metal-organic compounds
Dichlorido{2-[(thiophen-2-ylmethyl)iminomethyl]pyridine-κ2N,N′}palladium(II)
aUniversity of the Western Cape, Cape Town, Bellville 7535, South Africa
*Correspondence e-mail: monani@uwc.ac.za
In the title compound, [PdCl2(C11H10N2S)], the PdII ion is four-coordinated in a distorted square-planar environment by two N atoms of the chelating 2-[(thiophen-2-ylmethyl)iminomethyl]pyridine ligand and two chloride anions. The thiophene ring is rotationally disordered over two orientations in a 1:1 ratio. The crystal packing exhibits weak intermolecular C—H⋯Cl and C—H⋯S hydrogen bonds.
Related literature
For the synthesis of iminopyridyl ligands and their transition metal-based complexes, see: Zhang et al. (2006); Bianchini et al. (2010). For related structures, see: Doherty et al. (2002); Ojwach et al. (2009); Motswainyana et al. (2011). For similar structures with nickel, see: Britovsek et al. (2003).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001; Atwood & Barbour, 2003); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536811037214/cv5147sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811037214/cv5147Isup2.hkl
To a solution of [PdCl2(cod)] (0.10 g, 0.35 mmol) in CH2Cl2 (15 ml) was added a solution of 1-phenyl-N-(2-thienylmethyl)methanimine (0.07 g, 0.35 mmol) in CH2Cl2 (5 ml). The solution was stirred for 6 h to give a light yellow precipitate. The precipitate was filtered to obtain a light yellow solid. Recrystallization from a mixture of CH2Cl2: hexane solution afforded single crystals suitable for X-ray analysis. Yield = 0.110 g (85%).
All hydrogen atoms were placed at idealized positions with d(C—H) = 0.95-0.99 Å and refined as riding on their parent atoms, with Uiso (H) = 1.2 – 1.5 Ueq (C). The thiophene ring was treated as rotationally disordered over two orientations in a ratio 1:1.
Nitrogen based ligands have attracted considerable interest due to their stability and various activities (Bianchini et al., 2010; Zhang et al., 2006). These ligands can be complexed to various transition metals to form stable metal complexes which exhibit different colours and geometries (Bianchini et al., 2010; Britovsek et al., 2003; Motswainyana et al., 2011). Herewith we present the crystal stucture of the title compound (I).
The
of (I) contains one molecule of the PdII complex (Fig 1). All bond lengths and angles are normal and comparable with those observed in the related complexes (Zhang et al., 2006; Motswainyana et al., 2011; Doherty et al., 2002). PdII ion has a distorted square planar environment being coordinated by the N,N'-bidentate ligand and two Cl anios. The Pd – Cl bond length trans to the pyridyl N atom is slightly longer than the Pd – Cl bond length trans to the amine N atom showing the stronger trans influence of the pyridyl group compared to the secondary amine.The crystal packing exhibits weak intermolecular C—H···Cl and C—H···S hydrogen bonds (Table 1).
For the synthesis of iminopyridyl ligands and their transition metal-based complexes, see: Zhang et al. (2006); Bianchini et al. (2010). For related structures, see: Doherty et al. (2002); Ojwach et al. (2009); Motswainyana et al. (2011). For similar structures with nickel, see: Britovsek et al. (2003).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001; Atwood & Barbour, 2003); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The molecular structure of (I) showing atomic numbering and 50% probability displacement ellipsoids. For the rotationally disordered thiophene ring only one orientation is shown. |
[PdCl2(C11H10N2S)] | F(000) = 744 |
Mr = 379.57 | Dx = 2.021 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3002 reflections |
a = 8.0061 (19) Å | θ = 2.3–27.6° |
b = 17.768 (4) Å | µ = 2.06 mm−1 |
c = 8.864 (2) Å | T = 100 K |
β = 98.353 (3)° | Plate, yellow |
V = 1247.6 (5) Å3 | 0.24 × 0.19 × 0.06 mm |
Z = 4 |
Bruker SMART APEX CCD area-detector diffractometer | 2656 independent reflections |
Radiation source: fine-focus sealed tube | 2238 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
ω scans | θmax = 27.8°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −9→9 |
Tmin = 0.638, Tmax = 0.887 | k = −22→22 |
6411 measured reflections | l = −11→8 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.144 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.096P)2] where P = (Fo2 + 2Fc2)/3 |
2656 reflections | (Δ/σ)max = 0.017 |
149 parameters | Δρmax = 0.96 e Å−3 |
26 restraints | Δρmin = −0.98 e Å−3 |
[PdCl2(C11H10N2S)] | V = 1247.6 (5) Å3 |
Mr = 379.57 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.0061 (19) Å | µ = 2.06 mm−1 |
b = 17.768 (4) Å | T = 100 K |
c = 8.864 (2) Å | 0.24 × 0.19 × 0.06 mm |
β = 98.353 (3)° |
Bruker SMART APEX CCD area-detector diffractometer | 2656 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2238 reflections with I > 2σ(I) |
Tmin = 0.638, Tmax = 0.887 | Rint = 0.036 |
6411 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 26 restraints |
wR(F2) = 0.144 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.96 e Å−3 |
2656 reflections | Δρmin = −0.98 e Å−3 |
149 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Pd1 | 0.30571 (5) | −0.01089 (2) | 0.58087 (4) | 0.01686 (18) | |
Cl15 | 0.40550 (17) | −0.08117 (7) | 0.79082 (15) | 0.0254 (3) | |
Cl16 | 0.16329 (16) | −0.11300 (7) | 0.46964 (15) | 0.0238 (3) | |
N2 | 0.2291 (5) | 0.0612 (2) | 0.4078 (5) | 0.0179 (9) | |
N9 | 0.4236 (5) | 0.0838 (2) | 0.6682 (5) | 0.0167 (8) | |
C1 | 0.2820 (6) | 0.1286 (3) | 0.4327 (6) | 0.0186 (10) | |
H1 | 0.2521 | 0.1669 | 0.3590 | 0.022* | |
C3 | 0.1145 (6) | 0.0400 (3) | 0.2666 (6) | 0.0211 (10) | |
H3A | 0.1563 | −0.0078 | 0.2285 | 0.025* | |
H3B | 0.0016 | 0.0298 | 0.2950 | 0.025* | |
C10 | 0.3879 (6) | 0.1454 (3) | 0.5747 (6) | 0.0208 (10) | |
C11 | 0.4519 (6) | 0.2153 (3) | 0.6190 (6) | 0.0218 (11) | |
H11 | 0.4243 | 0.2577 | 0.5548 | 0.026* | |
C12 | 0.5564 (7) | 0.2239 (3) | 0.7569 (6) | 0.0225 (11) | |
H12 | 0.6009 | 0.2720 | 0.7881 | 0.027* | |
C13 | 0.5949 (7) | 0.1613 (3) | 0.8484 (6) | 0.0219 (10) | |
H13 | 0.6690 | 0.1653 | 0.9420 | 0.026* | |
C14 | 0.5223 (6) | 0.0922 (3) | 0.8001 (6) | 0.0203 (10) | |
H14 | 0.5449 | 0.0496 | 0.8647 | 0.024* | |
S8A | −0.0145 (4) | 0.1806 (2) | 0.1442 (4) | 0.0239 (7)* | 0.50 |
C4A | 0.095 (2) | 0.0978 (8) | 0.1389 (14) | 0.024 (9)* | 0.50 |
C5A | 0.1525 (17) | 0.0901 (7) | −0.0021 (15) | 0.029 (4)* | 0.50 |
H5A | 0.2128 | 0.0473 | −0.0287 | 0.035* | 0.50 |
C6A | 0.1126 (18) | 0.1522 (8) | −0.1017 (14) | 0.018 (4)* | 0.50 |
H6A | 0.1439 | 0.1564 | −0.2007 | 0.021* | 0.50 |
C7A | 0.0239 (15) | 0.2047 (6) | −0.0361 (13) | 0.016 (3)* | 0.50 |
H7A | −0.0137 | 0.2506 | −0.0848 | 0.019* | 0.50 |
S8B | 0.1827 (5) | 0.07989 (19) | −0.0198 (4) | 0.0248 (8)* | 0.50 |
C4B | 0.093 (3) | 0.0937 (10) | 0.1403 (18) | 0.011 (12)* | 0.50 |
C5B | 0.0011 (15) | 0.1601 (7) | 0.1324 (13) | 0.025 (3)* | 0.50 |
H5B | −0.0583 | 0.1773 | 0.2111 | 0.030* | 0.50 |
C6B | 0.0055 (17) | 0.1999 (8) | −0.0075 (15) | 0.030 (4)* | 0.50 |
H6B | −0.0496 | 0.2466 | −0.0327 | 0.036* | 0.50 |
C7B | 0.098 (2) | 0.1628 (9) | −0.0980 (19) | 0.037 (6)* | 0.50 |
H7B | 0.1144 | 0.1804 | −0.1959 | 0.045* | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd1 | 0.0192 (3) | 0.0166 (3) | 0.0149 (3) | 0.00044 (13) | 0.00286 (17) | 0.00049 (13) |
Cl15 | 0.0346 (7) | 0.0195 (6) | 0.0212 (7) | 0.0002 (5) | 0.0014 (5) | 0.0049 (5) |
Cl16 | 0.0279 (7) | 0.0199 (6) | 0.0233 (7) | −0.0034 (5) | 0.0028 (5) | −0.0032 (5) |
N2 | 0.016 (2) | 0.024 (2) | 0.014 (2) | 0.0025 (17) | 0.0029 (16) | 0.0014 (16) |
N9 | 0.016 (2) | 0.019 (2) | 0.015 (2) | 0.0022 (15) | 0.0009 (16) | 0.0031 (15) |
C1 | 0.022 (3) | 0.020 (2) | 0.014 (2) | 0.0006 (19) | 0.0036 (19) | 0.0013 (18) |
C3 | 0.021 (3) | 0.021 (2) | 0.022 (3) | −0.002 (2) | 0.002 (2) | −0.003 (2) |
C10 | 0.017 (2) | 0.023 (2) | 0.023 (3) | 0.0010 (19) | 0.004 (2) | 0.003 (2) |
C11 | 0.024 (3) | 0.022 (2) | 0.019 (3) | −0.001 (2) | 0.003 (2) | 0.004 (2) |
C12 | 0.028 (3) | 0.018 (2) | 0.021 (3) | 0.000 (2) | 0.005 (2) | −0.0017 (19) |
C13 | 0.023 (3) | 0.027 (3) | 0.015 (2) | −0.002 (2) | −0.0009 (19) | −0.001 (2) |
C14 | 0.021 (3) | 0.019 (2) | 0.022 (3) | −0.0049 (19) | 0.006 (2) | 0.003 (2) |
Pd1—N2 | 2.024 (4) | C13—C14 | 1.400 (7) |
Pd1—N9 | 2.027 (4) | C13—H13 | 0.9500 |
Pd1—Cl15 | 2.2866 (13) | C14—H14 | 0.9500 |
Pd1—Cl16 | 2.2885 (13) | S8A—C4A | 1.715 (13) |
N2—C1 | 1.279 (6) | S8A—C7A | 1.725 (11) |
N2—C3 | 1.489 (6) | C4A—C5A | 1.402 (14) |
N9—C14 | 1.321 (7) | C5A—C6A | 1.420 (14) |
N9—C10 | 1.378 (6) | C5A—H5A | 0.9500 |
C1—C10 | 1.443 (7) | C6A—C7A | 1.354 (14) |
C1—H1 | 0.9500 | C6A—H6A | 0.9500 |
C3—C4B | 1.462 (13) | C7A—H7A | 0.9500 |
C3—C4A | 1.519 (12) | S8B—C4B | 1.698 (14) |
C3—H3A | 0.9900 | S8B—C7B | 1.726 (14) |
C3—H3B | 0.9900 | C4B—C5B | 1.388 (15) |
C10—C11 | 1.379 (7) | C5B—C6B | 1.432 (14) |
C11—C12 | 1.386 (7) | C5B—H5B | 0.9500 |
C11—H11 | 0.9500 | C6B—C7B | 1.340 (15) |
C12—C13 | 1.385 (7) | C6B—H6B | 0.9500 |
C12—H12 | 0.9500 | C7B—H7B | 0.9500 |
N2—Pd1—N9 | 80.64 (16) | C12—C13—C14 | 118.6 (5) |
N2—Pd1—Cl15 | 173.71 (12) | C12—C13—H13 | 120.7 |
N9—Pd1—Cl15 | 93.10 (12) | C14—C13—H13 | 120.7 |
N2—Pd1—Cl16 | 95.62 (13) | N9—C14—C13 | 122.6 (5) |
N9—Pd1—Cl16 | 176.22 (11) | N9—C14—H14 | 118.7 |
Cl15—Pd1—Cl16 | 90.63 (5) | C13—C14—H14 | 118.7 |
C1—N2—C3 | 122.0 (4) | C4A—S8A—C7A | 91.6 (5) |
C1—N2—Pd1 | 113.9 (3) | C5A—C4A—C3 | 125.9 (10) |
C3—N2—Pd1 | 124.0 (3) | C5A—C4A—S8A | 110.1 (9) |
C14—N9—C10 | 119.2 (4) | C3—C4A—S8A | 123.9 (8) |
C14—N9—Pd1 | 128.1 (3) | C4A—C5A—C6A | 113.9 (11) |
C10—N9—Pd1 | 112.7 (3) | C4A—C5A—H5A | 123.2 |
N2—C1—C10 | 118.8 (4) | C6A—C5A—H5A | 122.9 |
N2—C1—H1 | 120.6 | C7A—C6A—C5A | 110.7 (11) |
C10—C1—H1 | 120.6 | C7A—C6A—H6A | 124.7 |
C4B—C3—N2 | 117.9 (10) | C5A—C6A—H6A | 124.7 |
N2—C3—C4A | 116.2 (8) | C6A—C7A—S8A | 113.7 (9) |
C4B—C3—H3A | 108.0 | C6A—C7A—H7A | 123.2 |
N2—C3—H3A | 107.8 | S8A—C7A—H7A | 123.1 |
C4A—C3—H3A | 109.4 | C4B—S8B—C7B | 91.3 (7) |
C4B—C3—H3B | 107.6 | C5B—C4B—C3 | 126.5 (11) |
N2—C3—H3B | 107.8 | C5B—C4B—S8B | 111.5 (9) |
C4A—C3—H3B | 108.1 | C3—C4B—S8B | 122.0 (10) |
H3A—C3—H3B | 107.2 | C4B—C5B—C6B | 112.6 (11) |
N9—C10—C11 | 120.6 (5) | C4B—C5B—H5B | 123.7 |
N9—C10—C1 | 113.9 (4) | C6B—C5B—H5B | 123.7 |
C11—C10—C1 | 125.6 (5) | C7B—C6B—C5B | 111.1 (12) |
C10—C11—C12 | 120.2 (5) | C7B—C6B—H6B | 124.5 |
C10—C11—H11 | 119.9 | C5B—C6B—H6B | 124.4 |
C12—C11—H11 | 119.9 | C6B—C7B—S8B | 113.5 (11) |
C13—C12—C11 | 118.8 (5) | C6B—C7B—H7B | 123.2 |
C13—C12—H12 | 120.6 | S8B—C7B—H7B | 123.2 |
C11—C12—H12 | 120.6 | ||
N9—Pd1—N2—C1 | −1.8 (3) | Pd1—N9—C14—C13 | −179.1 (4) |
Cl16—Pd1—N2—C1 | 177.6 (3) | C12—C13—C14—N9 | 2.5 (8) |
N9—Pd1—N2—C3 | −178.8 (4) | C4B—C3—C4A—C5A | −50 (37) |
Cl16—Pd1—N2—C3 | 0.6 (4) | N2—C3—C4A—C5A | 112.1 (13) |
N2—Pd1—N9—C14 | −179.2 (4) | C4B—C3—C4A—S8A | 126 (39) |
Cl15—Pd1—N9—C14 | 1.4 (4) | N2—C3—C4A—S8A | −71.9 (14) |
N2—Pd1—N9—C10 | 2.5 (3) | C7A—S8A—C4A—C5A | −1.8 (10) |
Cl15—Pd1—N9—C10 | −176.8 (3) | C7A—S8A—C4A—C3 | −178.4 (14) |
C3—N2—C1—C10 | 177.8 (4) | C3—C4A—C5A—C6A | 178.5 (15) |
Pd1—N2—C1—C10 | 0.7 (6) | S8A—C4A—C5A—C6A | 2.0 (13) |
C1—N2—C3—C4B | 13.7 (10) | C4A—C5A—C6A—C7A | −1.0 (14) |
Pd1—N2—C3—C4B | −169.5 (8) | C5A—C6A—C7A—S8A | −0.4 (13) |
C1—N2—C3—C4A | 13.0 (8) | C4A—S8A—C7A—C6A | 1.3 (11) |
Pd1—N2—C3—C4A | −170.2 (6) | N2—C3—C4B—C5B | −74 (2) |
C14—N9—C10—C11 | −1.0 (7) | C4A—C3—C4B—C5B | −56 (37) |
Pd1—N9—C10—C11 | 177.4 (4) | N2—C3—C4B—S8B | 106.1 (15) |
C14—N9—C10—C1 | 178.7 (4) | C4A—C3—C4B—S8B | 124 (39) |
Pd1—N9—C10—C1 | −2.9 (5) | C7B—S8B—C4B—C5B | 0.0 (14) |
N2—C1—C10—N9 | 1.5 (7) | C7B—S8B—C4B—C3 | 179.7 (18) |
N2—C1—C10—C11 | −178.7 (5) | C3—C4B—C5B—C6B | −179.9 (19) |
N9—C10—C11—C12 | 1.5 (8) | S8B—C4B—C5B—C6B | −0.2 (15) |
C1—C10—C11—C12 | −178.2 (5) | C4B—C5B—C6B—C7B | 0.4 (15) |
C10—C11—C12—C13 | 0.0 (8) | C5B—C6B—C7B—S8B | −0.4 (17) |
C11—C12—C13—C14 | −2.0 (8) | C4B—S8B—C7B—C6B | 0.2 (16) |
C10—N9—C14—C13 | −1.0 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12···Cl15i | 0.95 | 2.70 | 3.508 (6) | 143 |
C6B—H6B···Cl16ii | 0.95 | 2.74 | 3.622 (14) | 155 |
C7A—H7A···S8Aiii | 0.95 | 2.69 | 3.468 (12) | 139 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) −x, y+1/2, −z+1/2; (iii) x, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [PdCl2(C11H10N2S)] |
Mr | 379.57 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 8.0061 (19), 17.768 (4), 8.864 (2) |
β (°) | 98.353 (3) |
V (Å3) | 1247.6 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.06 |
Crystal size (mm) | 0.24 × 0.19 × 0.06 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.638, 0.887 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6411, 2656, 2238 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.656 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.144, 1.07 |
No. of reflections | 2656 |
No. of parameters | 149 |
No. of restraints | 26 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.96, −0.98 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001; Atwood & Barbour, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12···Cl15i | 0.95 | 2.70 | 3.508 (6) | 143 |
C6B—H6B···Cl16ii | 0.95 | 2.74 | 3.622 (14) | 155 |
C7A—H7A···S8Aiii | 0.95 | 2.69 | 3.468 (12) | 139 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) −x, y+1/2, −z+1/2; (iii) x, −y+1/2, z−1/2. |
Acknowledgements
We acknowledge financial support from the Botswanan Government (WMM) and the University of the Western Cape Senate Research and NRF (Thuthuka).
References
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Nitrogen based ligands have attracted considerable interest due to their stability and various activities (Bianchini et al., 2010; Zhang et al., 2006). These ligands can be complexed to various transition metals to form stable metal complexes which exhibit different colours and geometries (Bianchini et al., 2010; Britovsek et al., 2003; Motswainyana et al., 2011). Herewith we present the crystal stucture of the title compound (I).
The asymmetric unit of (I) contains one molecule of the PdII complex (Fig 1). All bond lengths and angles are normal and comparable with those observed in the related complexes (Zhang et al., 2006; Motswainyana et al., 2011; Doherty et al., 2002). PdII ion has a distorted square planar environment being coordinated by the N,N'-bidentate ligand and two Cl anios. The Pd – Cl bond length trans to the pyridyl N atom is slightly longer than the Pd – Cl bond length trans to the amine N atom showing the stronger trans influence of the pyridyl group compared to the secondary amine.
The crystal packing exhibits weak intermolecular C—H···Cl and C—H···S hydrogen bonds (Table 1).