organic compounds
2-Aminoanilinium 6-carboxypicolinate monohydrate
aCollege of Food Science and Engineering, Northwest A & F University, Yang Ling 712100, People's Republic of China, and bCollege of Chemistry, Jilin University, Changchun 130012, People's Republic of China
*Correspondence e-mail: wyt991023@gmail.com
In the title compound, C6H9N2+·C7H4NO4−·H2O, one amino group of diaminobenzene is protonated while one carboxy group of pyridine-2,6-dicarboxylic acid is deprotonated. In the anion, the CO2 and CO2H groups make dihedral angles of 4.0 (5) and 8.7 (4)° with the pyridine ring. In the crystal, extensive N—H⋯O, N—H⋯N and O—H⋯O hydrogen bonds occur between anions, cations and water molecules.
Related literature
For related compounds, see: Andre et al. (2011); Blagden et al. (2008); Smith et al. (2000); Kapildev et al. (2011).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2005); cell CrystalClear data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811025050/xu5250sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811025050/xu5250Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811025050/xu5250Isup3.cml
A mixture of pyridine-2,6-dicarboxylic acid (2.0 mmol), benzene-1,2-diamine (2.0 mmol) and 40 ml water were added into a 100 ml flask and refluxed for 5 h, then cooled and filtrated. The solution was evaporated slowly in the air. Colorless block crystals suitable for X-ray analysis were obtained after one week.
All H atoms attached to C atoms were fixed geometrically and treated as riding with C-H = 0.93 Å (aromatic) with Uiso(H) = 1.2Ueq(C). The H atoms bonded to N1, N2, O1W and O4 were located in a difference Fourier map, in the last stage of the
they were restrained with the H—N2 = 0.90, H—N1 = 0.89 and H—O = 0.82 Å. Uiso(H)=1.5Ueq(N1,O1W,O4) and Uiso(H) = 1.2Ueq(N2). As no significant anomalous scatterings, Friedel pairs were merged.Data collection: CrystalClear (Rigaku, 2005); cell
CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Molecular view of the title compound with the atomic numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. | |
Fig. 2. The crystal packing of the title compound viewed along the c axis showing the three-dimensionnal hydrogen bondings network (dashed line). Hydrogen atoms not involved in hydrogen bonding have been omitted for clarity. |
C6H9N2+·C7H4NO4−·H2O | F(000) = 616 |
Mr = 293.28 | Dx = 1.425 Mg m−3 |
Monoclinic, Cc | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: C -2yc | Cell parameters from 1555 reflections |
a = 12.408 (3) Å | θ = 2.2–27.4° |
b = 13.932 (3) Å | µ = 0.11 mm−1 |
c = 8.0951 (16) Å | T = 298 K |
β = 102.41 (3)° | Block, colorless |
V = 1366.6 (5) Å3 | 0.30 × 0.25 × 0.15 mm |
Z = 4 |
Rigaku Mercury2 diffractometer | 1555 independent reflections |
Radiation source: fine-focus sealed tube | 1393 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
Detector resolution: 13.6612 pixels mm-1 | θmax = 27.4°, θmin = 2.2° |
CCD profile fitting scans | h = −16→15 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | k = −18→18 |
Tmin = 0.910, Tmax = 1.000 | l = −10→10 |
7343 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.117 | H-atom parameters constrained |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0734P)2] where P = (Fo2 + 2Fc2)/3 |
1555 reflections | (Δ/σ)max < 0.001 |
191 parameters | Δρmax = 0.19 e Å−3 |
2 restraints | Δρmin = −0.22 e Å−3 |
C6H9N2+·C7H4NO4−·H2O | V = 1366.6 (5) Å3 |
Mr = 293.28 | Z = 4 |
Monoclinic, Cc | Mo Kα radiation |
a = 12.408 (3) Å | µ = 0.11 mm−1 |
b = 13.932 (3) Å | T = 298 K |
c = 8.0951 (16) Å | 0.30 × 0.25 × 0.15 mm |
β = 102.41 (3)° |
Rigaku Mercury2 diffractometer | 1555 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | 1393 reflections with I > 2σ(I) |
Tmin = 0.910, Tmax = 1.000 | Rint = 0.041 |
7343 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 2 restraints |
wR(F2) = 0.117 | H-atom parameters constrained |
S = 1.12 | Δρmax = 0.19 e Å−3 |
1555 reflections | Δρmin = −0.22 e Å−3 |
191 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1W | 0.9144 (2) | 0.11509 (17) | 0.8457 (3) | 0.0468 (6) | |
H1WA | 0.9052 | 0.0737 | 0.9133 | 0.070* | |
H1WB | 0.8972 | 0.0905 | 0.7516 | 0.070* | |
O1 | 0.75215 (19) | 0.17288 (15) | 0.4341 (3) | 0.0456 (6) | |
O2 | 0.80493 (18) | 0.02830 (16) | 0.5392 (3) | 0.0412 (5) | |
N3 | 0.56474 (19) | 0.10218 (18) | 0.2422 (3) | 0.0286 (5) | |
O3 | 0.30560 (19) | 0.10298 (17) | −0.0480 (3) | 0.0436 (6) | |
O4 | 0.41055 (17) | 0.22264 (15) | 0.0827 (3) | 0.0397 (5) | |
H4 | 0.3599 | 0.2569 | 0.0337 | 0.060* | |
N1 | 0.61623 (19) | 0.31257 (19) | 0.2363 (3) | 0.0296 (5) | |
H1A | 0.5582 | 0.3434 | 0.2587 | 0.044* | |
H1B | 0.6772 | 0.3318 | 0.3080 | 0.044* | |
H1C | 0.6076 | 0.2497 | 0.2476 | 0.044* | |
C8 | 0.6256 (2) | 0.33386 (19) | 0.0621 (3) | 0.0290 (6) | |
N2 | 0.7964 (2) | 0.2434 (2) | 0.1010 (4) | 0.0452 (7) | |
H2A | 0.8342 | 0.2069 | 0.0413 | 0.054* | |
H2B | 0.7933 | 0.2178 | 0.2020 | 0.054* | |
C1 | 0.7403 (2) | 0.0831 (2) | 0.4445 (4) | 0.0304 (6) | |
C6 | 0.4728 (2) | 0.0640 (2) | 0.1448 (4) | 0.0293 (6) | |
C7 | 0.3880 (2) | 0.1321 (2) | 0.0494 (3) | 0.0296 (6) | |
C3 | 0.6225 (3) | −0.0586 (2) | 0.3262 (4) | 0.0371 (7) | |
H3A | 0.6748 | −0.0990 | 0.3909 | 0.044* | |
C9 | 0.7137 (2) | 0.2968 (2) | 0.0015 (4) | 0.0336 (6) | |
C5 | 0.4515 (3) | −0.0335 (2) | 0.1314 (4) | 0.0392 (7) | |
H5A | 0.3870 | −0.0566 | 0.0623 | 0.047* | |
C13 | 0.5445 (3) | 0.3890 (2) | −0.0392 (4) | 0.0378 (7) | |
H13A | 0.4864 | 0.4131 | 0.0041 | 0.045* | |
C4 | 0.5287 (3) | −0.0961 (2) | 0.2238 (5) | 0.0427 (8) | |
H4A | 0.5173 | −0.1621 | 0.2167 | 0.051* | |
C10 | 0.7174 (3) | 0.3179 (3) | −0.1655 (5) | 0.0471 (8) | |
H10A | 0.7756 | 0.2946 | −0.2097 | 0.057* | |
C2 | 0.6380 (2) | 0.0403 (2) | 0.3314 (4) | 0.0289 (6) | |
C12 | 0.5500 (3) | 0.4080 (3) | −0.2044 (5) | 0.0503 (9) | |
H12A | 0.4953 | 0.4444 | −0.2731 | 0.060* | |
C11 | 0.6366 (4) | 0.3728 (3) | −0.2669 (5) | 0.0549 (10) | |
H11A | 0.6409 | 0.3859 | −0.3779 | 0.066* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1W | 0.0461 (14) | 0.0470 (14) | 0.0444 (13) | −0.0005 (11) | 0.0035 (10) | 0.0032 (10) |
O1 | 0.0368 (12) | 0.0319 (12) | 0.0563 (14) | −0.0070 (10) | −0.0164 (10) | 0.0073 (11) |
O2 | 0.0311 (11) | 0.0399 (12) | 0.0452 (12) | 0.0016 (9) | −0.0085 (9) | 0.0071 (10) |
N3 | 0.0222 (10) | 0.0302 (13) | 0.0312 (11) | −0.0011 (9) | 0.0014 (9) | 0.0013 (10) |
O3 | 0.0307 (12) | 0.0408 (13) | 0.0504 (14) | 0.0011 (9) | −0.0108 (10) | −0.0029 (10) |
O4 | 0.0296 (11) | 0.0318 (10) | 0.0500 (13) | 0.0023 (8) | −0.0086 (9) | 0.0000 (10) |
N1 | 0.0244 (11) | 0.0326 (12) | 0.0292 (12) | 0.0008 (9) | −0.0003 (9) | −0.0013 (10) |
C8 | 0.0278 (14) | 0.0293 (13) | 0.0286 (14) | −0.0010 (11) | 0.0035 (10) | −0.0011 (11) |
N2 | 0.0343 (14) | 0.0463 (16) | 0.0553 (18) | 0.0115 (12) | 0.0103 (13) | −0.0012 (14) |
C1 | 0.0246 (13) | 0.0325 (14) | 0.0321 (14) | −0.0003 (11) | 0.0015 (10) | 0.0035 (12) |
C6 | 0.0217 (12) | 0.0314 (14) | 0.0331 (14) | −0.0010 (11) | 0.0020 (10) | −0.0005 (12) |
C7 | 0.0228 (13) | 0.0366 (14) | 0.0272 (13) | −0.0010 (11) | 0.0008 (10) | −0.0015 (12) |
C3 | 0.0298 (16) | 0.0312 (15) | 0.0480 (18) | 0.0007 (12) | 0.0033 (13) | 0.0080 (13) |
C9 | 0.0298 (14) | 0.0314 (15) | 0.0395 (16) | −0.0014 (12) | 0.0072 (12) | −0.0035 (12) |
C5 | 0.0291 (16) | 0.0372 (15) | 0.0461 (18) | −0.0059 (13) | −0.0032 (13) | −0.0018 (14) |
C13 | 0.0357 (15) | 0.0397 (16) | 0.0369 (17) | 0.0079 (13) | 0.0054 (12) | 0.0033 (13) |
C4 | 0.0363 (16) | 0.0275 (15) | 0.060 (2) | −0.0048 (13) | 0.0016 (15) | 0.0003 (14) |
C10 | 0.049 (2) | 0.053 (2) | 0.045 (2) | 0.0026 (16) | 0.0206 (16) | −0.0055 (16) |
C2 | 0.0228 (13) | 0.0303 (14) | 0.0320 (13) | −0.0012 (11) | 0.0026 (11) | 0.0021 (12) |
C12 | 0.057 (2) | 0.053 (2) | 0.0387 (18) | 0.0148 (18) | 0.0064 (15) | 0.0112 (16) |
C11 | 0.072 (3) | 0.061 (2) | 0.0357 (19) | 0.008 (2) | 0.0202 (17) | 0.0082 (17) |
O1W—H1WA | 0.8201 | C1—C2 | 1.518 (4) |
O1W—H1WB | 0.8201 | C6—C5 | 1.384 (4) |
O1—C1 | 1.264 (4) | C6—C7 | 1.502 (4) |
O2—C1 | 1.245 (4) | C3—C4 | 1.378 (5) |
N3—C2 | 1.345 (4) | C3—C2 | 1.391 (4) |
N3—C6 | 1.349 (4) | C3—H3A | 0.9300 |
O3—C7 | 1.219 (3) | C9—C10 | 1.394 (5) |
O4—C7 | 1.307 (4) | C5—C4 | 1.390 (5) |
O4—H4 | 0.8201 | C5—H5A | 0.9300 |
N1—C8 | 1.470 (4) | C13—C12 | 1.379 (5) |
N1—H1A | 0.8900 | C13—H13A | 0.9300 |
N1—H1B | 0.8900 | C4—H4A | 0.9300 |
N1—H1C | 0.8900 | C10—C11 | 1.382 (6) |
C8—C13 | 1.386 (4) | C10—H10A | 0.9300 |
C8—C9 | 1.390 (4) | C12—C11 | 1.373 (6) |
N2—C9 | 1.378 (4) | C12—H12A | 0.9300 |
N2—H2A | 0.9002 | C11—H11A | 0.9300 |
N2—H2B | 0.8998 | ||
H1WA—O1W—H1WB | 106.3 | C2—C3—H3A | 120.4 |
C2—N3—C6 | 116.7 (2) | N2—C9—C8 | 122.5 (3) |
C7—O4—H4 | 110.7 | N2—C9—C10 | 120.3 (3) |
C8—N1—H1A | 109.5 | C8—C9—C10 | 117.1 (3) |
C8—N1—H1B | 109.5 | C6—C5—C4 | 118.4 (3) |
H1A—N1—H1B | 109.5 | C6—C5—H5A | 120.8 |
C8—N1—H1C | 109.5 | C4—C5—H5A | 120.8 |
H1A—N1—H1C | 109.5 | C12—C13—C8 | 119.9 (3) |
H1B—N1—H1C | 109.5 | C12—C13—H13A | 120.0 |
C13—C8—C9 | 121.6 (3) | C8—C13—H13A | 120.0 |
C13—C8—N1 | 118.8 (3) | C3—C4—C5 | 118.8 (3) |
C9—C8—N1 | 119.6 (2) | C3—C4—H4A | 120.6 |
C9—N2—H2A | 113.6 | C5—C4—H4A | 120.6 |
C9—N2—H2B | 125.0 | C11—C10—C9 | 121.4 (3) |
H2A—N2—H2B | 113.1 | C11—C10—H10A | 119.3 |
O2—C1—O1 | 125.4 (3) | C9—C10—H10A | 119.3 |
O2—C1—C2 | 118.4 (3) | N3—C2—C3 | 123.1 (3) |
O1—C1—C2 | 116.3 (2) | N3—C2—C1 | 116.9 (2) |
N3—C6—C5 | 123.8 (3) | C3—C2—C1 | 120.0 (3) |
N3—C6—C7 | 117.6 (2) | C11—C12—C13 | 119.6 (3) |
C5—C6—C7 | 118.6 (3) | C11—C12—H12A | 120.2 |
O3—C7—O4 | 124.6 (3) | C13—C12—H12A | 120.2 |
O3—C7—C6 | 121.3 (3) | C12—C11—C10 | 120.3 (3) |
O4—C7—C6 | 114.1 (2) | C12—C11—H11A | 119.8 |
C4—C3—C2 | 119.1 (3) | C10—C11—H11A | 119.8 |
C4—C3—H3A | 120.4 | ||
C2—N3—C6—C5 | −0.6 (4) | C6—C5—C4—C3 | 0.7 (5) |
C2—N3—C6—C7 | 177.7 (3) | N2—C9—C10—C11 | −178.8 (4) |
N3—C6—C7—O3 | 176.1 (3) | C8—C9—C10—C11 | −0.5 (5) |
C5—C6—C7—O3 | −5.4 (4) | C6—N3—C2—C3 | 0.1 (4) |
N3—C6—C7—O4 | −4.8 (4) | C6—N3—C2—C1 | −178.6 (3) |
C5—C6—C7—O4 | 173.7 (3) | C4—C3—C2—N3 | 0.8 (5) |
C13—C8—C9—N2 | 178.7 (3) | C4—C3—C2—C1 | 179.4 (3) |
N1—C8—C9—N2 | −2.8 (4) | O2—C1—C2—N3 | 174.0 (3) |
C13—C8—C9—C10 | 0.4 (4) | O1—C1—C2—N3 | −5.8 (4) |
N1—C8—C9—C10 | 178.9 (3) | O2—C1—C2—C3 | −4.7 (4) |
N3—C6—C5—C4 | 0.2 (5) | O1—C1—C2—C3 | 175.5 (3) |
C7—C6—C5—C4 | −178.1 (3) | C8—C13—C12—C11 | −0.6 (6) |
C9—C8—C13—C12 | 0.2 (5) | C13—C12—C11—C10 | 0.6 (6) |
N1—C8—C13—C12 | −178.4 (3) | C9—C10—C11—C12 | 0.0 (7) |
C2—C3—C4—C5 | −1.2 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1Wi | 0.89 | 2.13 | 3.004 (4) | 166 |
N1—H1B···O3ii | 0.89 | 1.98 | 2.862 (3) | 170 |
N1—H1C···N3 | 0.89 | 2.12 | 3.003 (4) | 171 |
N2—H2A···O1Wiii | 0.90 | 2.41 | 3.303 (4) | 172 |
N2—H2B···O1 | 0.90 | 2.14 | 3.029 (4) | 168 |
O1W—H1WA···O2iv | 0.82 | 2.27 | 3.034 (3) | 155 |
O1W—H1WB···O2 | 0.82 | 2.04 | 2.831 (3) | 161 |
O4—H4···O1i | 0.82 | 1.71 | 2.532 (3) | 179 |
Symmetry codes: (i) x−1/2, −y+1/2, z−1/2; (ii) x+1/2, −y+1/2, z+1/2; (iii) x, y, z−1; (iv) x, −y, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C6H9N2+·C7H4NO4−·H2O |
Mr | 293.28 |
Crystal system, space group | Monoclinic, Cc |
Temperature (K) | 298 |
a, b, c (Å) | 12.408 (3), 13.932 (3), 8.0951 (16) |
β (°) | 102.41 (3) |
V (Å3) | 1366.6 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.30 × 0.25 × 0.15 |
Data collection | |
Diffractometer | Rigaku Mercury2 diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2005) |
Tmin, Tmax | 0.910, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7343, 1555, 1393 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.648 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.117, 1.12 |
No. of reflections | 1555 |
No. of parameters | 191 |
No. of restraints | 2 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.19, −0.22 |
Computer programs: CrystalClear (Rigaku, 2005), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1Wi | 0.89 | 2.13 | 3.004 (4) | 166 |
N1—H1B···O3ii | 0.89 | 1.98 | 2.862 (3) | 170 |
N1—H1C···N3 | 0.89 | 2.12 | 3.003 (4) | 171 |
N2—H2A···O1Wiii | 0.90 | 2.41 | 3.303 (4) | 172 |
N2—H2B···O1 | 0.90 | 2.14 | 3.029 (4) | 168 |
O1W—H1WA···O2iv | 0.82 | 2.27 | 3.034 (3) | 155 |
O1W—H1WB···O2 | 0.82 | 2.04 | 2.831 (3) | 161 |
O4—H4···O1i | 0.82 | 1.71 | 2.532 (3) | 179 |
Symmetry codes: (i) x−1/2, −y+1/2, z−1/2; (ii) x+1/2, −y+1/2, z+1/2; (iii) x, y, z−1; (iv) x, −y, z+1/2. |
Acknowledgements
This work was supported by the start-up fund of Northwest A & F University, China.
References
Andre, V., Fernandes, A., Santos, P. P. & Duarte, M. T. (2011). Cryst. Growth Des. 11, 2325–2334. CAS Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Cocrystals are most commonly thought of as structural homogeneous crystalline materials that contain two or more organic building blocks that are present in definite stoichiometric amounts. Within the development of pharmaceutical industry, molecular cocrystals are becoming increasingly important as a new drug with higher biomedical activity than the initial components. (Kapildev et al. 2011). Physicochemical properties such as the melting point, stability and solubility of an active pharmaceutical ingredient can be tuned through cocrystal formulation (Andre, et al. 2011; Blagden, et al. 2008; Smith, et al. 2000). These cocrystal forms often relie on the acid-amide H-bonds interactions. Herein, we report the crystal structure of the title compound, 2-aminoanilinium 6-carboxypicolinate monohydrate.
The asymmetric unit is composed of one 6-carboxypicolinate anion one 2-aminoanilinium cation and one water molecule (Fig.1). The amine N1 atom was protonated. And one of the carboxyl groups was deprotonated. The interplanar angle between the benzene and the pyridine rings equals to 88.89 (10)°. The geometric parameters of the title compound are in the normal range.
The molecular packing is stabilized by strong intermolecular N—H···O, N—H···N and O—H···O hydrogen bonds. The H-bonds link the molecules into a three-dimensional network (Fig. 2 and Tab. 1).