metal-organic compounds
3,5-Diamino-4H-1,2,4-triazol-1-ium hydroxonium bis(pyridine-2,6-dicarboxylato)cobaltate(II) pyridine-2,6-dicarboxylic acid monohydrate
aH.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi 75270, Pakistan, bDepartment of Pure and Applied Chemistry, University of Calabar, Calabar, PMB 1115, Nigeria, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The 2H6N5)(H3O)[Co(C7H3NO4)2]·C7H5NO4·H2O, contains a CoII ion coordinated by four O atoms and two N atoms from two dipicolinate ligands in a disorted octahedral environment, a protonated triazole molecule, a neutral pyridine-2,6-dicarboxylic acid molecule, a hydroxonium ion and a solvent water molecule. In the crystal, the components are linked into a three-dimensional framework by intermolecular O—H⋯O, N—H⋯O and N—H⋯N and weak C—H⋯O hydrogen bonds. In addition, π–π stacking interactions with centroid–centroid distances in the range 3.4809 (7)–3.8145 (6) Å are observed.
of the title complex, (CRelated literature
For the different coordination modes for transition metal–dipicolinate complexes, see: Quaglieri et al. (1972); Hakansson et al. (1993); Okabe & Oya (2000); Aghajani et al. (2009). For crystal structures of related complexes, see: Yousuf et al. (2011); Aghabozorg et al. (2009); Ramos Silva et al. (2008); Wang et al. (2004); MacDonald et al. (2000, 2004). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL and PLATON.
Supporting information
10.1107/S1600536811027917/lh5282sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811027917/lh5282Isup2.hkl
Pyridine-2,6-dicarboxylic acid and 3,5-diamino-1,2,4-triazole were purchased from Merck and Molekula respectively. Cobaltchloride hexahydrate (CoCl2.6H2O) and HPLC grade methanol were Uni-Chem and M TEDIA products, respectively. Deionized water was also used in the procedures when needed.
A method similar to that reported by Yousuf et al. (2011) was used. 1 mmol (0.099 g) of 3,5-diamino- 1,2,4-triazole and 1 mmol of dipicolinic acid (0.167 g) were dissolved in a mixture of methanol/water solution (1:10, 11 ml). The resulting solution was heated to 338 K with stirring. An aqueous solution (1 ml) containing 0.5 mmol (0.119 g) of CoCl2.6H2O was added to the stirred solution. The redish purple suspension was allowed to stir further for 1 hr, and then filtered while hot. The filtrate was kept at room temperature. Well shaped purple crystals of the title compound were formed by slow evaporation of the solution after 2 weeks. Percentage yield based on cobalt is 46.34%.
The N– and O-bound H atoms were located from a difference map and refined freely [N–H = 0.841 (19)–0.877 (18) Å and O–H = 0.78 (2)–0.98 (3) Å]. The remaining H atoms were positioned geometrically [C–H = 0.95 Å] and were refined using a riding model, with Uiso(H) = 1.2Ueq(C). One reflection (0 0 1) blocked by the beamstop and two outlier reflections (-2 -5 24) and (2 - 5 24) were omitted.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The asymmetric unit of (I) showing 30% probability displacement ellipsoids. | |
Fig. 2. The crystal packing of the title compound, showing hydrogen bonds as dashed lines. |
(C2H6N5)(H3O)[Co(C7H3NO4)2]·C7H5NO4·H2O | Z = 2 |
Mr = 693.42 | F(000) = 710 |
Triclinic, P1 | Dx = 1.735 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.0209 (2) Å | Cell parameters from 9943 reflections |
b = 9.2028 (2) Å | θ = 2.9–35.1° |
c = 18.7004 (4) Å | µ = 0.74 mm−1 |
α = 98.536 (1)° | T = 100 K |
β = 96.721 (1)° | Block, purple |
γ = 100.515 (1)° | 0.78 × 0.59 × 0.35 mm |
V = 1327.32 (5) Å3 |
Bruker SMART APEXII CCD area-detector diffractometer | 7698 independent reflections |
Radiation source: fine-focus sealed tube | 7360 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ϕ and ω scans | θmax = 30.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −11→11 |
Tmin = 0.595, Tmax = 0.781 | k = −12→12 |
25547 measured reflections | l = −26→26 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.072 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0325P)2 + 0.8694P] where P = (Fo2 + 2Fc2)/3 |
7698 reflections | (Δ/σ)max = 0.001 |
467 parameters | Δρmax = 0.48 e Å−3 |
0 restraints | Δρmin = −0.43 e Å−3 |
(C2H6N5)(H3O)[Co(C7H3NO4)2]·C7H5NO4·H2O | γ = 100.515 (1)° |
Mr = 693.42 | V = 1327.32 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.0209 (2) Å | Mo Kα radiation |
b = 9.2028 (2) Å | µ = 0.74 mm−1 |
c = 18.7004 (4) Å | T = 100 K |
α = 98.536 (1)° | 0.78 × 0.59 × 0.35 mm |
β = 96.721 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 7698 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 7360 reflections with I > 2σ(I) |
Tmin = 0.595, Tmax = 0.781 | Rint = 0.018 |
25547 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | 0 restraints |
wR(F2) = 0.072 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.48 e Å−3 |
7698 reflections | Δρmin = −0.43 e Å−3 |
467 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Co1 | 0.302228 (19) | 0.644423 (16) | 0.169857 (8) | 0.01036 (5) | |
N1 | 0.31342 (12) | 0.75361 (10) | 0.27349 (5) | 0.01027 (16) | |
N2 | 0.30641 (12) | 0.58813 (10) | 0.06050 (5) | 0.01004 (16) | |
O1 | 0.13428 (11) | 0.80434 (9) | 0.15754 (4) | 0.01381 (15) | |
O2 | 0.45499 (11) | 0.52726 (9) | 0.23827 (4) | 0.01373 (15) | |
O3 | 0.52409 (11) | 0.80151 (9) | 0.14717 (4) | 0.01281 (15) | |
O4 | 0.12604 (11) | 0.43393 (9) | 0.13837 (5) | 0.01510 (16) | |
O5 | 0.00050 (11) | 0.25528 (9) | 0.04207 (5) | 0.01481 (16) | |
O6 | 0.63852 (12) | 0.88973 (10) | 0.05403 (5) | 0.01749 (17) | |
O7 | 0.54563 (11) | 0.51915 (9) | 0.35540 (5) | 0.01517 (16) | |
O8 | 0.06823 (12) | 1.00920 (10) | 0.22102 (5) | 0.01651 (16) | |
C1 | 0.13704 (14) | 0.89743 (12) | 0.21521 (6) | 0.01192 (19) | |
C2 | 0.23804 (14) | 0.87158 (12) | 0.28416 (6) | 0.01092 (18) | |
C3 | 0.25593 (15) | 0.95939 (12) | 0.35273 (6) | 0.01309 (19) | |
H3A | 0.2025 | 1.0434 | 0.3598 | 0.016* | |
C4 | 0.35408 (15) | 0.92139 (13) | 0.41088 (6) | 0.0138 (2) | |
H4A | 0.3688 | 0.9801 | 0.4583 | 0.017* | |
C5 | 0.43087 (15) | 0.79723 (12) | 0.39962 (6) | 0.01307 (19) | |
H5A | 0.4972 | 0.7692 | 0.4388 | 0.016* | |
C6 | 0.40713 (14) | 0.71590 (12) | 0.32909 (6) | 0.01085 (18) | |
C7 | 0.47660 (14) | 0.57714 (12) | 0.30615 (6) | 0.01145 (19) | |
C8 | 0.09977 (14) | 0.37796 (12) | 0.07162 (6) | 0.01156 (19) | |
C9 | 0.19911 (13) | 0.46510 (12) | 0.02260 (6) | 0.01047 (18) | |
C10 | 0.19089 (14) | 0.42474 (12) | −0.05245 (6) | 0.01231 (19) | |
H10A | 0.1149 | 0.3366 | −0.0788 | 0.015* | |
C11 | 0.29789 (15) | 0.51793 (13) | −0.08794 (6) | 0.0145 (2) | |
H11A | 0.2944 | 0.4944 | −0.1394 | 0.017* | |
C12 | 0.41009 (15) | 0.64579 (13) | −0.04790 (6) | 0.0135 (2) | |
H12A | 0.4835 | 0.7103 | −0.0714 | 0.016* | |
C13 | 0.41151 (14) | 0.67618 (12) | 0.02725 (6) | 0.01103 (18) | |
C14 | 0.53451 (14) | 0.80151 (12) | 0.07972 (6) | 0.01191 (19) | |
O9 | 1.31990 (13) | 0.28490 (10) | 0.44827 (5) | 0.01975 (18) | |
O10 | 1.29486 (12) | 0.49673 (10) | 0.51898 (5) | 0.01785 (17) | |
O11 | 0.93965 (12) | 0.82190 (10) | 0.44184 (5) | 0.01879 (17) | |
O12 | 0.83933 (12) | 0.78120 (10) | 0.32170 (5) | 0.01702 (17) | |
N8 | 1.08308 (12) | 0.56516 (10) | 0.41642 (5) | 0.01197 (17) | |
C17 | 0.97897 (14) | 0.60148 (12) | 0.36347 (6) | 0.01172 (19) | |
C18 | 0.92791 (15) | 0.51390 (13) | 0.29409 (6) | 0.0144 (2) | |
H18A | 0.8533 | 0.5439 | 0.2583 | 0.017* | |
C19 | 0.98785 (16) | 0.38218 (13) | 0.27808 (6) | 0.0150 (2) | |
H19A | 0.9538 | 0.3196 | 0.2315 | 0.018* | |
C20 | 1.09842 (15) | 0.34425 (12) | 0.33159 (6) | 0.0144 (2) | |
H20A | 1.1440 | 0.2562 | 0.3223 | 0.017* | |
C21 | 1.14112 (14) | 0.43846 (12) | 0.39946 (6) | 0.01212 (19) | |
C22 | 1.26029 (15) | 0.39687 (13) | 0.45743 (6) | 0.0139 (2) | |
C23 | 0.91764 (14) | 0.74663 (12) | 0.38133 (6) | 0.01276 (19) | |
N3 | 0.79103 (15) | 0.19736 (13) | 0.43972 (6) | 0.0187 (2) | |
N4 | 0.47746 (15) | 0.21239 (12) | 0.21219 (6) | 0.0187 (2) | |
N5 | 0.72357 (13) | 0.03157 (11) | 0.32639 (5) | 0.01330 (18) | |
N6 | 0.62946 (13) | 0.03978 (11) | 0.25973 (5) | 0.01312 (17) | |
N7 | 0.62630 (13) | 0.24252 (11) | 0.33308 (5) | 0.01265 (17) | |
C15 | 0.57107 (15) | 0.16592 (12) | 0.26417 (6) | 0.01257 (19) | |
C16 | 0.71983 (14) | 0.15723 (12) | 0.36943 (6) | 0.01230 (19) | |
O1W | 0.29638 (15) | 0.03156 (12) | 0.08229 (6) | 0.0269 (2) | |
O2W | 0.87798 (12) | 0.10223 (10) | 0.12792 (5) | 0.01508 (16) | |
H1N3 | 0.795 (2) | 0.285 (2) | 0.4615 (11) | 0.027 (5)* | |
H2N3 | 0.863 (3) | 0.147 (2) | 0.4562 (11) | 0.036 (5)* | |
H1N4 | 0.457 (3) | 0.300 (2) | 0.2214 (11) | 0.033 (5)* | |
H2N4 | 0.430 (3) | 0.152 (2) | 0.1733 (11) | 0.027 (5)* | |
H1N6 | 0.609 (2) | −0.036 (2) | 0.2233 (10) | 0.024 (4)* | |
H1N7 | 0.605 (3) | 0.328 (2) | 0.3472 (11) | 0.031 (5)* | |
H1OA | 1.351 (3) | 0.468 (3) | 0.5490 (12) | 0.041 (6)* | |
H12B | 0.806 (3) | 0.868 (2) | 0.3295 (11) | 0.036 (5)* | |
H1W1 | 0.306 (3) | 0.047 (3) | 0.0429 (13) | 0.043 (6)* | |
H2W1 | 0.218 (3) | −0.039 (3) | 0.0821 (12) | 0.039 (6)* | |
H2W2 | 0.947 (3) | 0.065 (3) | 0.1557 (13) | 0.044 (6)* | |
H1W2 | 0.930 (4) | 0.165 (3) | 0.0952 (16) | 0.079 (9)* | |
H3W2 | 0.796 (3) | 0.028 (2) | 0.1059 (12) | 0.036 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.01302 (7) | 0.00984 (7) | 0.00789 (7) | 0.00244 (5) | 0.00097 (5) | 0.00086 (5) |
N1 | 0.0119 (4) | 0.0096 (4) | 0.0093 (4) | 0.0025 (3) | 0.0011 (3) | 0.0019 (3) |
N2 | 0.0109 (4) | 0.0096 (4) | 0.0093 (4) | 0.0019 (3) | 0.0007 (3) | 0.0013 (3) |
O1 | 0.0170 (4) | 0.0134 (4) | 0.0104 (4) | 0.0044 (3) | −0.0007 (3) | 0.0008 (3) |
O2 | 0.0183 (4) | 0.0124 (4) | 0.0110 (4) | 0.0059 (3) | 0.0014 (3) | 0.0010 (3) |
O3 | 0.0158 (4) | 0.0112 (3) | 0.0099 (3) | 0.0005 (3) | 0.0005 (3) | 0.0007 (3) |
O4 | 0.0187 (4) | 0.0136 (4) | 0.0113 (4) | −0.0010 (3) | 0.0022 (3) | 0.0020 (3) |
O5 | 0.0165 (4) | 0.0115 (4) | 0.0142 (4) | −0.0016 (3) | 0.0001 (3) | 0.0023 (3) |
O6 | 0.0186 (4) | 0.0165 (4) | 0.0138 (4) | −0.0050 (3) | 0.0013 (3) | 0.0030 (3) |
O7 | 0.0203 (4) | 0.0137 (4) | 0.0125 (4) | 0.0080 (3) | −0.0011 (3) | 0.0025 (3) |
O8 | 0.0218 (4) | 0.0152 (4) | 0.0144 (4) | 0.0098 (3) | −0.0002 (3) | 0.0033 (3) |
C1 | 0.0130 (5) | 0.0119 (5) | 0.0110 (5) | 0.0025 (4) | 0.0006 (4) | 0.0034 (4) |
C2 | 0.0126 (4) | 0.0104 (4) | 0.0101 (4) | 0.0030 (4) | 0.0013 (4) | 0.0026 (4) |
C3 | 0.0168 (5) | 0.0111 (4) | 0.0118 (5) | 0.0048 (4) | 0.0020 (4) | 0.0011 (4) |
C4 | 0.0180 (5) | 0.0126 (5) | 0.0104 (5) | 0.0038 (4) | 0.0013 (4) | 0.0003 (4) |
C5 | 0.0160 (5) | 0.0130 (5) | 0.0103 (5) | 0.0043 (4) | 0.0000 (4) | 0.0023 (4) |
C6 | 0.0129 (4) | 0.0096 (4) | 0.0104 (4) | 0.0027 (4) | 0.0016 (4) | 0.0024 (3) |
C7 | 0.0123 (4) | 0.0104 (4) | 0.0118 (5) | 0.0031 (4) | 0.0010 (4) | 0.0022 (4) |
C8 | 0.0114 (4) | 0.0111 (4) | 0.0125 (5) | 0.0026 (4) | 0.0007 (4) | 0.0034 (4) |
C9 | 0.0098 (4) | 0.0104 (4) | 0.0111 (5) | 0.0025 (3) | 0.0009 (3) | 0.0016 (3) |
C10 | 0.0120 (5) | 0.0124 (5) | 0.0112 (5) | 0.0020 (4) | −0.0002 (4) | −0.0001 (4) |
C11 | 0.0156 (5) | 0.0172 (5) | 0.0097 (5) | 0.0024 (4) | 0.0013 (4) | 0.0011 (4) |
C12 | 0.0143 (5) | 0.0151 (5) | 0.0108 (5) | 0.0012 (4) | 0.0019 (4) | 0.0029 (4) |
C13 | 0.0110 (4) | 0.0104 (4) | 0.0110 (5) | 0.0014 (4) | 0.0008 (4) | 0.0013 (3) |
C14 | 0.0128 (5) | 0.0106 (4) | 0.0112 (5) | 0.0014 (4) | 0.0004 (4) | 0.0009 (4) |
O9 | 0.0265 (5) | 0.0157 (4) | 0.0186 (4) | 0.0114 (3) | 0.0001 (3) | 0.0019 (3) |
O10 | 0.0241 (4) | 0.0166 (4) | 0.0129 (4) | 0.0101 (3) | −0.0040 (3) | 0.0006 (3) |
O11 | 0.0241 (4) | 0.0176 (4) | 0.0149 (4) | 0.0096 (3) | −0.0003 (3) | −0.0005 (3) |
O12 | 0.0231 (4) | 0.0135 (4) | 0.0149 (4) | 0.0088 (3) | −0.0028 (3) | 0.0020 (3) |
N8 | 0.0135 (4) | 0.0112 (4) | 0.0117 (4) | 0.0038 (3) | 0.0014 (3) | 0.0022 (3) |
C17 | 0.0130 (5) | 0.0109 (4) | 0.0114 (5) | 0.0032 (4) | 0.0013 (4) | 0.0021 (4) |
C18 | 0.0172 (5) | 0.0141 (5) | 0.0112 (5) | 0.0036 (4) | −0.0005 (4) | 0.0019 (4) |
C19 | 0.0201 (5) | 0.0134 (5) | 0.0111 (5) | 0.0031 (4) | 0.0024 (4) | 0.0008 (4) |
C20 | 0.0185 (5) | 0.0112 (5) | 0.0142 (5) | 0.0044 (4) | 0.0036 (4) | 0.0021 (4) |
C21 | 0.0139 (5) | 0.0116 (5) | 0.0115 (5) | 0.0036 (4) | 0.0014 (4) | 0.0033 (4) |
C22 | 0.0159 (5) | 0.0129 (5) | 0.0131 (5) | 0.0039 (4) | 0.0012 (4) | 0.0027 (4) |
C23 | 0.0125 (5) | 0.0125 (5) | 0.0135 (5) | 0.0036 (4) | 0.0004 (4) | 0.0029 (4) |
N3 | 0.0260 (5) | 0.0177 (5) | 0.0116 (4) | 0.0078 (4) | −0.0019 (4) | −0.0004 (4) |
N4 | 0.0256 (5) | 0.0145 (5) | 0.0148 (5) | 0.0072 (4) | −0.0046 (4) | 0.0009 (4) |
N5 | 0.0177 (4) | 0.0120 (4) | 0.0106 (4) | 0.0050 (3) | 0.0003 (3) | 0.0021 (3) |
N6 | 0.0180 (4) | 0.0102 (4) | 0.0105 (4) | 0.0037 (3) | −0.0004 (3) | 0.0006 (3) |
N7 | 0.0170 (4) | 0.0101 (4) | 0.0109 (4) | 0.0047 (3) | 0.0008 (3) | 0.0004 (3) |
C15 | 0.0152 (5) | 0.0099 (4) | 0.0120 (5) | 0.0017 (4) | 0.0019 (4) | 0.0013 (4) |
C16 | 0.0145 (5) | 0.0111 (4) | 0.0116 (5) | 0.0029 (4) | 0.0022 (4) | 0.0024 (4) |
O1W | 0.0335 (6) | 0.0282 (5) | 0.0137 (4) | −0.0070 (4) | −0.0010 (4) | 0.0062 (4) |
O2W | 0.0156 (4) | 0.0137 (4) | 0.0141 (4) | −0.0003 (3) | −0.0010 (3) | 0.0031 (3) |
Co1—N1 | 2.0302 (9) | O9—C22 | 1.2110 (14) |
Co1—N2 | 2.0395 (9) | O10—C22 | 1.3283 (14) |
Co1—O4 | 2.1363 (8) | O10—H1OA | 0.78 (2) |
Co1—O1 | 2.1875 (8) | O11—C23 | 1.2113 (14) |
Co1—O2 | 2.1967 (8) | O12—C23 | 1.3242 (13) |
Co1—O3 | 2.2037 (8) | O12—H12B | 0.89 (2) |
N1—C6 | 1.3363 (14) | N8—C17 | 1.3402 (14) |
N1—C2 | 1.3371 (13) | N8—C21 | 1.3415 (14) |
N2—C13 | 1.3329 (14) | C17—C18 | 1.3949 (15) |
N2—C9 | 1.3373 (13) | C17—C23 | 1.5112 (15) |
O1—C1 | 1.2691 (13) | C18—C19 | 1.3888 (16) |
O2—C7 | 1.2644 (13) | C18—H18A | 0.9500 |
O3—C14 | 1.2738 (13) | C19—C20 | 1.3851 (16) |
O4—C8 | 1.2553 (14) | C19—H19A | 0.9500 |
O5—C8 | 1.2640 (13) | C20—C21 | 1.3939 (15) |
O6—C14 | 1.2443 (14) | C20—H20A | 0.9500 |
O7—C7 | 1.2546 (13) | C21—C22 | 1.4999 (15) |
O8—C1 | 1.2500 (13) | N3—C16 | 1.3393 (15) |
C1—C2 | 1.5141 (15) | N3—H1N3 | 0.84 (2) |
C2—C3 | 1.3873 (15) | N3—H2N3 | 0.86 (2) |
C3—C4 | 1.3920 (15) | N4—C15 | 1.3271 (15) |
C3—H3A | 0.9500 | N4—H1N4 | 0.84 (2) |
C4—C5 | 1.3946 (15) | N4—H2N4 | 0.85 (2) |
C4—H4A | 0.9500 | N5—C16 | 1.3146 (14) |
C5—C6 | 1.3901 (15) | N5—N6 | 1.3992 (13) |
C5—H5A | 0.9500 | N6—C15 | 1.3238 (14) |
C6—C7 | 1.5094 (15) | N6—H1N6 | 0.876 (19) |
C8—C9 | 1.5081 (15) | N7—C15 | 1.3553 (14) |
C9—C10 | 1.3882 (15) | N7—C16 | 1.3765 (14) |
C10—C11 | 1.3950 (16) | N7—H1N7 | 0.84 (2) |
C10—H10A | 0.9500 | O1W—H1W1 | 0.78 (2) |
C11—C12 | 1.3962 (15) | O1W—H2W1 | 0.82 (2) |
C11—H11A | 0.9500 | O2W—H2W2 | 0.86 (2) |
C12—C13 | 1.3899 (15) | O2W—H1W2 | 0.98 (3) |
C12—H12A | 0.9500 | O2W—H3W2 | 0.87 (2) |
C13—C14 | 1.5128 (15) | ||
N1—Co1—N2 | 165.60 (4) | C12—C11—H11A | 120.0 |
N1—Co1—O4 | 116.74 (4) | C13—C12—C11 | 118.22 (10) |
N2—Co1—O4 | 75.79 (3) | C13—C12—H12A | 120.9 |
N1—Co1—O1 | 76.28 (3) | C11—C12—H12A | 120.9 |
N2—Co1—O1 | 94.70 (3) | N2—C13—C12 | 121.33 (10) |
O4—Co1—O1 | 102.06 (3) | N2—C13—C14 | 113.26 (9) |
N1—Co1—O2 | 75.36 (3) | C12—C13—C14 | 125.30 (10) |
N2—Co1—O2 | 114.18 (3) | O6—C14—O3 | 126.51 (10) |
O4—Co1—O2 | 85.99 (3) | O6—C14—C13 | 118.22 (10) |
O1—Co1—O2 | 151.12 (3) | O3—C14—C13 | 115.21 (9) |
N1—Co1—O3 | 93.99 (3) | C22—O10—H1OA | 110.1 (16) |
N2—Co1—O3 | 74.89 (3) | C23—O12—H12B | 113.6 (13) |
O4—Co1—O3 | 148.33 (3) | C17—N8—C21 | 116.54 (10) |
O1—Co1—O3 | 92.04 (3) | N8—C17—C18 | 123.48 (10) |
O2—Co1—O3 | 95.24 (3) | N8—C17—C23 | 116.87 (9) |
C6—N1—C2 | 120.70 (9) | C18—C17—C23 | 119.64 (10) |
C6—N1—Co1 | 120.21 (7) | C19—C18—C17 | 118.96 (10) |
C2—N1—Co1 | 118.84 (7) | C19—C18—H18A | 120.5 |
C13—N2—C9 | 120.81 (9) | C17—C18—H18A | 120.5 |
C13—N2—Co1 | 119.95 (7) | C20—C19—C18 | 118.44 (10) |
C9—N2—Co1 | 119.22 (7) | C20—C19—H19A | 120.8 |
C1—O1—Co1 | 114.51 (7) | C18—C19—H19A | 120.8 |
C7—O2—Co1 | 115.16 (7) | C19—C20—C21 | 118.38 (10) |
C14—O3—Co1 | 115.29 (7) | C19—C20—H20A | 120.8 |
C8—O4—Co1 | 116.54 (7) | C21—C20—H20A | 120.8 |
O8—C1—O1 | 127.20 (10) | N8—C21—C20 | 124.19 (10) |
O8—C1—C2 | 116.62 (10) | N8—C21—C22 | 117.51 (10) |
O1—C1—C2 | 116.17 (9) | C20—C21—C22 | 118.30 (10) |
N1—C2—C3 | 121.32 (10) | O9—C22—O10 | 123.98 (11) |
N1—C2—C1 | 113.46 (9) | O9—C22—C21 | 123.16 (11) |
C3—C2—C1 | 125.22 (10) | O10—C22—C21 | 112.85 (10) |
C2—C3—C4 | 118.37 (10) | O11—C23—O12 | 124.81 (10) |
C2—C3—H3A | 120.8 | O11—C23—C17 | 124.43 (10) |
C4—C3—H3A | 120.8 | O12—C23—C17 | 110.74 (9) |
C3—C4—C5 | 120.10 (10) | C16—N3—H1N3 | 119.3 (13) |
C3—C4—H4A | 120.0 | C16—N3—H2N3 | 117.9 (14) |
C5—C4—H4A | 120.0 | H1N3—N3—H2N3 | 118.9 (19) |
C6—C5—C4 | 117.77 (10) | C15—N4—H1N4 | 117.7 (14) |
C6—C5—H5A | 121.1 | C15—N4—H2N4 | 120.0 (13) |
C4—C5—H5A | 121.1 | H1N4—N4—H2N4 | 121.8 (19) |
N1—C6—C5 | 121.75 (10) | C16—N5—N6 | 104.54 (9) |
N1—C6—C7 | 112.49 (9) | C15—N6—N5 | 110.78 (9) |
C5—C6—C7 | 125.75 (10) | C15—N6—H1N6 | 128.7 (12) |
O7—C7—O2 | 125.78 (10) | N5—N6—H1N6 | 120.4 (12) |
O7—C7—C6 | 117.92 (10) | C15—N7—C16 | 107.23 (9) |
O2—C7—C6 | 116.27 (9) | C15—N7—H1N7 | 122.3 (13) |
O4—C8—O5 | 126.31 (10) | C16—N7—H1N7 | 130.4 (13) |
O4—C8—C9 | 116.39 (9) | N6—C15—N4 | 127.91 (11) |
O5—C8—C9 | 117.30 (10) | N6—C15—N7 | 106.84 (10) |
N2—C9—C10 | 121.80 (10) | N4—C15—N7 | 125.25 (10) |
N2—C9—C8 | 111.81 (9) | N5—C16—N3 | 125.83 (11) |
C10—C9—C8 | 126.33 (10) | N5—C16—N7 | 110.61 (10) |
C9—C10—C11 | 117.79 (10) | N3—C16—N7 | 123.53 (10) |
C9—C10—H10A | 121.1 | H1W1—O1W—H2W1 | 112 (2) |
C11—C10—H10A | 121.1 | H2W2—O2W—H1W2 | 117 (2) |
C10—C11—C12 | 120.03 (10) | H2W2—O2W—H3W2 | 107 (2) |
C10—C11—H11A | 120.0 | H1W2—O2W—H3W2 | 114 (2) |
N2—Co1—N1—C6 | −129.11 (14) | Co1—O2—C7—O7 | 173.12 (9) |
O4—Co1—N1—C6 | 81.84 (9) | Co1—O2—C7—C6 | −4.72 (12) |
O1—Co1—N1—C6 | 178.61 (9) | N1—C6—C7—O7 | −170.09 (10) |
O2—Co1—N1—C6 | 4.12 (8) | C5—C6—C7—O7 | 8.47 (17) |
O3—Co1—N1—C6 | −90.27 (8) | N1—C6—C7—O2 | 7.92 (14) |
N2—Co1—N1—C2 | 45.17 (19) | C5—C6—C7—O2 | −173.51 (11) |
O4—Co1—N1—C2 | −103.88 (8) | Co1—O4—C8—O5 | −179.79 (9) |
O1—Co1—N1—C2 | −7.12 (8) | Co1—O4—C8—C9 | 1.30 (12) |
O2—Co1—N1—C2 | 178.39 (9) | C13—N2—C9—C10 | −0.75 (16) |
O3—Co1—N1—C2 | 84.01 (8) | Co1—N2—C9—C10 | 177.15 (8) |
N1—Co1—N2—C13 | 30.87 (19) | C13—N2—C9—C8 | 176.77 (9) |
O4—Co1—N2—C13 | −177.41 (9) | Co1—N2—C9—C8 | −5.33 (12) |
O1—Co1—N2—C13 | 81.32 (8) | O4—C8—C9—N2 | 2.47 (14) |
O2—Co1—N2—C13 | −98.53 (8) | O5—C8—C9—N2 | −176.54 (10) |
O3—Co1—N2—C13 | −9.53 (8) | O4—C8—C9—C10 | 179.86 (10) |
N1—Co1—N2—C9 | −147.05 (13) | O5—C8—C9—C10 | 0.85 (16) |
O4—Co1—N2—C9 | 4.67 (8) | N2—C9—C10—C11 | −0.58 (16) |
O1—Co1—N2—C9 | −96.60 (8) | C8—C9—C10—C11 | −177.72 (10) |
O2—Co1—N2—C9 | 83.55 (8) | C9—C10—C11—C12 | 0.86 (16) |
O3—Co1—N2—C9 | 172.55 (9) | C10—C11—C12—C13 | 0.11 (17) |
N1—Co1—O1—C1 | 7.60 (8) | C9—N2—C13—C12 | 1.79 (16) |
N2—Co1—O1—C1 | −161.02 (8) | Co1—N2—C13—C12 | −176.09 (8) |
O4—Co1—O1—C1 | 122.53 (8) | C9—N2—C13—C14 | −174.64 (9) |
O2—Co1—O1—C1 | 18.69 (12) | Co1—N2—C13—C14 | 7.48 (12) |
O3—Co1—O1—C1 | −86.02 (8) | C11—C12—C13—N2 | −1.46 (17) |
N1—Co1—O2—C7 | 0.71 (8) | C11—C12—C13—C14 | 174.52 (10) |
N2—Co1—O2—C7 | 169.25 (8) | Co1—O3—C14—O6 | 172.81 (10) |
O4—Co1—O2—C7 | −118.28 (8) | Co1—O3—C14—C13 | −10.06 (12) |
O1—Co1—O2—C7 | −10.43 (12) | N2—C13—C14—O6 | 179.76 (10) |
O3—Co1—O2—C7 | 93.47 (8) | C12—C13—C14—O6 | 3.49 (17) |
N1—Co1—O3—C14 | −160.07 (8) | N2—C13—C14—O3 | 2.37 (14) |
N2—Co1—O3—C14 | 10.63 (8) | C12—C13—C14—O3 | −173.89 (11) |
O4—Co1—O3—C14 | 33.44 (11) | C21—N8—C17—C18 | 1.17 (16) |
O1—Co1—O3—C14 | −83.69 (8) | C21—N8—C17—C23 | −178.06 (10) |
O2—Co1—O3—C14 | 124.29 (8) | N8—C17—C18—C19 | −0.37 (18) |
N1—Co1—O4—C8 | 169.32 (8) | C23—C17—C18—C19 | 178.84 (10) |
N2—Co1—O4—C8 | −3.10 (8) | C17—C18—C19—C20 | −0.96 (17) |
O1—Co1—O4—C8 | 88.76 (8) | C18—C19—C20—C21 | 1.41 (17) |
O2—Co1—O4—C8 | −119.28 (8) | C17—N8—C21—C20 | −0.67 (17) |
O3—Co1—O4—C8 | −25.80 (12) | C17—N8—C21—C22 | 178.97 (10) |
Co1—O1—C1—O8 | 171.75 (10) | C19—C20—C21—N8 | −0.61 (18) |
Co1—O1—C1—C2 | −6.90 (12) | C19—C20—C21—C22 | 179.75 (10) |
C6—N1—C2—C3 | 0.73 (16) | N8—C21—C22—O9 | 179.71 (11) |
Co1—N1—C2—C3 | −173.52 (8) | C20—C21—C22—O9 | −0.62 (18) |
C6—N1—C2—C1 | −179.91 (9) | N8—C21—C22—O10 | −1.23 (15) |
Co1—N1—C2—C1 | 5.85 (12) | C20—C21—C22—O10 | 178.43 (10) |
O8—C1—C2—N1 | −177.62 (10) | N8—C17—C23—O11 | −8.97 (17) |
O1—C1—C2—N1 | 1.18 (14) | C18—C17—C23—O11 | 171.78 (12) |
O8—C1—C2—C3 | 1.72 (17) | N8—C17—C23—O12 | 170.01 (10) |
O1—C1—C2—C3 | −179.48 (11) | C18—C17—C23—O12 | −9.25 (15) |
N1—C2—C3—C4 | −0.38 (17) | C16—N5—N6—C15 | −0.68 (13) |
C1—C2—C3—C4 | −179.67 (10) | N5—N6—C15—N4 | 179.92 (12) |
C2—C3—C4—C5 | −0.34 (17) | N5—N6—C15—N7 | 0.39 (13) |
C3—C4—C5—C6 | 0.70 (17) | C16—N7—C15—N6 | 0.05 (13) |
C2—N1—C6—C5 | −0.35 (16) | C16—N7—C15—N4 | −179.50 (11) |
Co1—N1—C6—C5 | 173.82 (8) | N6—N5—C16—N3 | 178.62 (11) |
C2—N1—C6—C7 | 178.28 (9) | N6—N5—C16—N7 | 0.70 (12) |
Co1—N1—C6—C7 | −7.55 (12) | C15—N7—C16—N5 | −0.49 (13) |
C4—C5—C6—N1 | −0.37 (17) | C15—N7—C16—N3 | −178.47 (11) |
C4—C5—C6—C7 | −178.81 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H1N3···O10i | 0.841 (19) | 2.249 (18) | 3.0304 (15) | 154.5 (17) |
N3—H1N3···N8i | 0.841 (19) | 2.47 (2) | 3.1379 (15) | 136.5 (16) |
N3—H2N3···O11i | 0.86 (2) | 2.28 (2) | 2.9563 (15) | 135.7 (17) |
N4—H1N4···O2 | 0.85 (2) | 2.072 (19) | 2.9084 (14) | 169 (2) |
N4—H2N4···O1W | 0.85 (2) | 1.96 (2) | 2.8057 (16) | 172 (2) |
N6—H1N6···O3ii | 0.877 (18) | 1.870 (18) | 2.7368 (12) | 169.7 (16) |
N7—H1N7···O7 | 0.85 (2) | 1.89 (2) | 2.7245 (13) | 167 (2) |
O10—H1OA···O7i | 0.79 (2) | 1.86 (2) | 2.5775 (13) | 152 (3) |
O1W—H1W1···O6iii | 0.78 (2) | 2.06 (2) | 2.8315 (14) | 172 (2) |
O1W—H2W1···O1ii | 0.82 (3) | 2.23 (3) | 2.8901 (14) | 138 (2) |
O2W—H2W2···O8iv | 0.87 (3) | 1.67 (2) | 2.5279 (13) | 170 (2) |
O2W—H1W2···O5v | 0.98 (3) | 1.48 (3) | 2.4622 (13) | 177 (3) |
O2W—H3W2···O6ii | 0.87 (2) | 1.71 (2) | 2.5746 (13) | 174 (2) |
O12—H12B···N5vi | 0.89 (2) | 1.76 (2) | 2.6303 (14) | 169 (2) |
C3—H3A···O9vii | 0.95 | 2.52 | 3.1725 (14) | 126 |
C5—H5A···O9i | 0.95 | 2.59 | 3.5380 (15) | 175 |
C10—H10A···O1viii | 0.95 | 2.38 | 3.2669 (14) | 156 |
C19—H19A···O2W | 0.95 | 2.50 | 3.4269 (15) | 165 |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) x, y−1, z; (iii) −x+1, −y+1, −z; (iv) x+1, y−1, z; (v) x+1, y, z; (vi) x, y+1, z; (vii) x−1, y+1, z; (viii) −x, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | (C2H6N5)(H3O)[Co(C7H3NO4)2]·C7H5NO4·H2O |
Mr | 693.42 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 8.0209 (2), 9.2028 (2), 18.7004 (4) |
α, β, γ (°) | 98.536 (1), 96.721 (1), 100.515 (1) |
V (Å3) | 1327.32 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.74 |
Crystal size (mm) | 0.78 × 0.59 × 0.35 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.595, 0.781 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 25547, 7698, 7360 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.027, 0.072, 1.05 |
No. of reflections | 7698 |
No. of parameters | 467 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.48, −0.43 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H1N3···O10i | 0.841 (19) | 2.249 (18) | 3.0304 (15) | 154.5 (17) |
N3—H1N3···N8i | 0.841 (19) | 2.47 (2) | 3.1379 (15) | 136.5 (16) |
N3—H2N3···O11i | 0.86 (2) | 2.28 (2) | 2.9563 (15) | 135.7 (17) |
N4—H1N4···O2 | 0.85 (2) | 2.072 (19) | 2.9084 (14) | 169 (2) |
N4—H2N4···O1W | 0.85 (2) | 1.96 (2) | 2.8057 (16) | 172 (2) |
N6—H1N6···O3ii | 0.877 (18) | 1.870 (18) | 2.7368 (12) | 169.7 (16) |
N7—H1N7···O7 | 0.85 (2) | 1.89 (2) | 2.7245 (13) | 167 (2) |
O10—H1OA···O7i | 0.79 (2) | 1.86 (2) | 2.5775 (13) | 152 (3) |
O1W—H1W1···O6iii | 0.78 (2) | 2.06 (2) | 2.8315 (14) | 172 (2) |
O1W—H2W1···O1ii | 0.82 (3) | 2.23 (3) | 2.8901 (14) | 138 (2) |
O2W—H2W2···O8iv | 0.87 (3) | 1.67 (2) | 2.5279 (13) | 170 (2) |
O2W—H1W2···O5v | 0.98 (3) | 1.48 (3) | 2.4622 (13) | 177 (3) |
O2W—H3W2···O6ii | 0.87 (2) | 1.71 (2) | 2.5746 (13) | 174 (2) |
O12—H12B···N5vi | 0.89 (2) | 1.76 (2) | 2.6303 (14) | 169 (2) |
C3—H3A···O9vii | 0.95 | 2.52 | 3.1725 (14) | 126 |
C5—H5A···O9i | 0.95 | 2.59 | 3.5380 (15) | 175 |
C10—H10A···O1viii | 0.95 | 2.38 | 3.2669 (14) | 156 |
C19—H19A···O2W | 0.95 | 2.50 | 3.4269 (15) | 165 |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) x, y−1, z; (iii) −x+1, −y+1, −z; (iv) x+1, y−1, z; (v) x+1, y, z; (vi) x, y+1, z; (vii) x−1, y+1, z; (viii) −x, −y+1, −z. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
AJ thanks The Academy of Sciences for the Developing World (TWAS) for the award of a Research and Advanced Training Fellowship, and the H·E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, for providing research facilities. SY thanks the School of Physics, Universiti Sains Malaysia, for providing X-ray diffraction research facilities. HKF and MH thank the Malaysian Government and Universiti Sains Malaysia (USM) for the Research University Grant No. 1001/PFIZIK/811160. MH also thanks USM for a post-doctoral research fellowship.
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Pyridine-2,6 dicarboxylic acid (H2dipic) and its anions (dipic2- & dipicH-) have been identified to be well suited for the construction of multidimensional frameworks with simple metal ions and non-metal cations due to the presence of heterocyclic nitrogen atoms and two carboxylate groups. A range of different coordination modes exists in transition metal-dipicolinate complexes (Quaglieri et al., 1972, Hakansson et al., 1993, Okabe & Oya, 2000) depending on whether the anionic or protonated forms of the carboxylates are coordinated to the metal ion. It has been observed that providing suitable conditions for the transfer of acidic protons to appropriate bases will result in increased intermolecular interactions and stabilization of the resulting system (Aghajani et al., 2009). In recent work on the study of the structural features of molecules containing metal chelate and triazole rings, we have determined the crystal structure of a Cu(II) with a derivative of 1,2,4-triazole and dipicolinic acid (Yousuf et al., 2011). Herein, we report the crystal structure of the title complex (I).
The asymmetric unit of (I) is shown in Fig. 1. It contains a CoII ion, two tridentate dipicolinte ligands, a protonated triazole molecule, a neutral pyridine 2,6-dicarboxylic acid molecule, a hydroxonium ion and a solvent water molecule. The CoII ion is in a distorted octahedral coordination environment formed by four oxygen atoms and two nitrogen atoms from two dipicolinate ligands. The two dipiconilate ligands are assembled approximately perpendicular to each other around the CoII ion with atoms O3 and O4 in the axial sites and atoms N1/N2/O1/O2 forming the equatorial sites. All bond lengths are in agreement with those common to related structures (Yousuf et al., 2011; Aghabozorg et al., 2009; Ramos Silva et al., 2008; Wang et al., 2004; MacDonald et al., 2000,2004).
In the crystal structure (Fig. 2), intermolecular O—H···O, N—H···O, N—H···N and weak C—H···O (Table 1) hydrogen bonds form a three-dimensional network. The network is further stabilized by π–π stacking interactions between the centroids of Co1/O2/N1/C6/C7 (Cg1), Co1/O3/N2/C13/C14 (Cg2), N1/C2–C6 (Cg3), N2/C9–C13 (Cg4), N8/C17–C21 (Cg5) and N5–N7/C15/C16 (Cg6) rings, with Cg1···Cg5i, Cg2···Cg4ii, Cg3···Cg5iii, Cg3···Cg6iv and Cg4···Cg4v, distances of 3.6235 (6) Å, 3.8145 (6) Å, 3.7500 (7) Å, 3.5247 (7) Å and 3.4809 (7) Å, respectively [symmetry codes: (i) -1+x, y, z; (ii) 1-x, 1-y, -z; (iii) -1+x, y, z; (iv) x, -1+y, z; (v) -x, 1-y, -z].