metal-organic compounds
Hexachloridobis{μ2-2-(piperazin-1-yl)-N-[1-(2-pyridyl)ethylidene]ethanamine}trizinc dihydrate
aDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: khaledi@siswa.um.edu.my
In the trinuclear title compound, [Zn3Cl6(C13H20N4)2]·2H2O, each terminal ZnII atom is coordinated by an N3 donor set from the Schiff base ligands and two Cl atoms in a distorted square-pyramidal geometry. The central ZnII atom is tetrahedrally coordinated by two piperazine N atoms from two Schiff base ligands and two Cl atoms. The piperazine rings adopt chair conformations. In the adjacent complex molecules are linked into a three-dimensional network via N—H⋯O, C—H⋯Cl and C—H⋯O hydrogen bonds. The structure includes two water molecules, one of which is disordered over two positions with occupancies of 0.753 (15) and 0.247 (15).
Related literature
For related structures, see: Mukhopadhyay et al. (2003); Xu et al. (2008). For a description of the geometry of complexes with five-coordinate metal ions, see: Addison et al. (1984).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811027437/ci5190sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811027437/ci5190Isup2.hkl
A mixture of 4-(2-aminoethyl) piperazine (0.2 g, 1.55 mmol) and 2-acetylpyridine (0.19 g, 1.55 mmol) in ethanol (20 ml) was refluxed for 2 h and then an ethanolic solution of zinc (II) chloride (0.21 g, 1.55 mmol) was added. The resulting solution was refluxed for 30 min and then set aside at room temperature for a few days whereupon the prismatic crystals of the title compound were obtained.
The C-bound H atoms were placed at calculated positions and refined as riding on their parent atoms, with C–H = 0.95 (aryl), 0.98 (methyl) and 0.99 (methylene) Å. The N-bound H atoms were located in a difference Fourier map and refined with a N–H distance restraint of 0.91 (2) Å. For all H atoms Uiso(H) were set to 1.2 (1.5 for methyl) times the Ueq(carrier atom). H atoms of the water molecules could not be reliably located and were omitted from the
One of the water oxygen atoms (O2) is disordered over two positions with refined site occupancy factors of 0.753 (15) and 0.247 (15). An ISOR restraint (Sheldrick, 2008) was applied to the major component of the disordered water oxygen atom (O2).Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and publCIF (Westrip, 2010).Fig. 1. The molecular structure of the title compound (50% probability displacement ellipsoids). Only the major component of disordered O2 is shown. |
[Zn3Cl6(C13H20N4)2]·2H2O | Z = 2 |
Mr = 909.50 | F(000) = 928 |
Triclinic, P1 | Dx = 1.675 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.6060 (3) Å | Cell parameters from 5640 reflections |
b = 14.8850 (5) Å | θ = 2.6–29.0° |
c = 16.7153 (5) Å | µ = 2.46 mm−1 |
α = 72.570 (2)° | T = 100 K |
β = 86.834 (2)° | Prism, yellow |
γ = 88.936 (2)° | 0.21 × 0.12 × 0.09 mm |
V = 1802.78 (11) Å3 |
Bruker APEXII CCD diffractometer | 7831 independent reflections |
Radiation source: fine-focus sealed tube | 6241 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ϕ and ω scans | θmax = 27.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −9→9 |
Tmin = 0.626, Tmax = 0.809 | k = −18→19 |
16465 measured reflections | l = −21→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0573P)2 + 5.66P] where P = (Fo2 + 2Fc2)/3 |
7831 reflections | (Δ/σ)max = 0.001 |
424 parameters | Δρmax = 0.92 e Å−3 |
8 restraints | Δρmin = −1.31 e Å−3 |
[Zn3Cl6(C13H20N4)2]·2H2O | γ = 88.936 (2)° |
Mr = 909.50 | V = 1802.78 (11) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.6060 (3) Å | Mo Kα radiation |
b = 14.8850 (5) Å | µ = 2.46 mm−1 |
c = 16.7153 (5) Å | T = 100 K |
α = 72.570 (2)° | 0.21 × 0.12 × 0.09 mm |
β = 86.834 (2)° |
Bruker APEXII CCD diffractometer | 7831 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 6241 reflections with I > 2σ(I) |
Tmin = 0.626, Tmax = 0.809 | Rint = 0.024 |
16465 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 8 restraints |
wR(F2) = 0.127 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.92 e Å−3 |
7831 reflections | Δρmin = −1.31 e Å−3 |
424 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Zn1 | 0.60721 (6) | 0.60302 (3) | 0.15462 (3) | 0.01962 (12) | |
Zn2 | 0.54211 (8) | 0.26399 (4) | 0.44315 (3) | 0.03191 (15) | |
Zn3 | 0.96674 (6) | −0.03792 (3) | 0.78382 (3) | 0.01865 (12) | |
Cl1 | 0.32182 (14) | 0.57174 (8) | 0.20310 (7) | 0.0286 (2) | |
Cl2 | 0.76455 (14) | 0.49402 (7) | 0.11373 (6) | 0.0245 (2) | |
Cl3 | 0.25702 (18) | 0.28147 (10) | 0.47790 (9) | 0.0461 (3) | |
Cl4 | 0.6177 (2) | 0.18718 (10) | 0.35034 (8) | 0.0451 (3) | |
Cl5 | 0.82202 (14) | 0.06069 (7) | 0.84965 (6) | 0.0251 (2) | |
Cl6 | 1.24603 (14) | 0.01080 (8) | 0.74837 (7) | 0.0276 (2) | |
N1 | 0.5433 (4) | 0.6860 (2) | 0.0275 (2) | 0.0191 (7) | |
N2 | 0.6720 (5) | 0.7394 (2) | 0.1477 (2) | 0.0213 (7) | |
N3 | 0.7470 (5) | 0.5792 (2) | 0.2849 (2) | 0.0222 (7) | |
N4 | 0.6610 (5) | 0.3943 (3) | 0.4067 (2) | 0.0279 (8) | |
H4N | 0.724 (6) | 0.400 (4) | 0.450 (2) | 0.033* | |
N5 | 0.6552 (5) | 0.1858 (3) | 0.5515 (2) | 0.0302 (9) | |
H5N | 0.657 (7) | 0.210 (3) | 0.596 (2) | 0.036* | |
N6 | 0.8522 (5) | 0.0241 (3) | 0.6575 (2) | 0.0245 (8) | |
N7 | 0.9023 (5) | −0.1581 (2) | 0.7520 (2) | 0.0219 (7) | |
N8 | 1.0000 (4) | −0.1532 (2) | 0.8977 (2) | 0.0178 (7) | |
C1 | 0.4820 (6) | 0.6548 (3) | −0.0321 (3) | 0.0226 (9) | |
H1 | 0.4640 | 0.5891 | −0.0205 | 0.027* | |
C2 | 0.4431 (6) | 0.7137 (3) | −0.1103 (3) | 0.0236 (9) | |
H2 | 0.3980 | 0.6890 | −0.1512 | 0.028* | |
C3 | 0.4711 (6) | 0.8092 (3) | −0.1279 (3) | 0.0239 (9) | |
H3 | 0.4465 | 0.8515 | −0.1812 | 0.029* | |
C4 | 0.5359 (6) | 0.8422 (3) | −0.0658 (3) | 0.0217 (8) | |
H4 | 0.5566 | 0.9075 | −0.0762 | 0.026* | |
C5 | 0.5702 (5) | 0.7791 (3) | 0.0112 (2) | 0.0186 (8) | |
C6 | 0.6400 (5) | 0.8070 (3) | 0.0824 (3) | 0.0190 (8) | |
C7 | 0.6619 (7) | 0.9095 (3) | 0.0729 (3) | 0.0273 (10) | |
H7A | 0.5463 | 0.9377 | 0.0788 | 0.041* | |
H7B | 0.7166 | 0.9411 | 0.0174 | 0.041* | |
H7C | 0.7370 | 0.9167 | 0.1164 | 0.041* | |
C8 | 0.7424 (7) | 0.7540 (3) | 0.2227 (3) | 0.0275 (10) | |
H8A | 0.6448 | 0.7634 | 0.2612 | 0.033* | |
H8B | 0.8182 | 0.8106 | 0.2067 | 0.033* | |
C9 | 0.8485 (6) | 0.6676 (3) | 0.2656 (3) | 0.0273 (10) | |
H9A | 0.9531 | 0.6636 | 0.2288 | 0.033* | |
H9B | 0.8906 | 0.6745 | 0.3184 | 0.033* | |
C10 | 0.8763 (6) | 0.5001 (3) | 0.3062 (3) | 0.0265 (9) | |
H10A | 0.9482 | 0.5061 | 0.3519 | 0.032* | |
H10B | 0.9566 | 0.5042 | 0.2565 | 0.032* | |
C11 | 0.7864 (6) | 0.4050 (3) | 0.3335 (3) | 0.0266 (9) | |
H11A | 0.7224 | 0.3970 | 0.2861 | 0.032* | |
H11B | 0.8768 | 0.3549 | 0.3480 | 0.032* | |
C12 | 0.6261 (6) | 0.5688 (3) | 0.3592 (3) | 0.0274 (10) | |
H12A | 0.5362 | 0.6193 | 0.3459 | 0.033* | |
H12B | 0.6933 | 0.5762 | 0.4059 | 0.033* | |
C13 | 0.5352 (6) | 0.4741 (3) | 0.3870 (3) | 0.0286 (10) | |
H13A | 0.4573 | 0.4701 | 0.4373 | 0.034* | |
H13B | 0.4606 | 0.4689 | 0.3419 | 0.034* | |
C14 | 0.8469 (7) | 0.1730 (4) | 0.5366 (3) | 0.0367 (12) | |
H14A | 0.9034 | 0.2355 | 0.5142 | 0.044* | |
H14B | 0.8655 | 0.1394 | 0.4939 | 0.044* | |
C15 | 0.9338 (6) | 0.1179 (3) | 0.6160 (3) | 0.0321 (11) | |
H15A | 1.0598 | 0.1088 | 0.6020 | 0.039* | |
H15B | 0.9274 | 0.1553 | 0.6560 | 0.039* | |
C16 | 0.5725 (6) | 0.0910 (3) | 0.5870 (3) | 0.0304 (10) | |
H16A | 0.5846 | 0.0562 | 0.5449 | 0.036* | |
H16B | 0.4453 | 0.0985 | 0.5995 | 0.036* | |
C17 | 0.6584 (6) | 0.0347 (3) | 0.6668 (3) | 0.0271 (9) | |
H17A | 0.6317 | 0.0658 | 0.7108 | 0.033* | |
H17B | 0.6048 | −0.0288 | 0.6865 | 0.033* | |
C18 | 0.9066 (7) | −0.0458 (3) | 0.6135 (3) | 0.0340 (11) | |
H18A | 1.0359 | −0.0432 | 0.6025 | 0.041* | |
H18B | 0.8510 | −0.0298 | 0.5588 | 0.041* | |
C19 | 0.8535 (7) | −0.1444 (3) | 0.6655 (3) | 0.0319 (11) | |
H19A | 0.7249 | −0.1527 | 0.6641 | 0.038* | |
H19B | 0.9146 | −0.1913 | 0.6425 | 0.038* | |
C20 | 0.8598 (6) | −0.3303 (3) | 0.7939 (3) | 0.0281 (10) | |
H20A | 0.8195 | −0.3189 | 0.7371 | 0.042* | |
H20B | 0.7658 | −0.3608 | 0.8350 | 0.042* | |
H20C | 0.9638 | −0.3713 | 0.8013 | 0.042* | |
C21 | 0.9060 (5) | −0.2388 (3) | 0.8068 (3) | 0.0205 (8) | |
C22 | 0.9658 (5) | −0.2394 (3) | 0.8906 (2) | 0.0175 (8) | |
C23 | 0.9890 (5) | −0.3205 (3) | 0.9555 (3) | 0.0217 (8) | |
H23 | 0.9601 | −0.3801 | 0.9499 | 0.026* | |
C24 | 1.0555 (6) | −0.3137 (3) | 1.0295 (3) | 0.0243 (9) | |
H24 | 1.0755 | −0.3689 | 1.0746 | 0.029* | |
C25 | 1.0917 (5) | −0.2263 (3) | 1.0365 (3) | 0.0225 (9) | |
H25 | 1.1370 | −0.2201 | 1.0864 | 0.027* | |
C26 | 1.0607 (5) | −0.1473 (3) | 0.9690 (3) | 0.0216 (8) | |
H26 | 1.0838 | −0.0868 | 0.9742 | 0.026* | |
O1 | 0.2839 (6) | 0.7374 (3) | 0.2857 (3) | 0.0589 (12) | |
O2 | 0.1410 (14) | 0.6105 (5) | 0.4450 (5) | 0.087 (3) | 0.753 (15) |
O2' | 0.007 (3) | 0.5754 (12) | 0.4953 (12) | 0.053 (8) | 0.247 (15) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0219 (3) | 0.0135 (2) | 0.0220 (2) | −0.00288 (18) | −0.00124 (19) | −0.00282 (18) |
Zn2 | 0.0386 (3) | 0.0274 (3) | 0.0255 (3) | −0.0038 (2) | −0.0047 (2) | −0.0007 (2) |
Zn3 | 0.0221 (2) | 0.0161 (2) | 0.0160 (2) | −0.00138 (18) | 0.00034 (18) | −0.00237 (17) |
Cl1 | 0.0213 (5) | 0.0296 (6) | 0.0287 (5) | −0.0036 (4) | −0.0022 (4) | 0.0009 (4) |
Cl2 | 0.0298 (6) | 0.0179 (5) | 0.0266 (5) | 0.0028 (4) | −0.0043 (4) | −0.0074 (4) |
Cl3 | 0.0356 (7) | 0.0509 (8) | 0.0476 (8) | −0.0113 (6) | −0.0041 (6) | −0.0075 (6) |
Cl4 | 0.0651 (9) | 0.0370 (7) | 0.0349 (7) | −0.0077 (6) | −0.0039 (6) | −0.0127 (5) |
Cl5 | 0.0317 (6) | 0.0201 (5) | 0.0239 (5) | 0.0007 (4) | 0.0017 (4) | −0.0079 (4) |
Cl6 | 0.0233 (5) | 0.0270 (5) | 0.0275 (5) | −0.0015 (4) | 0.0008 (4) | −0.0009 (4) |
N1 | 0.0188 (17) | 0.0145 (16) | 0.0227 (17) | −0.0017 (13) | −0.0006 (14) | −0.0034 (13) |
N2 | 0.0224 (18) | 0.0176 (17) | 0.0236 (18) | −0.0029 (14) | −0.0039 (14) | −0.0050 (14) |
N3 | 0.0266 (19) | 0.0172 (17) | 0.0217 (17) | −0.0053 (14) | −0.0024 (14) | −0.0035 (14) |
N4 | 0.032 (2) | 0.025 (2) | 0.0221 (18) | −0.0021 (16) | −0.0055 (16) | 0.0000 (15) |
N5 | 0.029 (2) | 0.031 (2) | 0.0248 (19) | 0.0015 (17) | −0.0018 (16) | 0.0010 (16) |
N6 | 0.0255 (19) | 0.0244 (19) | 0.0184 (17) | 0.0008 (15) | 0.0018 (14) | 0.0008 (14) |
N7 | 0.0265 (19) | 0.0231 (18) | 0.0180 (17) | 0.0014 (15) | −0.0047 (14) | −0.0084 (14) |
N8 | 0.0173 (17) | 0.0176 (17) | 0.0172 (16) | −0.0018 (13) | 0.0001 (13) | −0.0032 (13) |
C1 | 0.024 (2) | 0.020 (2) | 0.023 (2) | −0.0011 (17) | 0.0003 (17) | −0.0058 (16) |
C2 | 0.020 (2) | 0.028 (2) | 0.024 (2) | −0.0028 (17) | −0.0017 (17) | −0.0084 (17) |
C3 | 0.022 (2) | 0.022 (2) | 0.023 (2) | 0.0003 (17) | 0.0011 (17) | −0.0013 (17) |
C4 | 0.023 (2) | 0.0137 (19) | 0.026 (2) | −0.0008 (16) | 0.0028 (17) | −0.0025 (16) |
C5 | 0.0151 (19) | 0.0168 (19) | 0.022 (2) | 0.0001 (15) | 0.0036 (15) | −0.0040 (15) |
C6 | 0.0170 (19) | 0.0138 (19) | 0.025 (2) | −0.0009 (15) | 0.0023 (16) | −0.0044 (15) |
C7 | 0.041 (3) | 0.014 (2) | 0.026 (2) | −0.0017 (18) | −0.0008 (19) | −0.0035 (17) |
C8 | 0.041 (3) | 0.016 (2) | 0.027 (2) | −0.0053 (18) | −0.0080 (19) | −0.0063 (17) |
C9 | 0.029 (2) | 0.025 (2) | 0.028 (2) | −0.0038 (18) | −0.0091 (18) | −0.0055 (18) |
C10 | 0.025 (2) | 0.024 (2) | 0.030 (2) | 0.0022 (18) | −0.0046 (18) | −0.0060 (18) |
C11 | 0.030 (2) | 0.023 (2) | 0.025 (2) | 0.0012 (18) | −0.0010 (18) | −0.0049 (17) |
C12 | 0.035 (3) | 0.026 (2) | 0.021 (2) | 0.0035 (19) | −0.0014 (18) | −0.0073 (17) |
C13 | 0.029 (2) | 0.029 (2) | 0.024 (2) | −0.0008 (19) | 0.0014 (18) | −0.0037 (18) |
C14 | 0.032 (3) | 0.036 (3) | 0.030 (2) | 0.001 (2) | 0.003 (2) | 0.006 (2) |
C15 | 0.024 (2) | 0.034 (3) | 0.027 (2) | −0.0012 (19) | 0.0006 (18) | 0.0079 (19) |
C16 | 0.031 (2) | 0.030 (2) | 0.025 (2) | −0.005 (2) | 0.0005 (19) | −0.0008 (19) |
C17 | 0.025 (2) | 0.027 (2) | 0.024 (2) | −0.0038 (18) | 0.0009 (17) | 0.0003 (18) |
C18 | 0.047 (3) | 0.036 (3) | 0.016 (2) | 0.009 (2) | −0.0018 (19) | −0.0036 (18) |
C19 | 0.046 (3) | 0.034 (3) | 0.021 (2) | 0.008 (2) | −0.008 (2) | −0.0153 (19) |
C20 | 0.031 (2) | 0.021 (2) | 0.036 (2) | 0.0013 (18) | −0.0056 (19) | −0.0131 (19) |
C21 | 0.0155 (19) | 0.022 (2) | 0.024 (2) | 0.0014 (16) | −0.0010 (16) | −0.0082 (16) |
C22 | 0.0154 (19) | 0.0169 (19) | 0.0194 (19) | 0.0000 (15) | 0.0011 (15) | −0.0045 (15) |
C23 | 0.021 (2) | 0.0170 (19) | 0.026 (2) | 0.0000 (16) | 0.0019 (16) | −0.0043 (16) |
C24 | 0.023 (2) | 0.022 (2) | 0.022 (2) | 0.0027 (17) | −0.0004 (17) | 0.0014 (17) |
C25 | 0.019 (2) | 0.029 (2) | 0.018 (2) | −0.0014 (17) | −0.0002 (16) | −0.0044 (17) |
C26 | 0.021 (2) | 0.022 (2) | 0.022 (2) | −0.0041 (16) | 0.0002 (16) | −0.0067 (16) |
O1 | 0.061 (3) | 0.048 (3) | 0.072 (3) | 0.017 (2) | −0.023 (2) | −0.022 (2) |
O2 | 0.139 (7) | 0.064 (4) | 0.064 (5) | −0.018 (4) | −0.060 (5) | −0.016 (3) |
O2' | 0.082 (16) | 0.034 (10) | 0.048 (12) | −0.001 (9) | −0.041 (11) | −0.014 (8) |
Zn1—N2 | 2.066 (3) | C7—H7B | 0.98 |
Zn1—N1 | 2.190 (3) | C7—H7C | 0.98 |
Zn1—Cl2 | 2.2436 (11) | C8—C9 | 1.514 (6) |
Zn1—Cl1 | 2.2809 (11) | C8—H8A | 0.99 |
Zn1—N3 | 2.404 (3) | C8—H8B | 0.99 |
Zn2—N5 | 2.061 (4) | C9—H9A | 0.99 |
Zn2—N4 | 2.061 (4) | C9—H9B | 0.99 |
Zn2—Cl4 | 2.2325 (15) | C10—C11 | 1.514 (6) |
Zn2—Cl3 | 2.2445 (15) | C10—H10A | 0.99 |
Zn3—N7 | 2.086 (3) | C10—H10B | 0.99 |
Zn3—N8 | 2.170 (3) | C11—H11A | 0.99 |
Zn3—Cl6 | 2.2473 (12) | C11—H11B | 0.99 |
Zn3—N6 | 2.253 (3) | C12—C13 | 1.513 (6) |
Zn3—Cl5 | 2.3132 (11) | C12—H12A | 0.99 |
N1—C1 | 1.328 (5) | C12—H12B | 0.99 |
N1—C5 | 1.348 (5) | C13—H13A | 0.99 |
N2—C6 | 1.276 (5) | C13—H13B | 0.99 |
N2—C8 | 1.465 (5) | C14—C15 | 1.514 (6) |
N3—C12 | 1.475 (6) | C14—H14A | 0.99 |
N3—C9 | 1.479 (5) | C14—H14B | 0.99 |
N3—C10 | 1.492 (6) | C15—H15A | 0.99 |
N4—C11 | 1.480 (6) | C15—H15B | 0.99 |
N4—C13 | 1.481 (6) | C16—C17 | 1.522 (6) |
N4—H4N | 0.910 (19) | C16—H16A | 0.99 |
N5—C14 | 1.484 (6) | C16—H16B | 0.99 |
N5—C16 | 1.492 (6) | C17—H17A | 0.99 |
N5—H5N | 0.916 (19) | C17—H17B | 0.99 |
N6—C18 | 1.484 (6) | C18—C19 | 1.514 (7) |
N6—C17 | 1.484 (6) | C18—H18A | 0.99 |
N6—C15 | 1.490 (6) | C18—H18B | 0.99 |
N7—C21 | 1.275 (5) | C19—H19A | 0.99 |
N7—C19 | 1.467 (5) | C19—H19B | 0.99 |
N8—C26 | 1.331 (5) | C20—C21 | 1.493 (6) |
N8—C22 | 1.354 (5) | C20—H20A | 0.98 |
C1—C2 | 1.383 (6) | C20—H20B | 0.98 |
C1—H1 | 0.95 | C20—H20C | 0.98 |
C2—C3 | 1.381 (6) | C21—C22 | 1.494 (6) |
C2—H2 | 0.95 | C22—C23 | 1.376 (6) |
C3—C4 | 1.389 (6) | C23—C24 | 1.393 (6) |
C3—H3 | 0.95 | C23—H23 | 0.95 |
C4—C5 | 1.381 (6) | C24—C25 | 1.374 (6) |
C4—H4 | 0.95 | C24—H24 | 0.95 |
C5—C6 | 1.499 (6) | C25—C26 | 1.391 (6) |
C6—C7 | 1.497 (5) | C25—H25 | 0.95 |
C7—H7A | 0.98 | C26—H26 | 0.95 |
N2—Zn1—N1 | 75.73 (13) | H8A—C8—H8B | 108.4 |
N2—Zn1—Cl2 | 130.04 (11) | N3—C9—C8 | 113.1 (4) |
N1—Zn1—Cl2 | 95.06 (9) | N3—C9—H9A | 109.0 |
N2—Zn1—Cl1 | 110.48 (11) | C8—C9—H9A | 109.0 |
N1—Zn1—Cl1 | 95.26 (9) | N3—C9—H9B | 109.0 |
Cl2—Zn1—Cl1 | 119.30 (4) | C8—C9—H9B | 109.0 |
N2—Zn1—N3 | 78.63 (13) | H9A—C9—H9B | 107.8 |
N1—Zn1—N3 | 153.39 (12) | N3—C10—C11 | 111.9 (4) |
Cl2—Zn1—N3 | 95.99 (9) | N3—C10—H10A | 109.2 |
Cl1—Zn1—N3 | 100.26 (9) | C11—C10—H10A | 109.2 |
N5—Zn2—N4 | 107.07 (16) | N3—C10—H10B | 109.2 |
N5—Zn2—Cl4 | 103.95 (13) | C11—C10—H10B | 109.2 |
N4—Zn2—Cl4 | 109.56 (12) | H10A—C10—H10B | 107.9 |
N5—Zn2—Cl3 | 106.53 (12) | N4—C11—C10 | 112.4 (4) |
N4—Zn2—Cl3 | 108.81 (12) | N4—C11—H11A | 109.1 |
Cl4—Zn2—Cl3 | 120.10 (6) | C10—C11—H11A | 109.1 |
N7—Zn3—N8 | 75.48 (13) | N4—C11—H11B | 109.1 |
N7—Zn3—Cl6 | 114.52 (11) | C10—C11—H11B | 109.1 |
N8—Zn3—Cl6 | 101.42 (9) | H11A—C11—H11B | 107.9 |
N7—Zn3—N6 | 77.89 (13) | N3—C12—C13 | 112.1 (4) |
N8—Zn3—N6 | 151.58 (13) | N3—C12—H12A | 109.2 |
Cl6—Zn3—N6 | 98.48 (10) | C13—C12—H12A | 109.2 |
N7—Zn3—Cl5 | 135.93 (11) | N3—C12—H12B | 109.2 |
N8—Zn3—Cl5 | 95.60 (9) | C13—C12—H12B | 109.2 |
Cl6—Zn3—Cl5 | 109.54 (4) | H12A—C12—H12B | 107.9 |
N6—Zn3—Cl5 | 96.62 (10) | N4—C13—C12 | 112.7 (4) |
C1—N1—C5 | 118.7 (3) | N4—C13—H13A | 109.1 |
C1—N1—Zn1 | 127.6 (3) | C12—C13—H13A | 109.1 |
C5—N1—Zn1 | 113.7 (3) | N4—C13—H13B | 109.1 |
C6—N2—C8 | 122.9 (4) | C12—C13—H13B | 109.1 |
C6—N2—Zn1 | 120.1 (3) | H13A—C13—H13B | 107.8 |
C8—N2—Zn1 | 116.9 (3) | N5—C14—C15 | 112.2 (4) |
C12—N3—C9 | 110.6 (3) | N5—C14—H14A | 109.2 |
C12—N3—C10 | 107.7 (3) | C15—C14—H14A | 109.2 |
C9—N3—C10 | 107.0 (3) | N5—C14—H14B | 109.2 |
C12—N3—Zn1 | 115.3 (3) | C15—C14—H14B | 109.2 |
C9—N3—Zn1 | 100.3 (2) | H14A—C14—H14B | 107.9 |
C10—N3—Zn1 | 115.5 (3) | N6—C15—C14 | 113.5 (4) |
C11—N4—C13 | 108.7 (3) | N6—C15—H15A | 108.9 |
C11—N4—Zn2 | 111.6 (3) | C14—C15—H15A | 108.9 |
C13—N4—Zn2 | 113.8 (3) | N6—C15—H15B | 108.9 |
C11—N4—H4N | 107 (3) | C14—C15—H15B | 108.9 |
C13—N4—H4N | 106 (3) | H15A—C15—H15B | 107.7 |
Zn2—N4—H4N | 109 (3) | N5—C16—C17 | 111.1 (4) |
C14—N5—C16 | 108.5 (4) | N5—C16—H16A | 109.4 |
C14—N5—Zn2 | 111.3 (3) | C17—C16—H16A | 109.4 |
C16—N5—Zn2 | 112.2 (3) | N5—C16—H16B | 109.4 |
C14—N5—H5N | 100 (4) | C17—C16—H16B | 109.4 |
C16—N5—H5N | 105 (3) | H16A—C16—H16B | 108.0 |
Zn2—N5—H5N | 118 (3) | N6—C17—C16 | 114.6 (4) |
C18—N6—C17 | 113.5 (4) | N6—C17—H17A | 108.6 |
C18—N6—C15 | 111.8 (4) | C16—C17—H17A | 108.6 |
C17—N6—C15 | 109.7 (3) | N6—C17—H17B | 108.6 |
C18—N6—Zn3 | 102.0 (3) | C16—C17—H17B | 108.6 |
C17—N6—Zn3 | 110.7 (2) | H17A—C17—H17B | 107.6 |
C15—N6—Zn3 | 108.9 (3) | N6—C18—C19 | 111.1 (4) |
C21—N7—C19 | 122.9 (4) | N6—C18—H18A | 109.4 |
C21—N7—Zn3 | 120.1 (3) | C19—C18—H18A | 109.4 |
C19—N7—Zn3 | 117.0 (3) | N6—C18—H18B | 109.4 |
C26—N8—C22 | 118.7 (3) | C19—C18—H18B | 109.4 |
C26—N8—Zn3 | 126.7 (3) | H18A—C18—H18B | 108.0 |
C22—N8—Zn3 | 114.4 (3) | N7—C19—C18 | 108.2 (4) |
N1—C1—C2 | 123.0 (4) | N7—C19—H19A | 110.1 |
N1—C1—H1 | 118.5 | C18—C19—H19A | 110.1 |
C2—C1—H1 | 118.5 | N7—C19—H19B | 110.1 |
C3—C2—C1 | 118.7 (4) | C18—C19—H19B | 110.1 |
C3—C2—H2 | 120.6 | H19A—C19—H19B | 108.4 |
C1—C2—H2 | 120.6 | C21—C20—H20A | 109.5 |
C2—C3—C4 | 118.5 (4) | C21—C20—H20B | 109.5 |
C2—C3—H3 | 120.7 | H20A—C20—H20B | 109.5 |
C4—C3—H3 | 120.7 | C21—C20—H20C | 109.5 |
C5—C4—C3 | 119.5 (4) | H20A—C20—H20C | 109.5 |
C5—C4—H4 | 120.3 | H20B—C20—H20C | 109.5 |
C3—C4—H4 | 120.3 | N7—C21—C20 | 126.1 (4) |
N1—C5—C4 | 121.6 (4) | N7—C21—C22 | 115.3 (4) |
N1—C5—C6 | 114.6 (3) | C20—C21—C22 | 118.5 (4) |
C4—C5—C6 | 123.8 (4) | N8—C22—C23 | 122.0 (4) |
N2—C6—C7 | 125.5 (4) | N8—C22—C21 | 114.6 (3) |
N2—C6—C5 | 115.7 (4) | C23—C22—C21 | 123.4 (4) |
C7—C6—C5 | 118.8 (3) | C22—C23—C24 | 118.9 (4) |
C6—C7—H7A | 109.5 | C22—C23—H23 | 120.6 |
C6—C7—H7B | 109.5 | C24—C23—H23 | 120.6 |
H7A—C7—H7B | 109.5 | C25—C24—C23 | 119.2 (4) |
C6—C7—H7C | 109.5 | C25—C24—H24 | 120.4 |
H7A—C7—H7C | 109.5 | C23—C24—H24 | 120.4 |
H7B—C7—H7C | 109.5 | C24—C25—C26 | 118.7 (4) |
N2—C8—C9 | 107.9 (4) | C24—C25—H25 | 120.6 |
N2—C8—H8A | 110.1 | C26—C25—H25 | 120.6 |
C9—C8—H8A | 110.1 | N8—C26—C25 | 122.4 (4) |
N2—C8—H8B | 110.1 | N8—C26—H26 | 118.8 |
C9—C8—H8B | 110.1 | C25—C26—H26 | 118.8 |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4N···O2i | 0.91 (2) | 2.05 (2) | 2.953 (7) | 170 (5) |
N5—H5N···O1i | 0.92 (2) | 2.41 (2) | 3.310 (6) | 169 (5) |
C3—H3···Cl6ii | 0.95 | 2.78 | 3.563 (4) | 140 |
C7—H7C···Cl6iii | 0.98 | 2.79 | 3.634 (5) | 144 |
C14—H14A···Cl3iv | 0.99 | 2.78 | 3.493 (5) | 130 |
C16—H16B···Cl6v | 0.99 | 2.81 | 3.509 (5) | 128 |
C19—H19A···Cl4vi | 0.99 | 2.70 | 3.689 (6) | 174 |
C11—H11A···Cl2 | 0.99 | 2.81 | 3.524 (5) | 129 |
C13—H13B···Cl1 | 0.99 | 2.63 | 3.461 (5) | 141 |
C17—H17A···Cl5 | 0.99 | 2.78 | 3.491 (5) | 129 |
C14—H14A···O2i | 0.99 | 2.59 | 3.331 (9) | 131 |
C15—H15B···O1i | 0.99 | 2.60 | 3.431 (7) | 142 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1, y+1, z−1; (iii) −x+2, −y+1, −z+1; (iv) x+1, y, z; (v) x−1, y, z; (vi) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Zn3Cl6(C13H20N4)2]·2H2O |
Mr | 909.50 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 7.6060 (3), 14.8850 (5), 16.7153 (5) |
α, β, γ (°) | 72.570 (2), 86.834 (2), 88.936 (2) |
V (Å3) | 1802.78 (11) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 2.46 |
Crystal size (mm) | 0.21 × 0.12 × 0.09 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.626, 0.809 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16465, 7831, 6241 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.127, 1.04 |
No. of reflections | 7831 |
No. of parameters | 424 |
No. of restraints | 8 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.92, −1.31 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), X-SEED (Barbour, 2001), SHELXL97 (Sheldrick, 2008) and publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4N···O2i | 0.91 (2) | 2.05 (2) | 2.953 (7) | 170 (5) |
N5—H5N···O1i | 0.92 (2) | 2.41 (2) | 3.310 (6) | 169 (5) |
C3—H3···Cl6ii | 0.95 | 2.78 | 3.563 (4) | 140 |
C7—H7C···Cl6iii | 0.98 | 2.79 | 3.634 (5) | 144 |
C14—H14A···Cl3iv | 0.99 | 2.78 | 3.493 (5) | 130 |
C16—H16B···Cl6v | 0.99 | 2.81 | 3.509 (5) | 128 |
C19—H19A···Cl4vi | 0.99 | 2.70 | 3.689 (6) | 174 |
C11—H11A···Cl2 | 0.99 | 2.81 | 3.524 (5) | 129 |
C13—H13B···Cl1 | 0.99 | 2.63 | 3.461 (5) | 141 |
C17—H17A···Cl5 | 0.99 | 2.78 | 3.491 (5) | 129 |
C14—H14A···O2i | 0.99 | 2.59 | 3.331 (9) | 131 |
C15—H15B···O1i | 0.99 | 2.60 | 3.431 (7) | 142 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1, y+1, z−1; (iii) −x+2, −y+1, −z+1; (iv) x+1, y, z; (v) x−1, y, z; (vi) −x+1, −y, −z+1. |
Acknowledgements
The authors thank the University of Malaya for funding this study (FRGS grant No. FP004/2010B).
References
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It has been shown that ligands having piperazine ring, depending on the ring conformation (chair or boat), may display ambidentate ligation behavior (Mukhopadhyay et al., 2003; Xu et al., 2008). The title compound was obtained upon the reaction of the in situ prepared Schiff base, 2-piperazino-N-[1-(2-pyridyl)ethylidene]ethanamine, with zinc(II) chloride. As shown in Fig. 1, the compound contains three unique metal centers. One Schiff base ligand chelates each of the two terminal zinc atoms via three N atoms. The piperazine rings assume chair conformations and their nitrogen atoms, N4 and N5, which stay away from chelation, are coordinated to the central zinc atom. Within the resulting trinuclear zinc complex, the metal atoms are separated by 5.8498 (7) Å (Zn1···Zn2) and 7.0153 (7) Å (Zn2···Zn3). The coordination environment around each metal center is completed by two Cl atoms, resulting in a tetrahedral geometry for the central ZnII ion and square-pyramidal geometries for the terminal zinc atoms (τ = 0.39 and 0.26 for Zn1 and Zn3 centers, respectively, Addison et al., 1984). The crystal structure contains intra- and intermolecular C—H···Cl interactions (Table 1). The latter connect the adjacent metal complexes into a three-dimensional network. The complex is N—H···O and C—H···O hydrogen bonded to two molecules of water, one of which being disordered between two sites.