organic compounds
Ethyl 6-methyl-2-sulfanylidene-4-[4-(trifluoromethyl)phenyl]-1,2,3,4-tetrahydropyrimidine-5-carboxylate
aSolid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore 560 012, India, bSchool of Chemistry, University of KwaZulu-Natal, Durban 4000, South Africa, and cSchool of Pharmacy and Pharmacology, University of Kwazulu-Natal, Durban 4000, South Africa
*Correspondence e-mail: nksusa@gmail.com, venugopala@ukzn.ac.za
The title compound, C15H15F3N2O2S, adopts a conformation with an intramolecular C—H⋯π interaction. The dihedral angles between the planes of the 4-(trifluoromethyl)phenyl and ester groups with the plane of the six-membered tetrahydropyrimidine ring are 81.8 (1) and 16.0 (1)°, respectively. In the intermolecular N—H⋯S hydrogen bonds link pairs of molecules into dimers and N—H⋯O interactions generate hydrogen-bonded molecular chains along the crystallographic a axis.
Related literature
For applications of multi-functionalized dihydropyrimidines, see: Jauk et al. (2000); Kappe (2000); Mayer et al. (1999). For structural analysis, see: Nayak et al. (2009, 2010).
Experimental
Crystal data
|
Refinement
|
Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin et al., 1993); software used to prepare material for publication: PLATON (Spek, 2009) and PARST (Nardelli, 1995).
Supporting information
10.1107/S1600536811019441/si2356sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811019441/si2356Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811019441/si2356Isup3.cml
A mixture of ethylacetoacetate (0.1 mol), 4-trifluoromethylbenzaldehyde (0.1 mol) and thiourea (0.11 mol) was refluxed in 50 ml of ethanol for 2 h in the presence of concentrated hydrochloric acid as a catalyst. The reaction was monitored with thin layer
and the reaction medium was quenched in ice cold water. The precipitate obtained was filtered, dried and crystallized from ethanol at room temperature to obtain the title compound.All H atoms were located from difference Fourier map and refined freely with C–H and N–H distances in the range between 0.80Å and 1.0 Å.
Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell
CrysAlis PRO (Oxford Diffraction, 2009); data reduction: CrysAlis PRO (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin et al., 1993); software used to prepare material for publication: PLATON (Spek, 2009) and PARST (Nardelli, 1995).C15H15F3N2O2S | Z = 2 |
Mr = 344.36 | F(000) = 356 |
Triclinic, P1 | Dx = 1.506 Mg m−3 |
Hall symbol: -P 1 | Melting point: 471(2) K |
a = 7.2682 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.3205 (2) Å | Cell parameters from 467 reflections |
c = 12.4779 (3) Å | θ = 1.0–27.9° |
α = 74.199 (2)° | µ = 0.26 mm−1 |
β = 88.092 (3)° | T = 120 K |
γ = 69.377 (3)° | Block, colorless |
V = 759.39 (5) Å3 | 0.28 × 0.22 × 0.17 mm |
Oxford Diffraction Xcalibur diffractometer with an Eos (Nova) detector | 2982 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 2670 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.034 |
Detector resolution: 16.0839 pixels mm-1 | θmax = 26.0°, θmin = 2.4° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −11→11 |
Tmin = 0.932, Tmax = 0.958 | l = −15→15 |
16986 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.032 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.085 | All H-atom parameters refined |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0385P)2 + 0.4675P] where P = (Fo2 + 2Fc2)/3 |
2982 reflections | (Δ/σ)max < 0.001 |
268 parameters | Δρmax = 0.33 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C15H15F3N2O2S | γ = 69.377 (3)° |
Mr = 344.36 | V = 759.39 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.2682 (3) Å | Mo Kα radiation |
b = 9.3205 (2) Å | µ = 0.26 mm−1 |
c = 12.4779 (3) Å | T = 120 K |
α = 74.199 (2)° | 0.28 × 0.22 × 0.17 mm |
β = 88.092 (3)° |
Oxford Diffraction Xcalibur diffractometer with an Eos (Nova) detector | 2982 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 2670 reflections with I > 2σ(I) |
Tmin = 0.932, Tmax = 0.958 | Rint = 0.034 |
16986 measured reflections |
R[F2 > 2σ(F2)] = 0.032 | 0 restraints |
wR(F2) = 0.085 | All H-atom parameters refined |
S = 1.05 | Δρmax = 0.33 e Å−3 |
2982 reflections | Δρmin = −0.26 e Å−3 |
268 parameters |
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.33.34d Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.30321 (6) | 0.90692 (5) | 0.45283 (3) | 0.01866 (12) | |
O2 | −0.02059 (15) | 0.41096 (13) | 0.28311 (9) | 0.0192 (2) | |
N2 | −0.01311 (19) | 0.83739 (15) | 0.42302 (10) | 0.0152 (3) | |
N1 | 0.2762 (2) | 0.67834 (15) | 0.37360 (10) | 0.0152 (3) | |
C3 | −0.0065 (2) | 0.61577 (17) | 0.35436 (12) | 0.0137 (3) | |
O1 | −0.28789 (15) | 0.54256 (13) | 0.35999 (9) | 0.0202 (2) | |
C9 | −0.2190 (2) | 0.89964 (17) | 0.25202 (12) | 0.0142 (3) | |
C4 | −0.1317 (2) | 0.77821 (17) | 0.36488 (12) | 0.0139 (3) | |
C5 | −0.1193 (2) | 0.52013 (17) | 0.33520 (12) | 0.0146 (3) | |
C14 | −0.1469 (2) | 0.87476 (19) | 0.15166 (13) | 0.0179 (3) | |
C1 | 0.1797 (2) | 0.80426 (17) | 0.41397 (12) | 0.0144 (3) | |
C2 | 0.1916 (2) | 0.57285 (17) | 0.35621 (12) | 0.0139 (3) | |
F3 | −0.42949 (18) | 1.20109 (14) | −0.14515 (8) | 0.0412 (3) | |
C6 | −0.1217 (2) | 0.31314 (19) | 0.25754 (14) | 0.0189 (3) | |
C10 | −0.3740 (2) | 1.04101 (18) | 0.25052 (13) | 0.0170 (3) | |
F2 | −0.64945 (16) | 1.33939 (13) | −0.05806 (9) | 0.0389 (3) | |
C11 | −0.4529 (2) | 1.15589 (19) | 0.15063 (13) | 0.0199 (3) | |
C13 | −0.2264 (2) | 0.98893 (19) | 0.05111 (13) | 0.0202 (3) | |
C8 | 0.3400 (2) | 0.42067 (19) | 0.34389 (15) | 0.0196 (3) | |
C12 | −0.3786 (2) | 1.12940 (19) | 0.05093 (13) | 0.0198 (3) | |
C7 | 0.0075 (3) | 0.2226 (2) | 0.18351 (16) | 0.0249 (4) | |
F1 | −0.3667 (2) | 1.36503 (15) | −0.07403 (10) | 0.0514 (4) | |
C15 | −0.4567 (3) | 1.2573 (2) | −0.05606 (14) | 0.0280 (4) | |
H4 | −0.246 (2) | 0.7766 (19) | 0.4098 (13) | 0.010 (4)* | |
H2N | −0.075 (3) | 0.907 (2) | 0.4538 (15) | 0.016 (4)* | |
H1N | 0.393 (3) | 0.652 (2) | 0.3721 (16) | 0.024 (5)* | |
H10 | −0.424 (3) | 1.059 (2) | 0.3189 (15) | 0.016 (4)* | |
H6B | −0.139 (3) | 0.241 (2) | 0.3277 (15) | 0.016 (4)* | |
H14 | −0.045 (3) | 0.779 (2) | 0.1506 (15) | 0.023 (5)* | |
H13 | −0.179 (3) | 0.971 (2) | −0.0173 (16) | 0.024 (5)* | |
H6A | −0.251 (3) | 0.384 (2) | 0.2200 (16) | 0.025 (5)* | |
H11 | −0.557 (3) | 1.253 (2) | 0.1503 (16) | 0.026 (5)* | |
H7A | 0.021 (3) | 0.296 (3) | 0.1166 (18) | 0.034 (5)* | |
H7B | −0.054 (3) | 0.152 (2) | 0.1647 (17) | 0.035 (5)* | |
H7C | 0.132 (3) | 0.156 (3) | 0.2222 (18) | 0.037 (6)* | |
H8B | 0.292 (3) | 0.332 (3) | 0.3678 (17) | 0.037 (6)* | |
H8C | 0.456 (3) | 0.395 (3) | 0.3874 (19) | 0.042 (6)* | |
H8A | 0.367 (3) | 0.431 (3) | 0.265 (2) | 0.049 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0165 (2) | 0.0207 (2) | 0.0237 (2) | −0.00844 (16) | 0.00304 (15) | −0.01173 (16) |
O2 | 0.0148 (5) | 0.0196 (6) | 0.0303 (6) | −0.0092 (5) | 0.0051 (4) | −0.0143 (5) |
N2 | 0.0131 (6) | 0.0161 (6) | 0.0180 (6) | −0.0042 (5) | 0.0007 (5) | −0.0088 (5) |
N1 | 0.0104 (7) | 0.0178 (6) | 0.0199 (6) | −0.0062 (5) | 0.0035 (5) | −0.0080 (5) |
C3 | 0.0144 (7) | 0.0134 (7) | 0.0133 (7) | −0.0049 (6) | 0.0012 (5) | −0.0038 (5) |
O1 | 0.0127 (6) | 0.0223 (6) | 0.0293 (6) | −0.0079 (5) | 0.0048 (4) | −0.0114 (5) |
C9 | 0.0124 (7) | 0.0151 (7) | 0.0175 (7) | −0.0074 (6) | 0.0006 (6) | −0.0052 (6) |
C4 | 0.0125 (7) | 0.0162 (7) | 0.0154 (7) | −0.0061 (6) | 0.0027 (6) | −0.0072 (6) |
C5 | 0.0141 (7) | 0.0128 (7) | 0.0147 (7) | −0.0032 (6) | −0.0009 (6) | −0.0023 (5) |
C14 | 0.0161 (8) | 0.0186 (8) | 0.0205 (8) | −0.0053 (6) | 0.0023 (6) | −0.0089 (6) |
C1 | 0.0162 (7) | 0.0156 (7) | 0.0113 (7) | −0.0061 (6) | 0.0016 (5) | −0.0030 (5) |
C2 | 0.0156 (7) | 0.0141 (7) | 0.0124 (7) | −0.0061 (6) | 0.0011 (5) | −0.0032 (5) |
F3 | 0.0453 (7) | 0.0503 (7) | 0.0175 (5) | −0.0100 (6) | −0.0023 (5) | −0.0018 (5) |
C6 | 0.0178 (8) | 0.0185 (8) | 0.0255 (8) | −0.0103 (7) | 0.0016 (6) | −0.0089 (7) |
C10 | 0.0144 (7) | 0.0193 (8) | 0.0193 (8) | −0.0063 (6) | 0.0044 (6) | −0.0084 (6) |
F2 | 0.0303 (6) | 0.0363 (6) | 0.0314 (6) | 0.0008 (5) | −0.0071 (5) | 0.0045 (5) |
C11 | 0.0156 (8) | 0.0165 (8) | 0.0253 (8) | −0.0040 (6) | 0.0003 (6) | −0.0043 (6) |
C13 | 0.0219 (8) | 0.0254 (8) | 0.0166 (7) | −0.0109 (7) | 0.0042 (6) | −0.0081 (6) |
C8 | 0.0135 (8) | 0.0174 (8) | 0.0287 (9) | −0.0043 (6) | 0.0014 (7) | −0.0092 (7) |
C12 | 0.0176 (8) | 0.0220 (8) | 0.0201 (8) | −0.0092 (6) | −0.0020 (6) | −0.0031 (6) |
C7 | 0.0233 (9) | 0.0267 (9) | 0.0333 (10) | −0.0137 (8) | 0.0069 (7) | −0.0166 (8) |
F1 | 0.0618 (9) | 0.0444 (7) | 0.0454 (7) | −0.0363 (7) | −0.0147 (6) | 0.0168 (6) |
C15 | 0.0277 (9) | 0.0293 (9) | 0.0243 (9) | −0.0120 (8) | −0.0022 (7) | −0.0005 (7) |
S1—C1 | 1.6863 (15) | F3—C15 | 1.334 (2) |
O2—C5 | 1.3369 (18) | C6—C7 | 1.502 (2) |
O2—C6 | 1.4557 (18) | C6—H6B | 0.982 (18) |
N2—C1 | 1.3323 (19) | C6—H6A | 0.98 (2) |
N2—C4 | 1.4725 (18) | C10—C11 | 1.385 (2) |
N2—H2N | 0.829 (19) | C10—H10 | 0.949 (18) |
N1—C1 | 1.3572 (19) | F2—C15 | 1.336 (2) |
N1—C2 | 1.3940 (19) | C11—C12 | 1.389 (2) |
N1—H1N | 0.80 (2) | C11—H11 | 0.95 (2) |
C3—C2 | 1.351 (2) | C13—C12 | 1.384 (2) |
C3—C5 | 1.472 (2) | C13—H13 | 0.946 (19) |
C3—C4 | 1.506 (2) | C8—H8B | 0.98 (2) |
O1—C5 | 1.2128 (18) | C8—H8C | 0.94 (2) |
C9—C14 | 1.388 (2) | C8—H8A | 0.99 (2) |
C9—C10 | 1.396 (2) | C12—C15 | 1.494 (2) |
C9—C4 | 1.534 (2) | C7—H7A | 0.95 (2) |
C4—H4 | 0.988 (17) | C7—H7B | 1.00 (2) |
C14—C13 | 1.389 (2) | C7—H7C | 0.95 (2) |
C14—H14 | 0.941 (19) | F1—C15 | 1.348 (2) |
C2—C8 | 1.493 (2) | ||
C5—O2—C6 | 117.51 (12) | O2—C6—H6A | 108.1 (11) |
C1—N2—C4 | 123.64 (13) | C7—C6—H6A | 112.1 (11) |
C1—N2—H2N | 119.0 (13) | H6B—C6—H6A | 109.9 (15) |
C4—N2—H2N | 116.5 (13) | C11—C10—C9 | 120.59 (14) |
C1—N1—C2 | 123.78 (13) | C11—C10—H10 | 120.0 (10) |
C1—N1—H1N | 118.1 (14) | C9—C10—H10 | 119.4 (10) |
C2—N1—H1N | 116.8 (14) | C10—C11—C12 | 119.70 (15) |
C2—C3—C5 | 125.59 (13) | C10—C11—H11 | 120.2 (12) |
C2—C3—C4 | 119.99 (13) | C12—C11—H11 | 120.1 (11) |
C5—C3—C4 | 114.30 (12) | C12—C13—C14 | 119.71 (15) |
C14—C9—C10 | 118.99 (14) | C12—C13—H13 | 119.8 (11) |
C14—C9—C4 | 122.22 (13) | C14—C13—H13 | 120.5 (11) |
C10—C9—C4 | 118.79 (13) | C2—C8—H8B | 111.7 (12) |
N2—C4—C3 | 109.18 (12) | C2—C8—H8C | 109.6 (13) |
N2—C4—C9 | 109.86 (11) | H8B—C8—H8C | 108.3 (18) |
C3—C4—C9 | 113.06 (12) | C2—C8—H8A | 110.1 (14) |
N2—C4—H4 | 106.2 (9) | H8B—C8—H8A | 106.3 (18) |
C3—C4—H4 | 112.9 (9) | H8C—C8—H8A | 110.7 (19) |
C9—C4—H4 | 105.4 (9) | C13—C12—C11 | 120.31 (15) |
O1—C5—O2 | 123.28 (13) | C13—C12—C15 | 120.14 (15) |
O1—C5—C3 | 123.34 (13) | C11—C12—C15 | 119.47 (15) |
O2—C5—C3 | 113.31 (12) | C6—C7—H7A | 109.3 (12) |
C9—C14—C13 | 120.70 (15) | C6—C7—H7B | 109.3 (12) |
C9—C14—H14 | 120.4 (11) | H7A—C7—H7B | 109.4 (17) |
C13—C14—H14 | 118.9 (11) | C6—C7—H7C | 109.8 (13) |
N2—C1—N1 | 116.24 (13) | H7A—C7—H7C | 111.7 (18) |
N2—C1—S1 | 123.24 (11) | H7B—C7—H7C | 107.3 (17) |
N1—C1—S1 | 120.50 (11) | F3—C15—F2 | 106.80 (14) |
C3—C2—N1 | 118.64 (13) | F3—C15—F1 | 106.00 (15) |
C3—C2—C8 | 128.19 (14) | F2—C15—F1 | 106.29 (15) |
N1—C2—C8 | 113.16 (13) | F3—C15—C12 | 112.93 (15) |
O2—C6—C7 | 106.10 (12) | F2—C15—C12 | 112.89 (14) |
O2—C6—H6B | 108.8 (10) | F1—C15—C12 | 111.43 (14) |
C7—C6—H6B | 111.6 (10) | ||
C1—N2—C4—C3 | 32.85 (18) | C5—C3—C2—N1 | 178.91 (13) |
C1—N2—C4—C9 | −91.67 (16) | C4—C3—C2—N1 | 3.2 (2) |
C2—C3—C4—N2 | −24.38 (18) | C5—C3—C2—C8 | −2.4 (2) |
C5—C3—C4—N2 | 159.44 (12) | C4—C3—C2—C8 | −178.11 (14) |
C2—C3—C4—C9 | 98.24 (16) | C1—N1—C2—C3 | 15.8 (2) |
C5—C3—C4—C9 | −77.94 (15) | C1—N1—C2—C8 | −163.11 (14) |
C14—C9—C4—N2 | 105.73 (15) | C5—O2—C6—C7 | 170.73 (13) |
C10—C9—C4—N2 | −73.24 (16) | C14—C9—C10—C11 | −1.0 (2) |
C14—C9—C4—C3 | −16.51 (19) | C4—C9—C10—C11 | 177.99 (13) |
C10—C9—C4—C3 | 164.51 (13) | C9—C10—C11—C12 | 0.8 (2) |
C6—O2—C5—O1 | −1.3 (2) | C9—C14—C13—C12 | 0.3 (2) |
C6—O2—C5—C3 | −178.35 (12) | C14—C13—C12—C11 | −0.5 (2) |
C2—C3—C5—O1 | 161.70 (15) | C14—C13—C12—C15 | 176.18 (15) |
C4—C3—C5—O1 | −22.4 (2) | C10—C11—C12—C13 | 0.0 (2) |
C2—C3—C5—O2 | −21.2 (2) | C10—C11—C12—C15 | −176.74 (15) |
C4—C3—C5—O2 | 154.72 (12) | C13—C12—C15—F3 | 25.8 (2) |
C10—C9—C14—C13 | 0.5 (2) | C11—C12—C15—F3 | −157.42 (15) |
C4—C9—C14—C13 | −178.50 (13) | C13—C12—C15—F2 | 147.12 (15) |
C4—N2—C1—N1 | −17.6 (2) | C11—C12—C15—F2 | −36.1 (2) |
C4—N2—C1—S1 | 163.99 (11) | C13—C12—C15—F1 | −93.35 (19) |
C2—N1—C1—N2 | −8.8 (2) | C11—C12—C15—F1 | 83.40 (19) |
C2—N1—C1—S1 | 169.61 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.80 (2) | 2.20 (2) | 2.9868 (19) | 169.8 (18) |
N2—H2N···S1ii | 0.830 (19) | 2.462 (19) | 3.2830 (14) | 170 (2) |
C14—H14···Cg1 | 0.94 (2) | 2.655 (2) | 3.129 (2) | 112 |
Symmetry codes: (i) x+1, y, z; (ii) −x, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C15H15F3N2O2S |
Mr | 344.36 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 120 |
a, b, c (Å) | 7.2682 (3), 9.3205 (2), 12.4779 (3) |
α, β, γ (°) | 74.199 (2), 88.092 (3), 69.377 (3) |
V (Å3) | 759.39 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.28 × 0.22 × 0.17 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur diffractometer with an Eos (Nova) detector |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.932, 0.958 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16986, 2982, 2670 |
Rint | 0.034 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.085, 1.05 |
No. of reflections | 2982 |
No. of parameters | 268 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.33, −0.26 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin et al., 1993), PLATON (Spek, 2009) and PARST (Nardelli, 1995).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.80 (2) | 2.20 (2) | 2.9868 (19) | 169.8 (18) |
N2—H2N···S1ii | 0.830 (19) | 2.462 (19) | 3.2830 (14) | 170 (2) |
C14—H14···Cg1 | 0.94 (2) | 2.655 (2) | 3.129 (2) | 112 |
Symmetry codes: (i) x+1, y, z; (ii) −x, −y+2, −z+1. |
Acknowledgements
We acknowledge funding under the DST–FIST program (Level II) for the Oxford Diffraction facility at SSCU, IISc. SKN thanks the DST, India, for a research associate fellowship and KNV is grateful to the University of KwaZulu-Natal, South Africa, for a post-doctoral fellowship.
References
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Jauk, B., Pernat, T. & Kappe, C. O. (2000). Molecules, 5, 227–239. Web of Science CrossRef CAS Google Scholar
Kappe, C. O. (2000). Eur. J. Med. Chem. 35, 1043–1052. Web of Science CrossRef PubMed CAS Google Scholar
Mayer, T. U., Kapoor, T. M., Haggarty, S. J., King, R. W., Schreiber, S. I. & Mitchison, T. J. (1999). Science, 286, 971–974. Web of Science CrossRef PubMed CAS Google Scholar
Nardelli, M. (1995). J. Appl. Cryst. 28, 659. CrossRef IUCr Journals Google Scholar
Nayak, S. K., Venugopala, K. N., Chopra, D., Govender, T., Kruger, H. G., Maguire, G. E. M. & Guru Row, T. N. (2009). Acta Cryst. E65, o2518. Web of Science CSD CrossRef IUCr Journals Google Scholar
Nayak, S. K., Venugopala, K. N., Chopra, D., Vasu & Guru Row, T. N. (2010). CrystEngComm, 12, 1205–1216. Google Scholar
Oxford Diffraction (2009). CrysAlis CCD and CrysAlis PRO RED. Oxford Diffraction Ltd, Yarnton, England. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Watkin, D. M., Pearce, L. & Prout, C. K. (1993). CAMERON. Chemical Crystallography Laboratory, University of Oxford, England. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The synthesis of multifunctionlized dihydropyrimidone (DHPM) compounds was first reported by the Italian chemist Pietro Biginelli in 1893 (Kappe, 2000 and references therein). DHPMs have emerged as important target molecules because of their therapeutic and pharmacological properties such as anticarcinogenic (Kappe, 2000; Mayer et al., 1999) and calcium channel modulators (Jauk et al., 2000 and references therein). We have been working on this DHPMS system in view of the immense range of applications (Nayak et al.,2009; 2010). Here, we are reporting the single-crystal structure of the title compound.
The conformation of the molecule is controlled by an intra-molecular C—H···π interaction (2.655 (2) Å, Table 1) wherein the aryl hydrogen H14 is oriented towards the π electrons corresponding to the C2═C3 double bond (Fig. 1). The dihedral angles between the planes of 4-trifluoromethylphenyl and ester groups (O1/C5/O2/C6/C7) with the plane of the six-membered tetrahydropyrimidine ring are 81.8 (1)° and 16.0 (1)°, respectively. The crystal structure is mainly stabilized by hydrogen bonds of centrosymmetric N—H···S dimers and N—H···O molecular chains along the crystallographic a axis (Fig. 2). The molecules are arranged as polar and hyrophobic sheets with the spacer distances of 4.673 (2)Å and 8.359 (2) Å, respectively as briefly explained in literature (Fig. 3, Nayak et al., 2009; 2010).