organic compounds
(5E)-5-(4-Methoxybenzylidene)-2-(piperidin-1-yl)-1,3-thiazol-4(5H)-one
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Chemistry, Mangalore University, Karnataka, India
*Correspondence e-mail: hkfun@usm.my
In the title compound, C16H18N2O2S, the piperidine ring adopts a chair conformation. The central 4-thiazolidinone ring makes dihedral angles of 12.01 (7) and 51.42 (9)°, respectively, with the benzene ring and the least-squares plane of the piperidine ring. An intramolecular C—H⋯S hydrogen bond stabilizes the molecular structure and generates an S(6) ring motif. In the crystal, molecules are linked into a tape along the c axis by intermolecular C—H⋯O hydrogen bonds.
Related literature
For general background to the title compound, see: Lesyk & Zimenkovsky (2004); Lesyk et al. (2007); Havrylyuk et al. (2009); Ahn et al. (2006); Park et al. (2008); Geronikaki et al. (2008); Zimenkovsky et al. (2005). For hydrogen-bond motifs, see: Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811025761/is2743sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811025761/is2743Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811025761/is2743Isup3.cml
An equimolar mixture of 2-(piperidin-1-yl)-1,3-thiazol-4(5H)-one, anisaldehyde and sodium acetate in acetic acid was refluxed for 2 hrs. The product formed was filtered, washed, dried and re-crystallized from ethanol.
All hydrogen atoms were positioned geometrically (C—H = 0.93–0.97 Å) and refined using a riding model, with Uiso(H) = 1.2 or 1.5Ueq(C). A rotating-group model were applied for methyl group.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C16H18N2O2S | F(000) = 640 |
Mr = 302.38 | Dx = 1.331 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 6389 reflections |
a = 8.5811 (3) Å | θ = 2.8–32.3° |
b = 16.5165 (6) Å | µ = 0.22 mm−1 |
c = 12.4930 (4) Å | T = 297 K |
β = 121.518 (2)° | Block, brown |
V = 1509.42 (9) Å3 | 0.61 × 0.26 × 0.23 mm |
Z = 4 |
Bruker APEXII DUO CCD area-detector diffractometer | 5432 independent reflections |
Radiation source: fine-focus sealed tube | 4148 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
ϕ and ω scans | θmax = 32.6°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −12→12 |
Tmin = 0.877, Tmax = 0.950 | k = −25→25 |
20021 measured reflections | l = −17→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.119 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0606P)2 + 0.2092P] where P = (Fo2 + 2Fc2)/3 |
5432 reflections | (Δ/σ)max = 0.001 |
191 parameters | Δρmax = 0.31 e Å−3 |
0 restraints | Δρmin = −0.17 e Å−3 |
C16H18N2O2S | V = 1509.42 (9) Å3 |
Mr = 302.38 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.5811 (3) Å | µ = 0.22 mm−1 |
b = 16.5165 (6) Å | T = 297 K |
c = 12.4930 (4) Å | 0.61 × 0.26 × 0.23 mm |
β = 121.518 (2)° |
Bruker APEXII DUO CCD area-detector diffractometer | 5432 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 4148 reflections with I > 2σ(I) |
Tmin = 0.877, Tmax = 0.950 | Rint = 0.023 |
20021 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.119 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.31 e Å−3 |
5432 reflections | Δρmin = −0.17 e Å−3 |
191 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.20003 (4) | 0.555618 (16) | 0.50684 (2) | 0.03982 (9) | |
O1 | 0.39228 (18) | 0.38959 (6) | 0.75694 (9) | 0.0638 (3) | |
O2 | 0.27412 (16) | 0.35919 (6) | 0.04461 (9) | 0.0561 (2) | |
N1 | 0.28424 (15) | 0.51913 (6) | 0.73753 (9) | 0.0425 (2) | |
N2 | 0.16266 (16) | 0.64775 (6) | 0.66938 (10) | 0.0455 (2) | |
C1 | 0.32029 (16) | 0.31624 (6) | 0.34274 (10) | 0.0382 (2) | |
H1A | 0.3436 | 0.2711 | 0.3935 | 0.046* | |
C2 | 0.30857 (17) | 0.30703 (7) | 0.22911 (11) | 0.0418 (2) | |
H2A | 0.3216 | 0.2560 | 0.2034 | 0.050* | |
C3 | 0.27723 (16) | 0.37401 (7) | 0.15287 (11) | 0.0409 (2) | |
C4 | 0.2523 (2) | 0.44940 (7) | 0.19023 (12) | 0.0479 (3) | |
H4A | 0.2292 | 0.4944 | 0.1392 | 0.057* | |
C5 | 0.2618 (2) | 0.45754 (6) | 0.30353 (12) | 0.0457 (3) | |
H5A | 0.2434 | 0.5084 | 0.3271 | 0.055* | |
C6 | 0.29786 (15) | 0.39221 (6) | 0.38362 (10) | 0.0349 (2) | |
C7 | 0.31827 (16) | 0.39806 (6) | 0.50618 (10) | 0.0374 (2) | |
H7A | 0.3601 | 0.3509 | 0.5536 | 0.045* | |
C8 | 0.28758 (16) | 0.45928 (6) | 0.56330 (10) | 0.0366 (2) | |
C9 | 0.32720 (18) | 0.45128 (7) | 0.69525 (11) | 0.0422 (2) | |
C10 | 0.21678 (16) | 0.57634 (6) | 0.65225 (10) | 0.0375 (2) | |
C11 | 0.1834 (2) | 0.66894 (8) | 0.79030 (12) | 0.0500 (3) | |
H11A | 0.2454 | 0.6255 | 0.8501 | 0.060* | |
H11B | 0.0640 | 0.6764 | 0.7798 | 0.060* | |
C12 | 0.2935 (2) | 0.74644 (8) | 0.83907 (13) | 0.0562 (3) | |
H12A | 0.2980 | 0.7631 | 0.9151 | 0.067* | |
H12B | 0.4178 | 0.7364 | 0.8601 | 0.067* | |
C13 | 0.2120 (2) | 0.81400 (9) | 0.74341 (16) | 0.0675 (4) | |
H13A | 0.2908 | 0.8611 | 0.7753 | 0.081* | |
H13B | 0.0938 | 0.8289 | 0.7301 | 0.081* | |
C14 | 0.1894 (2) | 0.78837 (8) | 0.61928 (15) | 0.0576 (3) | |
H14A | 0.1271 | 0.8307 | 0.5574 | 0.069* | |
H14B | 0.3088 | 0.7804 | 0.6300 | 0.069* | |
C15 | 0.08081 (19) | 0.71084 (7) | 0.57317 (12) | 0.0489 (3) | |
H15A | −0.0437 | 0.7208 | 0.5517 | 0.059* | |
H15B | 0.0770 | 0.6927 | 0.4980 | 0.059* | |
C16 | 0.2685 (3) | 0.42727 (11) | −0.02815 (15) | 0.0677 (4) | |
H16A | 0.2886 | 0.4093 | −0.0931 | 0.102* | |
H16B | 0.3621 | 0.4652 | 0.0252 | 0.102* | |
H16C | 0.1511 | 0.4530 | −0.0654 | 0.102* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.05518 (18) | 0.03126 (13) | 0.03620 (14) | 0.00014 (10) | 0.02609 (12) | −0.00056 (9) |
O1 | 0.1086 (9) | 0.0433 (5) | 0.0527 (5) | 0.0192 (5) | 0.0513 (6) | 0.0128 (4) |
O2 | 0.0807 (7) | 0.0558 (5) | 0.0460 (5) | 0.0013 (5) | 0.0430 (5) | −0.0033 (4) |
N1 | 0.0585 (6) | 0.0364 (4) | 0.0369 (4) | −0.0010 (4) | 0.0280 (4) | −0.0027 (3) |
N2 | 0.0620 (6) | 0.0336 (4) | 0.0418 (5) | 0.0007 (4) | 0.0276 (5) | −0.0061 (4) |
C1 | 0.0459 (6) | 0.0306 (4) | 0.0402 (5) | 0.0027 (4) | 0.0241 (5) | 0.0004 (4) |
C2 | 0.0517 (6) | 0.0348 (5) | 0.0436 (5) | 0.0021 (4) | 0.0282 (5) | −0.0047 (4) |
C3 | 0.0470 (6) | 0.0423 (5) | 0.0392 (5) | −0.0020 (4) | 0.0267 (5) | −0.0038 (4) |
C4 | 0.0711 (8) | 0.0361 (5) | 0.0474 (6) | 0.0014 (5) | 0.0386 (6) | 0.0040 (4) |
C5 | 0.0724 (8) | 0.0282 (4) | 0.0497 (6) | 0.0004 (5) | 0.0411 (6) | −0.0009 (4) |
C6 | 0.0410 (5) | 0.0307 (4) | 0.0364 (5) | −0.0024 (4) | 0.0226 (4) | −0.0028 (3) |
C7 | 0.0474 (6) | 0.0308 (4) | 0.0376 (5) | −0.0014 (4) | 0.0248 (4) | −0.0004 (4) |
C8 | 0.0461 (5) | 0.0312 (4) | 0.0357 (5) | −0.0037 (4) | 0.0235 (4) | −0.0020 (4) |
C9 | 0.0594 (7) | 0.0352 (5) | 0.0380 (5) | 0.0000 (4) | 0.0297 (5) | 0.0006 (4) |
C10 | 0.0447 (5) | 0.0320 (4) | 0.0364 (5) | −0.0058 (4) | 0.0217 (4) | −0.0065 (4) |
C11 | 0.0590 (7) | 0.0486 (6) | 0.0479 (6) | −0.0020 (5) | 0.0319 (6) | −0.0128 (5) |
C12 | 0.0565 (7) | 0.0517 (7) | 0.0551 (7) | −0.0024 (6) | 0.0254 (6) | −0.0216 (6) |
C13 | 0.0740 (10) | 0.0401 (6) | 0.0770 (10) | 0.0010 (6) | 0.0316 (8) | −0.0188 (6) |
C14 | 0.0613 (8) | 0.0362 (5) | 0.0704 (9) | −0.0002 (5) | 0.0311 (7) | −0.0004 (6) |
C15 | 0.0561 (7) | 0.0361 (5) | 0.0490 (6) | 0.0042 (5) | 0.0236 (6) | −0.0020 (5) |
C16 | 0.0943 (12) | 0.0728 (10) | 0.0530 (8) | −0.0026 (9) | 0.0503 (8) | 0.0041 (7) |
S1—C8 | 1.7435 (11) | C7—C8 | 1.3407 (15) |
S1—C10 | 1.7790 (11) | C7—H7A | 0.9300 |
O1—C9 | 1.2225 (14) | C8—C9 | 1.5047 (15) |
O2—C3 | 1.3609 (14) | C11—C12 | 1.5166 (19) |
O2—C16 | 1.4309 (19) | C11—H11A | 0.9700 |
N1—C10 | 1.3108 (14) | C11—H11B | 0.9700 |
N1—C9 | 1.3691 (15) | C12—C13 | 1.513 (2) |
N2—C10 | 1.3252 (14) | C12—H12A | 0.9700 |
N2—C15 | 1.4634 (16) | C12—H12B | 0.9700 |
N2—C11 | 1.4680 (16) | C13—C14 | 1.519 (2) |
C1—C2 | 1.3781 (16) | C13—H13A | 0.9700 |
C1—C6 | 1.4053 (14) | C13—H13B | 0.9700 |
C1—H1A | 0.9300 | C14—C15 | 1.5096 (18) |
C2—C3 | 1.3912 (16) | C14—H14A | 0.9700 |
C2—H2A | 0.9300 | C14—H14B | 0.9700 |
C3—C4 | 1.3852 (16) | C15—H15A | 0.9700 |
C4—C5 | 1.3811 (17) | C15—H15B | 0.9700 |
C4—H4A | 0.9300 | C16—H16A | 0.9600 |
C5—C6 | 1.3919 (15) | C16—H16B | 0.9600 |
C5—H5A | 0.9300 | C16—H16C | 0.9600 |
C6—C7 | 1.4506 (15) | ||
C8—S1—C10 | 88.56 (5) | N2—C11—C12 | 109.25 (12) |
C3—O2—C16 | 117.82 (11) | N2—C11—H11A | 109.8 |
C10—N1—C9 | 111.72 (9) | C12—C11—H11A | 109.8 |
C10—N2—C15 | 124.01 (10) | N2—C11—H11B | 109.8 |
C10—N2—C11 | 120.94 (10) | C12—C11—H11B | 109.8 |
C15—N2—C11 | 115.05 (10) | H11A—C11—H11B | 108.3 |
C2—C1—C6 | 121.52 (10) | C13—C12—C11 | 111.81 (12) |
C2—C1—H1A | 119.2 | C13—C12—H12A | 109.3 |
C6—C1—H1A | 119.2 | C11—C12—H12A | 109.3 |
C1—C2—C3 | 120.09 (10) | C13—C12—H12B | 109.3 |
C1—C2—H2A | 120.0 | C11—C12—H12B | 109.3 |
C3—C2—H2A | 120.0 | H12A—C12—H12B | 107.9 |
O2—C3—C4 | 124.79 (11) | C12—C13—C14 | 111.12 (11) |
O2—C3—C2 | 115.70 (10) | C12—C13—H13A | 109.4 |
C4—C3—C2 | 119.52 (10) | C14—C13—H13A | 109.4 |
C5—C4—C3 | 119.75 (11) | C12—C13—H13B | 109.4 |
C5—C4—H4A | 120.1 | C14—C13—H13B | 109.4 |
C3—C4—H4A | 120.1 | H13A—C13—H13B | 108.0 |
C4—C5—C6 | 122.21 (10) | C15—C14—C13 | 110.46 (13) |
C4—C5—H5A | 118.9 | C15—C14—H14A | 109.6 |
C6—C5—H5A | 118.9 | C13—C14—H14A | 109.6 |
C5—C6—C1 | 116.88 (10) | C15—C14—H14B | 109.6 |
C5—C6—C7 | 124.46 (9) | C13—C14—H14B | 109.6 |
C1—C6—C7 | 118.64 (9) | H14A—C14—H14B | 108.1 |
C8—C7—C6 | 131.54 (10) | N2—C15—C14 | 110.80 (11) |
C8—C7—H7A | 114.2 | N2—C15—H15A | 109.5 |
C6—C7—H7A | 114.2 | C14—C15—H15A | 109.5 |
C7—C8—C9 | 121.47 (10) | N2—C15—H15B | 109.5 |
C7—C8—S1 | 129.49 (9) | C14—C15—H15B | 109.5 |
C9—C8—S1 | 109.03 (7) | H15A—C15—H15B | 108.1 |
O1—C9—N1 | 124.43 (11) | O2—C16—H16A | 109.5 |
O1—C9—C8 | 122.07 (10) | O2—C16—H16B | 109.5 |
N1—C9—C8 | 113.49 (9) | H16A—C16—H16B | 109.5 |
N1—C10—N2 | 123.60 (10) | O2—C16—H16C | 109.5 |
N1—C10—S1 | 117.18 (8) | H16A—C16—H16C | 109.5 |
N2—C10—S1 | 119.22 (9) | H16B—C16—H16C | 109.5 |
C6—C1—C2—C3 | 1.20 (18) | C7—C8—C9—O1 | 1.5 (2) |
C16—O2—C3—C4 | 8.6 (2) | S1—C8—C9—O1 | −178.96 (12) |
C16—O2—C3—C2 | −171.27 (13) | C7—C8—C9—N1 | −178.78 (11) |
C1—C2—C3—O2 | 177.84 (11) | S1—C8—C9—N1 | 0.74 (13) |
C1—C2—C3—C4 | −2.01 (19) | C9—N1—C10—N2 | 179.29 (12) |
O2—C3—C4—C5 | −178.76 (13) | C9—N1—C10—S1 | −1.17 (14) |
C2—C3—C4—C5 | 1.1 (2) | C15—N2—C10—N1 | −177.59 (12) |
C3—C4—C5—C6 | 0.7 (2) | C11—N2—C10—N1 | 2.90 (19) |
C4—C5—C6—C1 | −1.5 (2) | C15—N2—C10—S1 | 2.88 (17) |
C4—C5—C6—C7 | 176.81 (12) | C11—N2—C10—S1 | −176.63 (9) |
C2—C1—C6—C5 | 0.53 (17) | C8—S1—C10—N1 | 1.37 (10) |
C2—C1—C6—C7 | −177.87 (11) | C8—S1—C10—N2 | −179.07 (10) |
C5—C6—C7—C8 | 9.2 (2) | C10—N2—C11—C12 | 123.69 (13) |
C1—C6—C7—C8 | −172.51 (12) | C15—N2—C11—C12 | −55.87 (15) |
C6—C7—C8—C9 | −177.40 (11) | N2—C11—C12—C13 | 53.89 (16) |
C6—C7—C8—S1 | 3.2 (2) | C11—C12—C13—C14 | −54.80 (18) |
C10—S1—C8—C7 | 178.38 (12) | C12—C13—C14—C15 | 54.15 (17) |
C10—S1—C8—C9 | −1.08 (9) | C10—N2—C15—C14 | −122.75 (14) |
C10—N1—C9—O1 | 179.94 (14) | C11—N2—C15—C14 | 56.79 (16) |
C10—N1—C9—C8 | 0.25 (15) | C13—C14—C15—N2 | −54.03 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2A···O1i | 0.93 | 2.48 | 3.3048 (16) | 147 |
C5—H5A···S1 | 0.93 | 2.58 | 3.2809 (15) | 132 |
C16—H16A···O1ii | 0.96 | 2.48 | 3.421 (3) | 167 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | C16H18N2O2S |
Mr | 302.38 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 297 |
a, b, c (Å) | 8.5811 (3), 16.5165 (6), 12.4930 (4) |
β (°) | 121.518 (2) |
V (Å3) | 1509.42 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.22 |
Crystal size (mm) | 0.61 × 0.26 × 0.23 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.877, 0.950 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20021, 5432, 4148 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.758 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.119, 1.02 |
No. of reflections | 5432 |
No. of parameters | 191 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.31, −0.17 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2A···O1i | 0.93 | 2.48 | 3.3048 (16) | 147 |
C5—H5A···S1 | 0.93 | 2.58 | 3.2809 (15) | 132 |
C16—H16A···O1ii | 0.96 | 2.48 | 3.421 (3) | 167 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, y, z−1. |
Acknowledgements
HKF and CSY thank Universiti Sains Malaysia for the Research University Grant 1001/PFIZIK/811160.
References
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4-Thiazolidinone ring system is a core structure in various synthetic compounds which display a broad spectrum of biological activities (Lesyk & Zimenkovsky, 2004) including an anticancer effect (Lesyk et al., 2007; Havrylyuk et al., 2009). Mechanisms of 4-thiazolidinones and related heterocycles antitumor activity may be associated with the affinity to anticancer bio-targets, such as phosphatase of a regenerating liver (PRL-3) (Ahn et al., 2006; Park et al., 2008) and non-membrane protein tyrosine phosphatase (SHP-2) (Geronikaki et al., 2008). 5-Arylidene derivatives were previously shown as the most active group of compounds with the anticancer activity among a large pool of 4-azolidone derivatives and analogs (Zimenkovsky et al., 2005). This prompted us to synthesize title compound (I).
The central 4-thiazolidinone ring makes dihedral angles of 12.01 (7) and 51.42 (9)°, respectively, with the benzene ring and the least-squares plane of piperidine ring. The piperidine ring adopts a chair conformation. An intramolecular C5—H5A···S1 hydrogen bond (Table 1) stabilizes the molecular structure and generates an S(6) ring motif (Fig. 1; Bernstein et al., 1995). In the crystal structure, the molecules are linked into a tape along the c axis by intermolecular C16—H16A···O1 and C2—H2A···O1 hydrogen bonds (Table 1 and Fig. 2).