organic compounds
1,1-Dibenzyl-3-(4-fluorobenzoyl)thiourea
aFuel Cell Institute, Universiti Kebangsaan Malaysia, UKM 43600 Bangi Selangor, Malaysia, bDepartment of Chemical and Process Engineering, Faculty of Engineering, Universiti Kebangsaan Malaysia, UKM 43600 Bangi Selangor, Malaysia, and cSchool of Chemical Sciences and Food Technology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, UKM 43600 Bangi Selangor, Malaysia
*Correspondence e-mail: ibnhum@gmail.com
In the title compound, C22H19FN2OS, the 2-fluorobenzoyl group adopts a trans conformation with respect to the thiono S atom across the N—C bond. In the crystal, intermolecular N—H⋯S, C—H⋯S and C—H⋯O hydrogen bonds link the molecules, forming a two-dimensional network parallel to (101).
Related literature
For standard bond lengths, see: Allen et al. (1987). For related structures, see: Nasir et al. (2011); Yamin & Hassan (2004); Hassan et al. (2008a,b,c, 2009). For the synthesis, see: Hassan et al. (2008a).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), XP in SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL and PLATON.
Supporting information
10.1107/S1600536811026687/dn2702sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811026687/dn2702Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811026687/dn2702Isup3.cml
The title compound was synthesized according to a previously reported compound (Hassan et al., 2008a). A colourless crystal, suitable for X-ray crystallography, was obtained by a slow evaporation from ethanolic solution at room temperature (yield 87%).
H atoms of C and N atoms were positioned geometrically and allowed to ride on their parent atoms, with Uiso= 1.2Ueq (C) for aromatic 0.93 Å, Uiso = 1.2Ueq (C) for CH2 0.97 Å, Uiso = 1.2Ueq (N) for N—H 0.86 Å.
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), XP in SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C22H19FN2OS | F(000) = 792 |
Mr = 378.45 | Dx = 1.291 Mg m−3 |
Monoclinic, P21/n | Melting point: 410 K |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 10.683 (3) Å | Cell parameters from 2659 reflections |
b = 7.026 (2) Å | θ = 2.0–25.0° |
c = 26.435 (7) Å | µ = 0.19 mm−1 |
β = 101.100 (6)° | T = 298 K |
V = 1946.9 (10) Å3 | Block, colourless |
Z = 4 | 0.42 × 0.21 × 0.18 mm |
Bruker SMART APEX CCD area-detector diffractometer | 3425 independent reflections |
Radiation source: fine-focus sealed tube | 2659 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
ω scans | θmax = 25.0°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | h = −12→8 |
Tmin = 0.925, Tmax = 0.967 | k = −8→8 |
8644 measured reflections | l = −31→28 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.059 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.138 | H-atom parameters constrained |
S = 1.15 | w = 1/[σ2(Fo2) + (0.0542P)2 + 0.5146P] where P = (Fo2 + 2Fc2)/3 |
3425 reflections | (Δ/σ)max < 0.001 |
244 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C22H19FN2OS | V = 1946.9 (10) Å3 |
Mr = 378.45 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.683 (3) Å | µ = 0.19 mm−1 |
b = 7.026 (2) Å | T = 298 K |
c = 26.435 (7) Å | 0.42 × 0.21 × 0.18 mm |
β = 101.100 (6)° |
Bruker SMART APEX CCD area-detector diffractometer | 3425 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | 2659 reflections with I > 2σ(I) |
Tmin = 0.925, Tmax = 0.967 | Rint = 0.027 |
8644 measured reflections |
R[F2 > 2σ(F2)] = 0.059 | 0 restraints |
wR(F2) = 0.138 | H-atom parameters constrained |
S = 1.15 | Δρmax = 0.25 e Å−3 |
3425 reflections | Δρmin = −0.23 e Å−3 |
244 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F1 | 0.8992 (2) | −0.7024 (3) | 0.17795 (9) | 0.1137 (8) | |
S1 | 0.47635 (8) | 0.26603 (10) | 0.02677 (3) | 0.0641 (3) | |
O1 | 0.5719 (2) | 0.0400 (3) | 0.17142 (7) | 0.0736 (6) | |
N1 | 0.5164 (2) | −0.0377 (3) | 0.08698 (7) | 0.0502 (6) | |
H1 | 0.5210 | −0.1222 | 0.0639 | 0.060* | |
N2 | 0.3452 (2) | 0.1514 (3) | 0.09743 (7) | 0.0453 (5) | |
C1 | 0.6626 (3) | −0.3835 (4) | 0.11002 (10) | 0.0570 (7) | |
H1A | 0.6047 | −0.3773 | 0.0789 | 0.068* | |
C2 | 0.7407 (3) | −0.5402 (5) | 0.12067 (12) | 0.0697 (8) | |
H2 | 0.7369 | −0.6391 | 0.0970 | 0.084* | |
C3 | 0.8236 (3) | −0.5463 (5) | 0.16670 (13) | 0.0742 (9) | |
C4 | 0.8339 (3) | −0.4041 (6) | 0.20216 (12) | 0.0807 (10) | |
H4 | 0.8924 | −0.4120 | 0.2331 | 0.097* | |
C5 | 0.7554 (3) | −0.2481 (5) | 0.19116 (10) | 0.0694 (9) | |
H5 | 0.7605 | −0.1501 | 0.2151 | 0.083* | |
C6 | 0.6688 (2) | −0.2352 (4) | 0.14481 (9) | 0.0495 (6) | |
C7 | 0.5840 (2) | −0.0665 (4) | 0.13658 (9) | 0.0507 (7) | |
C8 | 0.4407 (3) | 0.1238 (3) | 0.07298 (8) | 0.0460 (6) | |
C9 | 0.2742 (3) | 0.3312 (4) | 0.09357 (10) | 0.0532 (7) | |
H9A | 0.1842 | 0.3052 | 0.0815 | 0.064* | |
H9B | 0.3027 | 0.4123 | 0.0683 | 0.064* | |
C10 | 0.2914 (3) | 0.4349 (3) | 0.14432 (9) | 0.0482 (6) | |
C11 | 0.4099 (3) | 0.4550 (4) | 0.17540 (11) | 0.0627 (8) | |
H11 | 0.4801 | 0.3968 | 0.1659 | 0.075* | |
C12 | 0.4261 (4) | 0.5594 (5) | 0.22019 (12) | 0.0768 (10) | |
H12 | 0.5069 | 0.5718 | 0.2406 | 0.092* | |
C13 | 0.3240 (4) | 0.6450 (4) | 0.23477 (12) | 0.0796 (10) | |
H13 | 0.3351 | 0.7164 | 0.2649 | 0.096* | |
C14 | 0.2052 (4) | 0.6251 (4) | 0.20481 (13) | 0.0776 (10) | |
H14 | 0.1352 | 0.6823 | 0.2148 | 0.093* | |
C15 | 0.1887 (3) | 0.5196 (4) | 0.15949 (11) | 0.0625 (8) | |
H15 | 0.1076 | 0.5062 | 0.1393 | 0.075* | |
C16 | 0.2919 (3) | 0.0015 (4) | 0.12613 (9) | 0.0506 (7) | |
H16A | 0.2790 | 0.0517 | 0.1589 | 0.061* | |
H16B | 0.3517 | −0.1036 | 0.1330 | 0.061* | |
C17 | 0.1667 (3) | −0.0689 (4) | 0.09543 (9) | 0.0521 (7) | |
C18 | 0.0539 (3) | −0.0329 (5) | 0.11120 (12) | 0.0716 (9) | |
H18 | 0.0539 | 0.0402 | 0.1405 | 0.086* | |
C19 | −0.0598 (3) | −0.1044 (7) | 0.08383 (17) | 0.0976 (12) | |
H19 | −0.1357 | −0.0802 | 0.0950 | 0.117* | |
C20 | −0.0607 (5) | −0.2105 (7) | 0.04053 (17) | 0.1034 (14) | |
H20 | −0.1371 | −0.2595 | 0.0224 | 0.124* | |
C21 | 0.0496 (5) | −0.2446 (5) | 0.02384 (13) | 0.0921 (12) | |
H21 | 0.0482 | −0.3150 | −0.0060 | 0.111* | |
C22 | 0.1643 (3) | −0.1750 (4) | 0.05112 (11) | 0.0680 (8) | |
H22 | 0.2398 | −0.1996 | 0.0397 | 0.082* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.1048 (16) | 0.1189 (18) | 0.1105 (16) | 0.0546 (14) | 0.0040 (13) | 0.0346 (14) |
S1 | 0.1037 (6) | 0.0484 (4) | 0.0428 (4) | −0.0095 (4) | 0.0210 (4) | 0.0047 (3) |
O1 | 0.0912 (15) | 0.0817 (15) | 0.0405 (10) | 0.0164 (12) | −0.0058 (10) | −0.0154 (10) |
N1 | 0.0710 (14) | 0.0460 (12) | 0.0316 (10) | 0.0060 (11) | 0.0050 (10) | −0.0024 (9) |
N2 | 0.0605 (13) | 0.0358 (11) | 0.0379 (11) | 0.0003 (10) | 0.0055 (10) | 0.0029 (8) |
C1 | 0.0627 (18) | 0.0552 (17) | 0.0482 (15) | 0.0041 (15) | −0.0013 (13) | 0.0088 (13) |
C2 | 0.075 (2) | 0.063 (2) | 0.0670 (19) | 0.0095 (17) | 0.0033 (16) | 0.0058 (15) |
C3 | 0.064 (2) | 0.087 (2) | 0.072 (2) | 0.0230 (18) | 0.0127 (17) | 0.0279 (19) |
C4 | 0.064 (2) | 0.121 (3) | 0.0510 (18) | 0.020 (2) | −0.0025 (15) | 0.020 (2) |
C5 | 0.0630 (18) | 0.099 (3) | 0.0424 (15) | 0.0080 (19) | 0.0008 (14) | 0.0019 (15) |
C6 | 0.0500 (15) | 0.0624 (17) | 0.0360 (13) | −0.0023 (14) | 0.0080 (11) | 0.0092 (12) |
C7 | 0.0567 (16) | 0.0580 (17) | 0.0350 (13) | −0.0042 (14) | 0.0027 (12) | −0.0001 (12) |
C8 | 0.0644 (17) | 0.0389 (14) | 0.0309 (12) | −0.0067 (13) | −0.0007 (12) | −0.0060 (10) |
C9 | 0.0685 (18) | 0.0413 (15) | 0.0468 (14) | 0.0062 (14) | 0.0038 (13) | 0.0037 (11) |
C10 | 0.0657 (17) | 0.0346 (13) | 0.0452 (14) | −0.0024 (13) | 0.0125 (13) | 0.0041 (11) |
C11 | 0.072 (2) | 0.0539 (18) | 0.0614 (17) | −0.0025 (15) | 0.0122 (15) | −0.0097 (14) |
C12 | 0.101 (3) | 0.065 (2) | 0.0594 (19) | −0.012 (2) | 0.0029 (18) | −0.0140 (16) |
C13 | 0.143 (3) | 0.0475 (19) | 0.0521 (18) | −0.005 (2) | 0.029 (2) | −0.0051 (14) |
C14 | 0.118 (3) | 0.0539 (19) | 0.074 (2) | 0.018 (2) | 0.051 (2) | 0.0056 (16) |
C15 | 0.076 (2) | 0.0505 (17) | 0.0659 (18) | 0.0077 (16) | 0.0252 (16) | 0.0086 (14) |
C16 | 0.0652 (17) | 0.0459 (15) | 0.0415 (13) | 0.0018 (13) | 0.0126 (12) | 0.0053 (11) |
C17 | 0.0682 (18) | 0.0428 (15) | 0.0455 (14) | −0.0060 (14) | 0.0114 (13) | 0.0071 (12) |
C18 | 0.074 (2) | 0.078 (2) | 0.0655 (19) | −0.0069 (18) | 0.0196 (17) | 0.0071 (16) |
C19 | 0.067 (2) | 0.127 (4) | 0.098 (3) | −0.021 (2) | 0.014 (2) | 0.022 (3) |
C20 | 0.100 (3) | 0.116 (3) | 0.083 (3) | −0.051 (3) | −0.011 (2) | 0.022 (2) |
C21 | 0.135 (4) | 0.074 (2) | 0.060 (2) | −0.038 (3) | 0.001 (2) | −0.0021 (17) |
C22 | 0.092 (2) | 0.0541 (17) | 0.0564 (17) | −0.0092 (17) | 0.0109 (16) | −0.0003 (14) |
F1—C3 | 1.360 (4) | C10—C11 | 1.376 (4) |
S1—C8 | 1.678 (3) | C11—C12 | 1.375 (4) |
O1—C7 | 1.213 (3) | C11—H11 | 0.9300 |
N1—C7 | 1.385 (3) | C12—C13 | 1.365 (5) |
N1—C8 | 1.401 (3) | C12—H12 | 0.9300 |
N1—H1 | 0.8600 | C13—C14 | 1.367 (5) |
N2—C8 | 1.323 (3) | C13—H13 | 0.9300 |
N2—C9 | 1.467 (3) | C14—C15 | 1.391 (4) |
N2—C16 | 1.475 (3) | C14—H14 | 0.9300 |
C1—C2 | 1.378 (4) | C15—H15 | 0.9300 |
C1—C6 | 1.383 (4) | C16—C17 | 1.508 (4) |
C1—H1A | 0.9300 | C16—H16A | 0.9700 |
C2—C3 | 1.361 (4) | C16—H16B | 0.9700 |
C2—H2 | 0.9300 | C17—C18 | 1.372 (4) |
C3—C4 | 1.360 (5) | C17—C22 | 1.385 (4) |
C4—C5 | 1.376 (4) | C18—C19 | 1.383 (5) |
C4—H4 | 0.9300 | C18—H18 | 0.9300 |
C5—C6 | 1.389 (4) | C19—C20 | 1.364 (6) |
C5—H5 | 0.9300 | C19—H19 | 0.9300 |
C6—C7 | 1.482 (4) | C20—C21 | 1.356 (6) |
C9—C10 | 1.507 (3) | C20—H20 | 0.9300 |
C9—H9A | 0.9700 | C21—C22 | 1.386 (5) |
C9—H9B | 0.9700 | C21—H21 | 0.9300 |
C10—C15 | 1.375 (4) | C22—H22 | 0.9300 |
C7—N1—C8 | 122.6 (2) | C12—C11—C10 | 121.2 (3) |
C7—N1—H1 | 118.7 | C12—C11—H11 | 119.4 |
C8—N1—H1 | 118.7 | C10—C11—H11 | 119.4 |
C8—N2—C9 | 122.0 (2) | C13—C12—C11 | 120.2 (3) |
C8—N2—C16 | 123.8 (2) | C13—C12—H12 | 119.9 |
C9—N2—C16 | 113.9 (2) | C11—C12—H12 | 119.9 |
C2—C1—C6 | 121.1 (3) | C12—C13—C14 | 119.6 (3) |
C2—C1—H1A | 119.4 | C12—C13—H13 | 120.2 |
C6—C1—H1A | 119.4 | C14—C13—H13 | 120.2 |
C3—C2—C1 | 118.2 (3) | C13—C14—C15 | 120.2 (3) |
C3—C2—H2 | 120.9 | C13—C14—H14 | 119.9 |
C1—C2—H2 | 120.9 | C15—C14—H14 | 119.9 |
C4—C3—F1 | 118.4 (3) | C10—C15—C14 | 120.4 (3) |
C4—C3—C2 | 123.0 (3) | C10—C15—H15 | 119.8 |
F1—C3—C2 | 118.5 (3) | C14—C15—H15 | 119.8 |
C3—C4—C5 | 118.3 (3) | N2—C16—C17 | 110.32 (19) |
C3—C4—H4 | 120.8 | N2—C16—H16A | 109.6 |
C5—C4—H4 | 120.8 | C17—C16—H16A | 109.6 |
C4—C5—C6 | 120.9 (3) | N2—C16—H16B | 109.6 |
C4—C5—H5 | 119.5 | C17—C16—H16B | 109.6 |
C6—C5—H5 | 119.5 | H16A—C16—H16B | 108.1 |
C1—C6—C5 | 118.4 (3) | C18—C17—C22 | 118.8 (3) |
C1—C6—C7 | 123.7 (2) | C18—C17—C16 | 121.1 (3) |
C5—C6—C7 | 117.8 (3) | C22—C17—C16 | 120.1 (3) |
O1—C7—N1 | 121.1 (2) | C17—C18—C19 | 120.5 (3) |
O1—C7—C6 | 122.2 (2) | C17—C18—H18 | 119.7 |
N1—C7—C6 | 116.7 (2) | C19—C18—H18 | 119.7 |
N2—C8—N1 | 116.7 (2) | C20—C19—C18 | 120.1 (4) |
N2—C8—S1 | 124.9 (2) | C20—C19—H19 | 120.0 |
N1—C8—S1 | 118.3 (2) | C18—C19—H19 | 120.0 |
N2—C9—C10 | 112.4 (2) | C21—C20—C19 | 120.2 (4) |
N2—C9—H9A | 109.1 | C21—C20—H20 | 119.9 |
C10—C9—H9A | 109.1 | C19—C20—H20 | 119.9 |
N2—C9—H9B | 109.1 | C20—C21—C22 | 120.3 (4) |
C10—C9—H9B | 109.1 | C20—C21—H21 | 119.8 |
H9A—C9—H9B | 107.8 | C22—C21—H21 | 119.8 |
C15—C10—C11 | 118.4 (3) | C17—C22—C21 | 120.0 (3) |
C15—C10—C9 | 120.1 (3) | C17—C22—H22 | 120.0 |
C11—C10—C9 | 121.5 (3) | C21—C22—H22 | 120.0 |
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9B···S1 | 0.97 | 2.55 | 3.076 (3) | 114 |
N1—H1···S1i | 0.86 | 2.61 | 3.422 (2) | 159 |
C1—H1A···S1i | 0.93 | 2.87 | 3.727 (3) | 154 |
C4—H4···O1ii | 0.93 | 2.50 | 3.322 (4) | 147 |
Symmetry codes: (i) −x+1, −y, −z; (ii) −x+3/2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C22H19FN2OS |
Mr | 378.45 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 10.683 (3), 7.026 (2), 26.435 (7) |
β (°) | 101.100 (6) |
V (Å3) | 1946.9 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.19 |
Crystal size (mm) | 0.42 × 0.21 × 0.18 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2000) |
Tmin, Tmax | 0.925, 0.967 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8644, 3425, 2659 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.059, 0.138, 1.15 |
No. of reflections | 3425 |
No. of parameters | 244 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.25, −0.23 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEPIII (Burnett & Johnson, 1996), XP in SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9B···S1 | 0.97 | 2.55 | 3.076 (3) | 114 |
N1—H1···S1i | 0.86 | 2.61 | 3.422 (2) | 159 |
C1—H1A···S1i | 0.93 | 2.87 | 3.727 (3) | 154 |
C4—H4···O1ii | 0.93 | 2.50 | 3.322 (4) | 147 |
Symmetry codes: (i) −x+1, −y, −z; (ii) −x+3/2, y−1/2, −z+1/2. |
Acknowledgements
The authors thank Universiti Kebangsaan Malaysia for providing facilities and grants (postdoctoral for INH, UKM-GUP-BTT-07–30-190 and UKM-OUP-TK-16– 73/2010&2011 for MBK sabbatical leave). They also expresstheir appreciation to the Kementerian Pengajian Tinggi, Malaysia, for the research fund No. UKM-ST-06-FRGS0111–2009.
References
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The title compound, I, is a thiourea derivative of dibenzylamine analogous to our previous reported, 1,1-sibenzyl-3-(3-chlorobenzoyl)thiourea, II (Nasir et al. 2011). The molecule maintains the the same trans and cis conformation for both the 3-fluorobenzoyl and the dibenzylamine groups, respectively, relative to the S atom across the N2—C8 bond (Fig 1). The dihedral angle between the phenyl ring, (C1—C6), and the thiourea fragment, (S1/N1/N2/C8) is 70.95 (13)° , whereas in II was 72.9 (2)°. The bond lengths and angles in the molecules are in normal ranges (Allen et al., 1987) and comparable with those of II. However, the C=S bond length [1.678 (2)Å] is slightly longer than that of (II) [1.672 (6)Å]
Both phenyl rings, [C10/C11/C12/C13/C14/C15] and [C17/C18/C19/C20/C21/C22] are essentially planar and are twisted to each other by a dihedral angle of 22.4 (4)°. The intermolecular N1—H1···S1, C1—H1A···S and C4—H4···O1 hydrogen bonds (Table 1,) links the molecules into two dimensional ribbon parallel to the (1 0 1) plane (Fig 2).