metal-organic compounds
{4,6-Bis[(E)-1-methyl-2-(pyridin-2-ylmethylidene-κN)hydrazinyl-κN2]pyrimidine-κN1}dichloridocopper(II) methanol disolvate monohydrate
aSchool of Chemistry & CRANN, The University of Dublin, Trinity College, Dublin 2, Ireland
*Correspondence e-mail: schmittw@tcd.ie
The title compound, [CuCl2(C18H18N8)]·2CH3OH·H2O, contains a pentacoordinated Cu(II) atom bonded to the tridentate 4,6-bis[(E)-1-methyl-2-(pyridin-2-ylmethylidene)hydrazinyl]pyrimidine ligand and two Cl atoms. The geometry around the CuII atom is distorted square-pyramidal. The molecules pack in the via O—H⋯Cl, O—H⋯N, C—H⋯Cl and C—H⋯O hydrogen bonds, C—H⋯π and π–π interactions [centroid–centroid distances of the pyrimidine–pyridine and pyridine–pyridine interactions are 3.750 (3) and 3.850 (3) Å, respectively], forming sheet-like assemblies.
Related literature
For the coordination chemistry of similar ligand-types, see: Stadler et al. (2005, 2006). For additional geometric analysis, see: Addison et al. (1984).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2008); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997), DIAMOND (Brandenburg, 1998) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536811025414/tk2760sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811025414/tk2760Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811025414/tk2760Isup3.mol
4,6-bis[N-Methyl-2-(pyrindin-2-ylmethylene)hydrazinyl]pyrimidine (0.007 g. 0.025 mmol) was dissolved in 5 ml of chloroform and 4.75 ml of ethanol. Then, 0.25 ml of an ethanolic 0.1 M copper(II) chloride dihydrate solution was added and the mixture was left for slow evaporation. Green blocks of the title compound were collected after 2 days. Yield: ca 75%.
All the hydrogen atoms were positioned geometrically (C—H = 0.95–0.98 Å; O—H = 0.84 Å) and were included in the
in the riding model approximation with Uiso(H)= 1.2Ueq(C) and 1.5Ueq(O). The H atoms of O5 of the water molecule could not be located. The maximum and minimum residual electron density peaks of 1.20 and 0.64 eÅ-3, respectively, were located 0.07 Å and 0.67 Å from the O5 atom, respectively.Data collection: CrystalClear (Rigaku, 2008); cell
CrystalClear (Rigaku, 2008); data reduction: CrystalClear (Rigaku, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997), DIAMOND (Brandenburg, 1998) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound drawn at 50% probability thermal ellipsoids. Solvent molecules are omitted for clarity. | |
Fig. 2. Packing of the CuII complex and constitutional solvent molecules; views in the direction of the crystallographic b- (left) and c-axes. | |
Fig. 3. π–π Stacking between the CuII complexes; view in the direction of the c-axis. |
[CuCl2(C20H18N8)]·2CH4O·H2O | Z = 2 |
Mr = 560.94 | F(000) = 578 |
Triclinic, P1 | Dx = 1.551 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71075 Å |
a = 7.430 (5) Å | Cell parameters from 4091 reflections |
b = 11.627 (8) Å | θ = 1.5–31.2° |
c = 14.026 (9) Å | µ = 1.17 mm−1 |
α = 95.848 (7)° | T = 116 K |
β = 93.477 (13)° | Block, green |
γ = 92.920 (9)° | 0.30 × 0.25 × 0.10 mm |
V = 1201.2 (14) Å3 |
Rigaku Saturn724 diffractometer | 7050 independent reflections |
Radiation source: fine-focus sealed tube | 4093 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.091 |
Detector resolution: 28.5714 pixels mm-1 | θmax = 31.0°, θmin = 2.8° |
ϕ and ω scans | h = −10→10 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2008) | k = −16→16 |
Tmin = 0.786, Tmax = 1.000 | l = −20→20 |
26094 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 0.82 | w = 1/[σ2(Fo2) + (0.0252P)2] where P = (Fo2 + 2Fc2)/3 |
7050 reflections | (Δ/σ)max = 0.001 |
311 parameters | Δρmax = 1.20 e Å−3 |
0 restraints | Δρmin = −0.64 e Å−3 |
[CuCl2(C20H18N8)]·2CH4O·H2O | γ = 92.920 (9)° |
Mr = 560.94 | V = 1201.2 (14) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.430 (5) Å | Mo Kα radiation |
b = 11.627 (8) Å | µ = 1.17 mm−1 |
c = 14.026 (9) Å | T = 116 K |
α = 95.848 (7)° | 0.30 × 0.25 × 0.10 mm |
β = 93.477 (13)° |
Rigaku Saturn724 diffractometer | 7050 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2008) | 4093 reflections with I > 2σ(I) |
Tmin = 0.786, Tmax = 1.000 | Rint = 0.091 |
26094 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 0.82 | Δρmax = 1.20 e Å−3 |
7050 reflections | Δρmin = −0.64 e Å−3 |
311 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.51669 (5) | 0.23008 (3) | 0.67322 (2) | 0.02337 (11) | |
Cl1 | 0.60610 (11) | 0.40752 (6) | 0.74048 (5) | 0.03137 (19) | |
Cl2 | 0.80299 (10) | 0.12043 (6) | 0.67078 (5) | 0.02719 (17) | |
N8 | −0.0738 (3) | −0.3088 (2) | 0.95926 (17) | 0.0257 (6) | |
N7 | 0.1465 (3) | −0.1045 (2) | 0.99451 (17) | 0.0224 (5) | |
N6 | 0.2460 (3) | −0.00054 (19) | 1.01525 (16) | 0.0212 (5) | |
N5 | 0.4077 (3) | 0.15083 (19) | 0.95650 (16) | 0.0218 (5) | |
N4 | 0.4243 (3) | 0.16279 (19) | 0.78868 (16) | 0.0212 (5) | |
N1 | 0.5074 (3) | 0.2629 (2) | 0.53308 (16) | 0.0235 (5) | |
N2 | 0.3547 (3) | 0.09759 (19) | 0.61299 (16) | 0.0210 (5) | |
N3 | 0.2856 (3) | 0.02344 (19) | 0.67263 (17) | 0.0236 (5) | |
C1 | −0.0123 (4) | −0.2672 (2) | 1.0503 (2) | 0.0222 (6) | |
C2 | −0.1852 (4) | −0.4043 (2) | 0.9493 (2) | 0.0298 (7) | |
H2 | −0.2286 | −0.4348 | 0.8862 | 0.036* | |
C3 | −0.2412 (4) | −0.4615 (3) | 1.0258 (2) | 0.0306 (7) | |
H3 | −0.3217 | −0.5284 | 1.0149 | 0.037* | |
C4 | −0.1776 (4) | −0.4193 (3) | 1.1175 (2) | 0.0308 (7) | |
H4 | −0.2136 | −0.4565 | 1.1711 | 0.037* | |
C5 | −0.0597 (4) | −0.3212 (2) | 1.1308 (2) | 0.0264 (7) | |
H5 | −0.0122 | −0.2915 | 1.1933 | 0.032* | |
C15 | 0.5832 (4) | 0.3533 (3) | 0.4945 (2) | 0.0284 (7) | |
H15 | 0.6540 | 0.4107 | 0.5356 | 0.034* | |
C16 | 0.3030 (4) | 0.0512 (2) | 0.9371 (2) | 0.0205 (6) | |
C17 | 0.2558 (4) | 0.0018 (2) | 0.84227 (19) | 0.0205 (6) | |
H17 | 0.1839 | −0.0686 | 0.8288 | 0.025* | |
C18 | 0.4602 (4) | 0.2000 (2) | 0.8816 (2) | 0.0224 (6) | |
H18 | 0.5322 | 0.2704 | 0.8951 | 0.027* | |
C19 | 0.3201 (4) | 0.0616 (2) | 0.7704 (2) | 0.0211 (6) | |
C20 | 0.2746 (4) | 0.0561 (2) | 1.11368 (19) | 0.0246 (6) | |
H20A | 0.3352 | 0.1328 | 1.1128 | 0.037* | |
H20B | 0.3500 | 0.0091 | 1.1522 | 0.037* | |
H20C | 0.1578 | 0.0644 | 1.1418 | 0.037* | |
C28 | 0.5623 (4) | 0.3661 (3) | 0.3978 (2) | 0.0312 (7) | |
H28 | 0.6165 | 0.4318 | 0.3733 | 0.037* | |
C29 | 0.4617 (4) | 0.2825 (3) | 0.3368 (2) | 0.0321 (7) | |
H29 | 0.4466 | 0.2899 | 0.2700 | 0.039* | |
C30 | 0.3827 (4) | 0.1872 (3) | 0.3747 (2) | 0.0299 (7) | |
H30 | 0.3135 | 0.1282 | 0.3344 | 0.036* | |
C31 | 0.4081 (4) | 0.1808 (3) | 0.4734 (2) | 0.0252 (7) | |
C32 | 0.3240 (4) | 0.0875 (2) | 0.5211 (2) | 0.0237 (6) | |
H32 | 0.2526 | 0.0247 | 0.4869 | 0.028* | |
C33 | 0.1001 (3) | −0.1588 (2) | 1.0661 (2) | 0.0212 (6) | |
H33 | 0.1396 | −0.1281 | 1.1297 | 0.025* | |
C36 | 0.1671 (4) | −0.0758 (2) | 0.6330 (2) | 0.0250 (6) | |
H36A | 0.0583 | −0.0487 | 0.6013 | 0.037* | |
H36B | 0.1328 | −0.1212 | 0.6849 | 0.037* | |
H36C | 0.2304 | −0.1243 | 0.5861 | 0.037* | |
O1 | 0.0092 (3) | 0.26564 (19) | 0.52994 (16) | 0.0421 (6) | |
H1 | −0.0750 | 0.2342 | 0.5572 | 0.063* | |
C37 | 0.0780 (4) | 0.3696 (3) | 0.5842 (3) | 0.0458 (9) | |
H37A | −0.0173 | 0.4030 | 0.6217 | 0.069* | |
H37B | 0.1195 | 0.4247 | 0.5407 | 0.069* | |
H37C | 0.1794 | 0.3531 | 0.6277 | 0.069* | |
O3 | −0.0217 (4) | 0.24581 (19) | 0.21711 (17) | 0.0615 (8) | |
H3A | 0.0257 | 0.2578 | 0.1659 | 0.092* | |
C38 | −0.0030 (4) | 0.3467 (3) | 0.2806 (2) | 0.0374 (8) | |
H38A | −0.0155 | 0.3271 | 0.3462 | 0.056* | |
H38B | −0.0968 | 0.3988 | 0.2638 | 0.056* | |
H38C | 0.1163 | 0.3850 | 0.2762 | 0.056* | |
O5 | 0.6024 (5) | 0.2970 (3) | 0.1203 (2) | 0.0990 (11) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0281 (2) | 0.0221 (2) | 0.01938 (19) | −0.00223 (15) | 0.00150 (15) | 0.00127 (14) |
Cl1 | 0.0424 (5) | 0.0232 (4) | 0.0269 (4) | −0.0065 (3) | −0.0001 (3) | 0.0000 (3) |
Cl2 | 0.0285 (4) | 0.0287 (4) | 0.0238 (4) | 0.0021 (3) | 0.0010 (3) | −0.0002 (3) |
N8 | 0.0256 (14) | 0.0267 (14) | 0.0242 (13) | 0.0000 (11) | 0.0023 (11) | −0.0005 (11) |
N7 | 0.0199 (13) | 0.0239 (13) | 0.0233 (13) | 0.0009 (10) | 0.0029 (10) | 0.0013 (10) |
N6 | 0.0232 (13) | 0.0205 (12) | 0.0195 (12) | 0.0000 (10) | 0.0023 (10) | 0.0004 (10) |
N5 | 0.0210 (13) | 0.0221 (13) | 0.0217 (13) | −0.0005 (10) | 0.0017 (10) | 0.0003 (10) |
N4 | 0.0203 (13) | 0.0211 (12) | 0.0221 (12) | −0.0015 (10) | 0.0025 (10) | 0.0022 (10) |
N1 | 0.0230 (14) | 0.0268 (13) | 0.0212 (13) | −0.0004 (11) | 0.0023 (10) | 0.0049 (11) |
N2 | 0.0217 (13) | 0.0192 (12) | 0.0212 (12) | −0.0018 (10) | 0.0035 (10) | −0.0013 (10) |
N3 | 0.0284 (15) | 0.0221 (13) | 0.0190 (12) | −0.0042 (11) | 0.0017 (10) | −0.0012 (10) |
C1 | 0.0205 (16) | 0.0222 (15) | 0.0239 (15) | 0.0029 (12) | 0.0034 (12) | 0.0000 (12) |
C2 | 0.0251 (18) | 0.0288 (17) | 0.0336 (18) | −0.0020 (14) | −0.0005 (14) | −0.0023 (14) |
C3 | 0.0274 (18) | 0.0231 (16) | 0.041 (2) | −0.0029 (13) | 0.0035 (15) | 0.0037 (14) |
C4 | 0.0292 (18) | 0.0286 (17) | 0.0364 (19) | −0.0004 (14) | 0.0059 (14) | 0.0110 (15) |
C5 | 0.0236 (17) | 0.0302 (17) | 0.0252 (16) | 0.0008 (13) | 0.0005 (13) | 0.0032 (13) |
C15 | 0.0281 (18) | 0.0277 (17) | 0.0289 (17) | −0.0002 (13) | 0.0033 (14) | 0.0002 (14) |
C16 | 0.0185 (15) | 0.0218 (14) | 0.0212 (14) | 0.0030 (12) | 0.0022 (12) | 0.0008 (12) |
C17 | 0.0172 (15) | 0.0222 (14) | 0.0215 (15) | −0.0027 (11) | 0.0010 (11) | 0.0009 (12) |
C18 | 0.0205 (16) | 0.0185 (14) | 0.0264 (15) | −0.0025 (12) | −0.0007 (12) | −0.0031 (12) |
C19 | 0.0201 (15) | 0.0223 (15) | 0.0204 (14) | 0.0032 (12) | 0.0004 (12) | −0.0016 (12) |
C20 | 0.0304 (17) | 0.0228 (15) | 0.0199 (15) | −0.0025 (13) | 0.0017 (12) | 0.0006 (12) |
C28 | 0.0331 (19) | 0.0321 (18) | 0.0295 (17) | 0.0005 (14) | 0.0053 (14) | 0.0082 (14) |
C29 | 0.038 (2) | 0.0390 (19) | 0.0200 (15) | −0.0006 (15) | 0.0019 (14) | 0.0062 (14) |
C30 | 0.0351 (19) | 0.0316 (17) | 0.0219 (16) | −0.0001 (14) | 0.0016 (14) | −0.0008 (13) |
C31 | 0.0239 (16) | 0.0298 (16) | 0.0230 (15) | 0.0041 (13) | 0.0052 (12) | 0.0047 (13) |
C32 | 0.0229 (16) | 0.0246 (15) | 0.0227 (15) | −0.0020 (12) | −0.0004 (12) | 0.0004 (12) |
C33 | 0.0181 (15) | 0.0238 (15) | 0.0207 (14) | −0.0008 (12) | −0.0001 (12) | −0.0002 (12) |
C36 | 0.0264 (17) | 0.0249 (15) | 0.0220 (15) | −0.0066 (13) | −0.0002 (12) | −0.0004 (12) |
O1 | 0.0430 (15) | 0.0446 (15) | 0.0378 (14) | −0.0067 (12) | 0.0104 (11) | −0.0002 (12) |
C37 | 0.038 (2) | 0.043 (2) | 0.054 (2) | −0.0052 (17) | −0.0018 (18) | 0.0018 (19) |
O3 | 0.112 (2) | 0.0336 (14) | 0.0366 (15) | −0.0247 (15) | 0.0352 (15) | −0.0096 (12) |
C38 | 0.043 (2) | 0.040 (2) | 0.0297 (18) | 0.0002 (16) | 0.0058 (15) | 0.0024 (15) |
O5 | 0.115 (3) | 0.101 (3) | 0.079 (3) | −0.008 (2) | 0.018 (2) | −0.001 (2) |
Cu1—Cl1 | 2.2306 (15) | C15—H15 | 0.9500 |
Cu1—Cl2 | 2.5353 (16) | C16—C17 | 1.410 (4) |
Cu1—N1 | 2.038 (3) | C17—C19 | 1.377 (4) |
Cu1—N2 | 1.989 (2) | C17—H17 | 0.9500 |
Cu1—N4 | 2.011 (2) | C18—H18 | 0.9500 |
N8—C2 | 1.342 (3) | C20—H20A | 0.9800 |
N8—C1 | 1.362 (4) | C20—H20B | 0.9800 |
N7—C33 | 1.294 (3) | C20—H20C | 0.9800 |
N7—N6 | 1.380 (3) | C28—C29 | 1.384 (4) |
N6—C16 | 1.381 (3) | C28—H28 | 0.9500 |
N6—C20 | 1.466 (3) | C29—C30 | 1.395 (4) |
N5—C18 | 1.317 (3) | C29—H29 | 0.9500 |
N5—C16 | 1.356 (3) | C30—C31 | 1.397 (4) |
N4—C18 | 1.337 (3) | C30—H30 | 0.9500 |
N4—C19 | 1.368 (3) | C31—C32 | 1.464 (4) |
N1—C15 | 1.344 (3) | C32—H32 | 0.9500 |
N1—C31 | 1.358 (4) | C33—H33 | 0.9500 |
N2—C32 | 1.288 (3) | C36—H36A | 0.9800 |
N2—N3 | 1.364 (3) | C36—H36B | 0.9800 |
N3—C19 | 1.402 (3) | C36—H36C | 0.9800 |
N3—C36 | 1.457 (3) | O1—C37 | 1.416 (4) |
C1—C5 | 1.401 (4) | O1—H1 | 0.8400 |
C1—C33 | 1.465 (4) | C37—H37A | 0.9800 |
C2—C3 | 1.392 (4) | C37—H37B | 0.9800 |
C2—H2 | 0.9500 | C37—H37C | 0.9800 |
C3—C4 | 1.377 (4) | O3—C38 | 1.394 (4) |
C3—H3 | 0.9500 | O3—H3A | 0.8399 |
C4—C5 | 1.391 (4) | C38—H38A | 0.9800 |
C4—H4 | 0.9500 | C38—H38B | 0.9800 |
C5—H5 | 0.9500 | C38—H38C | 0.9800 |
C15—C28 | 1.381 (4) | ||
N2—Cu1—N4 | 78.01 (10) | C16—C17—H17 | 122.0 |
N2—Cu1—N1 | 79.32 (10) | N5—C18—N4 | 127.7 (3) |
N4—Cu1—N1 | 155.14 (9) | N5—C18—H18 | 116.1 |
N2—Cu1—Cl1 | 159.91 (7) | N4—C18—H18 | 116.1 |
N4—Cu1—Cl1 | 99.43 (8) | N4—C19—C17 | 122.7 (3) |
N1—Cu1—Cl1 | 98.34 (8) | N4—C19—N3 | 114.5 (2) |
N2—Cu1—Cl2 | 95.54 (8) | C17—C19—N3 | 122.8 (3) |
N4—Cu1—Cl2 | 95.41 (7) | N6—C20—H20A | 109.5 |
N1—Cu1—Cl2 | 96.80 (7) | N6—C20—H20B | 109.5 |
Cl1—Cu1—Cl2 | 104.54 (5) | H20A—C20—H20B | 109.5 |
C2—N8—C1 | 116.9 (3) | N6—C20—H20C | 109.5 |
C33—N7—N6 | 117.5 (2) | H20A—C20—H20C | 109.5 |
C16—N6—N7 | 115.9 (2) | H20B—C20—H20C | 109.5 |
C16—N6—C20 | 122.2 (2) | C15—C28—C29 | 119.4 (3) |
N7—N6—C20 | 121.7 (2) | C15—C28—H28 | 120.3 |
C18—N5—C16 | 116.1 (2) | C29—C28—H28 | 120.3 |
C18—N4—C19 | 115.4 (2) | C28—C29—C30 | 119.2 (3) |
C18—N4—Cu1 | 128.5 (2) | C28—C29—H29 | 120.4 |
C19—N4—Cu1 | 115.97 (18) | C30—C29—H29 | 120.4 |
C15—N1—C31 | 118.0 (3) | C29—C30—C31 | 118.1 (3) |
C15—N1—Cu1 | 128.7 (2) | C29—C30—H30 | 120.9 |
C31—N1—Cu1 | 113.24 (18) | C31—C30—H30 | 120.9 |
C32—N2—N3 | 124.9 (2) | N1—C31—C30 | 122.6 (3) |
C32—N2—Cu1 | 118.0 (2) | N1—C31—C32 | 114.9 (3) |
N3—N2—Cu1 | 117.15 (17) | C30—C31—C32 | 122.5 (3) |
N2—N3—C19 | 113.7 (2) | N2—C32—C31 | 114.5 (3) |
N2—N3—C36 | 119.9 (2) | N2—C32—H32 | 122.8 |
C19—N3—C36 | 125.9 (2) | C31—C32—H32 | 122.8 |
N8—C1—C5 | 122.4 (3) | N7—C33—C1 | 120.9 (3) |
N8—C1—C33 | 119.3 (3) | N7—C33—H33 | 119.6 |
C5—C1—C33 | 118.2 (3) | C1—C33—H33 | 119.6 |
N8—C2—C3 | 124.0 (3) | N3—C36—H36A | 109.5 |
N8—C2—H2 | 118.0 | N3—C36—H36B | 109.5 |
C3—C2—H2 | 118.0 | H36A—C36—H36B | 109.5 |
C4—C3—C2 | 118.7 (3) | N3—C36—H36C | 109.5 |
C4—C3—H3 | 120.7 | H36A—C36—H36C | 109.5 |
C2—C3—H3 | 120.7 | H36B—C36—H36C | 109.5 |
C3—C4—C5 | 119.1 (3) | C37—O1—H1 | 110.9 |
C3—C4—H4 | 120.5 | O1—C37—H37A | 109.5 |
C5—C4—H4 | 120.5 | O1—C37—H37B | 109.5 |
C4—C5—C1 | 118.9 (3) | H37A—C37—H37B | 109.5 |
C4—C5—H5 | 120.5 | O1—C37—H37C | 109.5 |
C1—C5—H5 | 120.5 | H37A—C37—H37C | 109.5 |
N1—C15—C28 | 122.7 (3) | H37B—C37—H37C | 109.5 |
N1—C15—H15 | 118.7 | C38—O3—H3A | 109.4 |
C28—C15—H15 | 118.7 | O3—C38—H38A | 109.5 |
N5—C16—N6 | 116.5 (2) | O3—C38—H38B | 109.5 |
N5—C16—C17 | 122.1 (2) | H38A—C38—H38B | 109.5 |
N6—C16—C17 | 121.4 (3) | O3—C38—H38C | 109.5 |
C19—C17—C16 | 116.0 (3) | H38A—C38—H38C | 109.5 |
C19—C17—H17 | 122.0 | H38B—C38—H38C | 109.5 |
C33—N7—N6—C16 | 175.9 (2) | Cu1—N1—C15—C28 | −178.4 (2) |
C33—N7—N6—C20 | −9.5 (4) | C18—N5—C16—N6 | −179.5 (2) |
N2—Cu1—N4—C18 | −178.6 (2) | C18—N5—C16—C17 | 1.2 (4) |
N1—Cu1—N4—C18 | −154.0 (2) | N7—N6—C16—N5 | −177.2 (2) |
Cl1—Cu1—N4—C18 | −18.9 (2) | C20—N6—C16—N5 | 8.3 (4) |
Cl2—Cu1—N4—C18 | 86.9 (2) | N7—N6—C16—C17 | 2.2 (4) |
N2—Cu1—N4—C19 | 5.93 (18) | C20—N6—C16—C17 | −172.4 (2) |
N1—Cu1—N4—C19 | 30.6 (3) | N5—C16—C17—C19 | −0.9 (4) |
Cl1—Cu1—N4—C19 | 165.64 (18) | N6—C16—C17—C19 | 179.8 (2) |
Cl2—Cu1—N4—C19 | −88.61 (19) | C16—N5—C18—N4 | −0.8 (4) |
N2—Cu1—N1—C15 | 176.8 (3) | C19—N4—C18—N5 | 0.2 (4) |
N4—Cu1—N1—C15 | 152.3 (2) | Cu1—N4—C18—N5 | −175.3 (2) |
Cl1—Cu1—N1—C15 | 17.1 (3) | C18—N4—C19—C17 | 0.1 (4) |
Cl2—Cu1—N1—C15 | −88.8 (2) | Cu1—N4—C19—C17 | 176.2 (2) |
N2—Cu1—N1—C31 | −2.32 (19) | C18—N4—C19—N3 | −179.4 (2) |
N4—Cu1—N1—C31 | −26.8 (3) | Cu1—N4—C19—N3 | −3.3 (3) |
Cl1—Cu1—N1—C31 | −162.08 (18) | C16—C17—C19—N4 | 0.3 (4) |
Cl2—Cu1—N1—C31 | 92.1 (2) | C16—C17—C19—N3 | 179.7 (2) |
N4—Cu1—N2—C32 | 172.7 (2) | N2—N3—C19—N4 | −3.2 (3) |
N1—Cu1—N2—C32 | 2.9 (2) | C36—N3—C19—N4 | −174.6 (2) |
Cl1—Cu1—N2—C32 | 88.0 (3) | N2—N3—C19—C17 | 177.3 (2) |
Cl2—Cu1—N2—C32 | −93.0 (2) | C36—N3—C19—C17 | 5.9 (4) |
N4—Cu1—N2—N3 | −7.87 (18) | N1—C15—C28—C29 | −0.9 (5) |
N1—Cu1—N2—N3 | −177.6 (2) | C15—C28—C29—C30 | 0.3 (5) |
Cl1—Cu1—N2—N3 | −92.5 (3) | C28—C29—C30—C31 | 0.4 (5) |
Cl2—Cu1—N2—N3 | 86.50 (18) | C15—N1—C31—C30 | 0.1 (4) |
C32—N2—N3—C19 | −172.1 (3) | Cu1—N1—C31—C30 | 179.3 (2) |
Cu1—N2—N3—C19 | 8.5 (3) | C15—N1—C31—C32 | −177.7 (2) |
C32—N2—N3—C36 | −0.1 (4) | Cu1—N1—C31—C32 | 1.6 (3) |
Cu1—N2—N3—C36 | −179.56 (18) | C29—C30—C31—N1 | −0.6 (5) |
C2—N8—C1—C5 | 0.9 (4) | C29—C30—C31—C32 | 177.0 (3) |
C2—N8—C1—C33 | −176.0 (2) | N3—N2—C32—C31 | 177.7 (2) |
C1—N8—C2—C3 | 0.4 (4) | Cu1—N2—C32—C31 | −2.9 (3) |
N8—C2—C3—C4 | −0.9 (5) | N1—C31—C32—N2 | 0.8 (4) |
C2—C3—C4—C5 | −0.1 (4) | C30—C31—C32—N2 | −176.9 (3) |
C3—C4—C5—C1 | 1.3 (4) | N6—N7—C33—C1 | 177.3 (2) |
N8—C1—C5—C4 | −1.7 (4) | N8—C1—C33—N7 | −2.3 (4) |
C33—C1—C5—C4 | 175.2 (3) | C5—C1—C33—N7 | −179.3 (3) |
C31—N1—C15—C28 | 0.7 (4) |
Cg1 and Cg2 are the centroids of the N4,N5,C16–C19 and N1,C15,C28,C29–C31 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···Cl2i | 0.84 | 2.36 | 3.144 (3) | 155 |
O3—H3a···N8ii | 0.84 | 1.96 | 2.773 (4) | 164 |
C2—H2···Cl1iii | 0.95 | 2.78 | 3.683 (4) | 158 |
C32—H32···Cl2iv | 0.95 | 2.64 | 3.480 (3) | 148 |
C33—H33···Cl2v | 0.95 | 2.80 | 3.694 (4) | 158 |
C36—H36b···O3ii | 0.98 | 2.26 | 3.225 (4) | 169 |
C29—H29···O5 | 0.95 | 2.47 | 3.289 (5) | 145 |
C20—H20b···Cg1v | 0.98 | 2.58 | 3.381 (4) | 139 |
C36—H36c···Cg2iv | 0.98 | 2.81 | 3.646 (4) | 144 |
Symmetry codes: (i) x−1, y, z; (ii) −x, −y, −z+1; (iii) x−1, y−1, z; (iv) −x+1, −y, −z+1; (v) −x+1, −y, −z+2. |
Experimental details
Crystal data | |
Chemical formula | [CuCl2(C20H18N8)]·2CH4O·H2O |
Mr | 560.94 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 116 |
a, b, c (Å) | 7.430 (5), 11.627 (8), 14.026 (9) |
α, β, γ (°) | 95.848 (7), 93.477 (13), 92.920 (9) |
V (Å3) | 1201.2 (14) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.17 |
Crystal size (mm) | 0.30 × 0.25 × 0.10 |
Data collection | |
Diffractometer | Rigaku Saturn724 diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2008) |
Tmin, Tmax | 0.786, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26094, 7050, 4093 |
Rint | 0.091 |
(sin θ/λ)max (Å−1) | 0.725 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.104, 0.82 |
No. of reflections | 7050 |
No. of parameters | 311 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.20, −0.64 |
Computer programs: CrystalClear (Rigaku, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), DIAMOND (Brandenburg, 1998) and PLATON (Spek, 2009).
Cu1—Cl1 | 2.2306 (15) | Cu1—N2 | 1.989 (2) |
Cu1—Cl2 | 2.5353 (16) | Cu1—N4 | 2.011 (2) |
Cu1—N1 | 2.038 (3) |
Cg1 and Cg2 are the centroids of the N4,N5,C16–C19 and N1,C15,C28,C29–C31 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···Cl2i | 0.84 | 2.36 | 3.144 (3) | 155 |
O3—H3a···N8ii | 0.84 | 1.96 | 2.773 (4) | 164 |
C2—H2···Cl1iii | 0.95 | 2.78 | 3.683 (4) | 158 |
C32—H32···Cl2iv | 0.95 | 2.64 | 3.480 (3) | 148 |
C33—H33···Cl2v | 0.95 | 2.80 | 3.694 (4) | 158 |
C36—H36b···O3ii | 0.98 | 2.26 | 3.225 (4) | 169 |
C29—H29···O5 | 0.95 | 2.47 | 3.289 (5) | 145 |
C20—H20b···Cg1v | 0.98 | 2.58 | 3.381 (4) | 139 |
C36—H36c···Cg2iv | 0.98 | 2.81 | 3.646 (4) | 144 |
Symmetry codes: (i) x−1, y, z; (ii) −x, −y, −z+1; (iii) x−1, y−1, z; (iv) −x+1, −y, −z+1; (v) −x+1, −y, −z+2. |
Acknowledgements
The authors thank the Science Foundation Ireland for financial support (SFI; 06/RFP/CHE174 and 08/IN.1/I2047). Financial support from DRHEA (BM) and Trinity College is gratefully acknowledged.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Heterocyclic N-containing ligands have been heavily exploited to create metallo-supramolecular structures such as helicates, grids, molecular ladders, etc. Lehn and co-workers recently reported (pyridin-2-ylmethylene)hydrazinyl)pyrimidine-based ligands and their PbII, ZnII, HgII and LaIII complexes (Stadler et al., 2005; Stadler et al. 2006).
The asymmetric unit in the title compound contains a mononuclear CuII complex of 4,6-bis[(E)-1-methyl-2-(pyrindin-2-ylmethylene)hydrazinyl]pyrimidine (Fig. 1), two solvent methanol molecules and a water solvent molecule. The CuII atom is penta-coordinated by three N atoms of the organic ligand and two chloride atoms, Table 1. The coordination geometry of the central CuII is best described as distorted square pyramid. The structural distortion index (Addison et al., 1984), τ, is 0.08 compared with an ideal τ value of 0.0 for a square pyramid. In this description, the N1 N2 N4 Cl2 atoms form the basal plane, and Cl1 occupies the apical position . The bond angles around the central Cu atom range between 78.04 (10)–159.90 (7)°. The configuration around both imine bonds is assigned to be E.
The crystal structure is stabilized by hydrogen bonds between the CuII complex and the constitutional solvent molecules, Table 2, and π–π interactions between the pyrimidine and pyridine rings of symmetry related molecules (Figs 2 & 3). The centroid-centroid distances of the pyrimidine···pyridine (symmetry code:-x, -y, 2 - z) and pyridine···pyridine (symmetry code: -x, -1 - y, 2 - z) interactions are 3.750 (3) and 3.850 (3) Å, respectively. In addition, weak C—H···π interactions are also observed, Table 2.