organic compounds
N′-(3,4-Dimethoxybenzylidene)-3,5-dihydroxybenzohydrazide methanol monosolvate
aCollege of Chemistry and Chemical Engineering, Chongqing University, Chongqing 400030, People's Republic of China, bDepartment of Immunology, Basic Medical College, Chongqing Medical University, Chongqing 400016, People's Republic of China, and cSchool of Pharmacy, Dalian Medical University, Dalian 116044, People's Republic of China
*Correspondence e-mail: zhangqh11@126.com
In the title compound, C16H16N2O5·CH4O, the two benzene rings in the Schiff base molecule form a dihedral angle of 17.1 (1)°. In the crystal, intermolecular O—H⋯O hydrogen bonds link the components into corrugated sheets parallel to the (101) plane.
Related literature
For the crystal structures of related Schiff base compounds, see: Deng et al. (2009); Huang et al. (2008). For antibacterial and antitumor activities of Schiff base complexes, see: Brückner et al. (2000); Harrop et al. (2003); Ren et al. (2002).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell APEX2; data reduction: SAINT-Plus (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811029850/cv5134sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811029850/cv5134Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811029850/cv5134Isup3.cml
3,5-Dihydroxybenzhydrazide (0.1 mmol,16.8 mg) and 3,4-dimethoxybenzaldehyde (0.1 mmol, 16.6 mg) were dissolved in a methanol solution (10 ml). The mixture was stirred at room temperature for 20 minutes and filtered. After keeping the filtrate in air for three days, colourless block-like crystals were formed.
The H18 atom bonded to N1 was located in a difference map and refined isotropically, Other H atoms were placed in geometrically idealized positions (C—H 0.93-0.97 Å; O—H 0.82 Å), and allowed to ride on their parent atoms, with Uiso(H)=1.2-1.5 Ueq of the parent atom.
Data collection: APEX2 (Bruker, 2007); cell
APEX2 (Bruker, 2007); data reduction: SAINT-Plus (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of (I) showing the atomic numbering and 30% probability displacement ellipsoids. Dashed line denotes hydrogen bond. |
C16H16N2O5·CH4O | F(000) = 736 |
Mr = 348.35 | Dx = 1.365 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P2ybc | Cell parameters from 1340 reflections |
a = 12.467 (3) Å | θ = 2.3–21.1° |
b = 12.201 (3) Å | µ = 0.10 mm−1 |
c = 11.149 (3) Å | T = 295 K |
β = 91.191 (3)° | Block, colourless |
V = 1695.5 (7) Å3 | 0.22 × 0.18 × 0.15 mm |
Z = 4 |
Bruker APEXII CCD diffractometer | 1794 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.041 |
Graphite monochromator | θmax = 25.0°, θmin = 2.3° |
phi and ω scans | h = −14→11 |
8351 measured reflections | k = −14→12 |
2984 independent reflections | l = −12→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.055 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.162 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0897P)2] where P = (Fo2 + 2Fc2)/3 |
2984 reflections | (Δ/σ)max < 0.001 |
236 parameters | Δρmax = 0.68 e Å−3 |
0 restraints | Δρmin = −0.32 e Å−3 |
C16H16N2O5·CH4O | V = 1695.5 (7) Å3 |
Mr = 348.35 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.467 (3) Å | µ = 0.10 mm−1 |
b = 12.201 (3) Å | T = 295 K |
c = 11.149 (3) Å | 0.22 × 0.18 × 0.15 mm |
β = 91.191 (3)° |
Bruker APEXII CCD diffractometer | 1794 reflections with I > 2σ(I) |
8351 measured reflections | Rint = 0.041 |
2984 independent reflections |
R[F2 > 2σ(F2)] = 0.055 | 0 restraints |
wR(F2) = 0.162 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.68 e Å−3 |
2984 reflections | Δρmin = −0.32 e Å−3 |
236 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
H18 | 0.492 (3) | 0.340 (3) | 0.619 (3) | 0.067 (11)* | |
N2 | 0.38492 (18) | 0.42464 (18) | 0.54230 (19) | 0.0425 (6) | |
O5 | 0.44125 (17) | 0.56294 (14) | 0.72026 (18) | 0.0515 (5) | |
O1 | 0.65292 (18) | 0.18020 (14) | 0.96344 (19) | 0.0601 (7) | |
H1 | 0.6297 | 0.1410 | 0.9091 | 0.090* | |
O2 | 0.70583 (18) | 0.55400 (15) | 1.06156 (18) | 0.0544 (6) | |
H2 | 0.7458 | 0.5258 | 1.1121 | 0.082* | |
N1 | 0.4573 (2) | 0.3984 (2) | 0.6318 (2) | 0.0430 (6) | |
C8 | 0.3653 (2) | 0.3502 (2) | 0.4648 (2) | 0.0421 (7) | |
H8 | 0.4011 | 0.2835 | 0.4716 | 0.051* | |
C9 | 0.2892 (2) | 0.3658 (2) | 0.3669 (2) | 0.0402 (7) | |
C4 | 0.5705 (2) | 0.3194 (2) | 0.8382 (2) | 0.0390 (7) | |
H4 | 0.5406 | 0.2673 | 0.7867 | 0.047* | |
C6 | 0.5969 (2) | 0.5075 (2) | 0.8954 (2) | 0.0387 (7) | |
H6A | 0.5834 | 0.5817 | 0.8830 | 0.046* | |
C7 | 0.4798 (2) | 0.4703 (2) | 0.7203 (2) | 0.0373 (6) | |
O3 | 0.10563 (17) | 0.57181 (16) | 0.23529 (19) | 0.0611 (6) | |
O4 | 0.06565 (17) | 0.41280 (18) | 0.09236 (18) | 0.0589 (6) | |
C1 | 0.6621 (2) | 0.4745 (2) | 0.9900 (2) | 0.0381 (7) | |
C2 | 0.6813 (2) | 0.3649 (2) | 1.0103 (2) | 0.0411 (7) | |
H2A | 0.7253 | 0.3430 | 1.0743 | 0.049* | |
C5 | 0.5515 (2) | 0.43046 (19) | 0.8190 (2) | 0.0348 (6) | |
C14 | 0.2689 (2) | 0.2816 (2) | 0.2869 (2) | 0.0450 (7) | |
H14 | 0.3055 | 0.2156 | 0.2958 | 0.054* | |
C11 | 0.1620 (2) | 0.4774 (2) | 0.2587 (2) | 0.0423 (7) | |
C10 | 0.2352 (2) | 0.4653 (2) | 0.3514 (2) | 0.0411 (7) | |
H10 | 0.2488 | 0.5232 | 0.4038 | 0.049* | |
C12 | 0.1404 (2) | 0.3909 (2) | 0.1795 (2) | 0.0443 (7) | |
C3 | 0.6346 (2) | 0.2874 (2) | 0.9350 (2) | 0.0400 (7) | |
C13 | 0.1950 (2) | 0.2940 (2) | 0.1939 (3) | 0.0479 (8) | |
H13 | 0.1821 | 0.2365 | 0.1409 | 0.058* | |
C16 | 0.0472 (3) | 0.3318 (3) | 0.0018 (3) | 0.0626 (9) | |
H16A | 0.1120 | 0.3200 | −0.0414 | 0.094* | |
H16B | −0.0083 | 0.3565 | −0.0527 | 0.094* | |
H16C | 0.0255 | 0.2644 | 0.0386 | 0.094* | |
C15 | 0.1393 (3) | 0.6683 (3) | 0.2954 (3) | 0.0755 (11) | |
H15A | 0.1316 | 0.6589 | 0.3803 | 0.113* | |
H15B | 0.0961 | 0.7289 | 0.2684 | 0.113* | |
H15C | 0.2132 | 0.6825 | 0.2783 | 0.113* | |
C17 | 0.8698 (4) | 0.4724 (4) | 1.3338 (3) | 0.0897 (13) | |
H17A | 0.9159 | 0.5304 | 1.3616 | 0.135* | |
H17B | 0.8985 | 0.4032 | 1.3598 | 0.135* | |
H17C | 0.7995 | 0.4821 | 1.3658 | 0.135* | |
O6 | 0.8632 (2) | 0.4745 (3) | 1.2114 (3) | 0.1058 (10) | |
H6 | 0.9237 | 0.4726 | 1.1841 | 0.159* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N2 | 0.0467 (14) | 0.0457 (14) | 0.0346 (13) | 0.0035 (11) | −0.0118 (11) | 0.0033 (11) |
O5 | 0.0674 (14) | 0.0377 (11) | 0.0485 (12) | 0.0063 (10) | −0.0173 (10) | 0.0032 (9) |
O1 | 0.0853 (17) | 0.0318 (11) | 0.0617 (14) | 0.0043 (10) | −0.0389 (12) | −0.0004 (9) |
O2 | 0.0710 (15) | 0.0387 (11) | 0.0526 (13) | −0.0065 (10) | −0.0229 (11) | −0.0088 (9) |
N1 | 0.0514 (15) | 0.0414 (14) | 0.0354 (13) | 0.0094 (12) | −0.0155 (11) | −0.0022 (11) |
C8 | 0.0459 (17) | 0.0409 (15) | 0.0392 (16) | 0.0054 (13) | −0.0074 (13) | 0.0040 (13) |
C9 | 0.0420 (17) | 0.0450 (16) | 0.0333 (15) | −0.0011 (13) | −0.0075 (13) | 0.0039 (12) |
C4 | 0.0471 (17) | 0.0339 (14) | 0.0356 (15) | −0.0042 (12) | −0.0097 (13) | −0.0023 (11) |
C6 | 0.0468 (17) | 0.0297 (14) | 0.0394 (16) | −0.0025 (12) | −0.0043 (13) | 0.0010 (12) |
C7 | 0.0410 (16) | 0.0354 (15) | 0.0355 (15) | 0.0004 (12) | −0.0028 (13) | 0.0057 (12) |
O3 | 0.0666 (15) | 0.0524 (13) | 0.0629 (14) | 0.0191 (11) | −0.0278 (11) | −0.0073 (10) |
O4 | 0.0559 (13) | 0.0718 (14) | 0.0479 (12) | 0.0096 (11) | −0.0243 (10) | −0.0095 (10) |
C1 | 0.0433 (16) | 0.0349 (15) | 0.0360 (15) | −0.0068 (12) | −0.0062 (13) | −0.0050 (12) |
C2 | 0.0478 (17) | 0.0369 (15) | 0.0380 (15) | 0.0007 (13) | −0.0156 (13) | −0.0012 (12) |
C5 | 0.0363 (15) | 0.0355 (14) | 0.0324 (14) | −0.0020 (12) | −0.0049 (12) | 0.0033 (11) |
C14 | 0.0537 (18) | 0.0400 (15) | 0.0409 (16) | 0.0041 (14) | −0.0065 (14) | −0.0002 (13) |
C11 | 0.0410 (16) | 0.0454 (16) | 0.0402 (16) | 0.0069 (13) | −0.0064 (13) | 0.0011 (13) |
C10 | 0.0430 (16) | 0.0439 (16) | 0.0361 (15) | 0.0023 (13) | −0.0068 (13) | −0.0018 (12) |
C12 | 0.0403 (17) | 0.0546 (18) | 0.0376 (16) | −0.0019 (14) | −0.0088 (13) | 0.0007 (13) |
C3 | 0.0464 (17) | 0.0322 (15) | 0.0407 (16) | −0.0013 (12) | −0.0113 (13) | 0.0009 (12) |
C13 | 0.0561 (19) | 0.0460 (17) | 0.0412 (17) | −0.0029 (14) | −0.0088 (15) | −0.0047 (13) |
C16 | 0.069 (2) | 0.071 (2) | 0.0461 (18) | −0.0068 (18) | −0.0232 (17) | −0.0041 (16) |
C15 | 0.091 (3) | 0.051 (2) | 0.083 (3) | 0.0223 (19) | −0.022 (2) | −0.0127 (19) |
C17 | 0.108 (4) | 0.100 (3) | 0.061 (3) | −0.003 (3) | 0.011 (2) | −0.002 (2) |
O6 | 0.077 (2) | 0.151 (3) | 0.088 (2) | 0.007 (2) | −0.0210 (16) | 0.011 (2) |
N2—C8 | 1.274 (3) | O4—C16 | 1.429 (3) |
N2—N1 | 1.370 (3) | C1—C2 | 1.376 (4) |
O5—C7 | 1.228 (3) | C2—C3 | 1.384 (4) |
O1—C3 | 1.364 (3) | C2—H2A | 0.9300 |
O1—H1 | 0.8200 | C14—C13 | 1.381 (4) |
O2—C1 | 1.362 (3) | C14—H14 | 0.9300 |
O2—H2 | 0.8200 | C11—C10 | 1.372 (4) |
N1—C7 | 1.345 (3) | C11—C12 | 1.399 (4) |
N1—H18 | 0.85 (3) | C10—H10 | 0.9300 |
C8—C9 | 1.443 (4) | C12—C13 | 1.371 (4) |
C8—H8 | 0.9300 | C13—H13 | 0.9300 |
C9—C14 | 1.380 (4) | C16—H16A | 0.9600 |
C9—C10 | 1.398 (4) | C16—H16B | 0.9600 |
C4—C3 | 1.385 (4) | C16—H16C | 0.9600 |
C4—C5 | 1.391 (3) | C15—H15A | 0.9600 |
C4—H4 | 0.9300 | C15—H15B | 0.9600 |
C6—C1 | 1.379 (4) | C15—H15C | 0.9600 |
C6—C5 | 1.382 (3) | C17—O6 | 1.366 (4) |
C6—H6A | 0.9300 | C17—H17A | 0.9600 |
C7—C5 | 1.486 (4) | C17—H17B | 0.9600 |
O3—C11 | 1.371 (3) | C17—H17C | 0.9600 |
O3—C15 | 1.414 (4) | O6—H6 | 0.8200 |
O4—C12 | 1.360 (3) | ||
C8—N2—N1 | 116.2 (2) | O3—C11—C10 | 124.3 (2) |
C3—O1—H1 | 109.5 | O3—C11—C12 | 115.0 (2) |
C1—O2—H2 | 109.5 | C10—C11—C12 | 120.7 (2) |
C7—N1—N2 | 120.4 (2) | C11—C10—C9 | 119.9 (2) |
C7—N1—H18 | 125 (2) | C11—C10—H10 | 120.1 |
N2—N1—H18 | 114 (2) | C9—C10—H10 | 120.1 |
N2—C8—C9 | 122.2 (3) | O4—C12—C13 | 125.8 (3) |
N2—C8—H8 | 118.9 | O4—C12—C11 | 115.0 (2) |
C9—C8—H8 | 118.9 | C13—C12—C11 | 119.2 (3) |
C14—C9—C10 | 119.0 (2) | O1—C3—C2 | 116.6 (2) |
C14—C9—C8 | 120.0 (2) | O1—C3—C4 | 122.8 (2) |
C10—C9—C8 | 121.0 (2) | C2—C3—C4 | 120.6 (2) |
C3—C4—C5 | 119.2 (2) | C12—C13—C14 | 120.3 (3) |
C3—C4—H4 | 120.4 | C12—C13—H13 | 119.9 |
C5—C4—H4 | 120.4 | C14—C13—H13 | 119.9 |
C1—C6—C5 | 120.0 (2) | O4—C16—H16A | 109.5 |
C1—C6—H6A | 120.0 | O4—C16—H16B | 109.5 |
C5—C6—H6A | 120.0 | H16A—C16—H16B | 109.5 |
O5—C7—N1 | 121.6 (2) | O4—C16—H16C | 109.5 |
O5—C7—C5 | 122.1 (2) | H16A—C16—H16C | 109.5 |
N1—C7—C5 | 116.3 (2) | H16B—C16—H16C | 109.5 |
C11—O3—C15 | 117.6 (2) | O3—C15—H15A | 109.5 |
C12—O4—C16 | 117.8 (2) | O3—C15—H15B | 109.5 |
O2—C1—C2 | 122.0 (2) | H15A—C15—H15B | 109.5 |
O2—C1—C6 | 117.5 (2) | O3—C15—H15C | 109.5 |
C2—C1—C6 | 120.5 (2) | H15A—C15—H15C | 109.5 |
C1—C2—C3 | 119.6 (2) | H15B—C15—H15C | 109.5 |
C1—C2—H2A | 120.2 | O6—C17—H17A | 109.5 |
C3—C2—H2A | 120.2 | O6—C17—H17B | 109.5 |
C6—C5—C4 | 120.1 (2) | H17A—C17—H17B | 109.5 |
C6—C5—C7 | 117.8 (2) | O6—C17—H17C | 109.5 |
C4—C5—C7 | 122.1 (2) | H17A—C17—H17C | 109.5 |
C9—C14—C13 | 120.9 (3) | H17B—C17—H17C | 109.5 |
C9—C14—H14 | 119.5 | C17—O6—H6 | 109.5 |
C13—C14—H14 | 119.5 | ||
C8—N2—N1—C7 | −177.3 (2) | C15—O3—C11—C10 | 12.5 (4) |
N1—N2—C8—C9 | 178.8 (2) | C15—O3—C11—C12 | −167.1 (3) |
N2—C8—C9—C14 | −178.5 (3) | O3—C11—C10—C9 | −179.4 (3) |
N2—C8—C9—C10 | 1.4 (4) | C12—C11—C10—C9 | 0.2 (4) |
N2—N1—C7—O5 | −4.0 (4) | C14—C9—C10—C11 | 1.0 (4) |
N2—N1—C7—C5 | 174.5 (2) | C8—C9—C10—C11 | −178.9 (3) |
C5—C6—C1—O2 | 179.2 (2) | C16—O4—C12—C13 | −5.1 (4) |
C5—C6—C1—C2 | −1.0 (4) | C16—O4—C12—C11 | 174.2 (3) |
O2—C1—C2—C3 | 179.8 (3) | O3—C11—C12—O4 | −1.0 (4) |
C6—C1—C2—C3 | 0.1 (4) | C10—C11—C12—O4 | 179.4 (3) |
C1—C6—C5—C4 | 0.8 (4) | O3—C11—C12—C13 | 178.3 (3) |
C1—C6—C5—C7 | 178.6 (2) | C10—C11—C12—C13 | −1.3 (4) |
C3—C4—C5—C6 | 0.4 (4) | C1—C2—C3—O1 | −177.1 (3) |
C3—C4—C5—C7 | −177.2 (2) | C1—C2—C3—C4 | 1.2 (4) |
O5—C7—C5—C6 | −16.5 (4) | C5—C4—C3—O1 | 176.7 (3) |
N1—C7—C5—C6 | 164.9 (2) | C5—C4—C3—C2 | −1.4 (4) |
O5—C7—C5—C4 | 161.2 (3) | O4—C12—C13—C14 | −179.6 (3) |
N1—C7—C5—C4 | −17.4 (4) | C11—C12—C13—C14 | 1.2 (4) |
C10—C9—C14—C13 | −1.1 (4) | C9—C14—C13—C12 | 0.1 (4) |
C8—C9—C14—C13 | 178.7 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O6 | 0.82 | 1.92 | 2.728 (3) | 168 |
O1—H1···O5i | 0.82 | 1.93 | 2.742 (3) | 172 |
O6—H6···O4ii | 0.82 | 2.19 | 2.973 (4) | 161 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) x+1, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | C16H16N2O5·CH4O |
Mr | 348.35 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 295 |
a, b, c (Å) | 12.467 (3), 12.201 (3), 11.149 (3) |
β (°) | 91.191 (3) |
V (Å3) | 1695.5 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.22 × 0.18 × 0.15 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8351, 2984, 1794 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.055, 0.162, 1.00 |
No. of reflections | 2984 |
No. of parameters | 236 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.68, −0.32 |
Computer programs: APEX2 (Bruker, 2007), SAINT-Plus (Bruker, 2007), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O6 | 0.82 | 1.92 | 2.728 (3) | 167.8 |
O1—H1···O5i | 0.82 | 1.93 | 2.742 (3) | 172.0 |
O6—H6···O4ii | 0.82 | 2.19 | 2.973 (4) | 160.5 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) x+1, y, z+1. |
Acknowledgements
This project was supported by the Fundamental Research Funds for the Central Universities (project No. CDJRC10220006).
References
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Schiff bases containing the C=N fragments arouses considerable interest due to their antifungal, anticancer and antibacterial activities (Brückner et al., 2000; Harrop et al., 2003; Ren et al., 2002). In continuation of our structural studies of Shiff base compounds (Deng et al., 2009; Huang et al., 2008) we present here the crystal structure of the title compound, (I).
In (I) (Fig. 1), the C7—O5 and C8—N2 bond lengths are 1.228 (3) and 1.274 (3) Å, respecitvely, corresponding to those reported for the related compounds (Deng et al., 2009; Huang et al., 2008). The solvent molecule is linked to the Shiff base molecule via O—H···O hydrogen bond (Table 1).
In the crystal structure, intermolecular O—H···O hydrogen bonds (Table 1) link all moieties into corrugated sheets parallel to (101) plane.