organic compounds
2-[(E)-(2,4,6-Trichlorophenyl)iminomethyl]phenol
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Chemistry, Mangalore University, Karnataka, India
*Correspondence e-mail: hkfun@usm.my
The title molecule, C13H8Cl3NO, exists in a trans configuration with respect to the C=N bond [1.278 (2) Å]. The benzene rings form a dihedral angle of 24.64 (11)°. The molecular structure is stabilized by an intramolecular O—H⋯N hydrogen bond, which generates an S(6) ring motif. In the crystal, π–π stacking interactions [centroid–centroid distances = 3.6893 (14) Å] are observed.
Related literature
For general background to and the pharmacological activity of Schiff base compounds, see: Shapiro (1998); Villar et al. (2004); Venugopal & Jayashree (2008); Pandey et al. (2003); Bhat et al. (2005); Wadher et al. (2009). For related structures, see: Fun et al. (2011a,b). For hydrogen-bond motifs, see: Bernstein et al. (1995). For standard bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811026122/lh5276sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811026122/lh5276Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811026122/lh5276Isup3.cml
A mixture of salicylaldehyde (0.01 mol) and 2,4,6-trichloroaniline (0.01 mol) was dissolved in a minimum amount of ethanol, followed by addition of 2 mL glacial acetic acid. The mixture was refluxed gently for 4-5 h. The reaction was monitored by TLC. After completion of the reaction, the mixture was poured into a beaker containing crushed ice. The precipitate obtained was filtered, dried and recrystallized from ethanol. Yield: 68%, m.p. 425-426 K.
H1O1 atom was located in a difference Fourier map and refined freely [O1–H1O1 = 0.79 (3) Å]. The remaining H atoms were positioned geometrically and refined using a riding model with C–H = 0.93 Å and Uiso(H) = 1.2 Ueq(C). The highest residual electron density peak and the deepest hole are located at 0.93 and 0.85 Å from Cl3, respectively.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound showing 30% probability displacement ellipsoids for non-H atoms. An intramolecular hydrogen bond is shown as a dashed line. |
C13H8Cl3NO | F(000) = 608 |
Mr = 300.55 | Dx = 1.556 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3223 reflections |
a = 12.8847 (16) Å | θ = 2.9–30.0° |
b = 6.9505 (9) Å | µ = 0.70 mm−1 |
c = 14.4265 (18) Å | T = 296 K |
β = 96.612 (2)° | Block, yellow |
V = 1283.4 (3) Å3 | 0.36 × 0.19 × 0.14 mm |
Z = 4 |
Bruker SMART APEXII DUO CCD area-detector diffractometer | 3782 independent reflections |
Radiation source: fine-focus sealed tube | 2586 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
ϕ and ω scans | θmax = 30.2°, θmin = 3.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −18→18 |
Tmin = 0.785, Tmax = 0.908 | k = −9→9 |
10136 measured reflections | l = −20→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0489P)2 + 0.6136P] where P = (Fo2 + 2Fc2)/3 |
3782 reflections | (Δ/σ)max < 0.001 |
167 parameters | Δρmax = 0.45 e Å−3 |
0 restraints | Δρmin = −0.44 e Å−3 |
C13H8Cl3NO | V = 1283.4 (3) Å3 |
Mr = 300.55 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.8847 (16) Å | µ = 0.70 mm−1 |
b = 6.9505 (9) Å | T = 296 K |
c = 14.4265 (18) Å | 0.36 × 0.19 × 0.14 mm |
β = 96.612 (2)° |
Bruker SMART APEXII DUO CCD area-detector diffractometer | 3782 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2586 reflections with I > 2σ(I) |
Tmin = 0.785, Tmax = 0.908 | Rint = 0.027 |
10136 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.45 e Å−3 |
3782 reflections | Δρmin = −0.44 e Å−3 |
167 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.05175 (4) | 0.34050 (9) | 0.92951 (3) | 0.05264 (16) | |
Cl2 | 0.44455 (4) | 0.27949 (11) | 0.84597 (5) | 0.0669 (2) | |
Cl3 | 0.35845 (4) | 0.16620 (13) | 0.63858 (4) | 0.0723 (2) | |
O1 | −0.20343 (13) | 0.2343 (3) | 0.77771 (11) | 0.0562 (4) | |
N1 | −0.01212 (11) | 0.2621 (2) | 0.73161 (11) | 0.0370 (3) | |
C1 | 0.13702 (14) | 0.3001 (3) | 0.84736 (13) | 0.0368 (4) | |
C2 | 0.24358 (14) | 0.3061 (3) | 0.87539 (14) | 0.0427 (4) | |
H2A | 0.2685 | 0.3344 | 0.9369 | 0.051* | |
C3 | 0.31237 (14) | 0.2693 (3) | 0.81056 (15) | 0.0428 (4) | |
C4 | 0.27450 (14) | 0.2244 (3) | 0.71929 (14) | 0.0427 (4) | |
C5 | 0.16785 (14) | 0.2223 (3) | 0.69162 (13) | 0.0408 (4) | |
H5A | 0.1432 | 0.1931 | 0.6301 | 0.049* | |
C6 | 0.09726 (13) | 0.2636 (3) | 0.75513 (12) | 0.0346 (4) | |
C7 | −0.05235 (13) | 0.3079 (3) | 0.64944 (13) | 0.0372 (4) | |
H7A | −0.0084 | 0.3437 | 0.6056 | 0.045* | |
C8 | −0.16440 (14) | 0.3060 (3) | 0.62241 (14) | 0.0387 (4) | |
C9 | −0.20251 (16) | 0.3408 (4) | 0.52901 (15) | 0.0514 (5) | |
H9A | −0.1558 | 0.3640 | 0.4857 | 0.062* | |
C10 | −0.30845 (17) | 0.3411 (4) | 0.50043 (18) | 0.0628 (7) | |
H10A | −0.3333 | 0.3623 | 0.4382 | 0.075* | |
C11 | −0.37712 (17) | 0.3093 (4) | 0.56579 (19) | 0.0638 (7) | |
H11A | −0.4486 | 0.3109 | 0.5471 | 0.077* | |
C12 | −0.34176 (16) | 0.2754 (4) | 0.65778 (19) | 0.0561 (6) | |
H12A | −0.3893 | 0.2549 | 0.7006 | 0.067* | |
C13 | −0.23490 (15) | 0.2716 (3) | 0.68736 (15) | 0.0430 (4) | |
H1O1 | −0.142 (2) | 0.238 (5) | 0.787 (2) | 0.077 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0521 (3) | 0.0677 (4) | 0.0399 (2) | 0.0004 (3) | 0.0130 (2) | −0.0002 (2) |
Cl2 | 0.0322 (2) | 0.0865 (5) | 0.0786 (4) | −0.0046 (3) | −0.0083 (2) | 0.0036 (3) |
Cl3 | 0.0415 (3) | 0.1152 (6) | 0.0624 (4) | 0.0192 (3) | 0.0154 (2) | −0.0023 (4) |
O1 | 0.0452 (8) | 0.0715 (12) | 0.0537 (9) | 0.0035 (8) | 0.0128 (7) | 0.0064 (8) |
N1 | 0.0303 (7) | 0.0408 (9) | 0.0400 (8) | 0.0040 (6) | 0.0037 (6) | −0.0019 (7) |
C1 | 0.0366 (8) | 0.0376 (10) | 0.0365 (8) | −0.0005 (8) | 0.0054 (7) | 0.0016 (8) |
C2 | 0.0388 (9) | 0.0464 (12) | 0.0407 (9) | −0.0037 (8) | −0.0044 (7) | 0.0007 (8) |
C3 | 0.0300 (8) | 0.0448 (11) | 0.0518 (11) | −0.0015 (8) | −0.0036 (7) | 0.0060 (9) |
C4 | 0.0319 (8) | 0.0509 (12) | 0.0459 (10) | 0.0077 (8) | 0.0070 (7) | 0.0037 (9) |
C5 | 0.0337 (8) | 0.0502 (12) | 0.0379 (9) | 0.0065 (8) | 0.0012 (7) | −0.0009 (8) |
C6 | 0.0291 (7) | 0.0349 (9) | 0.0396 (9) | 0.0009 (7) | 0.0032 (6) | 0.0000 (7) |
C7 | 0.0309 (8) | 0.0399 (10) | 0.0411 (9) | 0.0031 (7) | 0.0049 (7) | −0.0029 (8) |
C8 | 0.0305 (8) | 0.0391 (10) | 0.0460 (9) | 0.0031 (7) | 0.0020 (7) | −0.0049 (8) |
C9 | 0.0404 (10) | 0.0649 (15) | 0.0473 (10) | 0.0039 (10) | −0.0016 (8) | −0.0046 (10) |
C10 | 0.0443 (11) | 0.0808 (19) | 0.0592 (13) | 0.0061 (11) | −0.0114 (10) | −0.0079 (13) |
C11 | 0.0352 (10) | 0.0735 (18) | 0.0790 (17) | 0.0022 (11) | −0.0098 (10) | −0.0134 (14) |
C12 | 0.0346 (9) | 0.0597 (15) | 0.0752 (15) | −0.0016 (10) | 0.0109 (10) | −0.0075 (12) |
C13 | 0.0360 (9) | 0.0391 (11) | 0.0544 (11) | 0.0025 (8) | 0.0072 (8) | −0.0047 (9) |
Cl1—C1 | 1.7292 (19) | C5—H5A | 0.9300 |
Cl2—C3 | 1.7222 (18) | C7—C8 | 1.452 (2) |
Cl3—C4 | 1.726 (2) | C7—H7A | 0.9300 |
O1—C13 | 1.345 (3) | C8—C13 | 1.399 (3) |
O1—H1O1 | 0.79 (3) | C8—C9 | 1.401 (3) |
N1—C7 | 1.278 (2) | C9—C10 | 1.380 (3) |
N1—C6 | 1.411 (2) | C9—H9A | 0.9300 |
C1—C2 | 1.387 (2) | C10—C11 | 1.383 (4) |
C1—C6 | 1.393 (2) | C10—H10A | 0.9300 |
C2—C3 | 1.384 (3) | C11—C12 | 1.373 (4) |
C2—H2A | 0.9300 | C11—H11A | 0.9300 |
C3—C4 | 1.386 (3) | C12—C13 | 1.394 (3) |
C4—C5 | 1.386 (2) | C12—H12A | 0.9300 |
C5—C6 | 1.393 (2) | ||
C13—O1—H1O1 | 110 (2) | N1—C7—H7A | 119.0 |
C7—N1—C6 | 120.55 (16) | C8—C7—H7A | 119.0 |
C2—C1—C6 | 121.80 (17) | C13—C8—C9 | 119.42 (18) |
C2—C1—Cl1 | 118.76 (14) | C13—C8—C7 | 121.61 (18) |
C6—C1—Cl1 | 119.44 (13) | C9—C8—C7 | 118.97 (18) |
C3—C2—C1 | 119.14 (17) | C10—C9—C8 | 120.8 (2) |
C3—C2—H2A | 120.4 | C10—C9—H9A | 119.6 |
C1—C2—H2A | 120.4 | C8—C9—H9A | 119.6 |
C2—C3—C4 | 120.04 (17) | C9—C10—C11 | 119.0 (2) |
C2—C3—Cl2 | 118.70 (15) | C9—C10—H10A | 120.5 |
C4—C3—Cl2 | 121.26 (16) | C11—C10—H10A | 120.5 |
C3—C4—C5 | 120.32 (18) | C12—C11—C10 | 121.3 (2) |
C3—C4—Cl3 | 120.94 (15) | C12—C11—H11A | 119.4 |
C5—C4—Cl3 | 118.73 (15) | C10—C11—H11A | 119.4 |
C4—C5—C6 | 120.60 (17) | C11—C12—C13 | 120.4 (2) |
C4—C5—H5A | 119.7 | C11—C12—H12A | 119.8 |
C6—C5—H5A | 119.7 | C13—C12—H12A | 119.8 |
C1—C6—C5 | 118.01 (16) | O1—C13—C12 | 118.5 (2) |
C1—C6—N1 | 118.57 (16) | O1—C13—C8 | 122.39 (18) |
C5—C6—N1 | 123.37 (16) | C12—C13—C8 | 119.1 (2) |
N1—C7—C8 | 122.10 (17) | ||
C6—C1—C2—C3 | −1.9 (3) | C7—N1—C6—C1 | 151.17 (19) |
Cl1—C1—C2—C3 | 178.45 (16) | C7—N1—C6—C5 | −31.6 (3) |
C1—C2—C3—C4 | −0.9 (3) | C6—N1—C7—C8 | 179.28 (17) |
C1—C2—C3—Cl2 | 179.37 (16) | N1—C7—C8—C13 | 6.2 (3) |
C2—C3—C4—C5 | 2.1 (3) | N1—C7—C8—C9 | −174.2 (2) |
Cl2—C3—C4—C5 | −178.18 (17) | C13—C8—C9—C10 | −0.2 (4) |
C2—C3—C4—Cl3 | −176.72 (17) | C7—C8—C9—C10 | −179.7 (2) |
Cl2—C3—C4—Cl3 | 3.0 (3) | C8—C9—C10—C11 | 1.0 (4) |
C3—C4—C5—C6 | −0.5 (3) | C9—C10—C11—C12 | −0.8 (4) |
Cl3—C4—C5—C6 | 178.34 (16) | C10—C11—C12—C13 | −0.3 (4) |
C2—C1—C6—C5 | 3.4 (3) | C11—C12—C13—O1 | −178.8 (2) |
Cl1—C1—C6—C5 | −176.92 (15) | C11—C12—C13—C8 | 1.1 (4) |
C2—C1—C6—N1 | −179.22 (18) | C9—C8—C13—O1 | 179.0 (2) |
Cl1—C1—C6—N1 | 0.5 (3) | C7—C8—C13—O1 | −1.5 (3) |
C4—C5—C6—C1 | −2.2 (3) | C9—C8—C13—C12 | −0.9 (3) |
C4—C5—C6—N1 | −179.41 (19) | C7—C8—C13—C12 | 178.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···N1 | 0.79 (3) | 1.94 (3) | 2.633 (2) | 146 (3) |
Experimental details
Crystal data | |
Chemical formula | C13H8Cl3NO |
Mr | 300.55 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 12.8847 (16), 6.9505 (9), 14.4265 (18) |
β (°) | 96.612 (2) |
V (Å3) | 1283.4 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.70 |
Crystal size (mm) | 0.36 × 0.19 × 0.14 |
Data collection | |
Diffractometer | Bruker SMART APEXII DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.785, 0.908 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10136, 3782, 2586 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.708 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.124, 1.02 |
No. of reflections | 3782 |
No. of parameters | 167 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.45, −0.44 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SAINT (Bruker, 2009, SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···N1 | 0.79 (3) | 1.94 (3) | 2.633 (2) | 146 (3) |
Acknowledgements
HKF and CKQ thank Universiti Sains Malaysia for the Research University Grant (No. 1001/PFIZIK/811160).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Schiff bases are the important compound owing to their wide range of biological activities and industrial application. The synthesis and structural research of Schiff bases are derived from aldehydes and amines bearing various alkyl and aryl N-substituents. Schiff base ligands may contain a variety of substituents with different electron-donating or electron-withdrawing groups and therefore may have interesting chemical properties. They have attracted particular interest due to their biological activities (Shapiro, 1998). They have been found to posses the pharmacological activities such as antimalarial, anticancer (Villar et al., 2004) antibacterial (Venugopal & Jayashree, 2008) antifungal (Pandey et al., 2003) antitubercular (Bhat et al., 2005), anti-inflammatory and antimicrobial (Wadher et al., 2009) properties.
In the title molecule (Fig. 1), the benzene rings (C1-C6 and C8-C13) form a dihedral angle of 24.64 (11)°. The title molecule exists in trans configuration with respect to the C7═N1 bond [C7═N1 = 1.278 (2) Å]. Bond lengths (Allen et al., 1987) and angles are within normal ranges and are comparable to related structures (Fun et al., 2011a,b). The molecular structure is stabilized by an intramolecular O1–H1O1···N1 hydrogen bond (Table 1) which generates a S(6) ring motif (Fig. 1, Bernstein et al., 1995).
In the crystal packing, π-π stacking interactions between the centroid of C1-C6 (Cg1) and C8-C13 (Cg2) benzene rings, with Cg1···Cg2i distance of 3.6893 (14) Å [symmetry code: (i) -x, -1/2+y, 3/2-z] are observed. No significant intermolecular hydrogen bonds are observed.