3390 (16) | C24—C25 | 1.3890 (17) |
N4—C22 | 1.4610 (16) | C24—H24 | 0.9500 |
N4—H4A | 0.904 (14) | C25—C26 | 1.3671 (19) |
C2—C3 | 1.5380 (18) | C25—H25 | 0.9500 |
C2—C4 | 1.5405 (17) | C26—C27 | 1.3769 (18) |
C4—C5 | 1.5194 (17) | C27—C28 | 1.3894 (18) |
C4—C8 | 1.5416 (17) | C27—H27 | 0.9500 |
C4—H4 | 1.0000 | C28—H28 | 0.9500 |
C6—C7 | 1.5114 (18) | O9—H9A | 0.91 (2) |
C6—H6A | 0.9900 | O9—H9B | 0.80 (2) |
C6—H6B | 0.9900 | O10—H10A | 0.861 (17) |
C7—H7A | 0.9800 | O10—H10B | 0.82 (2) |
C2—O2—H2 | 109.7 (10) | F4—C12—C13 | 118.48 (13) |
C5—O4—C6 | 116.13 (10) | C12—C13—C14 | 117.91 (13) |
C16—O6—H6 | 107.7 (10) | C12—C13—H13 | 121.0 |
C19—O8—C20 | 115.41 (10) | C14—C13—H13 | 121.0 |
C1—N1—C2 | 124.52 (12) | C13—C14—C9 | 121.27 (13) |
C1—N1—H1A | 114.5 (10) | C13—C14—H14 | 119.4 |
C2—N1—H1A | 117.6 (10) | C9—C14—H14 | 119.4 |
C1—N2—C8 | 124.97 (11) | O5—C15—N4 | 123.03 (12) |
C1—N2—H2A | 116.4 (9) | O5—C15—N3 | 119.63 (12) |
C8—N2—H2A | 117.0 (9) | N4—C15—N3 | 117.30 (12) |
C15—N3—C16 | 123.46 (11) | O6—C16—N3 | 113.49 (10) |
C15—N3—H3A | 113.1 (11) | O6—C16—C17 | 109.05 (10) |
C16—N3—H3A | 115.5 (11) | N3—C16—C17 | 105.57 (10) |
C15—N4—C22 | 125.04 (11) | O6—C16—C18 | 109.01 (10) |
C15—N4—H4A | 113.9 (9) | N3—C16—C18 | 108.46 (10) |
C22—N4—H4A | 120.5 (9) | C17—C16—C18 | 111.26 (11) |
O1—C1—N2 | 121.75 (12) | F5—C17—F7 | 107.47 (10) |
O1—C1—N1 | 120.47 (12) | F5—C17—F6 | 107.27 (10) |
N2—C1—N1 | 117.75 (12) | F7—C17—F6 | 107.20 (10) |
O2—C2—N1 | 114.18 (11) | F5—C17—C16 | 112.27 (11) |
O2—C2—C3 | 108.30 (10) | F7—C17—C16 | 111.87 (11) |
N1—C2—C3 | 106.15 (11) | F6—C17—C16 | 110.49 (11) |
O2—C2—C4 | 108.86 (10) | C19—C18—C22 | 110.15 (10) |
N1—C2—C4 | 108.53 (10) | C19—C18—C16 | 111.83 (10) |
C3—C2—C4 | 110.82 (11) | C22—C18—C16 | 107.50 (10) |
F2—C3—F3 | 107.29 (11) | C19—C18—H18 | 109.1 |
F2—C3—F1 | 106.81 (11) | C22—C18—H18 | 109.1 |
F3—C3—F1 | 107.09 (10) | C16—C18—H18 | 109.1 |
F2—C3—C2 | 112.82 (11) | O7—C19—O8 | 123.52 (12) |
F3—C3—C2 | 111.21 (11) | O7—C19—C18 | 125.21 (12) |
F1—C3—C2 | 111.32 (11) | O8—C19—C18 | 111.27 (11) |
C5—C4—C2 | 114.01 (10) | O8—C20—C21 | 107.16 (11) |
C5—C4—C8 | 109.05 (11) | O8—C20—H20A | 110.3 |
C2—C4—C8 | 108.95 (10) | C21—C20—H20A | 110.3 |
C5—C4—H4 | 108.2 | O8—C20—H20B | 110.3 |
C2—C4—H4 | 108.2 | C21—C20—H20B | 110.3 |
C8—C4—H4 | 108.2 | H20A—C20—H20B | 108.5 |
O3—C5—O4 | 124.46 (12) | C20—C21—H21A | 109.5 |
O3—C5—C4 | 125.69 (12) | C20—C21—H21B | 109.5 |
O4—C5—C4 | 109.81 (11) | H21A—C21—H21B | 109.5 |
O4—C6—C7 | 110.18 (11) | C20—C21—H21C | 109.5 |
O4—C6—H6A | 109.6 | H21A—C21—H21C | 109.5 |
C7—C6—H6A | 109.6 | H21B—C21—H21C | 109.5 |
O4—C6—H6B | 109.6 | N4—C22—C23 | 109.79 (11) |
C7—C6—H6B | 109.6 | N4—C22—C18 | 107.87 (10) |
H6A—C6—H6B | 108.1 | C23—C22—C18 | 114.33 (10) |
C6—C7—H7A | 109.5 | N4—C22—H22 | 108.2 |
C6—C7—H7B | 109.5 | C23—C22—H22 | 108.2 |
H7A—C7—H7B | 109.5 | C18—C22—H22 | 108.2 |
C6—C7—H7C | 109.5 | C24—C23—C28 | 118.56 (12) |
H7A—C7—H7C | 109.5 | C24—C23—C22 | 120.04 (11) |
H7B—C7—H7C | 109.5 | C28—C23—C22 | 121.35 (11) |
N2—C8—C9 | 109.11 (10) | C25—C24—C23 | 121.33 (12) |
N2—C8—C4 | 107.61 (10) | C25—C24—H24 | 119.3 |
C9—C8—C4 | 112.55 (10) | C23—C24—H24 | 119.3 |
N2—C8—H8 | 109.2 | C26—C25—C24 | 117.96 (12) |
C9—C8—H8 | 109.2 | C26—C25—H25 | 121.0 |
C4—C8—H8 | 109.2 | C24—C25—H25 | 121.0 |
C10—C9—C14 | 118.47 (13) | F8—C26—C25 | 118.52 (12) |
C10—C9—C8 | 120.19 (12) | F8—C26—C27 | 118.24 (12) |
C14—C9—C8 | 121.31 (12) | C25—C26—C27 | 123.24 (13) |
C9—C10—C11 | 121.14 (13) | C26—C27—C28 | 118.16 (13) |
C9—C10—H10 | 119.4 | C26—C27—H27 | 120.9 |
C11—C10—H10 | 119.4 | C28—C27—H27 | 120.9 |
C12—C11—C10 | 118.08 (13) | C27—C28—C23 | 120.75 (12) |
C12—C11—H11 | 121.0 | C27—C28—H28 | 119.6 |
C10—C11—H11 | 121.0 | C23—C28—H28 | 119.6 |
C11—C12—F4 | 118.40 (13) | H9A—O9—H9B | 114.7 (18) |
C11—C12—C13 | 123.12 (13) | H10A—O10—H10B | 110.6 (17) |
C8—N2—C1—O1 | −175.03 (12) | C22—N4—C15—O5 | −170.31 (12) |
C8—N2—C1—N1 | 7.05 (19) | C22—N4—C15—N3 | 12.12 (18) |
C2—N1—C1—O1 | 176.03 (12) | C16—N3—C15—O5 | 168.82 (11) |
C2—N1—C1—N2 | −6.03 (19) | C16—N3—C15—N4 | −13.53 (18) |
C1—N1—C2—O2 | −90.65 (15) | C15—N3—C16—O6 | −83.84 (15) |
C1—N1—C2—C3 | 150.12 (12) | C15—N3—C16—C17 | 156.78 (12) |
C1—N1—C2—C4 | 30.96 (17) | C15—N3—C16—C18 | 37.46 (16) |
O2—C2—C3—F2 | 174.10 (10) | O6—C16—C17—F5 | 57.31 (14) |
N1—C2—C3—F2 | −62.89 (14) | N3—C16—C17—F5 | 179.58 (10) |
C4—C2—C3—F2 | 54.76 (14) | C18—C16—C17—F5 | −62.96 (14) |
O2—C2—C3—F3 | −65.29 (13) | O6—C16—C17—F7 | 178.24 (10) |
N1—C2—C3—F3 | 57.72 (14) | N3—C16—C17—F7 | −59.49 (13) |
C4—C2—C3—F3 | 175.37 (10) | C18—C16—C17—F7 | 57.97 (14) |
O2—C2—C3—F1 | 54.03 (14) | O6—C16—C17—F6 | −62.40 (13) |
N1—C2—C3—F1 | 177.05 (11) | N3—C16—C17—F6 | 59.87 (13) |
C4—C2—C3—F1 | −65.30 (14) | C18—C16—C17—F6 | 177.33 (10) |
O2—C2—C4—C5 | −51.86 (14) | O6—C16—C18—C19 | −54.09 (13) |
N1—C2—C4—C5 | −176.67 (10) | N3—C16—C18—C19 | −178.11 (10) |
C3—C2—C4—C5 | 67.14 (14) | C17—C16—C18—C19 | 66.20 (14) |
O2—C2—C4—C8 | 70.19 (12) | O6—C16—C18—C22 | 66.94 (13) |
N1—C2—C4—C8 | −54.63 (14) | N3—C16—C18—C22 | −57.08 (13) |
C3—C2—C4—C8 | −170.82 (11) | C17—C16—C18—C22 | −172.77 (10) |
C6—O4—C5—O3 | −1.83 (18) | C20—O8—C19—O7 | −2.87 (18) |
C6—O4—C5—C4 | −179.41 (10) | C20—O8—C19—C18 | 177.89 (10) |
C2—C4—C5—O3 | 69.04 (17) | C22—C18—C19—O7 | −49.13 (17) |
C8—C4—C5—O3 | −52.95 (17) | C16—C18—C19—O7 | 70.36 (16) |
C2—C4—C5—O4 | −113.42 (12) | C22—C18—C19—O8 | 130.10 (11) |
C8—C4—C5—O4 | 124.58 (11) | C16—C18—C19—O8 | −110.42 (12) |
C5—O4—C6—C7 | −84.19 (14) | C19—O8—C20—C21 | −175.59 (11) |
C1—N2—C8—C9 | −155.05 (12) | C15—N4—C22—C23 | −159.94 (12) |
C1—N2—C8—C4 | −32.65 (17) | C15—N4—C22—C18 | −34.77 (16) |
C5—C4—C8—N2 | 180.00 (10) | C19—C18—C22—N4 | 177.29 (10) |
C2—C4—C8—N2 | 55.00 (13) | C16—C18—C22—N4 | 55.21 (13) |
C5—C4—C8—C9 | −59.74 (14) | C19—C18—C22—C23 | −60.28 (14) |
C2—C4—C8—C9 | 175.25 (11) | C16—C18—C22—C23 | 177.64 (10) |
N2—C8—C9—C10 | −116.25 (13) | N4—C22—C23—C24 | −143.56 (12) |
C4—C8—C9—C10 | 124.37 (12) | C18—C22—C23—C24 | 95.07 (14) |
N2—C8—C9—C14 | 61.58 (15) | N4—C22—C23—C28 | 33.85 (16) |
C4—C8—C9—C14 | −57.80 (15) | C18—C22—C23—C28 | −87.53 (15) |
C14—C9—C10—C11 | −0.64 (18) | C28—C23—C24—C25 | 0.19 (19) |
C8—C9—C10—C11 | 177.25 (11) | C22—C23—C24—C25 | 177.67 (12) |
C9—C10—C11—C12 | 1.40 (19) | C23—C24—C25—C26 | −0.9 (2) |
C10—C11—C12—F4 | 178.09 (11) | C24—C25—C26—F8 | −178.72 (11) |
C10—C11—C12—C13 | −1.1 (2) | C24—C25—C26—C27 | 1.0 (2) |
C11—C12—C13—C14 | 0.1 (2) | F8—C26—C27—C28 | 179.41 (11) |
F4—C12—C13—C14 | −179.12 (11) | C25—C26—C27—C28 | −0.3 (2) |
C12—C13—C14—C9 | 0.7 (2) | C26—C27—C28—C23 | −0.5 (2) |
C10—C9—C14—C13 | −0.43 (19) | C24—C23—C28—C27 | 0.53 (19) |
C8—C9—C14—C13 | −178.30 (12) | C22—C23—C28—C27 | −176.91 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O9i | 0.889 (15) | 1.860 (16) | 2.7482 (14) | 176.2 (15) |
O9—H9A···O3ii | 0.91 (2) | 1.90 (2) | 2.8026 (15) | 169.8 (18) |
O6—H6···O10iii | 0.893 (16) | 1.788 (16) | 2.6770 (14) | 173.5 (15) |
N3—H3A···O10iii | 0.823 (14) | 2.583 (15) | 3.0737 (16) | 119.6 (12) |
N4—H4A···O5iii | 0.904 (14) | 1.900 (15) | 2.8010 (14) | 174.8 (13) |
N1—H1A···O1iv | 0.828 (14) | 2.109 (14) | 2.9235 (15) | 167.9 (13) |
N2—H2A···O5v | 0.906 (14) | 1.958 (15) | 2.8395 (14) | 163.8 (13) |
O9—H9B···O1vi | 0.80 (2) | 2.00 (2) | 2.7443 (15) | 155 (2) |
O10—H10A···O9vii | 0.861 (17) | 1.925 (17) | 2.7833 (15) | 175.4 (16) |
O10—H10B···O7viii | 0.82 (2) | 2.07 (2) | 2.8685 (14) | 166 (2) |
Symmetry codes: (i) x, y−1, z; (ii) −x, −y+1, −z+1; (iii) −x+1, −y+2, −z+2; (iv) −x+1, −y, −z+1; (v) −x+1, −y+1, −z+2; (vi) −x+1, −y+1, −z+1; (vii) −x+1, −y+2, −z+1; (viii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C14H14F4N2O4·H2O |
Mr | 368.29 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 113 |
a, b, c (Å) | 10.0196 (9), 12.1718 (12), 14.3037 (14) |
α, β, γ (°) | 98.463 (7), 103.642 (8), 104.400 (9) |
V (Å3) | 1602.2 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.20 × 0.18 × 0.14 |
Data collection | |
Diffractometer | Rigaku Saturn CCD area detector diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2009) |
Tmin, Tmax | 0.972, 0.980 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20692, 7612, 4575 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.658 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.072, 0.87 |
No. of reflections | 7612 |
No. of parameters | 493 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.35, −0.19 |
Computer programs: CrystalClear (Rigaku, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O9i | 0.889 (15) | 1.860 (16) | 2.7482 (14) | 176.2 (15) |
O9—H9A···O3ii | 0.91 (2) | 1.90 (2) | 2.8026 (15) | 169.8 (18) |
O6—H6···O10iii | 0.893 (16) | 1.788 (16) | 2.6770 (14) | 173.5 (15) |
N3—H3A···O10iii | 0.823 (14) | 2.583 (15) | 3.0737 (16) | 119.6 (12) |
N4—H4A···O5iii | 0.904 (14) | 1.900 (15) | 2.8010 (14) | 174.8 (13) |
N1—H1A···O1iv | 0.828 (14) | 2.109 (14) | 2.9235 (15) | 167.9 (13) |
N2—H2A···O5v | 0.906 (14) | 1.958 (15) | 2.8395 (14) | 163.8 (13) |
O9—H9B···O1vi | 0.80 (2) | 2.00 (2) | 2.7443 (15) | 155 (2) |
O10—H10A···O9vii | 0.861 (17) | 1.925 (17) | 2.7833 (15) | 175.4 (16) |
O10—H10B···O7viii | 0.82 (2) | 2.07 (2) | 2.8685 (14) | 166 (2) |
Symmetry codes: (i) x, y−1, z; (ii) −x, −y+1, −z+1; (iii) −x+1, −y+2, −z+2; (iv) −x+1, −y, −z+1; (v) −x+1, −y+1, −z+2; (vi) −x+1, −y+1, −z+1; (vii) −x+1, −y+2, −z+1; (viii) x+1, y, z. |
Acknowledgements
This work was supported by the Natural Science Foundation of Henan Province, China (grant No. 082300420110) and the Natural Science Foundation of Henan Province Education Department, China (grant No. 2007150036).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Dihydropyrimidine (DHPM) derivatives can be used as potential calcium channel blockers (Zorkun et al., 2006), inhibitors of mitotic kinesin Eg5 for treating cancer (Cochran et al., 2005; Brier et al., 2004) and as TRPA1 modulators for treating pain (Moran et al., 2007). In addition, compounds that contain fluorine have special bioactivity, e.g. flumioxazin is a widely used herbicide (Hermann et al., 2003; Ulrich, 2004). This led us to focus our attention on the synthesis and bioactivity of these important fused perfluoroalkylated heterocyclic compounds. During the synthesis of DHPM derivatives, the title compound, an intermediate C14H14F4N2O4.H2O(I) was isolated and the structure confirmed by X-ray diffraction.
The asymmetric unit of the title compound contains two crystallographically independent organic molecules and two water molecules. The two 1,3-diazinane rings adopt half-chair conformation, the mean planes formed by the ring atoms excluding the C atom bonded to the ethoxy carbonyl group have r.m.s. deviations of 0.0202Å and 0.0397 Å, the dihedral angles between the mean planes and benzenes ring are 75.65 (4)° and 49.41 (3)° respectively. The crystal structure is stabilized by intermolecular hydrogen bonds (O—H···O and N—H···O). For a crystal structure related to the title compound, see: Song et al., 2010.