organic compounds
6-Nitro-2,3-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepine-5,11(10H,11aH)-dione
aLaboratoire de Chimie Biorganique & Analytique, URAC 22, Université Hassan II, Mohammedia-Casablanca, BP 146, 20800 Mohammedia, Morocco, bLaboratoires de Diffraction des Rayons X, Centre National pour la Recherche Scientifique et Technique, Rabat, Morocco, and cLaboratoire de Biochimie, Environnement & Agroalimentaire, URAC 36, Université Hassan II, Mohammedia-Casablanca, BP 146, 20800 Mohammedia, Morocco
*Correspondence e-mail: a_elhakmaoui@yahoo.fr
In the two molecules of the 12H11N3O4, the seven-membered diazepine ring adopts a boat conformation (with the two phenylene C atoms representing the stern and the methine C atom the prow). The five-membered pyrrole ring, which has an makes dihedral angles of 60.47 (10) and 54.69 (9)° with the benzene ring of the benzodiazepine unit in the two molecules. In the crystal, intermolecular N—H⋯O hydrogen bonds and π–π stacking interactions [centroid–centroid distance = 3.8023 (7)–3.8946 (7) Å] lead to the formation of a three-dimensional framework.
of the title compound, CRelated literature
For the biological activity of pyrrolo[2,1-c][1,4]benzodiazepine derivatives, see: Dervan (1986); Leimgruber et al. (1975); Da Settimo et al. (2007); Herpin et al. (2000); Arima et al. (1983).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811024500/vm2102sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811024500/vm2102Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811024500/vm2102Isup3.cml
5-Nitro-1H-benzo[d][1,3]oxazine-2,4-dione (0.5 g, 2.5 mmol) and L-proline (0.29 g, 2.5 mmol) were dissolved in DMF (10 ml) and were then heated under reflux for 3 h. After cooling, the solvent was removed under reduced pressure to yield an oily residue; the residue was then purified over silica gel
using a mixture of hexane and ethyl acetate (3:1) as Under these conditions the compound was obtained as colourless crystals.The H atoms bound to C were treated as riding with their parent atoms [C—H distances are 0.93Å for CH groups with Uiso(H) = 1.2 Ueq(C), and 0.97 Å for CH3 groups with Uiso(H) = 1.5 Ueq(C)]. The nitrogen-bound H atoms were located in a difference Fourier map, and were refined with distance restraints of N–H 0.88±0.01. 2133 Friedel pairs were merged.
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: publCIF (Westrip, 2010).C12H11N3O4 | F(000) = 544 |
Mr = 261.24 | Dx = 1.462 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 246 reflections |
a = 10.7364 (2) Å | θ = 2.4–26.3° |
b = 6.8925 (1) Å | µ = 0.11 mm−1 |
c = 16.3901 (3) Å | T = 296 K |
β = 101.870 (1)° | Prism, colourless |
V = 1186.94 (4) Å3 | 0.23 × 0.20 × 0.15 mm |
Z = 4 |
Bruker APEXII CCD detector diffractometer | 2452 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.021 |
Graphite monochromator | θmax = 26.0°, θmin = 2.5° |
ω and ϕ scans | h = −13→13 |
14768 measured reflections | k = −8→8 |
2543 independent reflections | l = −20→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.080 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0518P)2 + 0.1616P] where P = (Fo2 + 2Fc2)/3 |
2543 reflections | (Δ/σ)max < 0.001 |
351 parameters | Δρmax = 0.17 e Å−3 |
1 restraint | Δρmin = −0.16 e Å−3 |
C12H11N3O4 | V = 1186.94 (4) Å3 |
Mr = 261.24 | Z = 4 |
Monoclinic, P21 | Mo Kα radiation |
a = 10.7364 (2) Å | µ = 0.11 mm−1 |
b = 6.8925 (1) Å | T = 296 K |
c = 16.3901 (3) Å | 0.23 × 0.20 × 0.15 mm |
β = 101.870 (1)° |
Bruker APEXII CCD detector diffractometer | 2452 reflections with I > 2σ(I) |
14768 measured reflections | Rint = 0.021 |
2543 independent reflections |
R[F2 > 2σ(F2)] = 0.030 | 1 restraint |
wR(F2) = 0.080 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.17 e Å−3 |
2543 reflections | Δρmin = −0.16 e Å−3 |
351 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C100 | 0.4871 (2) | 0.4617 (3) | 1.03240 (11) | 0.0410 (4) | |
C101 | 0.3608 (2) | 0.4649 (3) | 0.99613 (13) | 0.0445 (5) | |
C102 | 0.32175 (19) | 0.4505 (3) | 0.91009 (14) | 0.0442 (5) | |
C103 | 0.41314 (17) | 0.4215 (3) | 0.86410 (11) | 0.0359 (4) | |
C104 | 0.54297 (16) | 0.4047 (3) | 0.89854 (10) | 0.0311 (4) | |
C105 | 0.58012 (18) | 0.4374 (3) | 0.98486 (10) | 0.0336 (4) | |
C106 | 0.8095 (2) | 0.5177 (3) | 1.00041 (13) | 0.0483 (5) | |
C107 | 0.63255 (16) | 0.3127 (3) | 0.85085 (10) | 0.0316 (4) | |
C109 | 0.84963 (18) | 0.3029 (4) | 0.82441 (13) | 0.0479 (5) | |
C110 | 0.9600 (2) | 0.4396 (6) | 0.8535 (2) | 0.0749 (9) | |
C111 | 0.9040 (3) | 0.6286 (5) | 0.8754 (2) | 0.0752 (9) | |
C112 | 0.7860 (2) | 0.5679 (4) | 0.90711 (14) | 0.0485 (5) | |
C200 | 0.44163 (18) | 0.4931 (3) | 0.38760 (12) | 0.0399 (4) | |
C201 | 0.40473 (19) | 0.4968 (3) | 0.46329 (13) | 0.0440 (5) | |
C202 | 0.4948 (2) | 0.5030 (3) | 0.53689 (12) | 0.0430 (4) | |
C203 | 0.62060 (19) | 0.5134 (3) | 0.53182 (11) | 0.0374 (4) | |
C204 | 0.66333 (16) | 0.5194 (3) | 0.45691 (10) | 0.0318 (4) | |
C205 | 0.57090 (16) | 0.4986 (3) | 0.38404 (10) | 0.0318 (4) | |
C206 | 0.70022 (18) | 0.4042 (3) | 0.28050 (11) | 0.0378 (4) | |
C207 | 0.79608 (17) | 0.5876 (3) | 0.45641 (11) | 0.0360 (4) | |
C209 | 0.98134 (19) | 0.5664 (4) | 0.39103 (15) | 0.0522 (6) | |
C210 | 1.0011 (2) | 0.4484 (5) | 0.31649 (15) | 0.0655 (8) | |
C211 | 0.9243 (2) | 0.2650 (4) | 0.32000 (15) | 0.0559 (6) | |
C212 | 0.80720 (17) | 0.3350 (3) | 0.35062 (11) | 0.0369 (4) | |
H100 | 0.5118 | 0.4760 | 1.0899 | 0.049* | |
H101 | 0.3004 | 0.4767 | 1.0292 | 0.053* | |
H102 | 0.2362 | 0.4603 | 0.8845 | 0.053* | |
H10A | 0.8258 | 0.2995 | 0.7640 | 0.058* | |
H10B | 0.8700 | 0.1724 | 0.8451 | 0.058* | |
H10N | 0.539 (3) | 0.528 (5) | 0.2657 (18) | 0.056 (8)* | |
H112 | 0.7192 | 0.6665 | 0.8932 | 0.058* | |
H11A | 0.8815 | 0.7115 | 0.8267 | 0.090* | |
H11B | 0.9636 | 0.6972 | 0.9182 | 0.090* | |
H11C | 1.0174 | 0.3867 | 0.9019 | 0.090* | |
H11D | 1.0070 | 0.4595 | 0.8096 | 0.090* | |
H200 | 0.3803 | 0.4870 | 0.3385 | 0.048* | |
H201 | 0.3187 | 0.4950 | 0.4649 | 0.053* | |
H202 | 0.4709 | 0.5002 | 0.5883 | 0.052* | |
H20A | 1.0469 | 0.5388 | 0.4399 | 0.063* | |
H20B | 0.9812 | 0.7043 | 0.3793 | 0.063* | |
H20N | 0.716 (2) | 0.416 (5) | 1.0780 (17) | 0.058 (7)* | |
H212 | 0.7765 | 0.2341 | 0.3837 | 0.044* | |
H21A | 0.9722 | 0.1718 | 0.3584 | 0.067* | |
H21B | 0.9005 | 0.2058 | 0.2653 | 0.067* | |
H21C | 0.9703 | 0.5183 | 0.2649 | 0.079* | |
H21D | 1.0905 | 0.4183 | 0.3208 | 0.079* | |
N10 | 0.60011 (15) | 0.4905 (3) | 0.30409 (9) | 0.0369 (4) | |
N11 | 0.71691 (17) | 0.5079 (3) | 0.61116 (9) | 0.0464 (4) | |
N12 | 0.85585 (14) | 0.5013 (3) | 0.40290 (9) | 0.0371 (4) | |
N20 | 0.70780 (16) | 0.4399 (3) | 1.02707 (10) | 0.0413 (4) | |
N21 | 0.36959 (16) | 0.4213 (3) | 0.77185 (11) | 0.0479 (4) | |
N22 | 0.74763 (15) | 0.3889 (3) | 0.86106 (10) | 0.0380 (4) | |
O11 | 0.60185 (13) | 0.1634 (2) | 0.81012 (8) | 0.0435 (4) | |
O12 | 0.91105 (16) | 0.5401 (4) | 1.04775 (12) | 0.0739 (6) | |
O13 | 0.26234 (16) | 0.3669 (4) | 0.74408 (12) | 0.0761 (6) | |
O14 | 0.44340 (18) | 0.4853 (4) | 0.73230 (10) | 0.0743 (6) | |
O21 | 0.84147 (15) | 0.7225 (3) | 0.50119 (10) | 0.0571 (4) | |
O22 | 0.70331 (15) | 0.3858 (3) | 0.20681 (8) | 0.0581 (5) | |
O23 | 0.6951 (2) | 0.5986 (4) | 0.66967 (9) | 0.0723 (6) | |
O24 | 0.80876 (17) | 0.4033 (4) | 0.61259 (10) | 0.0725 (6) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C100 | 0.0594 (12) | 0.0344 (10) | 0.0313 (8) | 0.0026 (9) | 0.0144 (8) | −0.0011 (8) |
C101 | 0.0534 (12) | 0.0395 (11) | 0.0477 (11) | 0.0024 (9) | 0.0268 (9) | −0.0014 (9) |
C102 | 0.0350 (9) | 0.0462 (12) | 0.0522 (11) | 0.0019 (9) | 0.0107 (8) | −0.0011 (10) |
C103 | 0.0352 (9) | 0.0384 (10) | 0.0328 (8) | 0.0023 (8) | 0.0039 (7) | 0.0010 (8) |
C104 | 0.0335 (8) | 0.0321 (9) | 0.0275 (7) | −0.0022 (7) | 0.0057 (6) | 0.0010 (7) |
C105 | 0.0420 (9) | 0.0288 (9) | 0.0290 (8) | 0.0006 (8) | 0.0054 (7) | −0.0002 (7) |
C106 | 0.0483 (11) | 0.0426 (11) | 0.0478 (11) | −0.0081 (10) | −0.0043 (9) | −0.0095 (10) |
C107 | 0.0311 (8) | 0.0397 (10) | 0.0225 (7) | −0.0023 (8) | 0.0021 (6) | 0.0011 (7) |
C109 | 0.0339 (10) | 0.0676 (15) | 0.0441 (10) | 0.0059 (10) | 0.0124 (8) | 0.0114 (11) |
C110 | 0.0398 (12) | 0.097 (2) | 0.0907 (19) | −0.0091 (14) | 0.0187 (12) | 0.021 (2) |
C111 | 0.0662 (17) | 0.079 (2) | 0.0801 (18) | −0.0344 (16) | 0.0148 (14) | 0.0114 (17) |
C112 | 0.0483 (11) | 0.0458 (12) | 0.0499 (11) | −0.0153 (10) | 0.0064 (9) | 0.0005 (10) |
C200 | 0.0364 (9) | 0.0400 (10) | 0.0417 (9) | −0.0023 (9) | 0.0046 (7) | 0.0022 (9) |
C201 | 0.0381 (10) | 0.0452 (11) | 0.0519 (11) | −0.0033 (9) | 0.0163 (8) | 0.0039 (10) |
C202 | 0.0537 (11) | 0.0398 (10) | 0.0407 (9) | 0.0029 (10) | 0.0217 (8) | 0.0050 (9) |
C203 | 0.0479 (10) | 0.0353 (9) | 0.0289 (8) | 0.0061 (9) | 0.0079 (7) | 0.0014 (8) |
C204 | 0.0358 (9) | 0.0313 (9) | 0.0282 (8) | 0.0027 (7) | 0.0059 (7) | 0.0000 (7) |
C205 | 0.0359 (9) | 0.0294 (8) | 0.0299 (8) | 0.0005 (8) | 0.0065 (7) | 0.0018 (7) |
C206 | 0.0412 (9) | 0.0434 (10) | 0.0273 (8) | −0.0008 (9) | 0.0038 (7) | −0.0013 (8) |
C207 | 0.0346 (9) | 0.0420 (10) | 0.0292 (8) | 0.0010 (8) | 0.0015 (7) | −0.0022 (8) |
C209 | 0.0338 (10) | 0.0653 (15) | 0.0589 (12) | −0.0050 (10) | 0.0124 (9) | −0.0021 (12) |
C210 | 0.0449 (11) | 0.100 (2) | 0.0558 (13) | 0.0031 (14) | 0.0205 (10) | −0.0026 (15) |
C211 | 0.0461 (12) | 0.0721 (17) | 0.0486 (11) | 0.0161 (12) | 0.0078 (9) | −0.0136 (12) |
C212 | 0.0393 (10) | 0.0408 (10) | 0.0298 (8) | 0.0036 (8) | 0.0047 (7) | −0.0026 (8) |
N10 | 0.0374 (8) | 0.0469 (9) | 0.0236 (7) | 0.0050 (8) | −0.0001 (6) | 0.0032 (7) |
N11 | 0.0565 (10) | 0.0552 (11) | 0.0274 (7) | 0.0124 (10) | 0.0083 (7) | 0.0032 (8) |
N12 | 0.0316 (7) | 0.0454 (9) | 0.0339 (7) | −0.0014 (7) | 0.0054 (6) | −0.0026 (8) |
N20 | 0.0489 (9) | 0.0438 (10) | 0.0264 (7) | −0.0011 (8) | −0.0033 (6) | −0.0014 (7) |
N21 | 0.0385 (9) | 0.0599 (11) | 0.0410 (8) | 0.0143 (9) | −0.0017 (7) | −0.0011 (9) |
N22 | 0.0335 (7) | 0.0454 (9) | 0.0350 (7) | −0.0040 (7) | 0.0070 (6) | −0.0002 (7) |
O11 | 0.0392 (7) | 0.0551 (9) | 0.0365 (7) | −0.0099 (7) | 0.0085 (5) | −0.0170 (7) |
O12 | 0.0528 (9) | 0.0925 (16) | 0.0643 (10) | −0.0183 (10) | −0.0158 (8) | −0.0133 (11) |
O13 | 0.0474 (9) | 0.1032 (18) | 0.0660 (11) | 0.0102 (11) | −0.0155 (8) | −0.0227 (12) |
O14 | 0.0711 (11) | 0.1173 (18) | 0.0343 (7) | 0.0125 (13) | 0.0102 (7) | 0.0148 (11) |
O21 | 0.0456 (8) | 0.0651 (11) | 0.0592 (9) | −0.0130 (8) | 0.0075 (7) | −0.0283 (9) |
O22 | 0.0600 (9) | 0.0874 (13) | 0.0262 (6) | 0.0125 (10) | 0.0070 (6) | −0.0042 (8) |
O23 | 0.0948 (13) | 0.0859 (14) | 0.0326 (7) | 0.0271 (12) | 0.0053 (8) | −0.0093 (9) |
O24 | 0.0681 (10) | 0.1011 (16) | 0.0439 (8) | 0.0377 (12) | 0.0012 (7) | 0.0013 (10) |
C100—H100 | 0.9300 | C203—N11 | 1.486 (2) |
C100—C101 | 1.365 (3) | C203—C202 | 1.372 (3) |
C101—H101 | 0.9300 | C204—C207 | 1.502 (3) |
C101—C102 | 1.390 (3) | C204—C203 | 1.397 (2) |
C102—H102 | 0.9300 | C204—C205 | 1.394 (2) |
C103—N21 | 1.488 (2) | C205—N10 | 1.410 (2) |
C103—C102 | 1.369 (3) | C205—C200 | 1.402 (3) |
C104—C107 | 1.499 (2) | C206—N10 | 1.352 (3) |
C104—C105 | 1.407 (2) | C206—O22 | 1.222 (2) |
C104—C103 | 1.397 (2) | C207—O21 | 1.222 (3) |
C105—N20 | 1.403 (2) | C209—H20B | 0.9700 |
C105—C100 | 1.397 (3) | C209—H20A | 0.9700 |
C106—N20 | 1.366 (3) | C209—C210 | 1.519 (4) |
C106—O12 | 1.211 (3) | C210—H21D | 0.9700 |
C107—N22 | 1.321 (2) | C210—H21C | 0.9700 |
C107—O11 | 1.234 (2) | C211—H21B | 0.9700 |
C109—H10B | 0.9700 | C211—H21A | 0.9700 |
C109—H10A | 0.9700 | C211—C210 | 1.516 (5) |
C109—C110 | 1.512 (4) | C212—H212 | 0.9800 |
C110—H11D | 0.9700 | C212—C211 | 1.525 (3) |
C110—H11C | 0.9700 | C212—C206 | 1.525 (3) |
C111—H11B | 0.9700 | N10—H10N | 0.85 (3) |
C111—H11A | 0.9700 | N11—O24 | 1.218 (3) |
C111—C110 | 1.508 (5) | N11—O23 | 1.207 (2) |
C112—H112 | 0.9800 | N12—C209 | 1.470 (2) |
C112—C106 | 1.537 (3) | N12—C212 | 1.462 (3) |
C112—C111 | 1.524 (3) | N12—C207 | 1.329 (3) |
C200—H200 | 0.9300 | N20—H20N | 0.84 (3) |
C200—C201 | 1.378 (3) | N21—O13 | 1.208 (3) |
C201—H201 | 0.9300 | N21—O14 | 1.206 (3) |
C202—H202 | 0.9300 | N22—C109 | 1.477 (3) |
C202—C201 | 1.383 (3) | N22—C112 | 1.461 (3) |
C105—C100—H100 | 119.4 | C204—C203—N11 | 118.34 (17) |
C101—C100—H100 | 119.4 | C202—C203—N11 | 117.53 (17) |
C101—C100—C105 | 121.28 (18) | C202—C203—C204 | 124.06 (18) |
C102—C101—H101 | 119.8 | C203—C204—C207 | 119.82 (16) |
C100—C101—H101 | 119.8 | C205—C204—C207 | 122.44 (15) |
C100—C101—C102 | 120.41 (17) | C205—C204—C203 | 116.44 (16) |
C101—C102—H102 | 121.0 | C200—C205—N10 | 116.68 (16) |
C103—C102—H102 | 121.0 | C204—C205—N10 | 123.03 (15) |
C103—C102—C101 | 117.92 (18) | C204—C205—C200 | 120.24 (16) |
C104—C103—N21 | 119.29 (16) | N10—C206—C212 | 116.22 (15) |
C102—C103—N21 | 116.65 (17) | O22—C206—C212 | 122.90 (18) |
C102—C103—C104 | 123.93 (17) | O22—C206—N10 | 120.88 (18) |
C105—C104—C107 | 120.83 (16) | N12—C207—C204 | 116.80 (17) |
C103—C104—C107 | 121.21 (15) | O21—C207—C204 | 119.76 (17) |
C103—C104—C105 | 116.48 (16) | O21—C207—N12 | 123.36 (18) |
N20—C105—C104 | 122.95 (17) | H20A—C209—H20B | 109.1 |
C100—C105—C104 | 119.53 (18) | C210—C209—H20B | 111.1 |
C100—C105—N20 | 117.48 (16) | N12—C209—H20B | 111.1 |
N20—C106—C112 | 115.31 (17) | C210—C209—H20A | 111.1 |
O12—C106—C112 | 123.4 (2) | N12—C209—H20A | 111.1 |
O12—C106—N20 | 121.2 (2) | N12—C209—C210 | 103.11 (19) |
N22—C107—C104 | 116.70 (17) | H21C—C210—H21D | 108.9 |
O11—C107—C104 | 120.41 (16) | C209—C210—H21D | 110.9 |
O11—C107—N22 | 122.60 (18) | C211—C210—H21D | 110.9 |
H10A—C109—H10B | 109.1 | C209—C210—H21C | 110.9 |
C110—C109—H10B | 111.2 | C211—C210—H21C | 110.9 |
N22—C109—H10B | 111.2 | C211—C210—C209 | 104.39 (19) |
C110—C109—H10A | 111.2 | H21A—C211—H21B | 109.0 |
N22—C109—H10A | 111.2 | C212—C211—H21B | 111.0 |
N22—C109—C110 | 102.7 (2) | C210—C211—H21B | 111.0 |
H11C—C110—H11D | 108.6 | C212—C211—H21A | 111.0 |
C109—C110—H11D | 110.4 | C210—C211—H21A | 111.0 |
C111—C110—H11D | 110.4 | C210—C211—C212 | 103.9 (2) |
C109—C110—H11C | 110.4 | C211—C212—H212 | 110.6 |
C111—C110—H11C | 110.4 | C206—C212—H212 | 110.6 |
C111—C110—C109 | 106.8 (2) | N12—C212—H212 | 110.6 |
H11A—C111—H11B | 109.0 | C206—C212—C211 | 113.29 (16) |
C112—C111—H11B | 110.9 | N12—C212—C211 | 102.79 (17) |
C110—C111—H11B | 110.9 | N12—C212—C206 | 108.64 (17) |
C112—C111—H11A | 110.9 | C205—N10—H10N | 113.2 (18) |
C110—C111—H11A | 110.9 | C206—N10—H10N | 117.2 (18) |
C110—C111—C112 | 104.1 (2) | C206—N10—C205 | 128.68 (16) |
C106—C112—H112 | 110.5 | O24—N11—C203 | 116.55 (17) |
C111—C112—H112 | 110.5 | O23—N11—C203 | 117.90 (18) |
N22—C112—H112 | 110.5 | O23—N11—O24 | 125.44 (18) |
C111—C112—C106 | 115.0 (2) | C212—N12—C209 | 112.85 (16) |
N22—C112—C106 | 107.16 (18) | C207—N12—C209 | 122.05 (19) |
N22—C112—C111 | 102.8 (2) | C207—N12—C212 | 125.10 (16) |
C205—C200—H200 | 119.8 | C105—N20—H20N | 112.6 (18) |
C201—C200—H200 | 119.8 | C106—N20—H20N | 117.8 (19) |
C201—C200—C205 | 120.49 (18) | C106—N20—C105 | 127.69 (17) |
C202—C201—H201 | 119.8 | O13—N21—C103 | 117.34 (19) |
C200—C201—H201 | 119.8 | O14—N21—C103 | 116.24 (18) |
C200—C201—C202 | 120.46 (18) | O14—N21—O13 | 126.3 (2) |
C201—C202—H202 | 121.0 | C112—N22—C109 | 113.29 (17) |
C203—C202—H202 | 121.0 | C107—N22—C109 | 122.77 (19) |
C203—C202—C201 | 118.00 (18) | C107—N22—C112 | 123.91 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10N···O11i | 0.85 (3) | 1.98 (3) | 2.821 (2) | 169 (3) |
N20—H20N···O22ii | 0.84 (3) | 2.15 (3) | 2.980 (2) | 169 (2) |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) x, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | C12H11N3O4 |
Mr | 261.24 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 296 |
a, b, c (Å) | 10.7364 (2), 6.8925 (1), 16.3901 (3) |
β (°) | 101.870 (1) |
V (Å3) | 1186.94 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.23 × 0.20 × 0.15 |
Data collection | |
Diffractometer | Bruker APEXII CCD detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14768, 2543, 2452 |
Rint | 0.021 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.080, 1.04 |
No. of reflections | 2543 |
No. of parameters | 351 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.17, −0.16 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10N···O11i | 0.85 (3) | 1.98 (3) | 2.821 (2) | 169 (3) |
N20—H20N···O22ii | 0.84 (3) | 2.15 (3) | 2.980 (2) | 169 (2) |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) x, y, z+1. |
Acknowledgements
The authors thank the Unit of Support for Technical and Scientific Research (UATRS, CNRST) for the X-ray measurements.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzodiazepines form a well known and widely applied class of biologically active compounds (Da Settimo et al., 2007) and are representatives of the family of privileged structures (Herpin et al., 2000). In the area of molecular recognition considerable efforts have been devoted to the synthesis of pyrrolo[2,1 c][1,4]benzodiazepines (PBDs) that can recognize and bind to specific sequences of DNA. They are potential regulators of gene expression with possible application as therapeutic agents in the treatment of genetic disorders including cancer. Furthermore, they can be used as affinity-cleavage reagents in molecular biology (Dervan, 1986). The PBD ring system is also found in natural antitumor antibiotics from Streptomyces species such as Anthramycin (Leimgruber et al., 1975), Tomaymycine (Arima et al., 1983).
The compound, C24H22N6O8, crystallizes with two reasonably similar molecules in the asymmetric unit (Fig. 1, r.m.s. deviation of 0.1051 Å for 19 non-H atoms fitted). The nitro and benzene systems are inclined at dihedral angles of 30.0 (3) and 41.0 (3)° in the first and second molecule of the asymetric unit, respectively. The seven-membered diazepine ring adopts a boat conformation (with the two phenylene C atoms representing the stern and the methine C atom the prow). The five-membered pyrrolo ring, which has an envelope conformation, makes dihedral angles of 60.47 (10)° and 54.69 (9)° with the benzene ring of the benzodiazepine in the two independent molecules of the unit.
In the crystal structure, intermolecular N—H···O hydrogen bonds (Fig. 2, Table 1) and π–π stacking interactions (centroid-centroid distance = 3.8023 (7) Å to 3.8946 (7) Å) lead to the formation of a three-dimensional framework.