organic compounds
9-[(Furan-2-ylmethyl)amino]-5-(3,4,5-trimethoxyphenyl)-5,5a,8a,9-tetrahydrofuro[3′,4′:6,7]naphtho[2,3-d][1,3]dioxol-6(8H)-one
aSchool of Pharmacy, Tianjin Medical University, Tianjin 300070, People's Republic of China, bRoom of Pharmacognosy, Medical College of Chinese People's Armed Police Forces, Tianjin 300162, People's Republic of China, and cTianjin Key Laboratory for Biomarkers of Occupational, and Environmental Hazards, Tianjin 300162, People's Republic of China
*Correspondence e-mail: zhoujing@tijmu.edu.cn
In title compound, C27H27NO8, the dihydrofuran-2(3H)-one ring and the six-membered ring fused to it both display envelope conformations. The dihedral angle between the benzene ring of the benzo[d][1,3]dioxole group and the other benzene ring is 60.59 (2)°. In the crystal, weak intermolecular C—H⋯O hydrogen bonds link the molecules into a three-dimensional network. The furan ring is disordered over two sets of sites with occupancies of 0.722 (7) and 0.278 (7)
Related literature
For podophyllotoxin derivatives synthesized by our group, see: Lu et al. (2010); Yu et al. (2008); Zhao et al. (2009). For bond-length and angle data of related structures, see: Feng et al. (2008); Zhang et al. (1994); Zuo et al. (2009).
Experimental
Crystal data
|
Refinement
|
Data collection: CrystalClear (Rigaku, 2007); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811027735/rz2621sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811027735/rz2621Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811027735/rz2621Isup3.cml
The title compound was synthesized by two steps. A mixture of furan-2-carbaldehyde (0.115 g, 1.2 mmol), 4β-amino podophyllotoxin (0.420 g, 1 mmol) and two drops of acetic acid in 95% ethanol (30 ml) was stirred for 6 h, then an appropriate amount of NaBH4was added and the mixture stirred for 1 h at 273 K. After the addition of 5% HCl (5 ml) to end off the reaction, the mixture was concentrated in vacuo and the pH adjusted to basic conditions with a saturated NaHCO3 solution. The reaction mixture was extracted with CH2Cl2, dried over MgSO4 and concentrated in vacuo. The residue was dissolved in methanol and slow evaporation over two weeks at room temperature gave colourless crystals suitable for X-ray analysis
All H atoms bound to C atoms were found in a difference Fourier map, and included in the final cycles of
using a riding model, with C—H = 0.95–1.00 Å and with Uiso(H) = 1.2Ueq(C) for aryl and methylene H atoms and 1.5Ueq(C) for the methyl H atoms. The amine H atom was refined freely. 690 Friedel pairs were merged. Similarity restraints in distances and thermal parameters were used in order to attain a reasonable geometry of the disordered furan ring.Data collection: CrystalClear (Rigaku, 2007); cell
CrystalClear (Rigaku, 2007); data reduction: CrystalClear (Rigaku, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound, with displacement ellipsoids drawn at the 40% probability level. |
C27H27NO8 | F(000) = 520 |
Mr = 493.50 | Dx = 1.432 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 4290 reflections |
a = 11.7374 (15) Å | θ = 1.8–28.0° |
b = 8.4087 (8) Å | µ = 0.11 mm−1 |
c = 11.8848 (16) Å | T = 113 K |
β = 102.693 (5)° | Prism, colourless |
V = 1144.3 (2) Å3 | 0.20 × 0.18 × 0.12 mm |
Z = 2 |
Rigaku Saturn724 CCD diffractometer | 2950 independent reflections |
Radiation source: rotating anode | 2262 reflections with I > 2σ(I) |
Multilayer monochromator | Rint = 0.047 |
Detector resolution: 14.22 pixels mm-1 | θmax = 28.0°, θmin = 1.8° |
ω and ϕ scans | h = −15→15 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007) | k = −11→10 |
Tmin = 0.979, Tmax = 0.987 | l = −15→15 |
14991 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.067 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.97 | w = 1/[σ2(Fo2) + (0.036P)2] where P = (Fo2 + 2Fc2)/3 |
2950 reflections | (Δ/σ)max = 0.001 |
372 parameters | Δρmax = 0.17 e Å−3 |
41 restraints | Δρmin = −0.22 e Å−3 |
C27H27NO8 | V = 1144.3 (2) Å3 |
Mr = 493.50 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 11.7374 (15) Å | µ = 0.11 mm−1 |
b = 8.4087 (8) Å | T = 113 K |
c = 11.8848 (16) Å | 0.20 × 0.18 × 0.12 mm |
β = 102.693 (5)° |
Rigaku Saturn724 CCD diffractometer | 2950 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007) | 2262 reflections with I > 2σ(I) |
Tmin = 0.979, Tmax = 0.987 | Rint = 0.047 |
14991 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 41 restraints |
wR(F2) = 0.067 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.97 | Δρmax = 0.17 e Å−3 |
2950 reflections | Δρmin = −0.22 e Å−3 |
372 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 1.3701 (3) | 0.9258 (3) | 0.7345 (3) | 0.0259 (8) | 0.722 (7) |
C1 | 1.4119 (3) | 0.9416 (4) | 0.6362 (3) | 0.0258 (9) | 0.722 (7) |
H1A | 1.4695 | 1.0165 | 0.6263 | 0.031* | 0.722 (7) |
C2 | 1.3609 (4) | 0.8374 (6) | 0.5562 (4) | 0.0255 (13) | 0.722 (7) |
H2 | 1.3750 | 0.8249 | 0.4810 | 0.031* | 0.722 (7) |
C3 | 1.2805 (3) | 0.7482 (5) | 0.6062 (3) | 0.0225 (8) | 0.722 (7) |
H3 | 1.2312 | 0.6647 | 0.5703 | 0.027* | 0.722 (7) |
C4 | 1.2879 (4) | 0.8046 (6) | 0.7136 (4) | 0.0219 (5) | 0.722 (7) |
O1' | 1.2713 (6) | 0.6797 (10) | 0.6369 (6) | 0.029 (2) | 0.278 (7) |
C1' | 1.3229 (8) | 0.7386 (14) | 0.5538 (7) | 0.032 (3) | 0.278 (7) |
H1' | 1.3261 | 0.6824 | 0.4852 | 0.038* | 0.278 (7) |
C2' | 1.3680 (11) | 0.8821 (13) | 0.5781 (10) | 0.034 (5) | 0.278 (7) |
H2' | 1.4078 | 0.9450 | 0.5325 | 0.040* | 0.278 (7) |
C3' | 1.3437 (11) | 0.9230 (11) | 0.6900 (10) | 0.027 (3) | 0.278 (7) |
H3' | 1.3639 | 1.0178 | 0.7332 | 0.033* | 0.278 (7) |
C4' | 1.2882 (10) | 0.8003 (14) | 0.7168 (9) | 0.0219 (5) | 0.278 (7) |
O2 | 0.86595 (12) | 0.7908 (2) | 0.34547 (11) | 0.0321 (4) | |
O3 | 0.67662 (11) | 0.79787 (18) | 0.36877 (11) | 0.0236 (3) | |
O4 | 1.00549 (13) | 0.9413 (2) | 1.06166 (11) | 0.0362 (4) | |
O5 | 0.81900 (13) | 0.8872 (2) | 1.05584 (13) | 0.0388 (4) | |
O6 | 0.52676 (11) | 1.28410 (17) | 0.92051 (12) | 0.0234 (3) | |
O7 | 0.62669 (11) | 1.52498 (15) | 0.83580 (11) | 0.0185 (3) | |
O8 | 0.79077 (11) | 1.47895 (16) | 0.71823 (11) | 0.0174 (3) | |
N1 | 1.10768 (16) | 0.7428 (2) | 0.77354 (18) | 0.0272 (4) | |
C5 | 1.23354 (16) | 0.7632 (3) | 0.81295 (17) | 0.0244 (5) | |
H5A | 1.2492 | 0.8466 | 0.8694 | 0.029* | 0.722 (7) |
H5B | 1.2673 | 0.6666 | 0.8485 | 0.029* | 0.722 (7) |
H5C | 1.2489 | 0.8474 | 0.8688 | 0.029* | 0.278 (7) |
H5D | 1.2669 | 0.6670 | 0.8495 | 0.029* | 0.278 (7) |
C6 | 1.04161 (16) | 0.8907 (2) | 0.75745 (16) | 0.0186 (4) | |
H6 | 1.0923 | 0.9741 | 0.7336 | 0.022* | |
C7 | 0.93416 (15) | 0.8704 (2) | 0.65914 (16) | 0.0164 (4) | |
C8 | 0.95707 (17) | 0.8448 (3) | 0.54918 (16) | 0.0216 (4) | |
H8 | 1.0349 | 0.8434 | 0.5385 | 0.026* | |
C9 | 0.86540 (16) | 0.8223 (2) | 0.45889 (16) | 0.0211 (4) | |
C10 | 0.74725 (18) | 0.8030 (3) | 0.28551 (17) | 0.0291 (5) | |
H10A | 0.7269 | 0.7138 | 0.2304 | 0.035* | |
H10B | 0.7343 | 0.9040 | 0.2419 | 0.035* | |
C11 | 0.75225 (16) | 0.8251 (2) | 0.47291 (16) | 0.0182 (4) | |
C12 | 0.72683 (16) | 0.8476 (2) | 0.57774 (16) | 0.0168 (4) | |
H12 | 0.6483 | 0.8477 | 0.5863 | 0.020* | |
C13 | 0.81992 (16) | 0.8708 (2) | 0.67332 (16) | 0.0159 (4) | |
C14 | 0.78895 (16) | 0.8993 (2) | 0.78943 (16) | 0.0164 (4) | |
H14 | 0.7264 | 0.8221 | 0.7974 | 0.020* | |
C15 | 0.89755 (16) | 0.8617 (2) | 0.88232 (16) | 0.0191 (4) | |
H15 | 0.9140 | 0.7457 | 0.8766 | 0.023* | |
C16 | 0.89706 (19) | 0.8959 (3) | 1.00600 (18) | 0.0283 (5) | |
C17 | 1.08442 (18) | 0.9333 (3) | 0.98287 (17) | 0.0280 (5) | |
H17A | 1.1261 | 0.8302 | 0.9899 | 0.034* | |
H17B | 1.1424 | 1.0205 | 0.9980 | 0.034* | |
C18 | 1.00434 (16) | 0.9508 (3) | 0.86503 (16) | 0.0200 (4) | |
H18 | 0.9831 | 1.0657 | 0.8531 | 0.024* | |
C19 | 0.74248 (16) | 1.0657 (2) | 0.79825 (15) | 0.0147 (4) | |
C20 | 0.78823 (15) | 1.1934 (2) | 0.74867 (16) | 0.0151 (4) | |
H20 | 0.8466 | 1.1755 | 0.7060 | 0.018* | |
C21 | 0.74977 (15) | 1.3459 (2) | 0.76073 (15) | 0.0148 (4) | |
C22 | 0.66214 (15) | 1.3726 (2) | 0.81994 (16) | 0.0151 (4) | |
C23 | 0.61405 (15) | 1.2451 (2) | 0.86715 (16) | 0.0166 (4) | |
C24 | 0.65474 (16) | 1.0917 (2) | 0.85763 (16) | 0.0164 (4) | |
H24 | 0.6227 | 1.0050 | 0.8916 | 0.020* | |
C25 | 0.88269 (16) | 1.4550 (2) | 0.65900 (16) | 0.0182 (4) | |
H25A | 0.9504 | 1.4086 | 0.7120 | 0.027* | |
H25B | 0.9048 | 1.5573 | 0.6304 | 0.027* | |
H25C | 0.8561 | 1.3827 | 0.5938 | 0.027* | |
C26 | 0.54369 (17) | 1.5820 (3) | 0.73793 (18) | 0.0254 (5) | |
H26A | 0.5794 | 1.5843 | 0.6708 | 0.038* | |
H26B | 0.5190 | 1.6896 | 0.7536 | 0.038* | |
H26C | 0.4757 | 1.5113 | 0.7222 | 0.038* | |
C27 | 0.47759 (17) | 1.1602 (3) | 0.97667 (17) | 0.0227 (5) | |
H27A | 0.4453 | 1.0777 | 0.9204 | 0.034* | |
H27B | 0.4153 | 1.2039 | 1.0104 | 0.034* | |
H27C | 0.5384 | 1.1139 | 1.0378 | 0.034* | |
H1 | 1.086 (2) | 0.676 (4) | 0.803 (2) | 0.056 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0233 (16) | 0.0261 (14) | 0.0294 (18) | 0.0016 (11) | 0.0081 (13) | −0.0019 (12) |
C1 | 0.0237 (17) | 0.0275 (18) | 0.0266 (19) | 0.0037 (14) | 0.0063 (15) | 0.0045 (16) |
C2 | 0.021 (2) | 0.031 (3) | 0.023 (2) | 0.003 (2) | 0.0028 (15) | 0.004 (2) |
C3 | 0.0174 (17) | 0.029 (2) | 0.020 (2) | 0.0030 (17) | 0.0016 (14) | 0.0017 (17) |
C4 | 0.0147 (9) | 0.0226 (12) | 0.0261 (11) | 0.0049 (9) | −0.0004 (8) | −0.0031 (9) |
O1' | 0.027 (3) | 0.037 (5) | 0.022 (4) | 0.004 (3) | 0.002 (3) | −0.005 (3) |
C1' | 0.030 (5) | 0.040 (6) | 0.024 (4) | 0.010 (5) | 0.002 (4) | 0.009 (4) |
C2' | 0.037 (7) | 0.044 (8) | 0.022 (6) | 0.004 (5) | 0.010 (5) | 0.008 (6) |
C3' | 0.031 (5) | 0.019 (5) | 0.031 (6) | 0.009 (4) | 0.007 (5) | 0.003 (4) |
C4' | 0.0147 (9) | 0.0226 (12) | 0.0261 (11) | 0.0049 (9) | −0.0004 (8) | −0.0031 (9) |
O2 | 0.0278 (8) | 0.0550 (11) | 0.0151 (7) | −0.0014 (8) | 0.0079 (6) | −0.0012 (7) |
O3 | 0.0236 (7) | 0.0315 (9) | 0.0156 (7) | −0.0025 (7) | 0.0038 (6) | −0.0010 (6) |
O4 | 0.0300 (8) | 0.0597 (12) | 0.0172 (7) | 0.0130 (8) | 0.0012 (7) | −0.0025 (8) |
O5 | 0.0378 (9) | 0.0615 (12) | 0.0202 (8) | 0.0147 (8) | 0.0132 (7) | 0.0081 (8) |
O6 | 0.0262 (7) | 0.0208 (8) | 0.0295 (8) | 0.0029 (6) | 0.0195 (6) | 0.0037 (6) |
O7 | 0.0215 (7) | 0.0163 (7) | 0.0186 (7) | 0.0047 (6) | 0.0065 (6) | 0.0007 (6) |
O8 | 0.0189 (7) | 0.0149 (7) | 0.0210 (7) | 0.0012 (5) | 0.0102 (6) | 0.0022 (6) |
N1 | 0.0166 (9) | 0.0188 (10) | 0.0440 (12) | 0.0032 (8) | 0.0019 (8) | 0.0030 (9) |
C5 | 0.0178 (10) | 0.0288 (13) | 0.0250 (11) | 0.0052 (9) | 0.0011 (8) | −0.0034 (9) |
C6 | 0.0180 (9) | 0.0163 (10) | 0.0228 (10) | 0.0021 (8) | 0.0069 (8) | 0.0021 (8) |
C7 | 0.0190 (9) | 0.0124 (9) | 0.0187 (10) | 0.0009 (8) | 0.0062 (8) | 0.0028 (8) |
C8 | 0.0188 (9) | 0.0261 (12) | 0.0223 (10) | 0.0008 (9) | 0.0095 (8) | 0.0043 (9) |
C9 | 0.0269 (11) | 0.0237 (11) | 0.0154 (10) | 0.0002 (9) | 0.0107 (8) | 0.0026 (9) |
C10 | 0.0290 (11) | 0.0415 (14) | 0.0175 (10) | 0.0022 (11) | 0.0067 (9) | −0.0018 (10) |
C11 | 0.0208 (10) | 0.0160 (10) | 0.0174 (9) | −0.0011 (8) | 0.0031 (8) | 0.0010 (8) |
C12 | 0.0170 (9) | 0.0144 (10) | 0.0198 (10) | −0.0001 (8) | 0.0062 (8) | 0.0006 (8) |
C13 | 0.0211 (9) | 0.0107 (9) | 0.0171 (9) | 0.0019 (8) | 0.0070 (8) | 0.0019 (8) |
C14 | 0.0181 (9) | 0.0157 (10) | 0.0170 (9) | 0.0003 (8) | 0.0070 (7) | 0.0009 (8) |
C15 | 0.0233 (10) | 0.0188 (10) | 0.0157 (9) | 0.0058 (9) | 0.0058 (8) | 0.0035 (8) |
C16 | 0.0304 (11) | 0.0353 (13) | 0.0189 (10) | 0.0121 (11) | 0.0050 (9) | 0.0056 (10) |
C17 | 0.0235 (11) | 0.0377 (13) | 0.0217 (10) | 0.0083 (10) | 0.0027 (9) | −0.0007 (10) |
C18 | 0.0201 (10) | 0.0217 (11) | 0.0173 (9) | 0.0040 (9) | 0.0016 (8) | 0.0019 (9) |
C19 | 0.0152 (9) | 0.0163 (10) | 0.0122 (9) | 0.0011 (8) | 0.0020 (7) | −0.0005 (8) |
C20 | 0.0132 (8) | 0.0187 (10) | 0.0139 (9) | 0.0017 (8) | 0.0042 (7) | 0.0000 (7) |
C21 | 0.0143 (8) | 0.0178 (10) | 0.0119 (9) | −0.0009 (8) | 0.0017 (7) | 0.0029 (8) |
C22 | 0.0167 (9) | 0.0144 (9) | 0.0145 (9) | 0.0035 (8) | 0.0039 (7) | −0.0002 (8) |
C23 | 0.0161 (9) | 0.0207 (11) | 0.0150 (9) | 0.0015 (8) | 0.0073 (7) | 0.0005 (8) |
C24 | 0.0179 (10) | 0.0165 (10) | 0.0155 (9) | −0.0018 (8) | 0.0054 (8) | 0.0016 (8) |
C25 | 0.0186 (9) | 0.0177 (10) | 0.0212 (10) | −0.0037 (8) | 0.0103 (8) | 0.0001 (9) |
C26 | 0.0224 (11) | 0.0200 (11) | 0.0323 (12) | 0.0059 (9) | 0.0030 (9) | 0.0037 (9) |
C27 | 0.0225 (11) | 0.0262 (12) | 0.0232 (11) | −0.0024 (9) | 0.0129 (9) | 0.0033 (9) |
O1—C1 | 1.370 (4) | C6—H6 | 1.0000 |
O1—C4 | 1.388 (5) | C7—C13 | 1.388 (2) |
C1—C2 | 1.334 (5) | C7—C8 | 1.407 (2) |
C1—H1A | 0.9500 | C8—C9 | 1.356 (3) |
C2—C3 | 1.432 (6) | C8—H8 | 0.9500 |
C2—H2 | 0.9500 | C9—C11 | 1.375 (2) |
C3—C4 | 1.346 (5) | C10—H10A | 0.9900 |
C3—H3 | 0.9500 | C10—H10B | 0.9900 |
C4—C5 | 1.502 (4) | C11—C12 | 1.357 (3) |
O1'—C1' | 1.360 (8) | C12—C13 | 1.406 (2) |
O1'—C4' | 1.374 (9) | C12—H12 | 0.9500 |
C1'—C2' | 1.324 (9) | C13—C14 | 1.521 (2) |
C1'—H1' | 0.9500 | C14—C19 | 1.514 (3) |
C2'—C3' | 1.461 (9) | C14—C15 | 1.525 (3) |
C2'—H2' | 0.9500 | C14—H14 | 1.0000 |
C3'—C4' | 1.297 (9) | C15—C16 | 1.499 (3) |
C3'—H3' | 0.9500 | C15—C18 | 1.512 (3) |
C4'—C5 | 1.461 (9) | C15—H15 | 1.0000 |
O2—C9 | 1.375 (2) | C17—C18 | 1.513 (3) |
O2—C10 | 1.422 (2) | C17—H17A | 0.9900 |
O3—C11 | 1.374 (2) | C17—H17B | 0.9900 |
O3—C10 | 1.424 (2) | C18—H18 | 1.0000 |
O4—C16 | 1.354 (3) | C19—C24 | 1.388 (3) |
O4—C17 | 1.456 (2) | C19—C20 | 1.389 (3) |
O5—C16 | 1.198 (2) | C20—C21 | 1.377 (3) |
O6—C23 | 1.358 (2) | C20—H20 | 0.9500 |
O6—C27 | 1.426 (2) | C21—C22 | 1.386 (2) |
O7—C22 | 1.373 (2) | C22—C23 | 1.387 (3) |
O7—C26 | 1.426 (2) | C23—C24 | 1.389 (3) |
O8—C21 | 1.358 (2) | C24—H24 | 0.9500 |
O8—C25 | 1.426 (2) | C25—H25A | 0.9800 |
N1—C6 | 1.456 (3) | C25—H25B | 0.9800 |
N1—C5 | 1.458 (2) | C25—H25C | 0.9800 |
N1—H1 | 0.74 (3) | C26—H26A | 0.9800 |
C5—H5A | 0.9601 | C26—H26B | 0.9800 |
C5—H5B | 0.9600 | C26—H26C | 0.9800 |
C5—H5C | 0.9600 | C27—H27A | 0.9800 |
C5—H5D | 0.9600 | C27—H27B | 0.9800 |
C6—C18 | 1.525 (3) | C27—H27C | 0.9800 |
C6—C7 | 1.529 (3) | ||
C1—O1—C4 | 106.4 (3) | H10A—C10—H10B | 108.5 |
C2—C1—O1 | 110.8 (3) | C12—C11—O3 | 128.41 (17) |
C2—C1—H1A | 124.6 | C12—C11—C9 | 121.80 (18) |
O1—C1—H1A | 124.6 | O3—C11—C9 | 109.76 (16) |
C1—C2—C3 | 106.4 (4) | C11—C12—C13 | 118.20 (17) |
C1—C2—H2 | 126.8 | C11—C12—H12 | 120.9 |
C3—C2—H2 | 126.8 | C13—C12—H12 | 120.9 |
C4—C3—C2 | 107.3 (3) | C7—C13—C12 | 120.12 (17) |
C4—C3—H3 | 126.3 | C7—C13—C14 | 122.71 (17) |
C2—C3—H3 | 126.3 | C12—C13—C14 | 117.16 (16) |
C3—C4—O1 | 109.1 (3) | C19—C14—C13 | 111.73 (15) |
C3—C4—C5 | 135.6 (4) | C19—C14—C15 | 113.45 (16) |
O1—C4—C5 | 115.3 (4) | C13—C14—C15 | 107.20 (15) |
C1'—O1'—C4' | 102.4 (6) | C19—C14—H14 | 108.1 |
C2'—C1'—O1' | 113.2 (8) | C13—C14—H14 | 108.1 |
C2'—C1'—H1' | 123.4 | C15—C14—H14 | 108.1 |
O1'—C1'—H1' | 123.4 | C16—C15—C18 | 102.73 (17) |
C1'—C2'—C3' | 105.3 (7) | C16—C15—C14 | 119.19 (16) |
C1'—C2'—H2' | 127.3 | C18—C15—C14 | 112.65 (16) |
C3'—C2'—H2' | 127.3 | C16—C15—H15 | 107.2 |
C4'—C3'—C2' | 104.3 (7) | C18—C15—H15 | 107.2 |
C4'—C3'—H3' | 127.9 | C14—C15—H15 | 107.2 |
C2'—C3'—H3' | 127.9 | O5—C16—O4 | 120.97 (19) |
C3'—C4'—O1' | 114.9 (8) | O5—C16—C15 | 129.9 (2) |
C3'—C4'—C5 | 133.9 (10) | O4—C16—C15 | 109.12 (17) |
O1'—C4'—C5 | 111.2 (8) | O4—C17—C18 | 103.72 (15) |
C9—O2—C10 | 105.20 (15) | O4—C17—H17A | 111.0 |
C11—O3—C10 | 105.14 (14) | C18—C17—H17A | 111.0 |
C16—O4—C17 | 109.59 (16) | O4—C17—H17B | 111.0 |
C23—O6—C27 | 117.80 (15) | C18—C17—H17B | 111.0 |
C22—O7—C26 | 112.03 (15) | H17A—C17—H17B | 109.0 |
C21—O8—C25 | 115.83 (14) | C15—C18—C17 | 101.01 (16) |
C6—N1—C5 | 114.47 (17) | C15—C18—C6 | 110.41 (17) |
C6—N1—H1 | 119 (2) | C17—C18—C6 | 120.64 (16) |
C5—N1—H1 | 112 (2) | C15—C18—H18 | 108.0 |
N1—C5—C4' | 111.2 (5) | C17—C18—H18 | 108.0 |
N1—C5—C4 | 110.5 (2) | C6—C18—H18 | 108.0 |
N1—C5—H5A | 109.6 | C24—C19—C20 | 119.56 (17) |
C4'—C5—H5A | 109.9 | C24—C19—C14 | 119.99 (16) |
C4—C5—H5A | 109.4 | C20—C19—C14 | 120.45 (16) |
N1—C5—H5B | 109.4 | C21—C20—C19 | 120.65 (17) |
C4'—C5—H5B | 108.4 | C21—C20—H20 | 119.7 |
C4—C5—H5B | 109.7 | C19—C20—H20 | 119.7 |
H5A—C5—H5B | 108.3 | O8—C21—C20 | 125.24 (16) |
N1—C5—H5C | 109.4 | O8—C21—C22 | 114.73 (17) |
C4'—C5—H5C | 109.6 | C20—C21—C22 | 120.03 (17) |
C4—C5—H5C | 109.0 | O7—C22—C21 | 120.13 (17) |
H5B—C5—H5C | 108.8 | O7—C22—C23 | 120.24 (16) |
N1—C5—H5D | 109.3 | C21—C22—C23 | 119.57 (17) |
C4'—C5—H5D | 109.2 | O6—C23—C22 | 114.70 (17) |
C4—C5—H5D | 110.5 | O6—C23—C24 | 124.80 (17) |
H5A—C5—H5D | 107.6 | C22—C23—C24 | 120.50 (16) |
H5C—C5—H5D | 108.2 | C19—C24—C23 | 119.65 (17) |
N1—C6—C18 | 114.55 (17) | C19—C24—H24 | 120.2 |
N1—C6—C7 | 109.34 (16) | C23—C24—H24 | 120.2 |
C18—C6—C7 | 109.71 (14) | O8—C25—H25A | 109.5 |
N1—C6—H6 | 107.7 | O8—C25—H25B | 109.5 |
C18—C6—H6 | 107.7 | H25A—C25—H25B | 109.5 |
C7—C6—H6 | 107.7 | O8—C25—H25C | 109.5 |
C13—C7—C8 | 120.00 (17) | H25A—C25—H25C | 109.5 |
C13—C7—C6 | 124.32 (16) | H25B—C25—H25C | 109.5 |
C8—C7—C6 | 115.65 (16) | O7—C26—H26A | 109.5 |
C9—C8—C7 | 118.42 (17) | O7—C26—H26B | 109.5 |
C9—C8—H8 | 120.8 | H26A—C26—H26B | 109.5 |
C7—C8—H8 | 120.8 | O7—C26—H26C | 109.5 |
C8—C9—C11 | 121.44 (18) | H26A—C26—H26C | 109.5 |
C8—C9—O2 | 128.97 (17) | H26B—C26—H26C | 109.5 |
C11—C9—O2 | 109.57 (17) | O6—C27—H27A | 109.5 |
O2—C10—O3 | 107.78 (15) | O6—C27—H27B | 109.5 |
O2—C10—H10A | 110.2 | H27A—C27—H27B | 109.5 |
O3—C10—H10A | 110.2 | O6—C27—H27C | 109.5 |
O2—C10—H10B | 110.2 | H27A—C27—H27C | 109.5 |
O3—C10—H10B | 110.2 | H27B—C27—H27C | 109.5 |
C4—O1—C1—C2 | −0.1 (2) | C7—C13—C14—C19 | 103.5 (2) |
O1—C1—C2—C3 | 0.0 (2) | C12—C13—C14—C19 | −75.1 (2) |
C1—C2—C3—C4 | 0.1 (3) | C7—C13—C14—C15 | −21.3 (2) |
C2—C3—C4—O1 | −0.2 (4) | C12—C13—C14—C15 | 160.05 (17) |
C2—C3—C4—C5 | −177.2 (5) | C19—C14—C15—C16 | 49.7 (2) |
C1—O1—C4—C3 | 0.2 (3) | C13—C14—C15—C16 | 173.51 (18) |
C1—O1—C4—C5 | 177.9 (3) | C19—C14—C15—C18 | −70.7 (2) |
C4'—O1'—C1'—C2' | 0.0 (3) | C13—C14—C15—C18 | 53.1 (2) |
O1'—C1'—C2'—C3' | 0.0 (3) | C17—O4—C16—O5 | 176.9 (2) |
C1'—C2'—C3'—C4' | 0.0 (5) | C17—O4—C16—C15 | −2.7 (2) |
C2'—C3'—C4'—O1' | 0.0 (7) | C18—C15—C16—O5 | 160.0 (2) |
C2'—C3'—C4'—C5 | −176.7 (12) | C14—C15—C16—O5 | 34.7 (4) |
C1'—O1'—C4'—C3' | 0.0 (6) | C18—C15—C16—O4 | −20.5 (2) |
C1'—O1'—C4'—C5 | 177.4 (9) | C14—C15—C16—O4 | −145.80 (18) |
C6—N1—C5—C4' | −81.7 (5) | C16—O4—C17—C18 | 24.8 (2) |
C6—N1—C5—C4 | −80.5 (3) | C16—C15—C18—C17 | 33.8 (2) |
C3'—C4'—C5—N1 | 115.8 (10) | C14—C15—C18—C17 | 163.25 (17) |
O1'—C4'—C5—N1 | −61.0 (8) | C16—C15—C18—C6 | 162.55 (16) |
C3'—C4'—C5—C4 | 58 (30) | C14—C15—C18—C6 | −68.0 (2) |
O1'—C4'—C5—C4 | −119 (30) | O4—C17—C18—C15 | −35.8 (2) |
C3—C4—C5—N1 | −47.2 (6) | O4—C17—C18—C6 | −157.70 (18) |
O1—C4—C5—N1 | 136.0 (3) | N1—C6—C18—C15 | −79.7 (2) |
C3—C4—C5—C4' | 75 (30) | C7—C6—C18—C15 | 43.7 (2) |
O1—C4—C5—C4' | −102 (30) | N1—C6—C18—C17 | 37.5 (3) |
C5—N1—C6—C18 | −88.4 (2) | C7—C6—C18—C17 | 160.88 (19) |
C5—N1—C6—C7 | 148.05 (17) | C13—C14—C19—C24 | 144.26 (17) |
N1—C6—C7—C13 | 112.7 (2) | C15—C14—C19—C24 | −94.4 (2) |
C18—C6—C7—C13 | −13.7 (3) | C13—C14—C19—C20 | −36.7 (2) |
N1—C6—C7—C8 | −65.2 (2) | C15—C14—C19—C20 | 84.6 (2) |
C18—C6—C7—C8 | 168.40 (17) | C24—C19—C20—C21 | 1.9 (3) |
C13—C7—C8—C9 | 0.5 (3) | C14—C19—C20—C21 | −177.17 (18) |
C6—C7—C8—C9 | 178.49 (19) | C25—O8—C21—C20 | −1.4 (2) |
C7—C8—C9—C11 | 0.5 (3) | C25—O8—C21—C22 | 178.75 (15) |
C7—C8—C9—O2 | −177.89 (19) | C19—C20—C21—O8 | 178.27 (17) |
C10—O2—C9—C8 | −171.2 (2) | C19—C20—C21—C22 | −1.9 (3) |
C10—O2—C9—C11 | 10.3 (2) | C26—O7—C22—C21 | 83.0 (2) |
C9—O2—C10—O3 | −15.8 (2) | C26—O7—C22—C23 | −99.73 (19) |
C11—O3—C10—O2 | 15.3 (2) | O8—C21—C22—O7 | −2.6 (2) |
C10—O3—C11—C12 | 172.9 (2) | C20—C21—C22—O7 | 177.56 (16) |
C10—O3—C11—C9 | −9.0 (2) | O8—C21—C22—C23 | −179.89 (16) |
C8—C9—C11—C12 | −1.2 (3) | C20—C21—C22—C23 | 0.3 (3) |
O2—C9—C11—C12 | 177.42 (18) | C27—O6—C23—C22 | −176.57 (16) |
C8—C9—C11—O3 | −179.50 (19) | C27—O6—C23—C24 | 3.8 (3) |
O2—C9—C11—O3 | −0.9 (2) | O7—C22—C23—O6 | 4.4 (2) |
O3—C11—C12—C13 | 178.88 (18) | C21—C22—C23—O6 | −178.29 (16) |
C9—C11—C12—C13 | 0.9 (3) | O7—C22—C23—C24 | −175.91 (18) |
C8—C7—C13—C12 | −0.8 (3) | C21—C22—C23—C24 | 1.4 (3) |
C6—C7—C13—C12 | −178.56 (18) | C20—C19—C24—C23 | −0.2 (3) |
C8—C7—C13—C14 | −179.37 (18) | C14—C19—C24—C23 | 178.83 (17) |
C6—C7—C13—C14 | 2.9 (3) | O6—C23—C24—C19 | 178.24 (17) |
C11—C12—C13—C7 | 0.1 (3) | C22—C23—C24—C19 | −1.4 (3) |
C11—C12—C13—C14 | 178.72 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
C25—H25A···O2i | 0.98 | 2.60 | 3.268 (2) | 126 |
C26—H26C···O3ii | 0.98 | 2.60 | 3.544 (3) | 163 |
C27—H27A···O1iii | 0.98 | 2.54 | 3.487 (4) | 164 |
C27—H27B···O7iv | 0.98 | 2.50 | 2.993 (2) | 111 |
Symmetry codes: (i) −x+2, y+1/2, −z+1; (ii) −x+1, y+1/2, −z+1; (iii) x−1, y, z; (iv) −x+1, y−1/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C27H27NO8 |
Mr | 493.50 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 113 |
a, b, c (Å) | 11.7374 (15), 8.4087 (8), 11.8848 (16) |
β (°) | 102.693 (5) |
V (Å3) | 1144.3 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.20 × 0.18 × 0.12 |
Data collection | |
Diffractometer | Rigaku Saturn724 CCD diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2007) |
Tmin, Tmax | 0.979, 0.987 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14991, 2950, 2262 |
Rint | 0.047 |
(sin θ/λ)max (Å−1) | 0.661 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.067, 0.97 |
No. of reflections | 2950 |
No. of parameters | 372 |
No. of restraints | 41 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.17, −0.22 |
Computer programs: CrystalClear (Rigaku, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C25—H25A···O2i | 0.98 | 2.60 | 3.268 (2) | 125.8 |
C26—H26C···O3ii | 0.98 | 2.60 | 3.544 (3) | 163.1 |
C27—H27A···O1iii | 0.98 | 2.54 | 3.487 (4) | 163.5 |
C27—H27B···O7iv | 0.98 | 2.50 | 2.993 (2) | 111.0 |
Symmetry codes: (i) −x+2, y+1/2, −z+1; (ii) −x+1, y+1/2, −z+1; (iii) x−1, y, z; (iv) −x+1, y−1/2, −z+2. |
Acknowledgements
This work was supported by the National Natural Science Foundation of China (No. 30873363), the Program of the Science Foundation of Tianjin (08JCYBJC070000) and the Major Program of the Science Foundation of Tianjin (09ZCKFSH01700).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Podophyllotoxin and its derivatives are well known substances with anti-cancer activity. In recent years, our study has been aimed at synthesizing novel podophyllotoxin compounds with improved bioactivities (Lu et al., 2010; Yu et al., 2008; Zhao et al., 2009). In this paper, we report the crystal structure of title the compound.
In title compound, bond lengths and angles are normal and in good agreement with those reported previously for related compounds (Feng et al., 2008; Zhang, et al., 1994; Zuo, et al., 2009). The tetrahydrofuran ring (C15—C18/O4) and the six-membered ring (C6—C7/C13—C15/C18) fused to it both display envelope conformations. The dihedral angle between the benzene ring (C7—C9/C11—C13) of the benzo[d]-[1,3]dioxole fragment and the other benzene ring (C19—C24) is 60.59 (2)°. In the crystal structure, there are weak C—H···O intermolecular hydrogen interactions linking the molecules into a three-dimensional network (Table 1). The furan ring is disordered over two sets of sites with occupancies of 0.722 (7) and 0.278 (7).