organic compounds
4-(1H-Benzimidazol-2-ylmethoxy)-3-methoxybenzaldehyde tetrahydrate
aDepartment of Chemistry, Keene State College, 229 Main Street, Keene, NH 03435-2001, USA, bDepartment of Studies in Chemistry, Mangalore University, Mangalagangotri 574 199, India, and cDepartment of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570 006, India
*Correspondence e-mail: jjasinski@keene.edu
In the title compound, C16H14N2O3·4H2O, the dihedral angle between the mean planes of the benzimidazole ring system and benzene ring is 2.9 (1)°. The aldehyde group is disordered over two sets of sites with refined occupancies of 0.559 (4) and 0.441 (4). In the crystal, extensive intermolecular O—H⋯O, O—H⋯N and N—H⋯O hydrogen bonds in concert with weak π–π stacking interactions [centroid–centroid distances = 3.6104 (9), 3.6288 (9) and 3.9167 (10) Å] create a three-dimensional network.
Related literature
For the pharmaceutical and biological activity of benzimidazole compounds, see: Pujar et al. (1988); Bouwman et al. (1990). For plant-protective agents in the field of pest control, see: Madkour et al. (2006). For related structures, see: Akkurt et al. (2011); Jian et al. (2003); Jasinski et al. (2010, 2011); Odabaşoğlu et al. (2007). For standard bond lengths, see: Allen et al. (1987).
Experimental
Crystal data
|
Refinement
|
Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811027164/lh5279sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811027164/lh5279Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811027164/lh5279Isup3.cml
Vanillin (1.52g, 0.01 mole) was dissolved in 30 mL of ethanolic KOH (0.56g, 0.01 mole) and the solution was stirred for 1 h. 2-chloromethyl-1H-benzimidazole (1.66g, 0.01 mole) was added with continuous stirring and refluxed for 5 h (Fig. 3). The reaction mixture was cooled to room temperature and poured into crushed ice. The solid products that separated out were filtered off and recrystallized in ethanol. Single crystals were grown from ethanol by the slow evaporation method which yielded the tetrahydrate of the product (m.p.: 381-382 K) with an yield of 46%.
The N–H atom was located in a difference Fourier map and refined isotropically with DFIX = 0.86Å. The O–H atoms were also located in differnce Fourier maps and refined isotropically with DFIX = 0.84Å and DANG = 1.35Å. DFIX and DANG commands are in the SHELXL (Sheldrick, 2008) software. The C and O atoms on the aldehyde group were refined as disordered over two sets of sites for C16/C16A and O3/O3A [occupancy ratio 0.441 (4):0.559 (4)]. All of the remaining H atoms were placed in calculated positions and refined using a riding-model approximation with C—H lengths of 0.95Å (CH), 0.99Å (CH2) or 0.98Å (CH3). The isotropic displacement parameters for these atoms were set to 1.19-1.21 (CH, CH2 ) or 1.50 (CH3) times Ueq of the parent atom.
Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell
CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis RED (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound showing 50% probability displacement ellipsoids. | |
Fig. 2. Packing diagram of the title compound viewed along the a axis. Dashed lines represent O—H···O, O—H···N and N—H···O hydrogen bonds. | |
Fig. 3. Reaction scheme of the title compound, (I). |
C16H14N2O3·4H2O | Z = 2 |
Mr = 354.36 | F(000) = 376 |
Triclinic, P1 | Dx = 1.340 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.8953 (6) Å | Cell parameters from 4026 reflections |
b = 11.4266 (13) Å | θ = 3.4–32.3° |
c = 11.7287 (14) Å | µ = 0.11 mm−1 |
α = 107.965 (10)° | T = 173 K |
β = 90.906 (8)° | Block, pale yellow |
γ = 91.769 (8)° | 0.35 × 0.33 × 0.20 mm |
V = 878.32 (16) Å3 |
Oxford Diffraction Xcalibur Eos Gemini diffractometer | 4539 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 3499 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.016 |
Detector resolution: 16.1500 pixels mm-1 | θmax = 28.7°, θmin = 3.4° |
ω scans | h = −9→6 |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)' | k = −15→12 |
Tmin = 0.964, Tmax = 0.979 | l = −14→15 |
8245 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.152 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0835P)2 + 0.139P] where P = (Fo2 + 2Fc2)/3 |
4539 reflections | (Δ/σ)max = 0.002 |
273 parameters | Δρmax = 0.25 e Å−3 |
17 restraints | Δρmin = −0.36 e Å−3 |
C16H14N2O3·4H2O | γ = 91.769 (8)° |
Mr = 354.36 | V = 878.32 (16) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.8953 (6) Å | Mo Kα radiation |
b = 11.4266 (13) Å | µ = 0.11 mm−1 |
c = 11.7287 (14) Å | T = 173 K |
α = 107.965 (10)° | 0.35 × 0.33 × 0.20 mm |
β = 90.906 (8)° |
Oxford Diffraction Xcalibur Eos Gemini diffractometer | 4539 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)' | 3499 reflections with I > 2σ(I) |
Tmin = 0.964, Tmax = 0.979 | Rint = 0.016 |
8245 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 17 restraints |
wR(F2) = 0.152 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.25 e Å−3 |
4539 reflections | Δρmin = −0.36 e Å−3 |
273 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.25247 (16) | 0.50917 (9) | 0.48675 (9) | 0.0433 (3) | |
O2 | 0.27855 (17) | 0.27445 (9) | 0.41320 (10) | 0.0504 (3) | |
O3 | 0.3970 (4) | 0.1784 (3) | −0.0482 (2) | 0.0613 (10) | 0.441 (4) |
O3A | 0.3989 (4) | 0.3155 (2) | −0.0763 (2) | 0.0688 (9) | 0.559 (4) |
O4 | 0.1293 (2) | 0.86262 (11) | 0.38472 (13) | 0.0662 (4) | |
H4WB | 0.161 (3) | 0.8992 (19) | 0.4568 (14) | 0.079* | |
H4WA | 0.045 (3) | 0.9090 (19) | 0.3647 (19) | 0.079* | |
O5 | 0.18563 (19) | 0.98294 (11) | 0.63137 (12) | 0.0599 (3) | |
H5WB | 0.192 (3) | 0.9297 (16) | 0.6684 (18) | 0.072* | |
H5WA | 0.286 (3) | 1.0304 (17) | 0.6559 (18) | 0.072* | |
O6 | 0.1819 (3) | 0.33687 (14) | 0.6899 (2) | 0.0961 (6) | |
H6WA | 0.101 (3) | 0.276 (2) | 0.674 (2) | 0.115* | |
H6WB | 0.246 (4) | 0.326 (3) | 0.626 (2) | 0.115* | |
O7 | 0.4891 (2) | 0.15864 (14) | −0.29388 (13) | 0.0701 (4) | |
H7WB | 0.603 (3) | 0.158 (2) | −0.3182 (19) | 0.084* | |
H7WA | 0.493 (3) | 0.192 (2) | −0.2216 (14) | 0.084* | |
N1 | 0.18875 (16) | 0.59173 (10) | 0.72323 (11) | 0.0364 (3) | |
H1N | 0.192 (2) | 0.5154 (12) | 0.6960 (14) | 0.044* | |
N2 | 0.19911 (17) | 0.78893 (10) | 0.72974 (10) | 0.0386 (3) | |
C1 | 0.16508 (18) | 0.65805 (12) | 0.84166 (12) | 0.0363 (3) | |
C2 | 0.1383 (2) | 0.62248 (15) | 0.94340 (14) | 0.0462 (3) | |
H2A | 0.1349 | 0.5383 | 0.9401 | 0.055* | |
C3 | 0.1168 (2) | 0.71524 (17) | 1.04909 (15) | 0.0549 (4) | |
H3A | 0.0961 | 0.6948 | 1.1207 | 0.066* | |
C4 | 0.1248 (3) | 0.83881 (17) | 1.05371 (15) | 0.0588 (4) | |
H4A | 0.1095 | 0.9004 | 1.1285 | 0.071* | |
C5 | 0.1541 (2) | 0.87414 (14) | 0.95290 (14) | 0.0508 (4) | |
H5A | 0.1614 | 0.9586 | 0.9573 | 0.061* | |
C6 | 0.17285 (18) | 0.78171 (12) | 0.84452 (12) | 0.0375 (3) | |
C7 | 0.20690 (18) | 0.67405 (11) | 0.66209 (12) | 0.0348 (3) | |
C8 | 0.2316 (2) | 0.63843 (12) | 0.53048 (12) | 0.0407 (3) | |
H8A | 0.1171 | 0.6617 | 0.4915 | 0.049* | |
H8B | 0.3480 | 0.6816 | 0.5122 | 0.049* | |
C9 | 0.28517 (18) | 0.46020 (12) | 0.36761 (12) | 0.0352 (3) | |
C10 | 0.3059 (2) | 0.52749 (13) | 0.28790 (13) | 0.0413 (3) | |
H10A | 0.2975 | 0.6145 | 0.3152 | 0.050* | |
C11 | 0.3390 (2) | 0.46721 (14) | 0.16864 (13) | 0.0443 (3) | |
H11A | 0.3551 | 0.5132 | 0.1141 | 0.053* | |
C12 | 0.34859 (19) | 0.34084 (14) | 0.12823 (13) | 0.0418 (3) | |
C13 | 0.32778 (19) | 0.27242 (13) | 0.20786 (13) | 0.0409 (3) | |
H13A | 0.3346 | 0.1853 | 0.1796 | 0.049* | |
C14 | 0.29751 (18) | 0.33106 (12) | 0.32700 (13) | 0.0375 (3) | |
C15 | 0.2914 (3) | 0.14435 (14) | 0.37694 (19) | 0.0631 (5) | |
H15A | 0.2866 | 0.1158 | 0.4476 | 0.095* | |
H15B | 0.4139 | 0.1212 | 0.3363 | 0.095* | |
H15C | 0.1825 | 0.1063 | 0.3219 | 0.095* | |
C16 | 0.3765 (19) | 0.2805 (10) | 0.0036 (9) | 0.078 (5) | 0.441 (4) |
H16A | 0.3785 | 0.3337 | −0.0447 | 0.093* | 0.441 (4) |
C16A | 0.3838 (12) | 0.2765 (6) | 0.0018 (4) | 0.046 (2) | 0.559 (4) |
H16B | 0.3959 | 0.1900 | −0.0179 | 0.055* | 0.559 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0595 (6) | 0.0317 (5) | 0.0400 (5) | 0.0043 (4) | 0.0048 (4) | 0.0129 (4) |
O2 | 0.0665 (7) | 0.0350 (5) | 0.0546 (6) | 0.0035 (5) | 0.0063 (5) | 0.0206 (4) |
O3 | 0.0618 (18) | 0.064 (2) | 0.0498 (16) | 0.0027 (14) | 0.0093 (12) | 0.0047 (14) |
O3A | 0.0735 (16) | 0.0759 (18) | 0.0524 (14) | −0.0041 (12) | 0.0180 (11) | 0.0130 (12) |
O4 | 0.0898 (10) | 0.0485 (7) | 0.0610 (8) | 0.0035 (6) | 0.0078 (7) | 0.0177 (6) |
O5 | 0.0660 (8) | 0.0529 (7) | 0.0692 (8) | −0.0063 (6) | −0.0137 (6) | 0.0329 (6) |
O6 | 0.0934 (13) | 0.0469 (8) | 0.1487 (18) | −0.0067 (8) | −0.0135 (11) | 0.0330 (10) |
O7 | 0.0674 (8) | 0.0725 (9) | 0.0644 (8) | −0.0059 (7) | 0.0001 (7) | 0.0131 (7) |
N1 | 0.0372 (6) | 0.0298 (5) | 0.0432 (6) | −0.0010 (4) | −0.0011 (4) | 0.0131 (5) |
N2 | 0.0406 (6) | 0.0322 (5) | 0.0437 (6) | 0.0043 (4) | 0.0011 (5) | 0.0126 (5) |
C1 | 0.0276 (6) | 0.0387 (6) | 0.0441 (7) | 0.0016 (5) | −0.0005 (5) | 0.0149 (5) |
C2 | 0.0415 (7) | 0.0535 (8) | 0.0491 (8) | −0.0006 (6) | −0.0005 (6) | 0.0243 (7) |
C3 | 0.0500 (9) | 0.0739 (11) | 0.0443 (8) | 0.0067 (8) | 0.0037 (7) | 0.0229 (8) |
C4 | 0.0606 (10) | 0.0666 (11) | 0.0439 (8) | 0.0161 (8) | 0.0049 (7) | 0.0078 (7) |
C5 | 0.0540 (9) | 0.0436 (8) | 0.0512 (9) | 0.0139 (7) | 0.0024 (7) | 0.0083 (7) |
C6 | 0.0310 (6) | 0.0382 (7) | 0.0439 (7) | 0.0058 (5) | 0.0007 (5) | 0.0133 (5) |
C7 | 0.0308 (6) | 0.0327 (6) | 0.0430 (7) | 0.0003 (5) | −0.0015 (5) | 0.0149 (5) |
C8 | 0.0506 (8) | 0.0315 (6) | 0.0411 (7) | 0.0011 (5) | 0.0005 (6) | 0.0128 (5) |
C9 | 0.0326 (6) | 0.0345 (6) | 0.0394 (7) | 0.0016 (5) | 0.0006 (5) | 0.0127 (5) |
C10 | 0.0445 (7) | 0.0350 (6) | 0.0470 (7) | 0.0024 (5) | 0.0018 (6) | 0.0162 (6) |
C11 | 0.0419 (7) | 0.0502 (8) | 0.0461 (8) | 0.0026 (6) | 0.0031 (6) | 0.0225 (6) |
C12 | 0.0310 (6) | 0.0509 (8) | 0.0411 (7) | 0.0033 (5) | 0.0037 (5) | 0.0104 (6) |
C13 | 0.0324 (6) | 0.0355 (6) | 0.0516 (8) | 0.0024 (5) | 0.0024 (6) | 0.0087 (6) |
C14 | 0.0316 (6) | 0.0342 (6) | 0.0490 (8) | 0.0015 (5) | 0.0009 (5) | 0.0162 (6) |
C15 | 0.0776 (12) | 0.0351 (8) | 0.0826 (13) | 0.0022 (8) | 0.0069 (10) | 0.0266 (8) |
C16 | 0.039 (6) | 0.085 (9) | 0.116 (9) | −0.005 (5) | −0.002 (5) | 0.042 (7) |
C16A | 0.042 (4) | 0.060 (4) | 0.0252 (19) | 0.007 (3) | 0.011 (2) | −0.004 (2) |
O1—C9 | 1.3609 (17) | C3—H3A | 0.9500 |
O1—C8 | 1.4190 (16) | C4—C5 | 1.378 (2) |
O2—C14 | 1.3638 (17) | C4—H4A | 0.9500 |
O2—C15 | 1.4206 (18) | C5—C6 | 1.390 (2) |
O3—C16 | 1.151 (8) | C5—H5A | 0.9500 |
O3A—C16A | 1.140 (7) | C7—C8 | 1.4840 (19) |
O4—H4WB | 0.841 (15) | C8—H8A | 0.9900 |
O4—H4WA | 0.873 (15) | C8—H8B | 0.9900 |
O5—H5WB | 0.851 (14) | C9—C10 | 1.3880 (19) |
O5—H5WA | 0.853 (15) | C9—C14 | 1.4097 (18) |
O6—H6WA | 0.845 (16) | C10—C11 | 1.381 (2) |
O6—H6WB | 0.850 (16) | C10—H10A | 0.9500 |
O7—H7WB | 0.838 (15) | C11—C12 | 1.378 (2) |
O7—H7WA | 0.814 (15) | C11—H11A | 0.9500 |
N1—C7 | 1.3514 (16) | C12—C13 | 1.397 (2) |
N1—C1 | 1.3768 (18) | C12—C16 | 1.430 (9) |
N1—H1N | 0.832 (13) | C12—C16A | 1.466 (4) |
N2—C7 | 1.3110 (17) | C13—C14 | 1.373 (2) |
N2—C6 | 1.3881 (18) | C13—H13A | 0.9500 |
C1—C2 | 1.387 (2) | C15—H15A | 0.9800 |
C1—C6 | 1.4023 (18) | C15—H15B | 0.9800 |
C2—C3 | 1.374 (2) | C15—H15C | 0.9800 |
C2—H2A | 0.9500 | C16—H16A | 0.9500 |
C3—C4 | 1.396 (3) | C16A—H16B | 0.9500 |
C9—O1—C8 | 116.72 (10) | C7—C8—H8B | 110.0 |
C14—O2—C15 | 117.42 (13) | H8A—C8—H8B | 108.4 |
H4WB—O4—H4WA | 105.6 (17) | O1—C9—C10 | 124.95 (12) |
H5WB—O5—H5WA | 104.9 (17) | O1—C9—C14 | 114.89 (11) |
H6WA—O6—H6WB | 105 (2) | C10—C9—C14 | 120.15 (13) |
H7WB—O7—H7WA | 107.6 (19) | C11—C10—C9 | 119.63 (13) |
C7—N1—C1 | 106.93 (11) | C11—C10—H10A | 120.2 |
C7—N1—H1N | 127.5 (11) | C9—C10—H10A | 120.2 |
C1—N1—H1N | 125.5 (11) | C12—C11—C10 | 120.42 (13) |
C7—N2—C6 | 104.49 (11) | C12—C11—H11A | 119.8 |
N1—C1—C2 | 132.25 (13) | C10—C11—H11A | 119.8 |
N1—C1—C6 | 105.01 (11) | C11—C12—C13 | 120.31 (13) |
C2—C1—C6 | 122.74 (13) | C11—C12—C16 | 119.2 (5) |
C3—C2—C1 | 116.54 (14) | C13—C12—C16 | 120.4 (5) |
C3—C2—H2A | 121.7 | C11—C12—C16A | 120.6 (3) |
C1—C2—H2A | 121.7 | C13—C12—C16A | 119.1 (3) |
C2—C3—C4 | 121.51 (15) | C14—C13—C12 | 120.00 (13) |
C2—C3—H3A | 119.2 | C14—C13—H13A | 120.0 |
C4—C3—H3A | 119.2 | C12—C13—H13A | 120.0 |
C5—C4—C3 | 121.91 (16) | O2—C14—C13 | 125.26 (12) |
C5—C4—H4A | 119.0 | O2—C14—C9 | 115.26 (12) |
C3—C4—H4A | 119.0 | C13—C14—C9 | 119.48 (12) |
C4—C5—C6 | 117.59 (15) | O2—C15—H15A | 109.5 |
C4—C5—H5A | 121.2 | O2—C15—H15B | 109.5 |
C6—C5—H5A | 121.2 | H15A—C15—H15B | 109.5 |
N2—C6—C5 | 130.48 (13) | O2—C15—H15C | 109.5 |
N2—C6—C1 | 109.82 (12) | H15A—C15—H15C | 109.5 |
C5—C6—C1 | 119.70 (13) | H15B—C15—H15C | 109.5 |
N2—C7—N1 | 113.74 (12) | O3—C16—C12 | 131.0 (10) |
N2—C7—C8 | 122.82 (11) | O3—C16—H16A | 114.5 |
N1—C7—C8 | 123.43 (11) | C12—C16—H16A | 114.5 |
O1—C8—C7 | 108.39 (10) | O3A—C16A—C12 | 129.3 (5) |
O1—C8—H8A | 110.0 | O3A—C16A—H16B | 115.4 |
C7—C8—H8A | 110.0 | C12—C16A—H16B | 115.4 |
O1—C8—H8B | 110.0 | ||
C7—N1—C1—C2 | 179.33 (14) | O1—C9—C10—C11 | 179.95 (13) |
C7—N1—C1—C6 | −0.62 (14) | C14—C9—C10—C11 | −0.1 (2) |
N1—C1—C2—C3 | −179.16 (14) | C9—C10—C11—C12 | 0.9 (2) |
C6—C1—C2—C3 | 0.8 (2) | C10—C11—C12—C13 | −0.9 (2) |
C1—C2—C3—C4 | −1.0 (2) | C10—C11—C12—C16 | 177.9 (6) |
C2—C3—C4—C5 | 0.1 (3) | C10—C11—C12—C16A | −179.9 (4) |
C3—C4—C5—C6 | 1.0 (3) | C11—C12—C13—C14 | 0.0 (2) |
C7—N2—C6—C5 | −179.88 (14) | C16—C12—C13—C14 | −178.8 (6) |
C7—N2—C6—C1 | −0.13 (14) | C16A—C12—C13—C14 | 179.0 (4) |
C4—C5—C6—N2 | 178.55 (14) | C15—O2—C14—C13 | 0.1 (2) |
C4—C5—C6—C1 | −1.2 (2) | C15—O2—C14—C9 | −179.54 (13) |
N1—C1—C6—N2 | 0.47 (14) | C12—C13—C14—O2 | −178.79 (12) |
C2—C1—C6—N2 | −179.48 (12) | C12—C13—C14—C9 | 0.8 (2) |
N1—C1—C6—C5 | −179.75 (12) | O1—C9—C14—O2 | −1.17 (17) |
C2—C1—C6—C5 | 0.3 (2) | C10—C9—C14—O2 | 178.85 (12) |
C6—N2—C7—N1 | −0.28 (15) | O1—C9—C14—C13 | 179.18 (11) |
C6—N2—C7—C8 | 179.19 (12) | C10—C9—C14—C13 | −0.81 (19) |
C1—N1—C7—N2 | 0.59 (15) | C11—C12—C16—O3 | 176.2 (10) |
C1—N1—C7—C8 | −178.88 (12) | C13—C12—C16—O3 | −4.9 (16) |
C9—O1—C8—C7 | −177.26 (11) | C16A—C12—C16—O3 | 50 (19) |
N2—C7—C8—O1 | 174.58 (12) | C11—C12—C16A—O3A | −3.5 (10) |
N1—C7—C8—O1 | −6.00 (18) | C13—C12—C16A—O3A | 177.5 (6) |
C8—O1—C9—C10 | 2.33 (19) | C16—C12—C16A—O3A | 51 (20) |
C8—O1—C9—C14 | −177.65 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4WB···O5 | 0.84 (2) | 1.98 (2) | 2.809 (2) | 170 (2) |
O4—H4WA···O5i | 0.87 (2) | 2.04 (2) | 2.880 (2) | 162 (2) |
O5—H5WB···N2 | 0.85 (1) | 1.96 (2) | 2.8003 (16) | 171 (2) |
O5—H5WA···O7ii | 0.85 (2) | 1.94 (2) | 2.7882 (19) | 171 (2) |
O6—H6WA···O4iii | 0.85 (2) | 2.16 (2) | 2.996 (2) | 171 (3) |
O6—H6WB···O2 | 0.85 (2) | 2.40 (2) | 3.187 (3) | 154 (3) |
O7—H7WB···O4iv | 0.84 (2) | 2.01 (2) | 2.844 (2) | 174 (2) |
O7—H7WA···O3A | 0.81 (2) | 1.98 (2) | 2.721 (3) | 151 (2) |
N1—H1N···O6 | 0.83 (1) | 2.02 (1) | 2.8152 (19) | 160 (2) |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) x, y+1, z+1; (iii) −x, −y+1, −z+1; (iv) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C16H14N2O3·4H2O |
Mr | 354.36 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 173 |
a, b, c (Å) | 6.8953 (6), 11.4266 (13), 11.7287 (14) |
α, β, γ (°) | 107.965 (10), 90.906 (8), 91.769 (8) |
V (Å3) | 878.32 (16) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.35 × 0.33 × 0.20 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Eos Gemini diffractometer |
Absorption correction | Multi-scan (CrysAlis RED; Oxford Diffraction, 2010)' |
Tmin, Tmax | 0.964, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8245, 4539, 3499 |
Rint | 0.016 |
(sin θ/λ)max (Å−1) | 0.676 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.152, 1.02 |
No. of reflections | 4539 |
No. of parameters | 273 |
No. of restraints | 17 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.25, −0.36 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2010), CrysAlis RED (Oxford Diffraction, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H4WB···O5 | 0.841 (15) | 1.976 (16) | 2.809 (2) | 170 (2) |
O4—H4WA···O5i | 0.873 (15) | 2.037 (17) | 2.880 (2) | 162 (2) |
O5—H5WB···N2 | 0.851 (14) | 1.956 (15) | 2.8003 (16) | 171 (2) |
O5—H5WA···O7ii | 0.853 (15) | 1.943 (15) | 2.7882 (19) | 170.7 (19) |
O6—H6WA···O4iii | 0.845 (16) | 2.159 (17) | 2.996 (2) | 171 (3) |
O6—H6WB···O2 | 0.850 (16) | 2.40 (2) | 3.187 (3) | 154 (3) |
O7—H7WB···O4iv | 0.838 (15) | 2.009 (16) | 2.844 (2) | 174 (2) |
O7—H7WA···O3A | 0.814 (15) | 1.982 (17) | 2.721 (3) | 151 (2) |
N1—H1N···O6 | 0.832 (13) | 2.018 (14) | 2.8152 (19) | 160.1 (16) |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) x, y+1, z+1; (iii) −x, −y+1, −z+1; (iv) −x+1, −y+1, −z. |
CgX···CgY | Cg···Cg (Å) | CgX···Perp (Å) | CgY···Perp (Å) |
Cg1···Cg3i | 3.6104 (9) | -3.4276 (5) | -3.4041 (5) |
Cg1···Cg3ii | 3.6288 (9) | 3.3426 (5) | 3.4101 (5) |
Cg2···Cg3i | 3.9167 (10) | -3.4841 (6) | -3.4068 (5) |
Acknowledgements
BN thanks Mangalore University for the research facilities and the UGC SAP for financial assistance for the purchase of chemicals. HSY thanks the UOM for the facilities. JPJ acknowledges the NSF–MRI program (grant No. CHE1039027) for funds to purchase the X-ray diffractometer.
References
Akkurt, M., Baktır, Z., Samshuddin, S., Narayana, B. & Yathirajan, H. S. (2011). Acta Cryst. E67, o1088–o1089. Web of Science CSD CrossRef IUCr Journals Google Scholar
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Bouwman, E., Driessen, W. L. & Reedijk, J. (1990). Coord. Chem. Rev. 104, 143–172. CrossRef CAS Web of Science Google Scholar
Jasinski, J. P., Braley, A. N., Samshuddin, S., Narayana, B. & Yathirajan, H. S. (2010). Acta Cryst. E66, o2052. Web of Science CSD CrossRef IUCr Journals Google Scholar
Jasinski, J. P., Miller, W. M., Samshuddin, S., Narayana, B. & Yathirajan, H. S. (2011). Acta Cryst. E67, o834–o835. Web of Science CSD CrossRef IUCr Journals Google Scholar
Jian, F. F., Bei, F. L., Wang, X. & Lu, L. D. (2003). Chinese J. Struct. Chem. 22, 382–386. CAS Google Scholar
Madkour, H. M. F., Farag, A. A., Ramses, S. S. & Ibrahiem, N. A. A. (2006). Phosphorus Sulfur Silicon 181, 255–265. Web of Science CrossRef CAS Google Scholar
Odabaşoğlu, M., Büyükgüngör, O., Narayana, B., Vijesh, A. M. & Yathirajan, H. S. (2007). Acta Cryst. E63, o3199–o3200. Web of Science CSD CrossRef IUCr Journals Google Scholar
Oxford Diffraction (2010). CrysAlis PRO and CrysAlis RED. Oxford Diffraction Ltd, Abingdon, Oxfordshire, England. Google Scholar
Pujar, M. A., Bharamgoudar, T. D. & Sathyanarayana, D. N. (1988). Transition Met. Chem. 13, 423–425. CrossRef CAS Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The benzimidazole ring system and its related compounds play an important role in pharmaceutical and agricultural fields due to their broad spectrum of biological activities (Pujar et al., 1988, Bouwman et al., 1990). The synthesis of novel benzimidazole derivatives remains a main focus of medicinal research. Benzimidazoles are also useful as insecticides, acaricides, nematocides, herbicides and other plant-protective agents in the field of pest control (Madkour et al., 2006). In addition, benzimidazole derivatives have played a crucial role in the theoretical development of heterocyclic chemistry and are also used extensively in organic synthesis. The crystal structures of some benzimidazole derivatives viz., 2-chloromethyl-1H-benzimidazole nitrate (Jian et al., 2003) and 5-methoxy-1H-benzo[d]imidazole-2(3H)-thione (Odabaşoğlu et al., 2007) have been reported. In continuation of our work on the synthesis of benzimidazole containing aldehydes and their chalcones (Jasinski et al., 2010, 2011; Akkurt et al., 2011) and in view of the importance of benzimidazoles, the title compound, (I), was synthesized and its crystal structure is reported herein.
The molecular structure of the title compound is shown in Fig. 1. In (I) the dihedral angle between the mean planes of the benzimidazole ring system and benzene ring is 2.9 (1)°. The aldehyde group is disordered over two sets of sites corresponding to a rotation of approximately 180° about the C12-C16 bond with refined occupancies of 0.441 (4) and 0.559 (4). Bond distances are in normal ranges (Allen et al., 1987). Extensive O—H···O, O—H···N and N—H···O hydrogen bonds (Table 1) in concert with weak π–π stacking interactions (Table 2) create a 3-D network (Fig. 2).