organic compounds
1-(2-Naphthyl)-3-phenyl-3-(4,5,6,7-tetrahydro-1,2,3-benzoselenadiazol-4-yl)propan-1-one
aCentre for Bioinformatics, School of Life Sciences, Pondicherry University, Puducherry 605 014, India, bDepartment of Bioinformatics, Alagappa University, Karaikudi 630 003, India, cDepartment of Industrial Chemistry, Alagappa University, Karaikudi 630 003, India, dDepartment of Chemistry, Pondicherry University, Puducherry 605 014, India, and eDepartment of Organic Chemistry, Madurai Kamaraj University, Madurai 625 021, India
*Correspondence e-mail: jjkanthan@gmail.com
In the title compound, C25H22N2OSe, the fused six-membered cyclohexene ring of the 4,5,6,7-tetrahydro-1,2,3-benzoselenadiazole group adopts a near half-chair conformation and the five-membered 1,2,3-selenadiazole ring is essentially planar (r.m.s. deviation = 0.004 Å). There are weak intermolecular C—H⋯O and C—H⋯π interactions in the Intermolecular π–π stacking is also observed between the naphthyl units, with a centroid–centroid distance of 3.529 (15) Å.
Related literature
For the biological importance of 1,2,3-selenadiazole derivatives, see: Kuroda et al. (2001); El-Bahaie et al. (1990); El-Kashef et al. (1986); Plano et al. (2010). For ring puckering analysis, see: Cremer & Pople (1975). For synthetic procedures, see: Al Arab (1989); Li et al. (2003); Qian et al. (2008); Xu et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
10.1107/S1600536811027103/gk2375sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811027103/gk2375Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811027103/gk2375Isup3.cml
Diastereomerically pure racemic cyclic 1,5-diketones,(2S*,1'R*)-2-[3-(2-naphthyl)-3-oxo-1-phenylpropyl]cyclohexan-1-one, were obtained via a simple Michael addition of cyclohexanone with substituted
by a known method (Al Arab, 1989; Li et al., 2003; Xu et al., 2009; Qian et al., 2008). A mixture of (2S*,1'R*)- 2-[3-(2-naphthyl)-3-oxo-1-phenylpropyl]-1-cyclohexanone (1 mmol, 0.36 g) and semicarbazide hydrochloride (1 mmol, 0.11 g) in ethanol (10 ml) was refluxed for 3 h. After completion of the reaction as monitored by TLC, the mixture was poured into ice-cold water (50 ml) and the resulting mono-semicarbazone solid was filtered off. The mono-semicarbazone (1 mmol, 0.41 g) and SeO2 (2 mmol, 0.44 g) in THF(10 ml) was refluxed on a water bath for 30 minutes and on completion of the reaction the mixture was filtered to remove selenium powder. The filtrate was concentrated under vacuum, and the residue was subjected to using petroleum ether/ethyl acetate mixture (95:5; v/v) as to afford the of the pure product (Yield: 70%, m.p.: 404-405 K). Dissolving the pure compound in 3:1 mixture of dichloromethane/ethyl acetate and on keeping for slow evaporation of the solvents provides crystals for X-ray analysis.The hydrogen atoms were placed in calculated positions (C–H = 0.93–0.98 Å) and included in the
in riding-model approximation with Uiso(H) = 1.2Ueq(C).Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell
CrysAlis PRO (Oxford Diffraction, 2009); data reduction: CrysAlis PRO (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).C25H22N2OSe | Z = 2 |
Mr = 445.41 | F(000) = 456 |
Triclinic, P1 | Dx = 1.450 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.0600 (4) Å | Cell parameters from 3065 reflections |
b = 10.1215 (5) Å | θ = 2.6–29.3° |
c = 13.0827 (6) Å | µ = 1.86 mm−1 |
α = 81.479 (4)° | T = 293 K |
β = 76.478 (4)° | Block, blue |
γ = 82.087 (4)° | 0.4 × 0.3 × 0.2 mm |
V = 1020.33 (9) Å3 |
Oxford Diffraction Xcalibur E diffractometer | 3594 independent reflections |
Radiation source: fine-focus sealed tube | 2770 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
Detector resolution: 15.9821 pixels mm-1 | θmax = 25.0°, θmin = 2.6° |
ω scans | h = −9→9 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −12→12 |
Tmin = 0.658, Tmax = 1.000 | l = −12→15 |
6762 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.050P)2] where P = (Fo2 + 2Fc2)/3 |
3594 reflections | (Δ/σ)max = 0.001 |
262 parameters | Δρmax = 0.29 e Å−3 |
0 restraints | Δρmin = −0.41 e Å−3 |
C25H22N2OSe | γ = 82.087 (4)° |
Mr = 445.41 | V = 1020.33 (9) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.0600 (4) Å | Mo Kα radiation |
b = 10.1215 (5) Å | µ = 1.86 mm−1 |
c = 13.0827 (6) Å | T = 293 K |
α = 81.479 (4)° | 0.4 × 0.3 × 0.2 mm |
β = 76.478 (4)° |
Oxford Diffraction Xcalibur E diffractometer | 3594 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 2770 reflections with I > 2σ(I) |
Tmin = 0.658, Tmax = 1.000 | Rint = 0.025 |
6762 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.29 e Å−3 |
3594 reflections | Δρmin = −0.41 e Å−3 |
262 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Se1 | 0.62678 (4) | 0.82915 (3) | 0.61536 (3) | 0.06072 (16) | |
O1 | 0.3614 (3) | 0.5213 (2) | 0.20388 (17) | 0.0633 (6) | |
N1 | 0.5844 (3) | 0.6746 (2) | 0.48187 (19) | 0.0476 (6) | |
N2 | 0.7071 (3) | 0.7047 (3) | 0.5160 (2) | 0.0587 (7) | |
C1 | 0.4227 (3) | 0.7366 (2) | 0.5202 (2) | 0.0344 (6) | |
C2 | 0.4117 (4) | 0.8232 (3) | 0.5918 (2) | 0.0395 (7) | |
C3 | 0.2505 (4) | 0.8991 (3) | 0.6443 (2) | 0.0485 (7) | |
H3A | 0.2499 | 0.9934 | 0.6163 | 0.058* | |
H3B | 0.2451 | 0.8916 | 0.7197 | 0.058* | |
C4 | 0.0939 (4) | 0.8443 (3) | 0.62557 (19) | 0.0422 (7) | |
H4A | 0.0714 | 0.7629 | 0.6736 | 0.051* | |
H4B | −0.0057 | 0.9098 | 0.6406 | 0.051* | |
C5 | 0.1215 (3) | 0.8137 (3) | 0.5122 (2) | 0.0398 (6) | |
H5A | 0.1464 | 0.8947 | 0.4642 | 0.048* | |
H5B | 0.0169 | 0.7858 | 0.5016 | 0.048* | |
C6 | 0.2686 (3) | 0.7034 (3) | 0.48589 (19) | 0.0339 (6) | |
H6 | 0.2328 | 0.6210 | 0.5303 | 0.041* | |
C7 | 0.3076 (3) | 0.6729 (2) | 0.36983 (19) | 0.0331 (6) | |
H7 | 0.4113 | 0.6089 | 0.3604 | 0.040* | |
C8 | 0.3471 (3) | 0.7946 (3) | 0.28883 (18) | 0.0334 (6) | |
C9 | 0.5157 (4) | 0.8233 (3) | 0.2486 (2) | 0.0480 (7) | |
H9 | 0.6049 | 0.7671 | 0.2711 | 0.058* | |
C10 | 0.5519 (5) | 0.9349 (3) | 0.1752 (2) | 0.0606 (9) | |
H10 | 0.6651 | 0.9530 | 0.1493 | 0.073* | |
C11 | 0.4227 (5) | 1.0187 (3) | 0.1405 (2) | 0.0601 (9) | |
H11 | 0.4479 | 1.0933 | 0.0912 | 0.072* | |
C12 | 0.2555 (5) | 0.9919 (3) | 0.1790 (2) | 0.0533 (8) | |
H12 | 0.1669 | 1.0484 | 0.1560 | 0.064* | |
C13 | 0.2194 (4) | 0.8812 (3) | 0.2518 (2) | 0.0415 (7) | |
H13 | 0.1057 | 0.8639 | 0.2770 | 0.050* | |
C14 | 0.1634 (3) | 0.6015 (3) | 0.3511 (2) | 0.0376 (6) | |
H14A | 0.1320 | 0.5334 | 0.4105 | 0.045* | |
H14B | 0.0635 | 0.6662 | 0.3483 | 0.045* | |
C15 | 0.2124 (4) | 0.5363 (3) | 0.2507 (2) | 0.0375 (6) | |
C16 | 0.0773 (3) | 0.4844 (2) | 0.2104 (2) | 0.0334 (6) | |
C17 | 0.1294 (3) | 0.4041 (2) | 0.13129 (19) | 0.0358 (6) | |
H17 | 0.2463 | 0.3836 | 0.1048 | 0.043* | |
C18 | 0.0114 (3) | 0.3514 (2) | 0.08876 (19) | 0.0340 (6) | |
C19 | −0.1658 (3) | 0.3833 (3) | 0.12857 (19) | 0.0352 (6) | |
C20 | −0.2175 (3) | 0.4677 (3) | 0.2103 (2) | 0.0410 (7) | |
H20 | −0.3339 | 0.4906 | 0.2366 | 0.049* | |
C21 | −0.1000 (3) | 0.5157 (3) | 0.2508 (2) | 0.0367 (6) | |
H21 | −0.1367 | 0.5694 | 0.3055 | 0.044* | |
C22 | −0.2856 (4) | 0.3321 (3) | 0.0848 (2) | 0.0485 (8) | |
H22 | −0.4026 | 0.3538 | 0.1098 | 0.058* | |
C23 | −0.2302 (4) | 0.2516 (3) | 0.0068 (2) | 0.0550 (9) | |
H23 | −0.3095 | 0.2182 | −0.0214 | 0.066* | |
C24 | −0.0545 (4) | 0.2186 (3) | −0.0316 (2) | 0.0532 (8) | |
H24 | −0.0184 | 0.1623 | −0.0845 | 0.064* | |
C25 | 0.0639 (4) | 0.2670 (3) | 0.0068 (2) | 0.0441 (7) | |
H25 | 0.1802 | 0.2450 | −0.0205 | 0.053* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Se1 | 0.0506 (2) | 0.0778 (3) | 0.0659 (2) | −0.01457 (18) | −0.02624 (18) | −0.01871 (18) |
O1 | 0.0281 (12) | 0.0930 (17) | 0.0786 (15) | −0.0050 (11) | −0.0061 (11) | −0.0520 (13) |
N1 | 0.0352 (14) | 0.0520 (15) | 0.0575 (15) | 0.0042 (12) | −0.0141 (12) | −0.0141 (12) |
N2 | 0.0365 (15) | 0.0715 (18) | 0.0714 (18) | 0.0003 (13) | −0.0198 (14) | −0.0115 (14) |
C1 | 0.0340 (16) | 0.0341 (14) | 0.0349 (14) | −0.0014 (12) | −0.0092 (12) | −0.0025 (12) |
C2 | 0.0424 (17) | 0.0410 (15) | 0.0380 (15) | −0.0054 (13) | −0.0138 (13) | −0.0049 (12) |
C3 | 0.056 (2) | 0.0458 (17) | 0.0457 (17) | −0.0006 (15) | −0.0107 (15) | −0.0160 (14) |
C4 | 0.0400 (17) | 0.0445 (16) | 0.0394 (16) | 0.0021 (14) | −0.0051 (14) | −0.0081 (13) |
C5 | 0.0312 (15) | 0.0499 (16) | 0.0382 (15) | 0.0044 (13) | −0.0075 (13) | −0.0130 (13) |
C6 | 0.0320 (15) | 0.0353 (14) | 0.0352 (14) | −0.0048 (12) | −0.0076 (12) | −0.0053 (11) |
C7 | 0.0261 (14) | 0.0340 (14) | 0.0404 (15) | 0.0014 (11) | −0.0080 (12) | −0.0119 (12) |
C8 | 0.0378 (16) | 0.0356 (14) | 0.0307 (13) | −0.0041 (12) | −0.0073 (12) | −0.0163 (11) |
C9 | 0.0389 (17) | 0.0519 (18) | 0.0536 (18) | −0.0098 (14) | −0.0043 (15) | −0.0126 (15) |
C10 | 0.061 (2) | 0.065 (2) | 0.0523 (19) | −0.028 (2) | 0.0107 (18) | −0.0137 (17) |
C11 | 0.088 (3) | 0.051 (2) | 0.0368 (17) | −0.017 (2) | 0.0017 (19) | −0.0073 (15) |
C12 | 0.078 (2) | 0.0471 (18) | 0.0356 (16) | −0.0009 (17) | −0.0170 (17) | −0.0052 (14) |
C13 | 0.0439 (17) | 0.0452 (16) | 0.0364 (15) | −0.0020 (14) | −0.0086 (13) | −0.0110 (13) |
C14 | 0.0313 (15) | 0.0372 (15) | 0.0463 (16) | −0.0039 (12) | −0.0066 (13) | −0.0138 (12) |
C15 | 0.0301 (16) | 0.0372 (15) | 0.0474 (16) | −0.0004 (12) | −0.0108 (14) | −0.0114 (12) |
C16 | 0.0299 (15) | 0.0296 (13) | 0.0413 (15) | −0.0013 (11) | −0.0090 (12) | −0.0064 (12) |
C17 | 0.0289 (14) | 0.0379 (15) | 0.0413 (15) | 0.0016 (12) | −0.0093 (12) | −0.0089 (12) |
C18 | 0.0374 (16) | 0.0317 (14) | 0.0331 (14) | −0.0025 (12) | −0.0103 (12) | −0.0010 (11) |
C19 | 0.0359 (16) | 0.0373 (14) | 0.0337 (14) | −0.0076 (12) | −0.0097 (12) | −0.0018 (12) |
C20 | 0.0276 (15) | 0.0471 (16) | 0.0471 (16) | −0.0019 (13) | −0.0038 (13) | −0.0106 (13) |
C21 | 0.0330 (15) | 0.0361 (14) | 0.0428 (15) | −0.0019 (12) | −0.0068 (13) | −0.0141 (12) |
C22 | 0.0384 (17) | 0.066 (2) | 0.0453 (17) | −0.0154 (15) | −0.0092 (14) | −0.0096 (15) |
C23 | 0.057 (2) | 0.071 (2) | 0.0461 (17) | −0.0244 (18) | −0.0162 (16) | −0.0134 (16) |
C24 | 0.065 (2) | 0.061 (2) | 0.0414 (16) | −0.0106 (17) | −0.0159 (16) | −0.0187 (15) |
C25 | 0.0448 (18) | 0.0493 (17) | 0.0398 (16) | −0.0006 (14) | −0.0099 (14) | −0.0135 (13) |
Se1—C2 | 1.840 (3) | C20—C21 | 1.362 (3) |
Se1—N2 | 1.888 (3) | C20—C19 | 1.417 (4) |
O1—C15 | 1.214 (3) | C20—H20 | 0.9300 |
C1—C2 | 1.355 (4) | C5—H5A | 0.9700 |
C1—N1 | 1.381 (3) | C5—H5B | 0.9700 |
C1—C6 | 1.509 (3) | C13—C12 | 1.375 (4) |
N1—N2 | 1.264 (3) | C13—H13 | 0.9300 |
C14—C15 | 1.503 (3) | C21—H21 | 0.9300 |
C14—C7 | 1.533 (3) | C18—C25 | 1.421 (4) |
C14—H14A | 0.9700 | C18—C19 | 1.411 (4) |
C14—H14B | 0.9700 | C25—C24 | 1.353 (4) |
C15—C16 | 1.499 (3) | C25—H25 | 0.9300 |
C17—C16 | 1.365 (3) | C9—C10 | 1.385 (4) |
C17—C18 | 1.404 (3) | C9—H9 | 0.9300 |
C17—H17 | 0.9300 | C19—C22 | 1.419 (3) |
C7—C8 | 1.518 (3) | C22—C23 | 1.356 (4) |
C7—C6 | 1.546 (3) | C22—H22 | 0.9300 |
C7—H7 | 0.9800 | C10—C11 | 1.369 (5) |
C6—C5 | 1.526 (4) | C10—H10 | 0.9300 |
C6—H6 | 0.9800 | C12—C11 | 1.373 (5) |
C8—C13 | 1.386 (4) | C12—H12 | 0.9300 |
C8—C9 | 1.392 (4) | C3—H3A | 0.9700 |
C16—C21 | 1.412 (4) | C3—H3B | 0.9700 |
C2—C3 | 1.488 (4) | C23—C24 | 1.398 (5) |
C4—C5 | 1.520 (3) | C23—H23 | 0.9300 |
C4—C3 | 1.529 (3) | C24—H24 | 0.9300 |
C4—H4A | 0.9700 | C11—H11 | 0.9300 |
C4—H4B | 0.9700 | ||
C2—Se1—N2 | 86.70 (11) | C4—C5—C6 | 112.0 (2) |
C2—C1—N1 | 116.2 (2) | C4—C5—H5A | 109.2 |
C2—C1—C6 | 123.1 (2) | C6—C5—H5A | 109.2 |
N1—C1—C6 | 120.6 (2) | C4—C5—H5B | 109.2 |
N2—N1—C1 | 117.3 (2) | C6—C5—H5B | 109.2 |
C15—C14—C7 | 113.2 (2) | H5A—C5—H5B | 107.9 |
C15—C14—H14A | 108.9 | C12—C13—C8 | 122.1 (3) |
C7—C14—H14A | 108.9 | C12—C13—H13 | 119.0 |
C15—C14—H14B | 108.9 | C8—C13—H13 | 119.0 |
C7—C14—H14B | 108.9 | C20—C21—C16 | 120.3 (2) |
H14A—C14—H14B | 107.8 | C20—C21—H21 | 119.8 |
O1—C15—C16 | 119.7 (2) | C16—C21—H21 | 119.8 |
O1—C15—C14 | 120.5 (2) | C17—C18—C25 | 122.4 (2) |
C16—C15—C14 | 119.8 (2) | C17—C18—C19 | 119.0 (2) |
C16—C17—C18 | 121.8 (2) | C25—C18—C19 | 118.6 (2) |
C16—C17—H17 | 119.1 | C24—C25—C18 | 120.3 (3) |
C18—C17—H17 | 119.1 | C24—C25—H25 | 119.9 |
C8—C7—C14 | 112.5 (2) | C18—C25—H25 | 119.9 |
C8—C7—C6 | 113.86 (19) | C10—C9—C8 | 120.6 (3) |
C14—C7—C6 | 110.17 (19) | C10—C9—H9 | 119.7 |
C8—C7—H7 | 106.6 | C8—C9—H9 | 119.7 |
C14—C7—H7 | 106.6 | C22—C19—C20 | 122.3 (3) |
C6—C7—H7 | 106.6 | C22—C19—C18 | 119.3 (2) |
N1—N2—Se1 | 110.7 (2) | C20—C19—C18 | 118.4 (2) |
C1—C6—C5 | 108.8 (2) | C23—C22—C19 | 120.3 (3) |
C1—C6—C7 | 113.7 (2) | C23—C22—H22 | 119.9 |
C5—C6—C7 | 114.0 (2) | C19—C22—H22 | 119.9 |
C1—C6—H6 | 106.6 | C11—C10—C9 | 120.7 (3) |
C5—C6—H6 | 106.6 | C11—C10—H10 | 119.6 |
C7—C6—H6 | 106.6 | C9—C10—H10 | 119.7 |
C13—C8—C9 | 117.2 (3) | C11—C12—C13 | 119.8 (3) |
C13—C8—C7 | 122.2 (2) | C11—C12—H12 | 120.1 |
C9—C8—C7 | 120.6 (3) | C13—C12—H12 | 120.1 |
C17—C16—C21 | 119.2 (2) | C2—C3—C4 | 110.6 (2) |
C17—C16—C15 | 118.1 (2) | C2—C3—H3A | 109.5 |
C21—C16—C15 | 122.7 (2) | C4—C3—H3A | 109.5 |
C1—C2—C3 | 125.2 (2) | C2—C3—H3B | 109.5 |
C1—C2—Se1 | 109.2 (2) | C4—C3—H3B | 109.5 |
C3—C2—Se1 | 125.65 (19) | H3A—C3—H3B | 108.1 |
C5—C4—C3 | 111.4 (2) | C22—C23—C24 | 120.4 (3) |
C5—C4—H4A | 109.3 | C22—C23—H23 | 119.8 |
C3—C4—H4A | 109.3 | C24—C23—H23 | 119.8 |
C5—C4—H4B | 109.3 | C25—C24—C23 | 121.2 (3) |
C3—C4—H4B | 109.3 | C25—C24—H24 | 119.4 |
H4A—C4—H4B | 108.0 | C23—C24—H24 | 119.4 |
C21—C20—C19 | 121.2 (3) | C10—C11—C12 | 119.6 (3) |
C21—C20—H20 | 119.4 | C10—C11—H11 | 120.2 |
C19—C20—H20 | 119.4 | C12—C11—H11 | 120.2 |
C2—C1—N1—N2 | −0.6 (4) | C3—C4—C5—C6 | 63.3 (3) |
C6—C1—N1—N2 | −178.3 (2) | C1—C6—C5—C4 | −49.3 (3) |
C7—C14—C15—O1 | 13.6 (4) | C7—C6—C5—C4 | −177.3 (2) |
C7—C14—C15—C16 | −168.8 (2) | C9—C8—C13—C12 | −0.5 (4) |
C15—C14—C7—C8 | 67.1 (3) | C7—C8—C13—C12 | 179.5 (2) |
C15—C14—C7—C6 | −164.7 (2) | C19—C20—C21—C16 | 1.3 (4) |
C1—N1—N2—Se1 | 0.9 (3) | C17—C16—C21—C20 | −0.9 (4) |
C2—Se1—N2—N1 | −0.8 (2) | C15—C16—C21—C20 | 179.0 (2) |
C2—C1—C6—C5 | 19.6 (3) | C16—C17—C18—C25 | −179.6 (2) |
N1—C1—C6—C5 | −162.9 (2) | C16—C17—C18—C19 | 0.4 (4) |
C2—C1—C6—C7 | 147.8 (2) | C17—C18—C25—C24 | 179.9 (3) |
N1—C1—C6—C7 | −34.7 (3) | C19—C18—C25—C24 | −0.1 (4) |
C8—C7—C6—C1 | −69.0 (3) | C13—C8—C9—C10 | 0.5 (4) |
C14—C7—C6—C1 | 163.5 (2) | C7—C8—C9—C10 | −179.5 (2) |
C8—C7—C6—C5 | 56.5 (3) | C21—C20—C19—C22 | −179.9 (2) |
C14—C7—C6—C5 | −71.0 (3) | C21—C20—C19—C18 | −0.9 (4) |
C14—C7—C8—C13 | 39.2 (3) | C17—C18—C19—C22 | 179.1 (2) |
C6—C7—C8—C13 | −87.1 (3) | C25—C18—C19—C22 | −0.9 (4) |
C14—C7—C8—C9 | −140.8 (2) | C17—C18—C19—C20 | 0.0 (3) |
C6—C7—C8—C9 | 92.9 (3) | C25—C18—C19—C20 | −179.9 (2) |
C18—C17—C16—C21 | 0.0 (4) | C20—C19—C22—C23 | −179.9 (3) |
C18—C17—C16—C15 | −179.9 (2) | C18—C19—C22—C23 | 1.0 (4) |
O1—C15—C16—C17 | 9.8 (4) | C8—C9—C10—C11 | −0.3 (4) |
C14—C15—C16—C17 | −167.9 (2) | C8—C13—C12—C11 | 0.3 (4) |
O1—C15—C16—C21 | −170.1 (3) | C1—C2—C3—C4 | 12.4 (4) |
C14—C15—C16—C21 | 12.3 (4) | Se1—C2—C3—C4 | −166.41 (18) |
N1—C1—C2—C3 | −179.1 (2) | C5—C4—C3—C2 | −41.7 (3) |
C6—C1—C2—C3 | −1.5 (4) | C19—C22—C23—C24 | −0.2 (4) |
N1—C1—C2—Se1 | −0.1 (3) | C18—C25—C24—C23 | 1.0 (4) |
C6—C1—C2—Se1 | 177.50 (18) | C22—C23—C24—C25 | −0.8 (5) |
N2—Se1—C2—C1 | 0.47 (19) | C9—C10—C11—C12 | 0.1 (5) |
N2—Se1—C2—C3 | 179.4 (2) | C13—C12—C11—C10 | −0.1 (4) |
Cg is the centroid of the C16–C21 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C20—H20···O1i | 0.93 | 2.56 | 3.381 (3) | 147 |
C22—H22···O1i | 0.93 | 2.58 | 3.392 (4) | 146 |
C4—H4A···Cgii | 0.97 | 2.63 | 3.584 (3) | 167 |
Symmetry codes: (i) x−1, y, z; (ii) −x, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C25H22N2OSe |
Mr | 445.41 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 8.0600 (4), 10.1215 (5), 13.0827 (6) |
α, β, γ (°) | 81.479 (4), 76.478 (4), 82.087 (4) |
V (Å3) | 1020.33 (9) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.86 |
Crystal size (mm) | 0.4 × 0.3 × 0.2 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur E diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.658, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6762, 3594, 2770 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.096, 1.01 |
No. of reflections | 3594 |
No. of parameters | 262 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.41 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009), PLATON (Spek, 2009).
Cg is the centroid of the C16–C21 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C20—H20···O1i | 0.93 | 2.56 | 3.381 (3) | 147 |
C22—H22···O1i | 0.93 | 2.58 | 3.392 (4) | 146 |
C4—H4A···Cgii | 0.97 | 2.63 | 3.584 (3) | 167 |
Symmetry codes: (i) x−1, y, z; (ii) −x, −y+1, −z+1. |
Footnotes
‡Additional correspondence author, e-mail: krishstrucbio@gmail.com.
Acknowledgements
RK thanks the Centre for Bioinformatics [funded by the Department of Biotechnology (DBT) and the Department of Information Technology (DIT)], Pondicherry University, for providing computational facilities to carry out this research work. JJ thanks Dr Binoy Krishna Saha, Assistant Professor, Department of Chemistry, Pondicherry University, for providing the X-ray facilities. JM thanks the Council for Scientific and Industrial Research (CSIR) for Senior Research Fellowship (SRF).
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Selenium containing heterocyclic compounds are of interest due to their biological applications. They posses various beneficial activities such as anti-fungal (Kuroda et al., 2001), anti-bacterial (El-Kashef et al., 1986), anti-microbial (El-Bahaie et al., 1990), and anti-cancer (Plano et al., 2010). Considering the importances of 1,2,3-selenadiazole derivatives, we report the structure of the title compound (Fig. 1). The five-membered 1,2,3-selenadiazole moiety (C1/N1/N2/Se1/C2) of the title compound adopts a planar conformation (r.m.s. deviation = 0.004 Å). Cremer & Pople puckering analysis (Cremer & Pople, 1975) cannot be performed to this moiety, for its weighted average absolute torsion angle is 0.62°, which is less than 5.0°. However, the fused six-membered ring (C1/C2/C3/C4/C5/C6) of 4,5,6,7-tetrahydrobenzo[d][1,2,3]selenadiazole group adopts a near to half-chair conformation with puckering parameters of Q = 0.489 (3) Å, θ = 48.9 (4)° and Φ = 218.1 (5)°. The stabilization of crystal packing is mainly governed by intermolecular hydrogen bonding interactions such as C20–H20···O1 (x - 1, y, z) and C22—H22···O1 (Fig. 2). The C—H···π interaction (Fig. 3) is observed between C4—H4A···Cg (–x,1 - y,1 - z) [Cg is the centroid of C16—C21 ring, C···Cg distance: 3.584 (3) Å, H···Cg 2.63 Å, H-Perp: 2.61 Å], which also contribute to the crystal packing. The crystal packing also exhibits intermolecular π–π stacking interaction between naphthyl units with a centroid-centroid distance of 3.529 (15) Å.