organic compounds
2-(1,2-Dihydro-2-oxopyridin-3-yl)-1,3-benzothiazol-3-ium bromide monohydrate
aNelson Mandela Metropolitan University, Summerstrand Campus, Department of Chemistry, University Way, Summerstrand, PO Box 77000, Port Elizabeth 6031, South Africa
*Correspondence e-mail: richard.betz@webmail.co.za
The title hydrated molecular salt, C12H9N2OS+·Br−·H2O, the aza-substituted six-membered ring is present as its keto tautomer instead of its aromatic tautomer. The dihedral angle between the fused ring system and the pyridinone ring in the cation is 6.91 (6)°. In the crystal, bifurcated N—H⋯(O,Br) and O—H⋯Br hydrogen bonds and S⋯O contacts [S⋯O = 3.0526 (10) Å] connect the components into a three-dimensional network. The closest centroid–centroid distance between two π-systems is 3.7420 (7) Å between two benzene rings.
Related literature
For the o-hydroxyphenyl)benzothiazole, see: Stenson (1970); Aydin et al. (1999); Jia & Jin (2009). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990); Bernstein et al. (1995). For our continuing efforts to create new radio-pharmaceuticals, see: Gerber et al. (2011).
of 2-(Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2010); cell SAINT (Bruker, 2010); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811022847/yk2012sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811022847/yk2012Isup3.hkl
Supporting information file. DOI: 10.1107/S1600536811022847/yk2012Isup4.cdx
Supporting information file. DOI: 10.1107/S1600536811022847/yk2012Isup4.cml
The compound was unintentionally obtained upon reacting ReOBr3(PPh3)2 and the unprotonated title compound in methanol. Crystals suitable for the X-ray diffraction study were obtained upon free evaporation of the solvent at room temperature in the course of three days.
Carbon-bound H atoms were placed in calculated positions (C—H 0.95 Å) and were included in the
in the riding model approximation, with U(H) set to 1.2Ueq(C). The hydrogen atoms on the water molecule as well as on both nitrogen atoms were located on a difference Fourier map and refined freely.Data collection: APEX2 (Bruker, 2010); cell
SAINT (Bruker, 2010); data reduction: SAINT (Bruker, 2010); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C12H9N2OS+·Br−·H2O | Z = 2 |
Mr = 327.20 | F(000) = 328 |
Triclinic, P1 | Dx = 1.732 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71069 Å |
a = 5.6480 (2) Å | Cell parameters from 9765 reflections |
b = 9.9900 (3) Å | θ = 2.7–28.3° |
c = 11.2070 (3) Å | µ = 3.44 mm−1 |
α = 88.808 (1)° | T = 100 K |
β = 83.098 (1)° | Platelet, brown |
γ = 87.914 (1)° | 0.54 × 0.32 × 0.12 mm |
V = 627.25 (3) Å3 |
Bruker APEXII CCD diffractometer | 3084 independent reflections |
Radiation source: fine-focus sealed tube | 3004 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.015 |
ϕ and ω scans | θmax = 28.3°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −7→7 |
Tmin = 0.825, Tmax = 1.000 | k = −13→13 |
11074 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.016 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.042 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0186P)2 + 0.3513P] where P = (Fo2 + 2Fc2)/3 |
3084 reflections | (Δ/σ)max = 0.001 |
179 parameters | Δρmax = 0.56 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
C12H9N2OS+·Br−·H2O | γ = 87.914 (1)° |
Mr = 327.20 | V = 627.25 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 5.6480 (2) Å | Mo Kα radiation |
b = 9.9900 (3) Å | µ = 3.44 mm−1 |
c = 11.2070 (3) Å | T = 100 K |
α = 88.808 (1)° | 0.54 × 0.32 × 0.12 mm |
β = 83.098 (1)° |
Bruker APEXII CCD diffractometer | 3084 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 3004 reflections with I > 2σ(I) |
Tmin = 0.825, Tmax = 1.000 | Rint = 0.015 |
11074 measured reflections |
R[F2 > 2σ(F2)] = 0.016 | 0 restraints |
wR(F2) = 0.042 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.56 e Å−3 |
3084 reflections | Δρmin = −0.28 e Å−3 |
179 parameters |
x | y | z | Uiso*/Ueq | ||
S1 | 0.75599 (5) | 0.38684 (3) | 0.03656 (3) | 0.01156 (6) | |
O1 | 0.88103 (16) | 0.57056 (9) | 0.18446 (8) | 0.01639 (17) | |
N1 | 0.35814 (18) | 0.30153 (10) | 0.13371 (9) | 0.01243 (19) | |
H71 | 0.234 (4) | 0.2828 (19) | 0.1871 (17) | 0.030 (5)* | |
N2 | 0.66139 (19) | 0.65833 (10) | 0.34986 (9) | 0.01387 (19) | |
H72 | 0.763 (3) | 0.7156 (18) | 0.3540 (16) | 0.022 (4)* | |
C1 | 0.5225 (2) | 0.38913 (11) | 0.15043 (10) | 0.0116 (2) | |
C11 | 0.6208 (2) | 0.26265 (11) | −0.03624 (11) | 0.0126 (2) | |
C12 | 0.4045 (2) | 0.22857 (12) | 0.02886 (10) | 0.0123 (2) | |
C13 | 0.2600 (2) | 0.13350 (12) | −0.01177 (11) | 0.0149 (2) | |
H13 | 0.1122 | 0.1115 | 0.0327 | 0.018* | |
C14 | 0.3400 (2) | 0.07239 (12) | −0.11923 (11) | 0.0155 (2) | |
H14 | 0.2447 | 0.0077 | −0.1497 | 0.019* | |
C15 | 0.5597 (2) | 0.10425 (12) | −0.18438 (11) | 0.0158 (2) | |
H15 | 0.6115 | 0.0593 | −0.2573 | 0.019* | |
C16 | 0.7025 (2) | 0.19979 (12) | −0.14454 (11) | 0.0145 (2) | |
H16 | 0.8503 | 0.2218 | −0.1891 | 0.017* | |
C21 | 0.6958 (2) | 0.56953 (12) | 0.25575 (11) | 0.0130 (2) | |
C22 | 0.5014 (2) | 0.48055 (11) | 0.24945 (10) | 0.0120 (2) | |
C23 | 0.2978 (2) | 0.48983 (12) | 0.33208 (11) | 0.0138 (2) | |
H23 | 0.1708 | 0.4313 | 0.3266 | 0.017* | |
C24 | 0.2781 (2) | 0.58459 (12) | 0.42333 (11) | 0.0152 (2) | |
H24 | 0.1391 | 0.5909 | 0.4801 | 0.018* | |
C25 | 0.4628 (2) | 0.66773 (12) | 0.42904 (11) | 0.0151 (2) | |
H25 | 0.4509 | 0.7333 | 0.4899 | 0.018* | |
Br1 | −0.08317 (2) | 0.185566 (11) | 0.318117 (10) | 0.01427 (4) | |
O90 | 0.0626 (2) | 0.13628 (10) | 0.59698 (10) | 0.0246 (2) | |
H901 | 0.039 (4) | 0.139 (2) | 0.527 (2) | 0.044 (6)* | |
H902 | 0.076 (4) | 0.054 (2) | 0.617 (2) | 0.045 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.01040 (12) | 0.01293 (13) | 0.01129 (13) | −0.00208 (10) | −0.00043 (10) | −0.00055 (10) |
O1 | 0.0139 (4) | 0.0194 (4) | 0.0157 (4) | −0.0049 (3) | 0.0005 (3) | −0.0020 (3) |
N1 | 0.0114 (4) | 0.0137 (5) | 0.0121 (5) | −0.0021 (4) | −0.0003 (4) | −0.0001 (4) |
N2 | 0.0150 (5) | 0.0126 (5) | 0.0144 (5) | −0.0033 (4) | −0.0025 (4) | −0.0003 (4) |
C1 | 0.0107 (5) | 0.0121 (5) | 0.0120 (5) | −0.0002 (4) | −0.0020 (4) | 0.0018 (4) |
C11 | 0.0139 (5) | 0.0114 (5) | 0.0130 (5) | −0.0011 (4) | −0.0039 (4) | 0.0008 (4) |
C12 | 0.0135 (5) | 0.0121 (5) | 0.0114 (5) | 0.0006 (4) | −0.0023 (4) | 0.0004 (4) |
C13 | 0.0137 (5) | 0.0147 (5) | 0.0163 (6) | −0.0017 (4) | −0.0023 (4) | 0.0008 (4) |
C14 | 0.0177 (6) | 0.0135 (5) | 0.0165 (6) | −0.0033 (4) | −0.0058 (5) | −0.0005 (4) |
C15 | 0.0202 (6) | 0.0153 (5) | 0.0121 (5) | 0.0004 (5) | −0.0028 (4) | −0.0014 (4) |
C16 | 0.0144 (5) | 0.0155 (5) | 0.0133 (5) | −0.0001 (4) | −0.0006 (4) | 0.0017 (4) |
C21 | 0.0147 (5) | 0.0128 (5) | 0.0117 (5) | −0.0004 (4) | −0.0029 (4) | 0.0014 (4) |
C22 | 0.0130 (5) | 0.0115 (5) | 0.0118 (5) | 0.0001 (4) | −0.0027 (4) | 0.0003 (4) |
C23 | 0.0132 (5) | 0.0129 (5) | 0.0155 (5) | −0.0008 (4) | −0.0020 (4) | 0.0007 (4) |
C24 | 0.0144 (5) | 0.0153 (5) | 0.0149 (5) | 0.0007 (4) | 0.0014 (4) | −0.0007 (4) |
C25 | 0.0191 (6) | 0.0126 (5) | 0.0135 (5) | 0.0011 (4) | −0.0019 (4) | −0.0012 (4) |
Br1 | 0.01712 (7) | 0.01291 (6) | 0.01233 (6) | −0.00307 (4) | 0.00086 (4) | −0.00021 (4) |
O90 | 0.0405 (6) | 0.0142 (5) | 0.0219 (5) | −0.0057 (4) | −0.0138 (4) | −0.0005 (4) |
S1—C1 | 1.7215 (12) | C14—C15 | 1.4059 (18) |
S1—C11 | 1.7461 (12) | C14—H14 | 0.9500 |
O1—C21 | 1.2379 (15) | C15—C16 | 1.3859 (17) |
N1—C1 | 1.3304 (15) | C15—H15 | 0.9500 |
N1—C12 | 1.3887 (15) | C16—H16 | 0.9500 |
N1—H71 | 0.89 (2) | C21—C22 | 1.4469 (17) |
N2—C25 | 1.3457 (16) | C22—C23 | 1.3885 (16) |
N2—C21 | 1.3835 (15) | C23—C24 | 1.3998 (17) |
N2—H72 | 0.832 (19) | C23—H23 | 0.9500 |
C1—C22 | 1.4429 (16) | C24—C25 | 1.3653 (18) |
C11—C12 | 1.3949 (16) | C24—H24 | 0.9500 |
C11—C16 | 1.3987 (17) | C25—H25 | 0.9500 |
C12—C13 | 1.3924 (17) | O90—H901 | 0.81 (2) |
C13—C14 | 1.3809 (17) | O90—H902 | 0.85 (2) |
C13—H13 | 0.9500 | ||
C1—S1—C11 | 90.47 (6) | C16—C15—C14 | 121.41 (11) |
C1—N1—C12 | 115.00 (10) | C16—C15—H15 | 119.3 |
C1—N1—H71 | 124.5 (13) | C14—C15—H15 | 119.3 |
C12—N1—H71 | 120.2 (12) | C15—C16—C11 | 117.47 (11) |
C25—N2—C21 | 124.55 (11) | C15—C16—H16 | 121.3 |
C25—N2—H72 | 116.9 (12) | C11—C16—H16 | 121.3 |
C21—N2—H72 | 118.2 (12) | O1—C21—N2 | 120.39 (11) |
N1—C1—C22 | 123.82 (11) | O1—C21—C22 | 124.89 (11) |
N1—C1—S1 | 112.33 (9) | N2—C21—C22 | 114.72 (11) |
C22—C1—S1 | 123.78 (9) | C23—C22—C1 | 122.07 (11) |
C12—C11—C16 | 120.69 (11) | C23—C22—C21 | 120.46 (11) |
C12—C11—S1 | 110.79 (9) | C1—C22—C21 | 117.35 (10) |
C16—C11—S1 | 128.53 (10) | C22—C23—C24 | 120.61 (11) |
N1—C12—C13 | 126.76 (11) | C22—C23—H23 | 119.7 |
N1—C12—C11 | 111.41 (10) | C24—C23—H23 | 119.7 |
C13—C12—C11 | 121.83 (11) | C25—C24—C23 | 118.57 (11) |
C14—C13—C12 | 117.41 (11) | C25—C24—H24 | 120.7 |
C14—C13—H13 | 121.3 | C23—C24—H24 | 120.7 |
C12—C13—H13 | 121.3 | N2—C25—C24 | 121.06 (11) |
C13—C14—C15 | 121.18 (12) | N2—C25—H25 | 119.5 |
C13—C14—H14 | 119.4 | C24—C25—H25 | 119.5 |
C15—C14—H14 | 119.4 | H901—O90—H902 | 107 (2) |
C12—N1—C1—C22 | 175.97 (10) | C12—C11—C16—C15 | 0.60 (17) |
C12—N1—C1—S1 | −0.99 (13) | S1—C11—C16—C15 | −179.35 (9) |
C11—S1—C1—N1 | 0.50 (9) | C25—N2—C21—O1 | 177.54 (11) |
C11—S1—C1—C22 | −176.46 (10) | C25—N2—C21—C22 | −2.08 (17) |
C1—S1—C11—C12 | 0.09 (9) | N1—C1—C22—C23 | −4.11 (18) |
C1—S1—C11—C16 | −179.95 (11) | S1—C1—C22—C23 | 172.51 (9) |
C1—N1—C12—C13 | −178.24 (11) | N1—C1—C22—C21 | 179.71 (10) |
C1—N1—C12—C11 | 1.06 (14) | S1—C1—C22—C21 | −3.67 (15) |
C16—C11—C12—N1 | 179.40 (10) | O1—C21—C22—C23 | −178.23 (11) |
S1—C11—C12—N1 | −0.64 (12) | N2—C21—C22—C23 | 1.36 (16) |
C16—C11—C12—C13 | −1.25 (18) | O1—C21—C22—C1 | −1.99 (18) |
S1—C11—C12—C13 | 178.71 (9) | N2—C21—C22—C1 | 177.61 (10) |
N1—C12—C13—C14 | 179.89 (11) | C1—C22—C23—C24 | −176.56 (11) |
C11—C12—C13—C14 | 0.66 (18) | C21—C22—C23—C24 | −0.50 (18) |
C12—C13—C14—C15 | 0.55 (18) | C22—C23—C24—C25 | 0.17 (18) |
C13—C14—C15—C16 | −1.19 (19) | C21—N2—C25—C24 | 1.87 (19) |
C14—C15—C16—C11 | 0.59 (18) | C23—C24—C25—N2 | −0.80 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H71···Br1 | 0.89 (2) | 2.40 (2) | 3.2708 (10) | 168.2 (17) |
N2—H72···O90i | 0.832 (19) | 1.930 (19) | 2.7390 (15) | 163.6 (17) |
O90—H901···Br1 | 0.81 (2) | 2.55 (2) | 3.3485 (11) | 170 (2) |
O90—H902···Br1ii | 0.85 (2) | 2.49 (2) | 3.3360 (10) | 176 (2) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C12H9N2OS+·Br−·H2O |
Mr | 327.20 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 5.6480 (2), 9.9900 (3), 11.2070 (3) |
α, β, γ (°) | 88.808 (1), 83.098 (1), 87.914 (1) |
V (Å3) | 627.25 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 3.44 |
Crystal size (mm) | 0.54 × 0.32 × 0.12 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.825, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11074, 3084, 3004 |
Rint | 0.015 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.016, 0.042, 1.07 |
No. of reflections | 3084 |
No. of parameters | 179 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.56, −0.28 |
Computer programs: APEX2 (Bruker, 2010), SAINT (Bruker, 2010), SIR97 (Altomare et al., 1999), ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H71···Br1 | 0.89 (2) | 2.40 (2) | 3.2708 (10) | 168.2 (17) |
N2—H72···O90i | 0.832 (19) | 1.930 (19) | 2.7390 (15) | 163.6 (17) |
O90—H901···Br1 | 0.81 (2) | 2.55 (2) | 3.3485 (11) | 170 (2) |
O90—H902···Br1ii | 0.85 (2) | 2.49 (2) | 3.3360 (10) | 176 (2) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y, −z+1. |
Acknowledgements
The authors thank Ms Dakota Neil-Schutte for helpful discussions.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In our continuous efforts to create new radio-pharmaceuticals (Gerber et al., 2011), we attempted the coordination reaction of a bidentate ligand towards a rhenium(V) precursor upon which a crystalline reaction product was obtained. The crystal structure analysis showed the unintentional synthesis of a protonated derivative of the ligand. The structure of 2-(o-hydroxyphenyl)benzothiazole is apparent in the literature (Stenson, 1970; Aydin et al., 1999; Jia & Jin, 2009).
In the molecule, the – possible – hydroxy-pyridine moiety is present as its keto-tautomer. Protonation took place on the nitrogen atom of the five-membered heterocyclic subunit. The molecule is essentially flat, the least-squares planes defined by the ring atoms of the benzothiazol moiety and the ring atoms of the hydroxy-pyridine tautomer enclose an angle of only 6.91 (6) °. One molecule of solvent water is present in the crystal structure (Fig. 1).
In the crystal structure, hydrogen bonds as well as S···O contacts (whose range falls by more than 0.2 Å below the sum of van-der-Waals radii of the respective atoms) are present. While the hydrogen bonds originating from the solvent water as well as the protonated nitrogen atom of the five-membered heterocyclic subunit exclusively have the bromide anion as acceptor, the water molecule's oxygen atom serves as acceptor for the hydrogen atom of the intracyclic NH group in the six-membered heterocycle. The pattern formed by the water molecules connecting the bromide anions is reminiscent of a parallelogram (Fig. 2). The S···O contacts give rise to the formation of centrosymmetric dimers. In total, the components of the crystal structure are connected to a three-dimensional network. In terms of graph-set analysis (Etter et al., 1990; Bernstein et al., 1995), the descriptor for the hydrogen bonding system is DDDD on the unitary level. The parallelogram shaped pattern necessitates a R42(8) descriptor on the binary level. The description of the S···O contacts is possible by a R22(10) descriptor on the unitary level. The closest intercentroid distance between two π-systems was found at 3.7420 (7) Å and was observed between two phenyl-moieties.
The packing of the title compound is shown in Figure 3.