organic compounds
(E)-2-(3-Cinnamoylthioureido)acetic acid dimethyl sulfoxide disolvate
aFuel Cell Institute, Universiti Kebangsaan Malaysia, UKM 43600 Bangi Selangor, Malaysia, bDepartment of Chemical and Process Engineering, Faculty of Engineering, Universiti Kebangsaan Malaysia, UKM 43600 Bangi Selangor, Malaysia, and cSchool of Chemical Sciences and Food Technology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, UKM 43600 Bangi Selangor, Malaysia
*Correspondence e-mail: ibnhum@gmail.com
In the title compound, C12H12N2O3S·2C2H6OS, the acetic acid and cinnamoyl groups adopt Z and E configurations, respectively, with respect to the thio group about the C—N bonds. The components of the are connected by N—H⋯O and O—H⋯O hydrogen bonds and in the crystal weak intermolecular C—H⋯O and C—H⋯S hydrogen bonds further connect the components into chains along the b axis. In the main molecule, an intramolecular N—H⋯O hydrogen bond is also present.
Related literature
For related structures, see: Hassan et al. (2009, 2010a,b,c, 2011); Nasir et al. (2011). For the synthesis, see: Hassan et al. (2008). For standard bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
|
Refinement
|
Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996) and SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536811036750/lh5324sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811036750/lh5324Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536811036750/lh5324Isup3.cml
The title compound was synthesized according to a previously reported method (Hassan et al., 2008). A yellowish crystal, suitable for X-ray crystallography, was obtained by a slow evaporation from CH2Cl2 solution at room temperature (yield 79%).
All H atoms were positioned geometrically and allowed to ride on their parent atoms with C—H = 0.93-0.97Å, N—H = 0.86Å and O—H = 0.82Å and with Uiso(H) = 1.2Ueq(C,N) or 1.5Ueq(Cmethyl,O).
The title compound (I) is the thiourea carboxylic acid version of our previously reported ester molecules (E)-methyl-2-(3-cinnamoylthioureido)acetate (II) (Hassan et al., 2010a)and (E)-ethyl-2-(3- cinnmoylthioureido)acetate (III) (Hassan et al., 2010b) and analogous to methyl-2-(3-benzoylthioureido)acetate (IV) (Hassan et al., 2009). The molecule maintains the same E-Z configuration with respect to the positions of the acetic acid and cinnamoyl groups, relative to the S atom across the C—N bonds, respectively (Fig. 1). In general, the bond lengths (Allen et al., 1987) and angles in (I) are in normal ranges and comparable to those in (II), (III) and (IV). The the C═S bond length [1.665 (4) Å] is the same within experimental error to that in (II) [1.666 (3) Å] and that of (III) [1.656 (5) Å]. The C7═C8 bond length [1.331 (6) Å] is slightly longer than that reported by Hassan et al. (2010c) [1.320 (3) Å]. The carbonyl C═O bond length [1.215 (5) Å] is the same within experimental error to that reported by Nasir et al. (2011) [1.213 (3) Å]. The S1/O1/O2/N1/N2/C1—C12 fragment is essentially planar with a maximum deviation of 0.043 (5) Å, for atom C7. In the crystal, the components of the asymmtric unit are connected by N—H···O and O—H···O hydrogen bonds and weak intermolecular C—H···O and C—H···S hydrogen bonds connect the components into one-dimensional chains along the b axis (Fig. 2). In the main molecule an intramolecular N—H···O hydrogen bond is also present.
For related structures, see: Hassan et al. (2009, 2010a,b,c, 2011); Nasir et al. (2011). For the synthesis, see: Hassan et al. (2008). For standard bond-length data, see: Allen et al. (1987).
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996) and SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of (I), with displacement ellipsoids are drawn at the 50% probability level. Hydrogen bonds are shown as dashed lines. | |
Fig. 2. A packing diagram of (I) viewed along the c axis. Hydrogen bonds are shown by dashed lines. |
C12H12N2O3S·2C2H6OS | Z = 2 |
Mr = 420.55 | F(000) = 444 |
Triclinic, P1 | Dx = 1.307 Mg m−3 |
Hall symbol: -P 1 | Melting point: 407 K |
a = 7.327 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 12.064 (5) Å | θ = 1.7–25.0° |
c = 13.691 (6) Å | µ = 0.37 mm−1 |
α = 65.794 (8)° | T = 298 K |
β = 75.603 (9)° | Block, colourless |
γ = 85.484 (9)° | 0.42 × 0.21 × 0.18 mm |
V = 1068.6 (8) Å3 |
Bruker SMART APEX CCD diffractometer | 3774 independent reflections |
Radiation source: fine-focus sealed tube | 2650 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
ω scans | θmax = 25.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −8→8 |
Tmin = 0.859, Tmax = 0.936 | k = −14→14 |
10964 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.085 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.251 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.1544P)2 + 0.4047P] where P = (Fo2 + 2Fc2)/3 |
3774 reflections | (Δ/σ)max < 0.001 |
240 parameters | Δρmax = 0.72 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C12H12N2O3S·2C2H6OS | γ = 85.484 (9)° |
Mr = 420.55 | V = 1068.6 (8) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.327 (3) Å | Mo Kα radiation |
b = 12.064 (5) Å | µ = 0.37 mm−1 |
c = 13.691 (6) Å | T = 298 K |
α = 65.794 (8)° | 0.42 × 0.21 × 0.18 mm |
β = 75.603 (9)° |
Bruker SMART APEX CCD diffractometer | 3774 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2650 reflections with I > 2σ(I) |
Tmin = 0.859, Tmax = 0.936 | Rint = 0.046 |
10964 measured reflections |
R[F2 > 2σ(F2)] = 0.085 | 0 restraints |
wR(F2) = 0.251 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.72 e Å−3 |
3774 reflections | Δρmin = −0.25 e Å−3 |
240 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.4518 (2) | 0.84669 (10) | 0.40846 (9) | 0.0689 (5) | |
S2 | 0.3003 (3) | 1.64039 (11) | 0.16460 (11) | 0.0800 (6) | |
S3 | 0.66629 (18) | 0.58770 (10) | 0.36710 (9) | 0.0580 (4) | |
O1 | 0.6554 (5) | 1.1084 (3) | 0.0515 (2) | 0.0642 (10) | |
O2 | 0.4605 (6) | 1.3125 (3) | 0.1829 (3) | 0.0754 (11) | |
O3 | 0.2971 (6) | 1.3022 (3) | 0.3467 (3) | 0.0697 (11) | |
H3A | 0.3008 | 1.3765 | 0.3147 | 0.105* | |
O4 | 0.2660 (7) | 1.5335 (3) | 0.2747 (3) | 0.0836 (13) | |
O5 | 0.7343 (5) | 0.6780 (3) | 0.2502 (2) | 0.0626 (9) | |
N1 | 0.6120 (5) | 0.9232 (3) | 0.1959 (3) | 0.0457 (9) | |
H1A | 0.6309 | 0.8470 | 0.2128 | 0.055* | |
N2 | 0.4931 (5) | 1.0710 (3) | 0.2566 (3) | 0.0495 (9) | |
H2A | 0.5327 | 1.1210 | 0.1891 | 0.059* | |
C1 | 0.9539 (8) | 0.8304 (6) | −0.1493 (5) | 0.0762 (16) | |
H1 | 0.9122 | 0.7733 | −0.0774 | 0.091* | |
C2 | 1.0432 (9) | 0.7939 (8) | −0.2298 (6) | 0.097 (2) | |
H2 | 1.0635 | 0.7115 | −0.2118 | 0.116* | |
C3 | 1.1037 (10) | 0.8736 (11) | −0.3359 (8) | 0.116 (3) | |
H3 | 1.1623 | 0.8466 | −0.3903 | 0.139* | |
C4 | 1.0773 (10) | 0.9927 (10) | −0.3607 (5) | 0.105 (3) | |
H4 | 1.1197 | 1.0486 | −0.4331 | 0.126* | |
C5 | 0.9890 (8) | 1.0335 (7) | −0.2812 (4) | 0.0843 (18) | |
H5 | 0.9724 | 1.1163 | −0.2998 | 0.101* | |
C6 | 0.9249 (7) | 0.9513 (5) | −0.1739 (4) | 0.0648 (13) | |
C7 | 0.8281 (7) | 0.9974 (5) | −0.0920 (4) | 0.0618 (13) | |
H7A | 0.8061 | 1.0803 | −0.1186 | 0.074* | |
C8 | 0.7671 (7) | 0.9352 (4) | 0.0163 (4) | 0.0608 (13) | |
H8A | 0.7811 | 0.8514 | 0.0475 | 0.073* | |
C9 | 0.6774 (6) | 0.9993 (4) | 0.0869 (3) | 0.0492 (11) | |
C10 | 0.5195 (6) | 0.9548 (4) | 0.2819 (3) | 0.0444 (10) | |
C11 | 0.4015 (7) | 1.1193 (4) | 0.3357 (3) | 0.0491 (11) | |
H11A | 0.4714 | 1.0991 | 0.3921 | 0.059* | |
H11B | 0.2754 | 1.0838 | 0.3711 | 0.059* | |
C12 | 0.3910 (6) | 1.2548 (4) | 0.2786 (3) | 0.0492 (11) | |
C13 | 0.1632 (10) | 1.6099 (7) | 0.0894 (5) | 0.106 (2) | |
H13A | 0.1832 | 1.5281 | 0.0948 | 0.159* | |
H13B | 0.1992 | 1.6657 | 0.0134 | 0.159* | |
H13C | 0.0324 | 1.6191 | 0.1188 | 0.159* | |
C14 | 0.5210 (8) | 1.6206 (5) | 0.0879 (4) | 0.0731 (15) | |
H14A | 0.6180 | 1.6301 | 0.1201 | 0.110* | |
H14B | 0.5404 | 1.6803 | 0.0134 | 0.110* | |
H14C | 0.5254 | 1.5407 | 0.0884 | 0.110* | |
C15 | 0.8192 (9) | 0.6064 (6) | 0.4402 (4) | 0.0790 (16) | |
H15A | 0.9473 | 0.6011 | 0.4033 | 0.118* | |
H15B | 0.7928 | 0.5438 | 0.5136 | 0.118* | |
H15C | 0.8011 | 0.6846 | 0.4436 | 0.118* | |
C16 | 0.7496 (11) | 0.4446 (5) | 0.3663 (5) | 0.093 (2) | |
H16A | 0.6882 | 0.4229 | 0.3220 | 0.139* | |
H16B | 0.7219 | 0.3834 | 0.4403 | 0.139* | |
H16C | 0.8833 | 0.4507 | 0.3360 | 0.139* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.1061 (11) | 0.0398 (7) | 0.0338 (6) | 0.0062 (6) | 0.0081 (6) | −0.0032 (5) |
S2 | 0.1332 (14) | 0.0414 (7) | 0.0428 (7) | 0.0122 (7) | −0.0026 (7) | −0.0070 (6) |
S3 | 0.0743 (8) | 0.0416 (6) | 0.0401 (6) | 0.0072 (5) | −0.0023 (5) | −0.0063 (5) |
O1 | 0.101 (3) | 0.0401 (17) | 0.0329 (16) | 0.0086 (16) | −0.0024 (16) | −0.0054 (13) |
O2 | 0.125 (3) | 0.0399 (17) | 0.0402 (19) | 0.0064 (18) | 0.0049 (19) | −0.0102 (15) |
O3 | 0.115 (3) | 0.0444 (18) | 0.0399 (17) | 0.0144 (19) | −0.0037 (18) | −0.0176 (15) |
O4 | 0.148 (4) | 0.0432 (19) | 0.0376 (18) | 0.017 (2) | 0.000 (2) | −0.0100 (15) |
O5 | 0.100 (3) | 0.0400 (16) | 0.0360 (17) | 0.0079 (16) | −0.0103 (16) | −0.0081 (14) |
N1 | 0.069 (2) | 0.0281 (16) | 0.0323 (17) | 0.0028 (15) | −0.0075 (16) | −0.0075 (14) |
N2 | 0.071 (2) | 0.0331 (18) | 0.0317 (18) | 0.0024 (16) | −0.0019 (16) | −0.0070 (14) |
C1 | 0.076 (4) | 0.087 (4) | 0.063 (3) | 0.011 (3) | −0.005 (3) | −0.036 (3) |
C2 | 0.079 (4) | 0.133 (6) | 0.102 (6) | 0.017 (4) | −0.012 (4) | −0.079 (5) |
C3 | 0.078 (5) | 0.205 (10) | 0.105 (6) | −0.006 (6) | 0.001 (4) | −0.114 (7) |
C4 | 0.087 (5) | 0.180 (9) | 0.043 (3) | −0.043 (5) | 0.013 (3) | −0.049 (5) |
C5 | 0.083 (4) | 0.105 (5) | 0.041 (3) | −0.022 (3) | 0.010 (3) | −0.016 (3) |
C6 | 0.061 (3) | 0.083 (4) | 0.048 (3) | 0.002 (3) | −0.005 (2) | −0.028 (3) |
C7 | 0.080 (3) | 0.057 (3) | 0.040 (2) | 0.002 (2) | −0.005 (2) | −0.016 (2) |
C8 | 0.080 (3) | 0.044 (3) | 0.046 (3) | 0.002 (2) | −0.002 (2) | −0.014 (2) |
C9 | 0.066 (3) | 0.038 (2) | 0.034 (2) | 0.0030 (19) | −0.004 (2) | −0.0099 (18) |
C10 | 0.058 (3) | 0.036 (2) | 0.035 (2) | 0.0030 (18) | −0.0094 (19) | −0.0114 (17) |
C11 | 0.065 (3) | 0.044 (2) | 0.030 (2) | 0.004 (2) | −0.0035 (19) | −0.0121 (18) |
C12 | 0.068 (3) | 0.044 (2) | 0.035 (2) | 0.006 (2) | −0.011 (2) | −0.0163 (19) |
C13 | 0.091 (5) | 0.121 (6) | 0.063 (4) | −0.011 (4) | −0.010 (3) | 0.004 (4) |
C14 | 0.095 (4) | 0.069 (3) | 0.042 (3) | −0.011 (3) | −0.011 (3) | −0.010 (2) |
C15 | 0.097 (4) | 0.079 (4) | 0.049 (3) | 0.020 (3) | −0.015 (3) | −0.019 (3) |
C16 | 0.130 (5) | 0.037 (3) | 0.076 (4) | 0.007 (3) | 0.008 (4) | −0.007 (3) |
S1—C10 | 1.664 (4) | C4—C5 | 1.372 (9) |
S2—O4 | 1.506 (3) | C4—H4 | 0.9300 |
S2—C14 | 1.754 (6) | C5—C6 | 1.378 (7) |
S2—C13 | 1.757 (7) | C5—H5 | 0.9300 |
S3—O5 | 1.501 (3) | C6—C7 | 1.457 (7) |
S3—C15 | 1.758 (6) | C7—C8 | 1.331 (6) |
S3—C16 | 1.789 (6) | C7—H7A | 0.9300 |
O1—C9 | 1.215 (5) | C8—C9 | 1.477 (6) |
O2—C12 | 1.199 (5) | C8—H8A | 0.9300 |
O3—C12 | 1.313 (5) | C11—C12 | 1.500 (6) |
O3—H3A | 0.8200 | C11—H11A | 0.9700 |
N1—C9 | 1.375 (5) | C11—H11B | 0.9700 |
N1—C10 | 1.386 (5) | C13—H13A | 0.9600 |
N1—H1A | 0.8600 | C13—H13B | 0.9600 |
N2—C10 | 1.310 (5) | C13—H13C | 0.9600 |
N2—C11 | 1.434 (5) | C14—H14A | 0.9600 |
N2—H2A | 0.8600 | C14—H14B | 0.9600 |
C1—C2 | 1.353 (8) | C14—H14C | 0.9600 |
C1—C6 | 1.368 (8) | C15—H15A | 0.9600 |
C1—H1 | 0.9300 | C15—H15B | 0.9600 |
C2—C3 | 1.353 (12) | C15—H15C | 0.9600 |
C2—H2 | 0.9300 | C16—H16A | 0.9600 |
C3—C4 | 1.344 (13) | C16—H16B | 0.9600 |
C3—H3 | 0.9300 | C16—H16C | 0.9600 |
O4—S2—C14 | 106.8 (3) | O1—C9—C8 | 123.3 (4) |
O4—S2—C13 | 105.6 (3) | N1—C9—C8 | 113.7 (4) |
C14—S2—C13 | 97.0 (3) | N2—C10—N1 | 116.2 (3) |
O5—S3—C15 | 105.7 (3) | N2—C10—S1 | 124.2 (3) |
O5—S3—C16 | 104.9 (2) | N1—C10—S1 | 119.6 (3) |
C15—S3—C16 | 97.7 (3) | N2—C11—C12 | 109.5 (3) |
C12—O3—H3A | 109.5 | N2—C11—H11A | 109.8 |
C9—N1—C10 | 127.7 (3) | C12—C11—H11A | 109.8 |
C9—N1—H1A | 116.1 | N2—C11—H11B | 109.8 |
C10—N1—H1A | 116.1 | C12—C11—H11B | 109.8 |
C10—N2—C11 | 123.4 (3) | H11A—C11—H11B | 108.2 |
C10—N2—H2A | 118.3 | O2—C12—O3 | 124.4 (4) |
C11—N2—H2A | 118.3 | O2—C12—C11 | 124.1 (4) |
C2—C1—C6 | 119.9 (6) | O3—C12—C11 | 111.5 (4) |
C2—C1—H1 | 120.0 | S2—C13—H13A | 109.5 |
C6—C1—H1 | 120.0 | S2—C13—H13B | 109.5 |
C1—C2—C3 | 122.0 (8) | H13A—C13—H13B | 109.5 |
C1—C2—H2 | 119.0 | S2—C13—H13C | 109.5 |
C3—C2—H2 | 119.0 | H13A—C13—H13C | 109.5 |
C4—C3—C2 | 118.5 (6) | H13B—C13—H13C | 109.5 |
C4—C3—H3 | 120.8 | S2—C14—H14A | 109.5 |
C2—C3—H3 | 120.8 | S2—C14—H14B | 109.5 |
C3—C4—C5 | 121.3 (7) | H14A—C14—H14B | 109.5 |
C3—C4—H4 | 119.4 | S2—C14—H14C | 109.5 |
C5—C4—H4 | 119.4 | H14A—C14—H14C | 109.5 |
C4—C5—C6 | 119.7 (7) | H14B—C14—H14C | 109.5 |
C4—C5—H5 | 120.1 | S3—C15—H15A | 109.5 |
C6—C5—H5 | 120.1 | S3—C15—H15B | 109.5 |
C1—C6—C5 | 118.5 (5) | H15A—C15—H15B | 109.5 |
C1—C6—C7 | 123.1 (5) | S3—C15—H15C | 109.5 |
C5—C6—C7 | 118.4 (5) | H15A—C15—H15C | 109.5 |
C8—C7—C6 | 127.9 (5) | H15B—C15—H15C | 109.5 |
C8—C7—H7A | 116.0 | S3—C16—H16A | 109.5 |
C6—C7—H7A | 116.0 | S3—C16—H16B | 109.5 |
C7—C8—C9 | 119.9 (4) | H16A—C16—H16B | 109.5 |
C7—C8—H8A | 120.0 | S3—C16—H16C | 109.5 |
C9—C8—H8A | 120.0 | H16A—C16—H16C | 109.5 |
O1—C9—N1 | 122.9 (4) | H16B—C16—H16C | 109.5 |
C6—C1—C2—C3 | −0.9 (10) | C10—N1—C9—O1 | −2.1 (8) |
C1—C2—C3—C4 | 1.5 (12) | C10—N1—C9—C8 | −179.0 (4) |
C2—C3—C4—C5 | −0.8 (12) | C7—C8—C9—O1 | −0.2 (8) |
C3—C4—C5—C6 | −0.3 (11) | C7—C8—C9—N1 | 176.6 (4) |
C2—C1—C6—C5 | −0.2 (9) | C11—N2—C10—N1 | −179.4 (4) |
C2—C1—C6—C7 | 179.3 (6) | C11—N2—C10—S1 | −0.1 (7) |
C4—C5—C6—C1 | 0.8 (9) | C9—N1—C10—N2 | −0.9 (7) |
C4—C5—C6—C7 | −178.7 (6) | C9—N1—C10—S1 | 179.8 (4) |
C1—C6—C7—C8 | 5.5 (9) | C10—N2—C11—C12 | −178.7 (4) |
C5—C6—C7—C8 | −175.0 (6) | N2—C11—C12—O2 | −4.4 (7) |
C6—C7—C8—C9 | 177.8 (5) | N2—C11—C12—O3 | 175.8 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O5 | 0.86 | 2.02 | 2.867 (5) | 167 |
N2—H2A···O1 | 0.86 | 1.94 | 2.625 (4) | 136 |
O3—H3A···O4 | 0.82 | 1.76 | 2.562 (5) | 166 |
C14—H14C···O2 | 0.96 | 2.54 | 3.423 (8) | 153 |
C14—H14A···O5i | 0.96 | 2.43 | 3.319 (7) | 154 |
C15—H15B···O4ii | 0.96 | 2.58 | 3.468 (7) | 153 |
C16—H16B···S1iii | 0.96 | 2.85 | 3.702 (7) | 148 |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, −y+2, −z+1; (iii) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C12H12N2O3S·2C2H6OS |
Mr | 420.55 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 7.327 (3), 12.064 (5), 13.691 (6) |
α, β, γ (°) | 65.794 (8), 75.603 (9), 85.484 (9) |
V (Å3) | 1068.6 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.37 |
Crystal size (mm) | 0.42 × 0.21 × 0.18 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.859, 0.936 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10964, 3774, 2650 |
Rint | 0.046 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.085, 0.251, 1.06 |
No. of reflections | 3774 |
No. of parameters | 240 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.72, −0.25 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEPIII (Burnett & Johnson, 1996) and SHELXTL (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O5 | 0.86 | 2.02 | 2.867 (5) | 167.2 |
N2—H2A···O1 | 0.86 | 1.94 | 2.625 (4) | 136.1 |
O3—H3A···O4 | 0.82 | 1.76 | 2.562 (5) | 166.0 |
C14—H14C···O2 | 0.96 | 2.54 | 3.423 (8) | 153 |
C14—H14A···O5i | 0.96 | 2.43 | 3.319 (7) | 154 |
C15—H15B···O4ii | 0.96 | 2.58 | 3.468 (7) | 153 |
C16—H16B···S1iii | 0.96 | 2.85 | 3.702 (7) | 148 |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, −y+2, −z+1; (iii) −x+1, −y+1, −z+1. |
Acknowledgements
The authors thank Universiti Kebangsaan Malaysia for providing facilities and grants (postdoctoral for INH, UKM-GUP-BTT-07–30-190 and UKM-OUP-TK-16–73/2010&2011) and the Kementerian Pengajian Tinggi, Malaysia, for the research fund No. UKM-ST-06-FRGS0111–2009.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CSD CrossRef Web of Science Google Scholar
Bruker (2000). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Burnett, M. N. & Johnson, C. K. (1996). ORTEPIII. Report ORNL-6895. Oak Ridge National Laboratory, Tennessee, USA. Google Scholar
Hassan, I. N., Yamin, B. M. & Kassim, M. B. (2008). Acta Cryst. E64, o1727. Web of Science CSD CrossRef IUCr Journals Google Scholar
Hassan, I. N., Yamin, B. M. & Kassim, M. B. (2009). Acta Cryst. E65, o3078. Web of Science CSD CrossRef IUCr Journals Google Scholar
Hassan, I. N., Yamin, B. M. & Kassim, M. B. (2010a). Acta Cryst. E66, o2242. Web of Science CSD CrossRef IUCr Journals Google Scholar
Hassan, I. N., Yamin, B. M. & Kassim, M. B. (2010b). Acta Cryst. E66, o2784. Web of Science CSD CrossRef IUCr Journals Google Scholar
Hassan, I. N., Yamin, B. M. & Kassim, M. B. (2010c). Acta Cryst. E66, o2796. Web of Science CSD CrossRef IUCr Journals Google Scholar
Hassan, I. N., Yi, C. Y. & Kassim, M. B. (2011). Acta Cryst. E67, o780. Web of Science CSD CrossRef IUCr Journals Google Scholar
Nasir, M. F. M., Hassan, I. N., Wan Daud, W. R., Yamin, B. M. & Kassim, M. B. (2011). Acta Cryst. E67, o1987. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound (I) is the thiourea carboxylic acid version of our previously reported ester molecules (E)-methyl-2-(3-cinnamoylthioureido)acetate (II) (Hassan et al., 2010a)and (E)-ethyl-2-(3- cinnmoylthioureido)acetate (III) (Hassan et al., 2010b) and analogous to methyl-2-(3-benzoylthioureido)acetate (IV) (Hassan et al., 2009). The molecule maintains the same E-Z configuration with respect to the positions of the acetic acid and cinnamoyl groups, relative to the S atom across the C—N bonds, respectively (Fig. 1). In general, the bond lengths (Allen et al., 1987) and angles in (I) are in normal ranges and comparable to those in (II), (III) and (IV). The the C═S bond length [1.665 (4) Å] is the same within experimental error to that in (II) [1.666 (3) Å] and that of (III) [1.656 (5) Å]. The C7═C8 bond length [1.331 (6) Å] is slightly longer than that reported by Hassan et al. (2010c) [1.320 (3) Å]. The carbonyl C═O bond length [1.215 (5) Å] is the same within experimental error to that reported by Nasir et al. (2011) [1.213 (3) Å]. The S1/O1/O2/N1/N2/C1—C12 fragment is essentially planar with a maximum deviation of 0.043 (5) Å, for atom C7. In the crystal, the components of the asymmtric unit are connected by N—H···O and O—H···O hydrogen bonds and weak intermolecular C—H···O and C—H···S hydrogen bonds connect the components into one-dimensional chains along the b axis (Fig. 2). In the main molecule an intramolecular N—H···O hydrogen bond is also present.