organic compounds
(9S,13R,14S)-7,8-Didehydro-4-(4-fluorobenzyloxy)-3,7-dimethoxy-17-methylmorphinan-6-one sesquihydrate
aSchool of Chemistry and Biological Engineering, Changsha University of Science & Technology, Changsha 410114, People's Republic of China
*Correspondence e-mail: xingliangzheng@163.com
In the title sinomenine derivative, C26H28FNO4·1.5H2O, the dihedral angle between the two aromatic rings is 55.32 (6)°. The N-containing ring has an approximate chair conformation, while other two rings have approximate envelope and half-chair conformations. One water molecule is located on a twofold symmetry axis. In the crystal, the water molecules form O—H⋯O and O—H⋯N hydrogen bonds, bridging symmetry-related main molecules.
Related literature
For background to the biological activity of sinomenine derivatives and other related compounds, see: Liu et al. (1994, 1996, 1997); Mark et al. (2003); Ye et al. (2004). For the synthesis of the title compound, see: Mitsunobu (1981). For related structures, see: Li et al. (2009); Batterham et al. (1965); Zheng & Jiang (2010); Zheng et al. (2011).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
10.1107/S1600536811026183/bh2361sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811026183/bh2361Isup2.hkl
The title compound was obtained according to the method of Mitsunobu (1981). Colorless blocks were grown from an acetic ether solution.
The water H atoms (H21S, H22S and H11S) were located in a difference map. H11S was refined with free coordinates and isotropic displacement parameter. H21S and H22S were fixed in their as found positions and allowed to ride on O2S, and their displacement parameters were refined. Other H atoms were positioned geometrically, with C—H = 0.95 (aromatic CH), 0.98 (methyl CH3), 0.99 (methylene CH2) or 1.00 Å (methine CH), and were constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(carrier C) or Uiso(H) = 1.5Ueq(carrier C17 C18 C19). 1359 Friedel pairs were used for the
refinement.Data collection: APEX2 (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound showing 50% probability displacement ellipsoids. | |
Fig. 2. A part of the crystal structure of the title compound. |
C26H28FNO4·1.5H2O | F(000) = 988 |
Mr = 464.52 | Dx = 1.302 Mg m−3 |
Monoclinic, C2 | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: C 2y | Cell parameters from 6582 reflections |
a = 18.0155 (3) Å | θ = 2.6–64.7° |
b = 7.6776 (1) Å | µ = 0.79 mm−1 |
c = 18.1506 (4) Å | T = 133 K |
β = 109.324 (1)° | Block, colourless |
V = 2369.08 (7) Å3 | 0.25 × 0.15 × 0.10 mm |
Z = 4 |
Bruker APEXII CCD diffractometer | 3415 independent reflections |
Radiation source: fine-focus sealed tube | 3402 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ϕ and ω scans | θmax = 65.0°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −20→21 |
Tmin = 0.826, Tmax = 0.925 | k = −9→9 |
7232 measured reflections | l = −18→20 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.028 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.081 | w = 1/[σ2(Fo2) + (0.0555P)2 + 0.6114P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
3415 reflections | Δρmax = 0.20 e Å−3 |
312 parameters | Δρmin = −0.18 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 1359 Friedel pairs |
0 constraints | Absolute structure parameter: 0.05 (12) |
Primary atom site location: structure-invariant direct methods |
C26H28FNO4·1.5H2O | V = 2369.08 (7) Å3 |
Mr = 464.52 | Z = 4 |
Monoclinic, C2 | Cu Kα radiation |
a = 18.0155 (3) Å | µ = 0.79 mm−1 |
b = 7.6776 (1) Å | T = 133 K |
c = 18.1506 (4) Å | 0.25 × 0.15 × 0.10 mm |
β = 109.324 (1)° |
Bruker APEXII CCD diffractometer | 3415 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 3402 reflections with I > 2σ(I) |
Tmin = 0.826, Tmax = 0.925 | Rint = 0.024 |
7232 measured reflections |
R[F2 > 2σ(F2)] = 0.028 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.081 | Δρmax = 0.20 e Å−3 |
S = 1.04 | Δρmin = −0.18 e Å−3 |
3415 reflections | Absolute structure: Flack (1983), 1359 Friedel pairs |
312 parameters | Absolute structure parameter: 0.05 (12) |
1 restraint |
x | y | z | Uiso*/Ueq | ||
F1 | 0.49485 (7) | −0.26627 (16) | 0.40332 (8) | 0.0571 (3) | |
N1 | −0.03356 (8) | 0.4513 (2) | 0.15607 (8) | 0.0314 (3) | |
O1 | 0.26142 (6) | 0.36402 (13) | 0.34083 (6) | 0.0237 (2) | |
O2 | 0.29280 (6) | 0.57951 (14) | 0.46321 (6) | 0.0268 (2) | |
O3 | 0.32140 (7) | 0.48228 (18) | 0.15878 (7) | 0.0392 (3) | |
O4 | 0.24651 (6) | 0.74481 (15) | 0.07306 (7) | 0.0307 (3) | |
C1 | 0.21885 (8) | 0.51681 (19) | 0.33202 (9) | 0.0217 (3) | |
C2 | 0.23288 (8) | 0.6279 (2) | 0.39717 (9) | 0.0233 (3) | |
C3 | 0.18682 (9) | 0.7742 (2) | 0.39246 (9) | 0.0265 (3) | |
H3 | 0.1968 | 0.8511 | 0.4357 | 0.032* | |
C4 | 0.12611 (8) | 0.80691 (19) | 0.32395 (9) | 0.0253 (3) | |
H4 | 0.0943 | 0.9072 | 0.3209 | 0.030* | |
C5 | 0.10990 (8) | 0.6993 (2) | 0.25971 (9) | 0.0239 (3) | |
C6 | 0.15775 (8) | 0.55115 (19) | 0.26184 (9) | 0.0220 (3) | |
C7 | 0.13574 (8) | 0.4223 (2) | 0.19297 (9) | 0.0254 (3) | |
C8 | 0.08177 (8) | 0.5102 (2) | 0.11800 (9) | 0.0264 (3) | |
H8 | 0.0620 | 0.4171 | 0.0777 | 0.032* | |
C9 | 0.01057 (9) | 0.5906 (2) | 0.13270 (9) | 0.0285 (3) | |
H9 | −0.0244 | 0.6395 | 0.0820 | 0.034* | |
C10 | 0.03877 (8) | 0.7424 (2) | 0.18927 (9) | 0.0279 (3) | |
H10A | 0.0520 | 0.8416 | 0.1610 | 0.033* | |
H10B | −0.0048 | 0.7799 | 0.2075 | 0.033* | |
C11 | 0.20578 (9) | 0.3494 (2) | 0.17160 (9) | 0.0275 (3) | |
H11A | 0.2421 | 0.2888 | 0.2176 | 0.033* | |
H11B | 0.1861 | 0.2628 | 0.1292 | 0.033* | |
C12 | 0.25034 (9) | 0.4894 (2) | 0.14564 (9) | 0.0281 (3) | |
C13 | 0.20238 (9) | 0.6325 (2) | 0.09902 (9) | 0.0266 (3) | |
C14 | 0.12457 (9) | 0.6423 (2) | 0.08562 (9) | 0.0259 (3) | |
H14 | 0.0957 | 0.7353 | 0.0548 | 0.031* | |
C15 | 0.08761 (10) | 0.2737 (2) | 0.21185 (10) | 0.0316 (4) | |
H15A | 0.0736 | 0.1877 | 0.1688 | 0.038* | |
H15B | 0.1198 | 0.2137 | 0.2601 | 0.038* | |
C16 | 0.01249 (10) | 0.3444 (2) | 0.22285 (10) | 0.0330 (4) | |
H16A | −0.0202 | 0.2457 | 0.2293 | 0.040* | |
H16B | 0.0267 | 0.4156 | 0.2710 | 0.040* | |
C17 | 0.31222 (10) | 0.6993 (2) | 0.52708 (9) | 0.0332 (4) | |
H17A | 0.3228 | 0.8142 | 0.5092 | 0.050* | |
H17B | 0.3590 | 0.6580 | 0.5686 | 0.050* | |
H17C | 0.2681 | 0.7079 | 0.5471 | 0.050* | |
C18 | 0.20598 (10) | 0.8932 (2) | 0.03173 (10) | 0.0355 (4) | |
H18A | 0.1646 | 0.8552 | −0.0158 | 0.053* | |
H18B | 0.2431 | 0.9685 | 0.0177 | 0.053* | |
H18C | 0.1823 | 0.9579 | 0.0649 | 0.053* | |
C19 | −0.10438 (10) | 0.5180 (3) | 0.16953 (12) | 0.0392 (4) | |
H19A | −0.1362 | 0.4201 | 0.1767 | 0.059* | |
H19B | −0.1352 | 0.5874 | 0.1245 | 0.059* | |
H19C | −0.0890 | 0.5911 | 0.2164 | 0.059* | |
C20 | 0.34415 (9) | 0.3842 (2) | 0.35220 (9) | 0.0273 (3) | |
H20A | 0.3687 | 0.4621 | 0.3971 | 0.033* | |
H20B | 0.3512 | 0.4367 | 0.3051 | 0.033* | |
C21 | 0.38241 (9) | 0.2075 (2) | 0.36728 (9) | 0.0262 (3) | |
C22 | 0.46433 (10) | 0.1988 (2) | 0.39458 (10) | 0.0323 (4) | |
H22 | 0.4942 | 0.3033 | 0.4049 | 0.039* | |
C23 | 0.50269 (10) | 0.0401 (3) | 0.40683 (11) | 0.0394 (4) | |
H23 | 0.5585 | 0.0343 | 0.4250 | 0.047* | |
C24 | 0.45800 (11) | −0.1091 (3) | 0.39200 (12) | 0.0398 (4) | |
C25 | 0.37742 (11) | −0.1056 (2) | 0.36530 (12) | 0.0397 (4) | |
H25 | 0.3480 | −0.2107 | 0.3556 | 0.048* | |
C26 | 0.33978 (10) | 0.0545 (2) | 0.35278 (11) | 0.0335 (4) | |
H26 | 0.2839 | 0.0590 | 0.3340 | 0.040* | |
O2S | 0.39668 (7) | 0.7129 (2) | 0.03873 (8) | 0.0485 (4) | |
H21S | 0.4268 | 0.7898 | 0.0802 | 0.043 (6)* | |
H22S | 0.3668 | 0.6573 | 0.0628 | 0.131 (15)* | |
O1S | 0.5000 | 0.4796 (3) | 0.0000 | 0.0471 (5) | |
H11S | 0.4712 (14) | 0.555 (4) | 0.0168 (15) | 0.059 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.0562 (6) | 0.0372 (6) | 0.0885 (9) | 0.0217 (5) | 0.0383 (6) | 0.0200 (6) |
N1 | 0.0288 (6) | 0.0374 (8) | 0.0294 (8) | −0.0071 (6) | 0.0115 (5) | −0.0058 (6) |
O1 | 0.0254 (5) | 0.0206 (5) | 0.0261 (6) | 0.0017 (4) | 0.0101 (4) | 0.0017 (4) |
O2 | 0.0308 (5) | 0.0273 (5) | 0.0195 (6) | 0.0014 (4) | 0.0045 (4) | −0.0017 (4) |
O3 | 0.0355 (6) | 0.0483 (8) | 0.0397 (7) | 0.0102 (5) | 0.0205 (5) | 0.0108 (6) |
O4 | 0.0313 (5) | 0.0316 (6) | 0.0331 (6) | −0.0011 (5) | 0.0158 (4) | 0.0059 (5) |
C1 | 0.0241 (6) | 0.0198 (7) | 0.0241 (8) | −0.0004 (5) | 0.0117 (5) | 0.0022 (6) |
C2 | 0.0244 (7) | 0.0244 (7) | 0.0219 (8) | −0.0044 (6) | 0.0088 (6) | 0.0001 (6) |
C3 | 0.0298 (7) | 0.0260 (8) | 0.0253 (8) | −0.0044 (6) | 0.0113 (6) | −0.0051 (6) |
C4 | 0.0258 (7) | 0.0220 (7) | 0.0299 (9) | 0.0000 (6) | 0.0117 (6) | −0.0004 (6) |
C5 | 0.0223 (6) | 0.0252 (8) | 0.0251 (8) | −0.0033 (6) | 0.0091 (6) | 0.0035 (6) |
C6 | 0.0248 (7) | 0.0221 (7) | 0.0215 (8) | −0.0046 (6) | 0.0110 (6) | 0.0005 (6) |
C7 | 0.0310 (7) | 0.0261 (8) | 0.0194 (8) | −0.0040 (6) | 0.0086 (6) | −0.0019 (6) |
C8 | 0.0290 (7) | 0.0287 (8) | 0.0208 (8) | −0.0043 (6) | 0.0072 (6) | −0.0022 (6) |
C9 | 0.0263 (7) | 0.0342 (9) | 0.0230 (9) | −0.0044 (7) | 0.0056 (6) | −0.0004 (7) |
C10 | 0.0259 (7) | 0.0294 (8) | 0.0271 (9) | 0.0014 (6) | 0.0070 (6) | 0.0018 (6) |
C11 | 0.0398 (8) | 0.0236 (8) | 0.0207 (8) | 0.0012 (6) | 0.0120 (6) | −0.0038 (6) |
C12 | 0.0346 (8) | 0.0314 (9) | 0.0214 (8) | 0.0022 (7) | 0.0138 (6) | −0.0038 (6) |
C13 | 0.0330 (7) | 0.0301 (8) | 0.0188 (8) | −0.0025 (6) | 0.0113 (6) | −0.0019 (6) |
C14 | 0.0311 (7) | 0.0286 (8) | 0.0165 (8) | −0.0042 (6) | 0.0060 (6) | −0.0013 (6) |
C15 | 0.0391 (8) | 0.0270 (8) | 0.0289 (9) | −0.0083 (7) | 0.0115 (7) | −0.0035 (7) |
C16 | 0.0371 (8) | 0.0350 (9) | 0.0296 (9) | −0.0130 (7) | 0.0145 (6) | −0.0028 (7) |
C17 | 0.0426 (9) | 0.0300 (8) | 0.0216 (9) | −0.0040 (7) | 0.0034 (6) | −0.0033 (6) |
C18 | 0.0374 (8) | 0.0350 (9) | 0.0336 (10) | −0.0049 (8) | 0.0109 (7) | 0.0074 (7) |
C19 | 0.0319 (8) | 0.0491 (11) | 0.0393 (10) | −0.0082 (8) | 0.0154 (7) | −0.0081 (8) |
C20 | 0.0284 (7) | 0.0261 (8) | 0.0310 (9) | −0.0007 (6) | 0.0146 (6) | 0.0020 (7) |
C21 | 0.0332 (7) | 0.0289 (8) | 0.0215 (8) | 0.0050 (6) | 0.0156 (6) | 0.0034 (6) |
C22 | 0.0334 (8) | 0.0355 (9) | 0.0283 (9) | −0.0011 (7) | 0.0104 (6) | −0.0009 (7) |
C23 | 0.0343 (9) | 0.0478 (11) | 0.0369 (10) | 0.0089 (8) | 0.0128 (7) | 0.0037 (8) |
C24 | 0.0459 (9) | 0.0355 (9) | 0.0466 (11) | 0.0143 (8) | 0.0267 (8) | 0.0149 (8) |
C25 | 0.0448 (9) | 0.0258 (8) | 0.0596 (12) | 0.0024 (8) | 0.0322 (9) | 0.0078 (8) |
C26 | 0.0318 (8) | 0.0301 (9) | 0.0446 (10) | 0.0029 (7) | 0.0208 (7) | 0.0054 (7) |
O2S | 0.0406 (6) | 0.0605 (9) | 0.0520 (8) | −0.0194 (7) | 0.0256 (6) | −0.0300 (7) |
O1S | 0.0402 (10) | 0.0401 (11) | 0.0665 (14) | 0.000 | 0.0251 (10) | 0.000 |
F1—C24 | 1.360 (2) | C12—C13 | 1.479 (2) |
N1—C19 | 1.469 (2) | C13—C14 | 1.343 (2) |
N1—C16 | 1.471 (2) | C14—H14 | 0.9500 |
N1—C9 | 1.476 (2) | C15—C16 | 1.531 (2) |
O1—C1 | 1.3815 (18) | C15—H15A | 0.9900 |
O1—C20 | 1.4438 (17) | C15—H15B | 0.9900 |
O2—C2 | 1.3725 (18) | C16—H16A | 0.9900 |
O2—C17 | 1.430 (2) | C16—H16B | 0.9900 |
O3—C12 | 1.2233 (19) | C17—H17A | 0.9800 |
O4—C13 | 1.3585 (19) | C17—H17B | 0.9800 |
O4—C18 | 1.425 (2) | C17—H17C | 0.9800 |
C1—C6 | 1.406 (2) | C18—H18A | 0.9800 |
C1—C2 | 1.411 (2) | C18—H18B | 0.9800 |
C2—C3 | 1.383 (2) | C18—H18C | 0.9800 |
C3—C4 | 1.380 (2) | C19—H19A | 0.9800 |
C3—H3 | 0.9500 | C19—H19B | 0.9800 |
C4—C5 | 1.379 (2) | C19—H19C | 0.9800 |
C4—H4 | 0.9500 | C20—C21 | 1.505 (2) |
C5—C6 | 1.420 (2) | C20—H20A | 0.9900 |
C5—C10 | 1.517 (2) | C20—H20B | 0.9900 |
C6—C7 | 1.540 (2) | C21—C26 | 1.381 (2) |
C7—C15 | 1.539 (2) | C21—C22 | 1.394 (2) |
C7—C8 | 1.542 (2) | C22—C23 | 1.381 (3) |
C7—C11 | 1.543 (2) | C22—H22 | 0.9500 |
C8—C14 | 1.506 (2) | C23—C24 | 1.375 (3) |
C8—C9 | 1.525 (2) | C23—H23 | 0.9500 |
C8—H8 | 1.0000 | C24—C25 | 1.370 (3) |
C9—C10 | 1.525 (2) | C25—C26 | 1.386 (3) |
C9—H9 | 1.0000 | C25—H25 | 0.9500 |
C10—H10A | 0.9900 | C26—H26 | 0.9500 |
C10—H10B | 0.9900 | O2S—H21S | 0.9694 |
C11—C12 | 1.507 (2) | O2S—H22S | 0.9051 |
C11—H11A | 0.9900 | O1S—H11S | 0.90 (3) |
C11—H11B | 0.9900 | ||
C19—N1—C16 | 109.97 (14) | O4—C13—C12 | 111.83 (13) |
C19—N1—C9 | 112.02 (14) | C13—C14—C8 | 122.02 (15) |
C16—N1—C9 | 115.49 (12) | C13—C14—H14 | 119.0 |
C1—O1—C20 | 115.64 (11) | C8—C14—H14 | 119.0 |
C2—O2—C17 | 116.41 (12) | C16—C15—C7 | 110.70 (13) |
C13—O4—C18 | 115.67 (12) | C16—C15—H15A | 109.5 |
O1—C1—C6 | 120.15 (13) | C7—C15—H15A | 109.5 |
O1—C1—C2 | 118.52 (12) | C16—C15—H15B | 109.5 |
C6—C1—C2 | 121.03 (14) | C7—C15—H15B | 109.5 |
O2—C2—C3 | 123.80 (14) | H15A—C15—H15B | 108.1 |
O2—C2—C1 | 116.07 (13) | N1—C16—C15 | 111.84 (13) |
C3—C2—C1 | 120.13 (13) | N1—C16—H16A | 109.2 |
C4—C3—C2 | 118.93 (14) | C15—C16—H16A | 109.2 |
C4—C3—H3 | 120.5 | N1—C16—H16B | 109.2 |
C2—C3—H3 | 120.5 | C15—C16—H16B | 109.2 |
C5—C4—C3 | 122.39 (14) | H16A—C16—H16B | 107.9 |
C5—C4—H4 | 118.8 | O2—C17—H17A | 109.5 |
C3—C4—H4 | 118.8 | O2—C17—H17B | 109.5 |
C4—C5—C6 | 120.01 (13) | H17A—C17—H17B | 109.5 |
C4—C5—C10 | 117.71 (14) | O2—C17—H17C | 109.5 |
C6—C5—C10 | 122.25 (14) | H17A—C17—H17C | 109.5 |
C1—C6—C5 | 117.47 (13) | H17B—C17—H17C | 109.5 |
C1—C6—C7 | 121.96 (13) | O4—C18—H18A | 109.5 |
C5—C6—C7 | 120.11 (13) | O4—C18—H18B | 109.5 |
C15—C7—C6 | 107.95 (12) | H18A—C18—H18B | 109.5 |
C15—C7—C8 | 106.49 (12) | O4—C18—H18C | 109.5 |
C6—C7—C8 | 110.68 (13) | H18A—C18—H18C | 109.5 |
C15—C7—C11 | 110.81 (13) | H18B—C18—H18C | 109.5 |
C6—C7—C11 | 115.14 (12) | N1—C19—H19A | 109.5 |
C8—C7—C11 | 105.44 (12) | N1—C19—H19B | 109.5 |
C14—C8—C9 | 111.39 (13) | H19A—C19—H19B | 109.5 |
C14—C8—C7 | 112.60 (12) | N1—C19—H19C | 109.5 |
C9—C8—C7 | 110.14 (12) | H19A—C19—H19C | 109.5 |
C14—C8—H8 | 107.5 | H19B—C19—H19C | 109.5 |
C9—C8—H8 | 107.5 | O1—C20—C21 | 108.57 (12) |
C7—C8—H8 | 107.5 | O1—C20—H20A | 110.0 |
N1—C9—C8 | 108.72 (13) | C21—C20—H20A | 110.0 |
N1—C9—C10 | 116.85 (14) | O1—C20—H20B | 110.0 |
C8—C9—C10 | 108.37 (12) | C21—C20—H20B | 110.0 |
N1—C9—H9 | 107.5 | H20A—C20—H20B | 108.4 |
C8—C9—H9 | 107.5 | C26—C21—C22 | 118.90 (15) |
C10—C9—H9 | 107.5 | C26—C21—C20 | 122.68 (13) |
C5—C10—C9 | 113.63 (14) | C22—C21—C20 | 118.39 (15) |
C5—C10—H10A | 108.8 | C23—C22—C21 | 120.94 (16) |
C9—C10—H10A | 108.8 | C23—C22—H22 | 119.5 |
C5—C10—H10B | 108.8 | C21—C22—H22 | 119.5 |
C9—C10—H10B | 108.8 | C24—C23—C22 | 118.28 (15) |
H10A—C10—H10B | 107.7 | C24—C23—H23 | 120.9 |
C12—C11—C7 | 112.63 (13) | C22—C23—H23 | 120.9 |
C12—C11—H11A | 109.1 | F1—C24—C25 | 118.55 (17) |
C7—C11—H11A | 109.1 | F1—C24—C23 | 119.01 (15) |
C12—C11—H11B | 109.1 | C25—C24—C23 | 122.44 (17) |
C7—C11—H11B | 109.1 | C24—C25—C26 | 118.62 (17) |
H11A—C11—H11B | 107.8 | C24—C25—H25 | 120.7 |
O3—C12—C13 | 121.36 (15) | C26—C25—H25 | 120.7 |
O3—C12—C11 | 122.58 (15) | C21—C26—C25 | 120.83 (15) |
C13—C12—C11 | 115.97 (13) | C21—C26—H26 | 119.6 |
C14—C13—O4 | 126.68 (15) | C25—C26—H26 | 119.6 |
C14—C13—C12 | 121.49 (14) | H21S—O2S—H22S | 100.4 |
C20—O1—C1—C6 | 117.00 (14) | C7—C8—C9—C10 | 67.54 (17) |
C20—O1—C1—C2 | −69.19 (16) | C4—C5—C10—C9 | −161.88 (13) |
C17—O2—C2—C3 | −6.5 (2) | C6—C5—C10—C9 | 16.3 (2) |
C17—O2—C2—C1 | 174.39 (13) | N1—C9—C10—C5 | 76.09 (17) |
O1—C1—C2—O2 | 4.70 (18) | C8—C9—C10—C5 | −47.08 (17) |
C6—C1—C2—O2 | 178.46 (12) | C15—C7—C11—C12 | 174.84 (13) |
O1—C1—C2—C3 | −174.47 (12) | C6—C7—C11—C12 | −62.30 (18) |
C6—C1—C2—C3 | −0.7 (2) | C8—C7—C11—C12 | 59.99 (16) |
O2—C2—C3—C4 | −177.53 (14) | C7—C11—C12—O3 | 146.72 (15) |
C1—C2—C3—C4 | 1.6 (2) | C7—C11—C12—C13 | −36.64 (19) |
C2—C3—C4—C5 | −0.4 (2) | C18—O4—C13—C14 | 4.3 (2) |
C3—C4—C5—C6 | −1.7 (2) | C18—O4—C13—C12 | −176.15 (14) |
C3—C4—C5—C10 | 176.50 (14) | O3—C12—C13—C14 | −178.85 (14) |
O1—C1—C6—C5 | 172.34 (12) | C11—C12—C13—C14 | 4.5 (2) |
C2—C1—C6—C5 | −1.31 (19) | O3—C12—C13—O4 | 1.6 (2) |
O1—C1—C6—C7 | 0.16 (19) | C11—C12—C13—O4 | −175.12 (12) |
C2—C1—C6—C7 | −173.49 (13) | O4—C13—C14—C8 | −179.60 (15) |
C4—C5—C6—C1 | 2.50 (19) | C12—C13—C14—C8 | 0.9 (2) |
C10—C5—C6—C1 | −175.63 (13) | C9—C8—C14—C13 | 150.28 (14) |
C4—C5—C6—C7 | 174.83 (13) | C7—C8—C14—C13 | 26.0 (2) |
C10—C5—C6—C7 | −3.3 (2) | C6—C7—C15—C16 | 60.26 (16) |
C1—C6—C7—C15 | 77.55 (16) | C8—C7—C15—C16 | −58.62 (17) |
C5—C6—C7—C15 | −94.43 (16) | C11—C7—C15—C16 | −172.80 (13) |
C1—C6—C7—C8 | −166.27 (12) | C19—N1—C16—C15 | −179.28 (13) |
C5—C6—C7—C8 | 21.76 (18) | C9—N1—C16—C15 | −51.32 (19) |
C1—C6—C7—C11 | −46.83 (19) | C7—C15—C16—N1 | 52.98 (18) |
C5—C6—C7—C11 | 141.20 (14) | C1—O1—C20—C21 | 175.38 (12) |
C15—C7—C8—C14 | −171.75 (13) | O1—C20—C21—C26 | 14.3 (2) |
C6—C7—C8—C14 | 71.16 (16) | O1—C20—C21—C22 | −167.91 (13) |
C11—C7—C8—C14 | −53.97 (17) | C26—C21—C22—C23 | 0.2 (2) |
C15—C7—C8—C9 | 63.25 (16) | C20—C21—C22—C23 | −177.70 (16) |
C6—C7—C8—C9 | −53.84 (16) | C21—C22—C23—C24 | −0.5 (3) |
C11—C7—C8—C9 | −178.96 (12) | C22—C23—C24—F1 | 179.61 (18) |
C19—N1—C9—C8 | −178.64 (13) | C22—C23—C24—C25 | 0.4 (3) |
C16—N1—C9—C8 | 54.42 (18) | F1—C24—C25—C26 | −179.18 (17) |
C19—N1—C9—C10 | 58.37 (18) | C23—C24—C25—C26 | 0.0 (3) |
C16—N1—C9—C10 | −68.57 (18) | C22—C21—C26—C25 | 0.2 (3) |
C14—C8—C9—N1 | 173.90 (13) | C20—C21—C26—C25 | 178.05 (17) |
C7—C8—C9—N1 | −60.41 (17) | C24—C25—C26—C21 | −0.4 (3) |
C14—C8—C9—C10 | −58.15 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2S—H22S···O4 | 0.91 | 2.33 | 2.9805 (16) | 128 |
O2S—H22S···O3 | 0.91 | 2.54 | 3.417 (2) | 164 |
O1S—H11S···O2S | 0.90 (3) | 1.94 (3) | 2.8342 (19) | 172 (2) |
O2S—H21S···N1i | 0.97 | 1.81 | 2.7736 (19) | 170 |
Symmetry code: (i) x+1/2, y+1/2, z. |
Experimental details
Crystal data | |
Chemical formula | C26H28FNO4·1.5H2O |
Mr | 464.52 |
Crystal system, space group | Monoclinic, C2 |
Temperature (K) | 133 |
a, b, c (Å) | 18.0155 (3), 7.6776 (1), 18.1506 (4) |
β (°) | 109.324 (1) |
V (Å3) | 2369.08 (7) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.79 |
Crystal size (mm) | 0.25 × 0.15 × 0.10 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.826, 0.925 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7232, 3415, 3402 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.588 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.028, 0.081, 1.04 |
No. of reflections | 3415 |
No. of parameters | 312 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.18 |
Absolute structure | Flack (1983), 1359 Friedel pairs |
Absolute structure parameter | 0.05 (12) |
Computer programs: APEX2 (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O2S—H22S···O4 | 0.91 | 2.33 | 2.9805 (16) | 128 |
O2S—H22S···O3 | 0.91 | 2.54 | 3.417 (2) | 164 |
O1S—H11S···O2S | 0.90 (3) | 1.94 (3) | 2.8342 (19) | 172 (2) |
O2S—H21S···N1i | 0.97 | 1.81 | 2.7736 (19) | 170 |
Symmetry code: (i) x+1/2, y+1/2, z. |
Acknowledgements
The project was supported by the National Natural Science Foundation of China (No. 20976017) and the Scientific Research Fund of the Hunan Provincial Science and Technology Department, China (No. 2009 C K3070).
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
We synthesized a new sinomenine derivative sesquihydrate. Herein, its crystal structure is reported. Biological effects of sinomenine derivatives and related compounds have been described (Liu et al., 1994, 1996, 1997; Mark et al., 2003; Ye et al., 2004).
The molecular structure of the title compound is shown in Fig. 1. The crystal structure is stabilized by O—H···O and O—H···N hydrogen bonds linking the sinomenine derivative and the water molecules, and weak C—H···O hydrogen bonds between molecules (Fig. 2). Significant aromatic stacking interactions were not found. There exist two planes in the molecule of the title compound: atoms C1···C6 form the benzene plane (I), and atoms C21···C26 form the benzene plane substituted by fluorine (II). The angle between the two planes (I) and (II) is 55.32 (6)°. Rings C [C7/C8/C11/C12/C13/C14] and B [C5···C10] in the molecule approximate envelope and half-chair conformations, respectively. In contrast, ring D [C9/N1/C16/C15/C7/C8] exhibits an almost regular chair conformation. Similar features have been described in related compounds (Zheng & Jiang, 2010; Zheng et al., 2011; Li et al., 2009; Batterham et al., 1965).