metal-organic compounds
Bis(2,2′-bipyridine-κ2N,N′)bis(1H-indole-2-carboxylato-κ2O,O′)cadmium–2,2′-bipyridine–water (1/0.5/2)
aCollege of Pharmaceutics and Material Engineering, Jinhua College of Profession and Technology, Jinhua, Zhejiang 321007, People's Republic of China
*Correspondence e-mail: zbs_jy@163.com
The 9H6NO2)2(C10H8N2)2]·0.5C10H8N2·2H2O, consists of one complex molecule, one half of an uncoordinated 2,2′-bipyridine molecule and two solvent water molecules. The uncoordinated 2,2′-bipyridine molecule is located on a center of symmetry. Within the complex molecule, the CdII atom is coordinated by four N atoms from two 2,2′-bipyridine ligands and three O atoms from two 1H-indole-2-carboxylate anion ligands, completing a distorted CdN4O3 pentagonal bipyramid. The molecules are assembled into one-dimensional chains along the [100] direction through classical hydrogen bonds (O—H⋯N, N—H⋯O and O—H⋯O). The resulting chains are further connected into two-dimensional supramolecular layers parallel to the (110) direction by intermolecular classical hydrogen bonds (N—H⋯O and O—H⋯O) from adjacent chains. A three-dimensional supramolecular network is formed via interlayer and O—H⋯O hydrogen bonds.
of title compound, [Cd(CRelated literature
For general background, see: Dillon et al. (2003). For related cadmium(II) complexes with bipyridine and 1,10-phenanthroline ligands, see: Zhang et al. (2005); Lou & Zhang (2007).
Experimental
Crystal data
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Refinement
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Data collection: RAPID-AUTO (Rigaku, 1998); cell RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPII (Johnson, 1976) and DIAMOND (Brandenburg & Putz, 2004); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536811021064/rk2274sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811021064/rk2274Isup2.hkl
CdCl2.6H2O (0.11 g, 0.54 mmol) was dissolved in appropriate amount of water, and then 1M Na2CO3 solution was added. CdCO3 was obtained by filtration, which was then washed with distilled water for 5 times. The freshly prepared CdCO3, 2-indolyl-formic acid (0.0725 g, 0.5 mmol), 2,2'-bipyridine (0.0781 g, 0.5 mmol), CH3OH/H2O (v/v = 1:2, 15 ml) were mixed and stirred for 2.0 h. Subsequently, the resulting cream suspension was heated in a 23 ml Teflon-lined stainless steel autoclave at 433 K for 5800 min. After that, autoclave was cooled to room temperature according to the procedure at 2600 min. The solid was filtered off. The resulting filtrate was allowed to stand at room temperature, and slow evaporation for 4 months afforded colourless block single crystals.
The C-bound H atoms were placed in calculated positions, with C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C), and were refined using the riding-model approximation. The H atoms of the water molecule were located in a difference Fourier map and refined with an O—H distance restraint of 0.82 Å and Uiso(H) = 1.5Ueq(O). H atoms attached to N atoms were placed in calculated positions, with N—H = 0.86 Å and Uiso(H) = 1.2Ueq(N), and were refined using a riding model. The largest peak in the final difference Fourier map is 1.49 Å from atom Cd1 and the deepest hole is 0.94 Å from atom Cd1.
Data collection: RAPID-AUTO (Rigaku, 1998); cell
RAPID-AUTO (Rigaku, 1998); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPII (Johnson, 1976) and DIAMOND (Brandenburg & Putz, 2004); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The molecule structure of the title compound, showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as a small spheres of arbitrary radius. Symmetry code: (i) -x, -y + 2, -z + 1. | |
Fig. 2. A packing diagram of the title compound. H atoms are omitted for clarity. |
[Cd(C9H6NO2)2(C10H8N2)2]·0.5C10H8N2·2H2O | Z = 2 |
Mr = 859.19 | F(000) = 878 |
Triclinic, P1 | Dx = 1.489 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 11.513 (2) Å | Cell parameters from 10384 reflections |
b = 12.945 (3) Å | θ = 3.2–25° |
c = 14.302 (3) Å | µ = 0.63 mm−1 |
α = 114.95 (3)° | T = 290 K |
β = 94.27 (3)° | Block, colourless |
γ = 93.84 (3)° | 0.26 × 0.19 × 0.06 mm |
V = 1915.8 (9) Å3 |
Rigaku R-AXIS RAPID diffractometer | 6724 independent reflections |
Radiation source: fine-focus sealed tube | 4444 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.058 |
ω scans | θmax = 25.0°, θmin = 3.1° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −13→12 |
Tmin = 0.865, Tmax = 0.963 | k = −15→15 |
15180 measured reflections | l = −16→16 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
wR(F2) = 0.106 | w = 1/[σ2(Fo2) + (0.P)2 + 4.4876P] where P = (Fo2 + 2Fc2)/3 |
S = 1.17 | (Δ/σ)max < 0.001 |
6724 reflections | Δρmax = 1.26 e Å−3 |
515 parameters | Δρmin = −1.55 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0015 (2) |
[Cd(C9H6NO2)2(C10H8N2)2]·0.5C10H8N2·2H2O | γ = 93.84 (3)° |
Mr = 859.19 | V = 1915.8 (9) Å3 |
Triclinic, P1 | Z = 2 |
a = 11.513 (2) Å | Mo Kα radiation |
b = 12.945 (3) Å | µ = 0.63 mm−1 |
c = 14.302 (3) Å | T = 290 K |
α = 114.95 (3)° | 0.26 × 0.19 × 0.06 mm |
β = 94.27 (3)° |
Rigaku R-AXIS RAPID diffractometer | 6724 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 4444 reflections with I > 2σ(I) |
Tmin = 0.865, Tmax = 0.963 | Rint = 0.058 |
15180 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.106 | H-atom parameters constrained |
S = 1.17 | Δρmax = 1.26 e Å−3 |
6724 reflections | Δρmin = −1.55 e Å−3 |
515 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.36632 (4) | 0.14575 (4) | 0.19144 (3) | 0.03937 (15) | |
N1 | 0.3953 (4) | 0.3521 (4) | 0.2404 (4) | 0.0463 (12) | |
N2 | 0.3905 (4) | 0.1847 (4) | 0.0463 (3) | 0.0414 (11) | |
N3 | 0.2855 (4) | 0.2010 (4) | 0.3542 (3) | 0.0421 (11) | |
N4 | 0.1600 (4) | 0.1689 (4) | 0.1760 (4) | 0.0512 (13) | |
N5 | 0.7181 (4) | 0.2314 (4) | 0.4379 (3) | 0.0427 (11) | |
H5C | 0.6805 | 0.1670 | 0.4272 | 0.051* | |
N6 | 0.2909 (4) | −0.2837 (4) | −0.0315 (3) | 0.0460 (12) | |
H6C | 0.3187 | −0.2581 | −0.0727 | 0.055* | |
N7 | −0.1248 (4) | 0.9667 (5) | 0.4058 (4) | 0.0660 (15) | |
O1 | 0.5438 (3) | 0.1593 (3) | 0.2739 (3) | 0.0506 (10) | |
O2 | 0.6372 (3) | 0.2675 (4) | 0.2080 (3) | 0.0620 (12) | |
O3 | 0.3234 (4) | −0.0430 (3) | 0.2186 (3) | 0.0583 (11) | |
O4 | 0.3252 (3) | −0.0426 (3) | 0.0641 (3) | 0.0558 (11) | |
O5 | 0.6427 (3) | 1.0228 (3) | 0.4546 (3) | 0.0622 (12) | |
H5A | 0.5887 | 0.9811 | 0.4117 | 0.093* | |
H5B | 0.7061 | 0.9968 | 0.4473 | 0.093* | |
O6 | 0.4400 (4) | 0.8833 (4) | 0.3526 (3) | 0.0711 (13) | |
H6A | 0.3978 | 0.9092 | 0.3991 | 0.107* | |
H6B | 0.4082 | 0.9014 | 0.3094 | 0.107* | |
C1 | 0.3993 (5) | 0.4320 (5) | 0.3376 (5) | 0.0562 (17) | |
H1 | 0.3943 | 0.4085 | 0.3905 | 0.067* | |
C2 | 0.4103 (5) | 0.5467 (6) | 0.3634 (5) | 0.0623 (18) | |
H2 | 0.4143 | 0.6000 | 0.4323 | 0.075* | |
C3 | 0.4153 (6) | 0.5814 (5) | 0.2856 (6) | 0.0674 (19) | |
H3 | 0.4206 | 0.6588 | 0.3004 | 0.081* | |
C4 | 0.4124 (5) | 0.4995 (6) | 0.1847 (5) | 0.0623 (18) | |
H4 | 0.4159 | 0.5215 | 0.1309 | 0.075* | |
C5 | 0.4043 (5) | 0.3852 (5) | 0.1639 (5) | 0.0429 (14) | |
C6 | 0.4060 (4) | 0.2936 (5) | 0.0575 (4) | 0.0413 (14) | |
C7 | 0.4251 (5) | 0.3177 (6) | −0.0262 (5) | 0.0568 (17) | |
H7 | 0.4340 | 0.3933 | −0.0172 | 0.068* | |
C8 | 0.4309 (5) | 0.2301 (6) | −0.1221 (5) | 0.0570 (17) | |
H8 | 0.4443 | 0.2457 | −0.1784 | 0.068* | |
C9 | 0.4166 (5) | 0.1195 (6) | −0.1335 (5) | 0.0501 (15) | |
H9 | 0.4205 | 0.0587 | −0.1976 | 0.060* | |
C10 | 0.3961 (4) | 0.0996 (5) | −0.0480 (5) | 0.0464 (15) | |
H10 | 0.3857 | 0.0243 | −0.0562 | 0.056* | |
C11 | 0.3500 (5) | 0.2125 (5) | 0.4401 (5) | 0.0542 (16) | |
H11 | 0.4272 | 0.1958 | 0.4352 | 0.065* | |
C12 | 0.3092 (6) | 0.2475 (6) | 0.5350 (5) | 0.0668 (19) | |
H12 | 0.3571 | 0.2540 | 0.5930 | 0.080* | |
C13 | 0.1967 (7) | 0.2724 (6) | 0.5417 (5) | 0.070 (2) | |
H13 | 0.1667 | 0.2984 | 0.6054 | 0.084* | |
C14 | 0.1268 (6) | 0.2589 (6) | 0.4539 (5) | 0.0622 (18) | |
H14 | 0.0492 | 0.2747 | 0.4579 | 0.075* | |
C15 | 0.1731 (5) | 0.2216 (4) | 0.3596 (4) | 0.0415 (14) | |
C16 | 0.1037 (5) | 0.2016 (5) | 0.2606 (4) | 0.0435 (14) | |
C17 | −0.0148 (5) | 0.2143 (6) | 0.2558 (6) | 0.0626 (18) | |
H17 | −0.0530 | 0.2360 | 0.3151 | 0.075* | |
C18 | −0.0748 (6) | 0.1945 (7) | 0.1626 (6) | 0.083 (2) | |
H18 | −0.1545 | 0.2021 | 0.1582 | 0.099* | |
C19 | −0.0180 (6) | 0.1636 (8) | 0.0765 (6) | 0.099 (3) | |
H19 | −0.0570 | 0.1515 | 0.0129 | 0.119* | |
C20 | 0.1004 (5) | 0.1506 (7) | 0.0866 (5) | 0.085 (3) | |
H20 | 0.1396 | 0.1280 | 0.0278 | 0.101* | |
C21 | 0.6248 (5) | 0.2348 (5) | 0.2767 (4) | 0.0424 (14) | |
C22 | 0.7075 (4) | 0.2856 (5) | 0.3740 (4) | 0.0406 (14) | |
C23 | 0.7796 (4) | 0.3861 (5) | 0.4152 (4) | 0.0446 (14) | |
H23 | 0.7892 | 0.4380 | 0.3864 | 0.054* | |
C24 | 0.8374 (4) | 0.3962 (5) | 0.5108 (4) | 0.0410 (14) | |
C25 | 0.9183 (5) | 0.4786 (5) | 0.5900 (5) | 0.0546 (16) | |
H25 | 0.9451 | 0.5456 | 0.5856 | 0.066* | |
C26 | 0.9571 (5) | 0.4596 (6) | 0.6732 (5) | 0.0598 (18) | |
H26 | 1.0104 | 0.5143 | 0.7256 | 0.072* | |
C27 | 0.9183 (5) | 0.3594 (6) | 0.6811 (5) | 0.0600 (18) | |
H27 | 0.9473 | 0.3480 | 0.7381 | 0.072* | |
C28 | 0.8382 (5) | 0.2776 (5) | 0.6066 (5) | 0.0538 (16) | |
H28 | 0.8114 | 0.2115 | 0.6126 | 0.065* | |
C29 | 0.7985 (4) | 0.2967 (5) | 0.5217 (4) | 0.0400 (13) | |
C31 | 0.3117 (5) | −0.0931 (5) | 0.1209 (5) | 0.0449 (14) | |
C32 | 0.2787 (4) | −0.2191 (5) | 0.0709 (4) | 0.0392 (13) | |
C33 | 0.2308 (5) | −0.2888 (5) | 0.1117 (5) | 0.0524 (16) | |
H33 | 0.2147 | −0.2664 | 0.1799 | 0.063* | |
C34 | 0.2103 (5) | −0.4011 (5) | 0.0308 (4) | 0.0480 (15) | |
C35 | 0.1611 (5) | −0.5075 (5) | 0.0239 (5) | 0.0614 (18) | |
H35 | 0.1328 | −0.5130 | 0.0810 | 0.074* | |
C36 | 0.1561 (6) | −0.6015 (6) | −0.0683 (6) | 0.074 (2) | |
H36 | 0.1226 | −0.6717 | −0.0742 | 0.088* | |
C37 | 0.1997 (6) | −0.5951 (6) | −0.1537 (6) | 0.070 (2) | |
H37 | 0.1962 | −0.6615 | −0.2151 | 0.084* | |
C38 | 0.2484 (6) | −0.4927 (6) | −0.1504 (5) | 0.0606 (17) | |
H38 | 0.2776 | −0.4890 | −0.2079 | 0.073* | |
C39 | 0.2515 (5) | −0.3961 (5) | −0.0576 (4) | 0.0441 (14) | |
C41 | −0.1487 (6) | 0.9382 (7) | 0.3045 (6) | 0.083 (2) | |
H41 | −0.2270 | 0.9264 | 0.2776 | 0.100* | |
C42 | −0.0659 (7) | 0.9251 (6) | 0.2373 (6) | 0.077 (2) | |
H42 | −0.0875 | 0.9037 | 0.1671 | 0.092* | |
C43 | 0.0489 (6) | 0.9446 (5) | 0.2767 (5) | 0.0643 (18) | |
H43 | 0.1077 | 0.9376 | 0.2339 | 0.077* | |
C44 | 0.0766 (5) | 0.9749 (5) | 0.3810 (5) | 0.0550 (16) | |
H44 | 0.1547 | 0.9888 | 0.4090 | 0.066* | |
C45 | −0.0117 (5) | 0.9847 (5) | 0.4443 (4) | 0.0465 (15) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.0375 (2) | 0.0444 (3) | 0.0352 (2) | 0.00611 (17) | 0.00440 (16) | 0.01586 (19) |
N1 | 0.049 (3) | 0.040 (3) | 0.050 (3) | 0.009 (2) | 0.009 (2) | 0.019 (3) |
N2 | 0.042 (3) | 0.044 (3) | 0.036 (3) | 0.009 (2) | 0.005 (2) | 0.015 (2) |
N3 | 0.051 (3) | 0.045 (3) | 0.027 (3) | 0.007 (2) | 0.008 (2) | 0.011 (2) |
N4 | 0.035 (3) | 0.075 (4) | 0.043 (3) | 0.014 (2) | 0.006 (2) | 0.023 (3) |
N5 | 0.048 (3) | 0.042 (3) | 0.037 (3) | 0.000 (2) | −0.002 (2) | 0.018 (2) |
N6 | 0.053 (3) | 0.051 (3) | 0.034 (3) | 0.006 (2) | 0.005 (2) | 0.019 (3) |
N7 | 0.047 (3) | 0.085 (4) | 0.063 (4) | 0.000 (3) | −0.002 (3) | 0.031 (3) |
O1 | 0.042 (2) | 0.050 (3) | 0.056 (3) | 0.0005 (19) | −0.0068 (19) | 0.022 (2) |
O2 | 0.048 (2) | 0.101 (4) | 0.048 (3) | 0.000 (2) | 0.006 (2) | 0.044 (3) |
O3 | 0.071 (3) | 0.044 (3) | 0.050 (3) | 0.001 (2) | 0.010 (2) | 0.011 (2) |
O4 | 0.063 (3) | 0.047 (3) | 0.070 (3) | 0.007 (2) | 0.010 (2) | 0.036 (2) |
O5 | 0.051 (2) | 0.071 (3) | 0.068 (3) | 0.002 (2) | 0.001 (2) | 0.035 (3) |
O6 | 0.083 (3) | 0.072 (3) | 0.054 (3) | −0.004 (3) | 0.005 (2) | 0.026 (3) |
C1 | 0.069 (4) | 0.047 (4) | 0.044 (4) | 0.008 (3) | 0.019 (3) | 0.009 (3) |
C2 | 0.062 (4) | 0.048 (4) | 0.061 (5) | 0.009 (3) | 0.017 (3) | 0.007 (4) |
C3 | 0.074 (5) | 0.033 (4) | 0.088 (6) | 0.008 (3) | 0.013 (4) | 0.018 (4) |
C4 | 0.068 (4) | 0.053 (4) | 0.065 (5) | 0.010 (3) | 0.011 (3) | 0.024 (4) |
C5 | 0.039 (3) | 0.037 (4) | 0.055 (4) | 0.010 (3) | 0.003 (3) | 0.022 (3) |
C6 | 0.035 (3) | 0.049 (4) | 0.046 (4) | 0.007 (3) | 0.005 (3) | 0.026 (3) |
C7 | 0.064 (4) | 0.056 (4) | 0.061 (4) | 0.007 (3) | 0.009 (3) | 0.035 (4) |
C8 | 0.071 (4) | 0.069 (5) | 0.039 (4) | 0.014 (4) | 0.012 (3) | 0.029 (4) |
C9 | 0.045 (3) | 0.063 (4) | 0.042 (4) | 0.018 (3) | 0.008 (3) | 0.021 (3) |
C10 | 0.042 (3) | 0.054 (4) | 0.049 (4) | 0.008 (3) | 0.005 (3) | 0.027 (3) |
C11 | 0.059 (4) | 0.062 (4) | 0.040 (4) | 0.007 (3) | 0.009 (3) | 0.020 (3) |
C12 | 0.084 (5) | 0.074 (5) | 0.043 (4) | 0.004 (4) | 0.006 (4) | 0.027 (4) |
C13 | 0.098 (6) | 0.070 (5) | 0.046 (4) | 0.023 (4) | 0.029 (4) | 0.023 (4) |
C14 | 0.061 (4) | 0.071 (5) | 0.056 (4) | 0.023 (4) | 0.026 (3) | 0.023 (4) |
C15 | 0.044 (3) | 0.034 (3) | 0.046 (4) | 0.007 (3) | 0.017 (3) | 0.014 (3) |
C16 | 0.040 (3) | 0.038 (3) | 0.049 (4) | 0.007 (3) | 0.010 (3) | 0.014 (3) |
C17 | 0.039 (3) | 0.076 (5) | 0.076 (5) | 0.016 (3) | 0.018 (3) | 0.031 (4) |
C18 | 0.045 (4) | 0.120 (7) | 0.092 (6) | 0.020 (4) | 0.006 (4) | 0.054 (6) |
C19 | 0.052 (5) | 0.179 (9) | 0.074 (6) | 0.018 (5) | −0.008 (4) | 0.064 (6) |
C20 | 0.046 (4) | 0.156 (8) | 0.053 (5) | 0.018 (4) | 0.001 (3) | 0.045 (5) |
C21 | 0.036 (3) | 0.048 (4) | 0.046 (4) | 0.019 (3) | 0.007 (3) | 0.020 (3) |
C22 | 0.033 (3) | 0.055 (4) | 0.035 (3) | 0.009 (3) | 0.007 (2) | 0.019 (3) |
C23 | 0.039 (3) | 0.049 (4) | 0.049 (4) | 0.000 (3) | 0.007 (3) | 0.025 (3) |
C24 | 0.035 (3) | 0.044 (4) | 0.043 (4) | 0.003 (3) | 0.006 (3) | 0.018 (3) |
C25 | 0.056 (4) | 0.050 (4) | 0.053 (4) | −0.007 (3) | 0.001 (3) | 0.020 (3) |
C26 | 0.057 (4) | 0.063 (5) | 0.046 (4) | −0.012 (3) | −0.004 (3) | 0.015 (4) |
C27 | 0.050 (4) | 0.076 (5) | 0.053 (4) | −0.001 (3) | −0.007 (3) | 0.030 (4) |
C28 | 0.055 (4) | 0.059 (4) | 0.053 (4) | −0.002 (3) | −0.002 (3) | 0.032 (4) |
C29 | 0.037 (3) | 0.047 (4) | 0.037 (3) | 0.002 (3) | 0.004 (2) | 0.020 (3) |
C31 | 0.034 (3) | 0.043 (4) | 0.054 (4) | 0.011 (3) | 0.008 (3) | 0.015 (3) |
C32 | 0.042 (3) | 0.037 (3) | 0.037 (3) | 0.008 (3) | 0.008 (2) | 0.013 (3) |
C33 | 0.063 (4) | 0.053 (4) | 0.043 (4) | 0.002 (3) | 0.013 (3) | 0.021 (3) |
C34 | 0.048 (3) | 0.046 (4) | 0.044 (4) | 0.004 (3) | 0.003 (3) | 0.015 (3) |
C35 | 0.071 (4) | 0.048 (4) | 0.066 (5) | −0.004 (3) | 0.009 (3) | 0.027 (4) |
C36 | 0.086 (5) | 0.047 (5) | 0.080 (6) | −0.005 (4) | −0.010 (4) | 0.023 (4) |
C37 | 0.094 (5) | 0.043 (4) | 0.057 (5) | 0.008 (4) | −0.013 (4) | 0.008 (4) |
C38 | 0.075 (5) | 0.062 (5) | 0.039 (4) | 0.013 (4) | −0.003 (3) | 0.016 (4) |
C39 | 0.046 (3) | 0.045 (4) | 0.036 (3) | 0.003 (3) | −0.002 (3) | 0.013 (3) |
C41 | 0.058 (5) | 0.114 (7) | 0.067 (5) | −0.005 (4) | −0.007 (4) | 0.033 (5) |
C42 | 0.088 (6) | 0.080 (6) | 0.053 (5) | 0.002 (4) | −0.001 (4) | 0.022 (4) |
C43 | 0.079 (5) | 0.055 (4) | 0.061 (5) | 0.014 (4) | 0.017 (4) | 0.024 (4) |
C44 | 0.048 (4) | 0.052 (4) | 0.070 (5) | 0.007 (3) | 0.007 (3) | 0.030 (4) |
C45 | 0.045 (3) | 0.041 (4) | 0.054 (4) | 0.001 (3) | 0.002 (3) | 0.022 (3) |
Cd1—O1 | 2.239 (4) | C12—H12 | 0.9300 |
Cd1—O4 | 2.336 (4) | C13—C14 | 1.378 (9) |
Cd1—N2 | 2.364 (4) | C13—H13 | 0.9300 |
Cd1—N3 | 2.408 (4) | C14—C15 | 1.389 (7) |
Cd1—N4 | 2.419 (4) | C14—H14 | 0.9300 |
Cd1—N1 | 2.450 (5) | C15—C16 | 1.484 (8) |
Cd1—O3 | 2.653 (4) | C16—C17 | 1.385 (7) |
N1—C1 | 1.333 (7) | C17—C18 | 1.368 (9) |
N1—C5 | 1.340 (7) | C17—H17 | 0.9300 |
N2—C10 | 1.344 (7) | C18—C19 | 1.357 (9) |
N2—C6 | 1.347 (7) | C18—H18 | 0.9300 |
N3—C11 | 1.333 (7) | C19—C20 | 1.388 (9) |
N3—C15 | 1.341 (6) | C19—H19 | 0.9300 |
N4—C20 | 1.325 (7) | C20—H20 | 0.9300 |
N4—C16 | 1.335 (7) | C21—C22 | 1.491 (7) |
N5—C22 | 1.371 (6) | C22—C23 | 1.365 (7) |
N5—C29 | 1.372 (6) | C23—C24 | 1.425 (7) |
N5—H5C | 0.8600 | C23—H23 | 0.9300 |
N6—C32 | 1.370 (6) | C24—C25 | 1.407 (7) |
N6—C39 | 1.375 (7) | C24—C29 | 1.410 (7) |
N6—H6C | 0.8600 | C25—C26 | 1.364 (8) |
N7—C41 | 1.336 (8) | C25—H25 | 0.9300 |
N7—C45 | 1.341 (7) | C26—C27 | 1.395 (8) |
O1—C21 | 1.290 (6) | C26—H26 | 0.9300 |
O2—C21 | 1.236 (6) | C27—C28 | 1.371 (8) |
O3—C31 | 1.261 (7) | C27—H27 | 0.9300 |
O4—C31 | 1.250 (7) | C28—C29 | 1.389 (7) |
O5—H5A | 0.8200 | C28—H28 | 0.9300 |
O5—H5B | 0.8200 | C31—C32 | 1.486 (7) |
O6—H6A | 0.8200 | C32—C33 | 1.372 (7) |
O6—H6B | 0.8200 | C33—C34 | 1.415 (8) |
C1—C2 | 1.364 (8) | C33—H33 | 0.9300 |
C1—H1 | 0.9300 | C34—C39 | 1.408 (7) |
C2—C3 | 1.368 (9) | C34—C35 | 1.413 (8) |
C2—H2 | 0.9300 | C35—C36 | 1.359 (9) |
C3—C4 | 1.380 (8) | C35—H35 | 0.9300 |
C3—H3 | 0.9300 | C36—C37 | 1.387 (9) |
C4—C5 | 1.376 (8) | C36—H36 | 0.9300 |
C4—H4 | 0.9300 | C37—C38 | 1.384 (9) |
C5—C6 | 1.486 (8) | C37—H37 | 0.9300 |
C6—C7 | 1.387 (7) | C38—C39 | 1.383 (8) |
C7—C8 | 1.373 (8) | C38—H38 | 0.9300 |
C7—H7 | 0.9300 | C41—C42 | 1.371 (9) |
C8—C9 | 1.368 (8) | C41—H41 | 0.9300 |
C8—H8 | 0.9300 | C42—C43 | 1.361 (9) |
C9—C10 | 1.384 (7) | C42—H42 | 0.9300 |
C9—H9 | 0.9300 | C43—C44 | 1.377 (8) |
C10—H10 | 0.9300 | C43—H43 | 0.9300 |
C11—C12 | 1.369 (8) | C44—C45 | 1.389 (8) |
C11—H11 | 0.9300 | C44—H44 | 0.9300 |
C12—C13 | 1.356 (9) | C45—C45i | 1.468 (11) |
O1—Cd1—O4 | 107.11 (14) | N3—C15—C14 | 120.3 (5) |
O1—Cd1—N2 | 108.36 (14) | N3—C15—C16 | 116.3 (5) |
O4—Cd1—N2 | 82.76 (15) | C14—C15—C16 | 123.4 (5) |
O1—Cd1—N3 | 89.13 (15) | N4—C16—C17 | 121.4 (6) |
O4—Cd1—N3 | 119.52 (14) | N4—C16—C15 | 117.2 (5) |
N2—Cd1—N3 | 146.91 (16) | C17—C16—C15 | 121.4 (5) |
O1—Cd1—N4 | 156.39 (15) | C18—C17—C16 | 119.2 (6) |
O4—Cd1—N4 | 89.06 (16) | C18—C17—H17 | 120.4 |
N2—Cd1—N4 | 90.32 (16) | C16—C17—H17 | 120.4 |
N3—Cd1—N4 | 67.69 (16) | C19—C18—C17 | 119.9 (6) |
O1—Cd1—N1 | 89.04 (15) | C19—C18—H18 | 120.0 |
O4—Cd1—N1 | 150.16 (15) | C17—C18—H18 | 120.0 |
N2—Cd1—N1 | 68.19 (16) | C18—C19—C20 | 117.8 (7) |
N3—Cd1—N1 | 84.76 (16) | C18—C19—H19 | 121.1 |
N4—Cd1—N1 | 84.58 (16) | C20—C19—H19 | 121.1 |
O1—Cd1—O3 | 84.88 (14) | N4—C20—C19 | 123.2 (6) |
O4—Cd1—O3 | 52.23 (13) | N4—C20—H20 | 118.4 |
N2—Cd1—O3 | 134.85 (15) | C19—C20—H20 | 118.4 |
N3—Cd1—O3 | 72.87 (14) | O2—C21—O1 | 125.9 (5) |
N4—Cd1—O3 | 92.11 (15) | O2—C21—C22 | 119.4 (5) |
N1—Cd1—O3 | 156.86 (15) | O1—C21—C22 | 114.6 (5) |
C1—N1—C5 | 118.9 (5) | C23—C22—N5 | 109.8 (5) |
C1—N1—Cd1 | 123.7 (4) | C23—C22—C21 | 129.4 (5) |
C5—N1—Cd1 | 117.4 (4) | N5—C22—C21 | 120.8 (5) |
C10—N2—C6 | 118.2 (5) | C22—C23—C24 | 106.9 (5) |
C10—N2—Cd1 | 121.1 (4) | C22—C23—H23 | 126.5 |
C6—N2—Cd1 | 120.6 (4) | C24—C23—H23 | 126.5 |
C11—N3—C15 | 118.6 (5) | C25—C24—C29 | 118.0 (5) |
C11—N3—Cd1 | 121.7 (4) | C25—C24—C23 | 135.2 (5) |
C15—N3—Cd1 | 119.7 (4) | C29—C24—C23 | 106.8 (5) |
C20—N4—C16 | 118.5 (5) | C26—C25—C24 | 119.6 (6) |
C20—N4—Cd1 | 122.5 (4) | C26—C25—H25 | 120.2 |
C16—N4—Cd1 | 119.1 (4) | C24—C25—H25 | 120.2 |
C22—N5—C29 | 108.8 (4) | C25—C26—C27 | 121.1 (6) |
C22—N5—H5C | 125.6 | C25—C26—H26 | 119.4 |
C29—N5—H5C | 125.6 | C27—C26—H26 | 119.4 |
C32—N6—C39 | 109.0 (5) | C28—C27—C26 | 121.3 (6) |
C32—N6—H6C | 125.5 | C28—C27—H27 | 119.3 |
C39—N6—H6C | 125.5 | C26—C27—H27 | 119.3 |
C41—N7—C45 | 117.4 (6) | C27—C28—C29 | 117.7 (6) |
C21—O1—Cd1 | 119.1 (3) | C27—C28—H28 | 121.1 |
C31—O3—Cd1 | 84.5 (3) | C29—C28—H28 | 121.1 |
C31—O4—Cd1 | 99.5 (4) | N5—C29—C28 | 130.1 (5) |
H5A—O5—H5B | 114.5 | N5—C29—C24 | 107.7 (5) |
H6A—O6—H6B | 100.4 | C28—C29—C24 | 122.3 (5) |
N1—C1—C2 | 123.1 (6) | O4—C31—O3 | 123.7 (6) |
N1—C1—H1 | 118.4 | O4—C31—C32 | 118.5 (5) |
C2—C1—H1 | 118.4 | O3—C31—C32 | 117.7 (5) |
C1—C2—C3 | 118.5 (6) | N6—C32—C33 | 109.2 (5) |
C1—C2—H2 | 120.7 | N6—C32—C31 | 121.3 (5) |
C3—C2—H2 | 120.7 | C33—C32—C31 | 129.6 (5) |
C2—C3—C4 | 118.9 (6) | C32—C33—C34 | 107.4 (5) |
C2—C3—H3 | 120.6 | C32—C33—H33 | 126.3 |
C4—C3—H3 | 120.6 | C34—C33—H33 | 126.3 |
C5—C4—C3 | 119.9 (6) | C39—C34—C35 | 119.1 (6) |
C5—C4—H4 | 120.0 | C39—C34—C33 | 106.9 (5) |
C3—C4—H4 | 120.0 | C35—C34—C33 | 134.1 (6) |
N1—C5—C4 | 120.6 (6) | C36—C35—C34 | 118.5 (6) |
N1—C5—C6 | 117.1 (5) | C36—C35—H35 | 120.8 |
C4—C5—C6 | 122.3 (6) | C34—C35—H35 | 120.8 |
N2—C6—C7 | 121.1 (5) | C35—C36—C37 | 121.5 (6) |
N2—C6—C5 | 116.5 (5) | C35—C36—H36 | 119.3 |
C7—C6—C5 | 122.3 (5) | C37—C36—H36 | 119.3 |
C8—C7—C6 | 120.1 (6) | C38—C37—C36 | 122.0 (6) |
C8—C7—H7 | 119.9 | C38—C37—H37 | 119.0 |
C6—C7—H7 | 119.9 | C36—C37—H37 | 119.0 |
C9—C8—C7 | 118.9 (6) | C39—C38—C37 | 117.0 (6) |
C9—C8—H8 | 120.6 | C39—C38—H38 | 121.5 |
C7—C8—H8 | 120.6 | C37—C38—H38 | 121.5 |
C8—C9—C10 | 119.0 (6) | N6—C39—C38 | 130.4 (6) |
C8—C9—H9 | 120.5 | N6—C39—C34 | 107.6 (5) |
C10—C9—H9 | 120.5 | C38—C39—C34 | 122.0 (6) |
N2—C10—C9 | 122.7 (6) | N7—C41—C42 | 124.7 (7) |
N2—C10—H10 | 118.7 | N7—C41—H41 | 117.6 |
C9—C10—H10 | 118.7 | C42—C41—H41 | 117.6 |
N3—C11—C12 | 123.9 (6) | C43—C42—C41 | 117.8 (7) |
N3—C11—H11 | 118.1 | C43—C42—H42 | 121.1 |
C12—C11—H11 | 118.1 | C41—C42—H42 | 121.1 |
C13—C12—C11 | 117.8 (6) | C42—C43—C44 | 119.0 (6) |
C13—C12—H12 | 121.1 | C42—C43—H43 | 120.5 |
C11—C12—H12 | 121.1 | C44—C43—H43 | 120.5 |
C12—C13—C14 | 119.9 (6) | C43—C44—C45 | 120.2 (6) |
C12—C13—H13 | 120.1 | C43—C44—H44 | 119.9 |
C14—C13—H13 | 120.1 | C45—C44—H44 | 119.9 |
C13—C14—C15 | 119.5 (6) | N7—C45—C44 | 120.8 (6) |
C13—C14—H14 | 120.2 | N7—C45—C45i | 116.2 (6) |
C15—C14—H14 | 120.2 | C44—C45—C45i | 122.9 (7) |
Symmetry code: (i) −x, −y+2, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5C···O5ii | 0.86 | 2.09 | 2.892 (9) | 155 |
N6—H6C···O2iii | 0.86 | 2.00 | 2.801 (8) | 156 |
O5—H5A···O6 | 0.82 | 1.96 | 2.748 (8) | 161 |
O5—H5B···N7iv | 0.82 | 2.09 | 2.879 (8) | 161 |
O6—H6A···O5v | 0.82 | 2.01 | 2.781 (7) | 156 |
O6—H6B···O3vi | 0.82 | 1.95 | 2.778 (6) | 174 |
Symmetry codes: (ii) x, y−1, z; (iii) −x+1, −y, −z; (iv) x+1, y, z; (v) −x+1, −y+2, −z+1; (vi) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | [Cd(C9H6NO2)2(C10H8N2)2]·0.5C10H8N2·2H2O |
Mr | 859.19 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 290 |
a, b, c (Å) | 11.513 (2), 12.945 (3), 14.302 (3) |
α, β, γ (°) | 114.95 (3), 94.27 (3), 93.84 (3) |
V (Å3) | 1915.8 (9) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.63 |
Crystal size (mm) | 0.26 × 0.19 × 0.06 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.865, 0.963 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15180, 6724, 4444 |
Rint | 0.058 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.106, 1.17 |
No. of reflections | 6724 |
No. of parameters | 515 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.26, −1.55 |
Computer programs: RAPID-AUTO (Rigaku, 1998), CrystalStructure (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEPII (Johnson, 1976) and DIAMOND (Brandenburg & Putz, 2004).
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5C···O5i | 0.860 | 2.089 | 2.892 (9) | 155 |
N6—H6C···O2ii | 0.860 | 1.995 | 2.801 (8) | 156 |
O5—H5A···O6 | 0.820 | 1.961 | 2.748 (8) | 161 |
O5—H5B···N7iii | 0.820 | 2.090 | 2.879 (8) | 161 |
O6—H6A···O5iv | 0.820 | 2.009 | 2.781 (7) | 156 |
O6—H6B···O3v | 0.820 | 1.953 | 2.778 (6) | 174 |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, −y, −z; (iii) x+1, y, z; (iv) −x+1, −y+2, −z+1; (v) x, y+1, z. |
Acknowledgements
The authors gratefully acknowledge the financial support of the Education Office of Zhejiang province (grant No. 20051316) and the Scientific Research Fund of Ningbo University (grant No. XKL09078).
References
Brandenburg, K. & Putz, H. (2004). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
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The indole-2-carboxylic acid moiety is present in a great number of molecules with a broad spectrum of pharmacological activity, anticonvulsant, antihypertensive and antifungal properties. It has been found that the biological activities of the therapeutic agents are considerably increased when they are bonded into metal complex molecules (Dillon et al., 2003). Cadmium(II) ion with 1.10-phenanthroline and pyridine ligands can respectively form CdN4O4 dodecahedron and CdN4O3 polyhedron complex molecules (Lou & Zhang, 2007, Zhang et al., 2005). In this paper, we report synthesis and structure of a new cadium coordination complex with indole-2-formic acid and 2,2'-bipyridine ligands. The crystal structure of the title compound consists of one complex Cd(C10H8N2)2(C9H7NO2)2 molecule, one half uncoordinated 2,2'-bipyridine molecule and two lattice water molecules (Fig. 1). The uncoordinated 2,2'-bipyridine molecule placed in the center of symmetry (0, 1, 1/2 ). In the complex molecule, the CdII atom is coordinated by four N atoms from two 2,2'-bipyridine ligands, three O atoms from two 2-indolyl-formic acid anions ligands, completing a distorted CdN4O3 pentagonal bipyramid. The equatorial positions of the CdII ion are occupied by two carboxylate O atoms (O3, O4) and three N atoms (N2, N1, N3) from different 2,2'-bipyridine molecules, and the axial ones by the other one N atom (N4) and one carboxylate O atom (O1). The Cd1—N bond length is 2.364 (4) Å to 2.450 (5) Å, and Cd1—O bond lengths are 2.239 (4) Å and 2.653 (4) Å. In the crystal structure, classical O5—H5B···N6, N6—H6C···O2ii and O6—H6A···O5iv hydrogen bonding interactions (Table 1) form one-dimensional chains. The chains are connected with each other via intermolecular hydrogen bonds (N5—H5C···O5i, O6—H6A···O5iv) from adjacent chains to form a two-dimensional layer (Fig. 2). Furthermore, a three-dimensional network is formed via intermolecular forces between layers and hydrogen bonds (O6—H6A···O5iv). Symmetry codes: (i) x, y - 1, z; (ii) -x + 1, -y, -z; (iv) -x + 1, -y + 2, -z + 1.