metal-organic compounds
6-Phenyl-6,7-dihydrodibenzo[c,f][1,5]azabismocin-12(5H)-yl perchlorate
aCollege of Environment Protection and Safety Engineering, University of South China, Hengyang 421001, People's Republic of China, and bKey Laboratory of Pollution Control and Resource Use of Hunan Province, University of South China, Hengyang 421001, People's Republic of China
*Correspondence e-mail: shawn_zhang@sina.com
In the title compound, [Bi(C20H17N)(ClO4)] or C20H17BiClNO4, the BiIII ion assumes a distorted ψ trigonal–bipyramidal geometry, with two C atoms and the electron lone pair of the Bi atom at the equatorial positions and an amine N atom and a perchlorate O atom at the apical positions. Weak intermolecular C—H⋯O hydrogen bonding is present in the crystal structure.
Related literature
For the synthesis of 12-chloro-6-phenyl-5,6,7,12-tetrahydrodibenzo[c,f][1,5]azabismocine, see: Zhang et al. (2009). For general background, see: Shimada et al. (2004); Yin et al. (2008); Zhang et al. (2010); Tan & Zhang (2011). For related structures, see: Ohkata et al. (1989); Minoura et al. (1999).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811021039/xu5208sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811021039/xu5208Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811021039/xu5208Isup3.cml
The following procedures are recommended for synthesis of the title compound (I): 12-chloro-6-phenyl-5,6,7,12-tetrahydrodibenzo[c,f][1,5]azabismocine (0.516 g, 1.0 mmol) was dissolved in 15 ml THF, then a solution of AgClO4 (0.207 g, 1.0 mmol) in 15.0 ml THF was added. After the mixture was stirred in the dark at room temperature for 2 h, it was filtered. The filtrate mixed with 1.0 ml hexane was refrigerated for 24 h, giving colorless crystals (0.539 g, 93.0%).
All H atoms were positioned geometrically and refined using a riding model, with C-H = 0.93 Å for aryl, 0.98 Å methine and 0.97 Å for methylene H atoms, respectively. Uiso(H)= 1.2Ueq(C) for all H atoms.
Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound with atomic numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. All hydrogen atoms are omitted for clarity. |
[Bi(C20H17N)(ClO4)] | F(000) = 1104 |
Mr = 579.78 | Dx = 2.067 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2936 reflections |
a = 12.0635 (10) Å | θ = 2.7–24.2° |
b = 14.0755 (12) Å | µ = 9.63 mm−1 |
c = 11.5121 (10) Å | T = 293 K |
β = 107.590 (2)° | Prismatic, colorless |
V = 1863.4 (3) Å3 | 0.32 × 0.21 × 0.20 mm |
Z = 4 |
Bruker SMART 1000 CCD area-detector diffractometer | 3279 independent reflections |
Radiation source: fine-focus sealed tube | 2585 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.166 |
ϕ and ω scans | θmax = 25.0°, θmin = 1.8° |
Absorption correction: empirical (using intensity measurements) (SADABS; Bruker, 2001) | h = −10→14 |
Tmin = 0.100, Tmax = 0.145 | k = −13→16 |
9267 measured reflections | l = −13→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.065 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.163 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0816P)2] where P = (Fo2 + 2Fc2)/3 |
3279 reflections | (Δ/σ)max = 0.001 |
244 parameters | Δρmax = 4.89 e Å−3 |
0 restraints | Δρmin = −4.14 e Å−3 |
[Bi(C20H17N)(ClO4)] | V = 1863.4 (3) Å3 |
Mr = 579.78 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.0635 (10) Å | µ = 9.63 mm−1 |
b = 14.0755 (12) Å | T = 293 K |
c = 11.5121 (10) Å | 0.32 × 0.21 × 0.20 mm |
β = 107.590 (2)° |
Bruker SMART 1000 CCD area-detector diffractometer | 3279 independent reflections |
Absorption correction: empirical (using intensity measurements) (SADABS; Bruker, 2001) | 2585 reflections with I > 2σ(I) |
Tmin = 0.100, Tmax = 0.145 | Rint = 0.166 |
9267 measured reflections |
R[F2 > 2σ(F2)] = 0.065 | 0 restraints |
wR(F2) = 0.163 | H-atom parameters constrained |
S = 1.02 | Δρmax = 4.89 e Å−3 |
3279 reflections | Δρmin = −4.14 e Å−3 |
244 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Bi | 0.74646 (4) | 0.77309 (3) | 0.84604 (4) | 0.0321 (2) | |
Cl1 | 0.7240 (3) | 1.0213 (2) | 0.8825 (3) | 0.0378 (7) | |
N1 | 0.7225 (7) | 0.6171 (8) | 0.7606 (7) | 0.033 (2) | |
O1 | 0.7940 (9) | 0.9494 (7) | 0.8480 (10) | 0.063 (3) | |
O2 | 0.6291 (9) | 0.9730 (7) | 0.9075 (10) | 0.069 (3) | |
O3 | 0.6836 (10) | 1.0854 (8) | 0.7850 (10) | 0.071 (3) | |
O4 | 0.7937 (12) | 1.0687 (8) | 0.9874 (10) | 0.086 (4) | |
C1 | 0.6226 (11) | 0.7895 (8) | 0.6574 (11) | 0.037 (3) | |
C2 | 0.6002 (10) | 0.8714 (8) | 0.5878 (10) | 0.034 (3) | |
H2 | 0.6373 | 0.9281 | 0.6181 | 0.041* | |
C3 | 0.5204 (11) | 0.8671 (9) | 0.4706 (11) | 0.041 (3) | |
H3 | 0.5026 | 0.9222 | 0.4241 | 0.049* | |
C4 | 0.4688 (12) | 0.7846 (8) | 0.4240 (12) | 0.042 (3) | |
H4 | 0.4163 | 0.7830 | 0.3459 | 0.051* | |
C5 | 0.4949 (11) | 0.7005 (9) | 0.4943 (11) | 0.037 (3) | |
H5 | 0.4603 | 0.6435 | 0.4617 | 0.045* | |
C6 | 0.5695 (10) | 0.7026 (9) | 0.6080 (10) | 0.033 (3) | |
C7 | 0.5996 (10) | 0.6133 (8) | 0.6827 (9) | 0.031 (3) | |
H7A | 0.5489 | 0.6068 | 0.7335 | 0.037* | |
H7B | 0.5881 | 0.5586 | 0.6292 | 0.037* | |
C8 | 0.8978 (11) | 0.7594 (8) | 0.7776 (11) | 0.030 (3) | |
C9 | 0.9896 (11) | 0.8252 (10) | 0.7942 (12) | 0.047 (3) | |
H9 | 0.9914 | 0.8787 | 0.8421 | 0.056* | |
C10 | 1.0741 (11) | 0.8122 (10) | 0.7424 (14) | 0.051 (4) | |
H10 | 1.1337 | 0.8565 | 0.7542 | 0.062* | |
C11 | 1.0723 (14) | 0.7321 (10) | 0.6709 (16) | 0.055 (4) | |
H11 | 1.1291 | 0.7246 | 0.6321 | 0.066* | |
C12 | 0.9893 (10) | 0.6651 (9) | 0.6570 (11) | 0.038 (3) | |
H12 | 0.9919 | 0.6101 | 0.6132 | 0.045* | |
C13 | 0.8986 (9) | 0.6785 (8) | 0.7091 (9) | 0.030 (2) | |
C14 | 0.8015 (10) | 0.6065 (8) | 0.6812 (10) | 0.033 (3) | |
H14A | 0.8350 | 0.5433 | 0.6923 | 0.040* | |
H14B | 0.7555 | 0.6128 | 0.5965 | 0.040* | |
C15 | 0.7472 (9) | 0.5399 (9) | 0.8534 (10) | 0.033 (3) | |
C16 | 0.6852 (11) | 0.4552 (9) | 0.8367 (12) | 0.041 (3) | |
H16 | 0.6240 | 0.4455 | 0.7659 | 0.049* | |
C17 | 0.7139 (13) | 0.3865 (10) | 0.9238 (14) | 0.053 (4) | |
H17 | 0.6723 | 0.3298 | 0.9117 | 0.064* | |
C18 | 0.8062 (14) | 0.4002 (11) | 1.0325 (14) | 0.058 (4) | |
H18 | 0.8251 | 0.3532 | 1.0919 | 0.069* | |
C19 | 0.8671 (14) | 0.4831 (12) | 1.0489 (13) | 0.064 (4) | |
H19 | 0.9281 | 0.4920 | 1.1202 | 0.077* | |
C20 | 0.8408 (11) | 0.5534 (11) | 0.9634 (11) | 0.050 (3) | |
H20 | 0.8833 | 0.6097 | 0.9763 | 0.060* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Bi | 0.0313 (3) | 0.0438 (3) | 0.0201 (3) | 0.00040 (18) | 0.0062 (2) | −0.00470 (18) |
Cl1 | 0.0407 (17) | 0.0414 (16) | 0.0248 (14) | 0.0024 (13) | 0.0001 (12) | 0.0037 (13) |
N1 | 0.018 (5) | 0.070 (7) | 0.007 (4) | 0.002 (4) | −0.001 (4) | 0.001 (4) |
O1 | 0.047 (6) | 0.064 (7) | 0.079 (8) | 0.005 (5) | 0.020 (5) | −0.009 (6) |
O2 | 0.054 (6) | 0.076 (7) | 0.086 (8) | 0.001 (5) | 0.036 (6) | 0.026 (6) |
O3 | 0.082 (8) | 0.065 (7) | 0.059 (7) | 0.000 (6) | 0.008 (6) | 0.034 (6) |
O4 | 0.122 (11) | 0.076 (8) | 0.035 (6) | −0.017 (7) | −0.015 (6) | −0.011 (6) |
C1 | 0.038 (7) | 0.045 (7) | 0.033 (7) | 0.005 (5) | 0.016 (6) | −0.005 (6) |
C2 | 0.041 (7) | 0.038 (6) | 0.025 (6) | 0.005 (5) | 0.012 (5) | 0.003 (5) |
C3 | 0.043 (7) | 0.053 (8) | 0.032 (7) | 0.013 (6) | 0.019 (6) | 0.013 (6) |
C4 | 0.044 (8) | 0.049 (8) | 0.030 (7) | 0.006 (6) | 0.006 (6) | −0.004 (6) |
C5 | 0.034 (7) | 0.050 (8) | 0.022 (6) | 0.002 (5) | −0.002 (5) | −0.008 (5) |
C6 | 0.021 (6) | 0.054 (7) | 0.025 (6) | 0.000 (5) | 0.006 (5) | 0.007 (5) |
C7 | 0.033 (6) | 0.036 (6) | 0.020 (5) | −0.006 (5) | 0.003 (5) | 0.004 (5) |
C8 | 0.030 (7) | 0.038 (6) | 0.027 (6) | 0.001 (5) | 0.015 (5) | 0.003 (5) |
C9 | 0.045 (8) | 0.045 (8) | 0.048 (8) | −0.013 (6) | 0.010 (6) | −0.015 (7) |
C10 | 0.031 (7) | 0.058 (8) | 0.066 (9) | −0.013 (6) | 0.015 (7) | 0.005 (8) |
C11 | 0.051 (10) | 0.066 (10) | 0.058 (10) | 0.007 (7) | 0.030 (8) | 0.012 (8) |
C12 | 0.035 (7) | 0.046 (7) | 0.034 (6) | 0.004 (5) | 0.012 (5) | −0.003 (6) |
C13 | 0.031 (6) | 0.039 (6) | 0.020 (5) | 0.002 (5) | 0.006 (5) | 0.003 (5) |
C14 | 0.034 (6) | 0.042 (7) | 0.026 (6) | −0.001 (5) | 0.014 (5) | −0.003 (5) |
C15 | 0.036 (7) | 0.036 (7) | 0.030 (6) | 0.004 (5) | 0.015 (5) | 0.006 (5) |
C16 | 0.038 (7) | 0.045 (8) | 0.039 (7) | 0.005 (6) | 0.010 (6) | 0.010 (6) |
C17 | 0.059 (9) | 0.045 (8) | 0.063 (9) | 0.005 (7) | 0.029 (8) | 0.020 (7) |
C18 | 0.066 (10) | 0.063 (10) | 0.050 (9) | 0.020 (8) | 0.026 (8) | 0.024 (8) |
C19 | 0.061 (10) | 0.083 (12) | 0.041 (8) | 0.011 (9) | 0.005 (7) | 0.018 (8) |
C20 | 0.042 (8) | 0.069 (10) | 0.027 (7) | 0.000 (7) | −0.007 (6) | 0.004 (7) |
Bi—N1 | 2.387 (10) | C8—C13 | 1.387 (17) |
Bi—O1 | 2.546 (10) | C8—C9 | 1.411 (17) |
Bi—C1 | 2.245 (13) | C9—C10 | 1.340 (18) |
Bi—C8 | 2.204 (12) | C9—H9 | 0.9300 |
Cl1—O3 | 1.407 (10) | C10—C11 | 1.39 (2) |
Cl1—O4 | 1.413 (10) | C10—H10 | 0.9300 |
Cl1—O2 | 1.434 (10) | C11—C12 | 1.349 (19) |
Cl1—O1 | 1.448 (10) | C11—H11 | 0.9300 |
N1—C7 | 1.484 (13) | C12—C13 | 1.410 (16) |
N1—C15 | 1.490 (15) | C12—H12 | 0.9300 |
N1—C14 | 1.514 (12) | C13—C14 | 1.508 (15) |
C1—C2 | 1.383 (16) | C14—H14A | 0.9700 |
C1—C6 | 1.418 (17) | C14—H14B | 0.9700 |
C2—C3 | 1.402 (17) | C15—C16 | 1.389 (18) |
C2—H2 | 0.9300 | C15—C20 | 1.432 (16) |
C3—C4 | 1.351 (18) | C16—C17 | 1.360 (18) |
C3—H3 | 0.9300 | C16—H16 | 0.9300 |
C4—C5 | 1.414 (18) | C17—C18 | 1.41 (2) |
C4—H4 | 0.9300 | C17—H17 | 0.9300 |
C5—C6 | 1.347 (16) | C18—C19 | 1.36 (2) |
C5—H5 | 0.9300 | C18—H18 | 0.9300 |
C6—C7 | 1.504 (16) | C19—C20 | 1.365 (19) |
C7—H7A | 0.9700 | C19—H19 | 0.9300 |
C7—H7B | 0.9700 | C20—H20 | 0.9300 |
C8—Bi—C1 | 92.5 (5) | C13—C8—C9 | 118.4 (11) |
C8—Bi—N1 | 77.4 (4) | C13—C8—Bi | 115.1 (8) |
C1—Bi—N1 | 74.6 (4) | C9—C8—Bi | 126.5 (9) |
C8—Bi—O1 | 83.1 (4) | C10—C9—C8 | 121.5 (13) |
C1—Bi—O1 | 89.4 (4) | C10—C9—H9 | 119.3 |
N1—Bi—O1 | 154.0 (3) | C8—C9—H9 | 119.3 |
O3—Cl1—O4 | 110.7 (7) | C9—C10—C11 | 119.7 (13) |
O3—Cl1—O2 | 111.0 (7) | C9—C10—H10 | 120.2 |
O4—Cl1—O2 | 110.9 (7) | C11—C10—H10 | 120.2 |
O3—Cl1—O1 | 108.6 (7) | C12—C11—C10 | 120.9 (13) |
O4—Cl1—O1 | 108.6 (8) | C12—C11—H11 | 119.5 |
O2—Cl1—O1 | 106.9 (6) | C10—C11—H11 | 119.5 |
C7—N1—C15 | 110.7 (9) | C11—C12—C13 | 120.0 (12) |
C7—N1—C14 | 109.2 (8) | C11—C12—H12 | 120.0 |
C15—N1—C14 | 109.6 (8) | C13—C12—H12 | 120.0 |
C7—N1—Bi | 104.8 (7) | C8—C13—C12 | 119.4 (11) |
C15—N1—Bi | 113.7 (6) | C8—C13—C14 | 122.3 (10) |
C14—N1—Bi | 108.6 (7) | C12—C13—C14 | 118.2 (10) |
Cl1—O1—Bi | 122.3 (6) | C13—C14—N1 | 113.3 (9) |
C2—C1—C6 | 120.1 (12) | C13—C14—H14A | 108.9 |
C2—C1—Bi | 127.1 (9) | N1—C14—H14A | 108.9 |
C6—C1—Bi | 112.7 (8) | C13—C14—H14B | 108.9 |
C1—C2—C3 | 118.6 (12) | N1—C14—H14B | 108.9 |
C1—C2—H2 | 120.7 | H14A—C14—H14B | 107.7 |
C3—C2—H2 | 120.7 | C16—C15—C20 | 119.0 (11) |
C4—C3—C2 | 121.3 (12) | C16—C15—N1 | 123.0 (10) |
C4—C3—H3 | 119.4 | C20—C15—N1 | 118.0 (11) |
C2—C3—H3 | 119.4 | C17—C16—C15 | 120.1 (13) |
C3—C4—C5 | 119.8 (13) | C17—C16—H16 | 119.9 |
C3—C4—H4 | 120.1 | C15—C16—H16 | 119.9 |
C5—C4—H4 | 120.1 | C16—C17—C18 | 120.8 (14) |
C6—C5—C4 | 120.4 (12) | C16—C17—H17 | 119.6 |
C6—C5—H5 | 119.8 | C18—C17—H17 | 119.6 |
C4—C5—H5 | 119.8 | C19—C18—C17 | 119.2 (13) |
C5—C6—C1 | 119.8 (12) | C19—C18—H18 | 120.4 |
C5—C6—C7 | 120.9 (11) | C17—C18—H18 | 120.4 |
C1—C6—C7 | 119.3 (11) | C18—C19—C20 | 121.6 (15) |
N1—C7—C6 | 109.9 (9) | C18—C19—H19 | 119.2 |
N1—C7—H7A | 109.7 | C20—C19—H19 | 119.2 |
C6—C7—H7A | 109.7 | C19—C20—C15 | 119.4 (14) |
N1—C7—H7B | 109.7 | C19—C20—H20 | 120.3 |
C6—C7—H7B | 109.7 | C15—C20—H20 | 120.3 |
H7A—C7—H7B | 108.2 |
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4···O3i | 0.93 | 2.46 | 3.137 (17) | 130 |
C14—H14B···O2ii | 0.97 | 2.55 | 3.398 (16) | 146 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x, −y+3/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [Bi(C20H17N)(ClO4)] |
Mr | 579.78 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 12.0635 (10), 14.0755 (12), 11.5121 (10) |
β (°) | 107.590 (2) |
V (Å3) | 1863.4 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 9.63 |
Crystal size (mm) | 0.32 × 0.21 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD area-detector diffractometer |
Absorption correction | Empirical (using intensity measurements) (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.100, 0.145 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9267, 3279, 2585 |
Rint | 0.166 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.065, 0.163, 1.02 |
No. of reflections | 3279 |
No. of parameters | 244 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 4.89, −4.14 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4···O3i | 0.93 | 2.46 | 3.137 (17) | 130 |
C14—H14B···O2ii | 0.97 | 2.55 | 3.398 (16) | 146 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x, −y+3/2, z−1/2. |
Acknowledgements
The authors acknowledge the National Science Foundation of China (grant No. 51074093) for supporting this work.
References
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Bismuth is a nontoxic and noncarcinogenic element and many of its compounds are low in toxicity and can be safely used in areas such as medicine, catalysis, and synthesis (Shimada et al., 2004; Yin et al., 2008; Zhang, Qiu, Tan et al., 2010). The 5,6,7,12-tetrahydrodibenz[c,f][1,5]azabismocine framework is highly stable as a organobismuth Fragment because the weakly coordination exists between bismuth and nitrogen atoms on 1,5-azabismocine (Ohkata et al.,1989; Minoura et al.,1999), and therefore, is suitable for the study of organobismuth compounds bearing various groups on the bismuth and nitrogen atom for potential uses.
In the present paper, we report the crystal structure of the title compound (Fig. 1). The central bismuth–containing part of the complex exhibits a distorted pseudo trigonal–bipyramidal structure. The C (8), C (1) atoms and a lone electron pair of the Bi atom exist at the equatorial positions while the N (1) and O (1) atoms are located at the apical positions. The Bi–C (8) and Bi–C (1) distance is 2.250 (13) Å and 2.204 (12) Å, respectively. The C (8)–Bi–C (1) angle is 92.5 (5) ° while the N (1)–Bi–O (1) angle is 154.0 (3)°(rather than 180°). The Bi–N (1) distance (2.388 (10) Å) is shorter than 2.607 (5) Å of the precursor, C6H5N(CH2C6H4)2BiCl.The Bi–O (1) distance(2.546 (10) Å) is shorter than Bi–Cl(1) distance 2.597 (19) Å also(Zhang, Xia, Yan et al., 2009).