organic compounds
4-(6-Chloroimidazo[1,2-b]pyridazin-3-yl)benzonitrile
aFaculty of Pharmacy, Science Road, The University of Sydney, Sydney, Australia
*Correspondence e-mail: yiliang.zhao@sydney.edu.au
In the title compound, C13H7ClN4, the imidazopyridazine ring system is essentially planar [maximum deviation 0.015 (1) Å]. It is inclined to the benzene ring of the benzonitrile group by 11.31 (2)°. In the crystal, molecules are linked via C—H⋯Cl and C—H⋯N interactions.
Related literature
For related structures, see Kia et al. (2009); Khan et al. (2010); Xue (2010); Zhao et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1999); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536811037901/ng5227sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811037901/ng5227Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536811037901/ng5227Isup3.cml
To a thick wall borosilicate glass vial were added 6-Chloro-3-iodo-imidazo[1,2-b]pyridazine (0.05 g, 1.0 equiv.), 4-cyanophenylboronic acid (0.032 g, 1.2 equiv.), Pd(PPh3)4 (0.02 g, 10 mol%), K2CO3 (0.037 g, 1.5 equiv.), and EtOH/H2O (4 : 1, 5 ml). The vial was sealed with a silicon septum and the reaction mixture was pre-stirred for 1 min. The reaction mixture was subjected to microwave irradiation at 90 °C for 14 min at the maximum power of 300 W with sufficient stirring. The reaction mixture was cooled to room temperature and solvent was removed under reduced pressure. The crude product was purified by flash
eluting with ethyl acetate/hexane (1 : 1) to give the titled compound as a bright yellow solid (0.038 g, 83 %).The title compound, C13 H7 Cl1 N4, was newly synthesized, crystallized and analysed at high resolution sin theta/lambda 1.1. The bond lengths are as expected. The crystal packing reveals that in one
every four molecules stack in parallel position by a number of non-classical hydrogen bonds. Hydrogen atoms are fixed at 1.083 A as determined from neutron diffraction, and the temperature factors were refined isotropically.For related structures, see Kia et al. (2009); Khan et al. (2010); Xue (2010); Zhao et al. (2009).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1999); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and publCIF (Westrip, 2010).Fig. 1. , The ORTEP view of the title compound with 50% probability displacement elipsoids for non-H atoms. |
C13H7ClN4 | Dx = 1.500 Mg m−3 |
Mr = 254.68 | Mo Kα radiation, λ = 0.71073 Å |
Tetragonal, I41/a | Cell parameters from 500 reflections |
a = 13.5513 (12) Å | θ = 1.7–62.3° |
c = 24.566 (3) Å | µ = 0.32 mm−1 |
V = 4511.3 (7) Å3 | T = 150 K |
Z = 16 | Block, colourless |
F(000) = 2080 | 0.25 × 0.15 × 0.10 mm |
none |
Bruker SMART APEXII CCD diffractometer | 18107 independent reflections |
Radiation source: fine-focus sealed tube | 11833 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
ω scans | θmax = 62.3°, θmin = 1.7° |
Absorption correction: multi-scan (SAINT; Bruker, 2008) | h = −33→32 |
Tmin = 0.659, Tmax = 0.746 | k = −33→31 |
140841 measured reflections | l = −58→60 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.141 | All H-atom parameters refined |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0756P)2] where P = (Fo2 + 2Fc2)/3 |
18107 reflections | (Δ/σ)max = 0.001 |
191 parameters | Δρmax = 0.85 e Å−3 |
7 restraints | Δρmin = −0.34 e Å−3 |
C13H7ClN4 | Z = 16 |
Mr = 254.68 | Mo Kα radiation |
Tetragonal, I41/a | µ = 0.32 mm−1 |
a = 13.5513 (12) Å | T = 150 K |
c = 24.566 (3) Å | 0.25 × 0.15 × 0.10 mm |
V = 4511.3 (7) Å3 |
Bruker SMART APEXII CCD diffractometer | 18107 independent reflections |
Absorption correction: multi-scan (SAINT; Bruker, 2008) | 11833 reflections with I > 2σ(I) |
Tmin = 0.659, Tmax = 0.746 | Rint = 0.032 |
140841 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 7 restraints |
wR(F2) = 0.141 | All H-atom parameters refined |
S = 1.08 | Δρmax = 0.85 e Å−3 |
18107 reflections | Δρmin = −0.34 e Å−3 |
191 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Reflections -1 11 4, -2 4 0, -5 7 10, 4 4 0, 2 4 2, 1 8 13, -4 8 6, 1 3 16, -2 4 22, -1 10 1, -1 6 1, 0 0 24, -4 6 10, 4 5 11, -2 5 7 were omitted due to bad agreement statistics. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.39217 (3) | 0.36640 (3) | 0.159032 (17) | 0.01678 (5) | |
C2 | 0.37908 (3) | 0.45664 (3) | 0.187490 (19) | 0.01942 (6) | |
C3 | 0.36436 (3) | 0.45225 (3) | 0.242477 (19) | 0.01919 (6) | |
C4 | 0.36372 (3) | 0.35883 (3) | 0.267513 (16) | 0.01652 (5) | |
C5 | 0.35942 (3) | 0.23262 (3) | 0.319699 (16) | 0.01807 (5) | |
C6 | 0.37353 (3) | 0.19353 (3) | 0.267716 (15) | 0.01514 (5) | |
C7 | 0.37986 (3) | 0.09040 (3) | 0.251063 (15) | 0.01514 (5) | |
C8 | 0.38792 (3) | 0.01863 (3) | 0.292379 (18) | 0.01890 (6) | |
C9 | 0.38734 (4) | −0.08101 (3) | 0.27984 (2) | 0.02124 (7) | |
C10 | 0.38037 (3) | −0.11125 (3) | 0.22543 (2) | 0.01965 (6) | |
C11 | 0.37593 (3) | −0.04085 (3) | 0.183904 (18) | 0.01980 (6) | |
C12 | 0.37476 (3) | 0.05927 (3) | 0.196657 (16) | 0.01772 (5) | |
C13 | 0.37580 (4) | −0.21460 (3) | 0.21251 (2) | 0.02413 (8) | |
N1 | 0.37014 (5) | −0.29780 (4) | 0.20267 (3) | 0.03142 (10) | |
N2 | 0.39085 (2) | 0.27773 (2) | 0.179828 (13) | 0.01557 (4) | |
N3 | 0.37627 (2) | 0.27594 (2) | 0.234420 (13) | 0.01445 (4) | |
N4 | 0.35305 (3) | 0.33273 (3) | 0.319431 (15) | 0.01907 (5) | |
Cl1 | 0.413952 (9) | 0.370824 (9) | 0.089725 (5) | 0.02143 (3) | |
H2 | 0.3846 (8) | 0.5243 (4) | 0.1643 (3) | 0.031 (2)* | |
H3 | 0.3542 (7) | 0.5204 (4) | 0.2647 (4) | 0.030 (2)* | |
H5 | 0.3569 (8) | 0.1898 (7) | 0.3569 (2) | 0.034 (3)* | |
H8 | 0.3999 (8) | 0.0435 (7) | 0.33372 (15) | 0.031 (2)* | |
H9 | 0.3914 (7) | −0.1341 (6) | 0.3127 (3) | 0.029 (2)* | |
H11 | 0.3662 (8) | −0.0628 (9) | 0.14188 (16) | 0.042 (3)* | |
H12 | 0.3662 (7) | 0.1155 (5) | 0.1657 (3) | 0.030 (2)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.01593 (12) | 0.01674 (12) | 0.01767 (13) | 0.00052 (9) | −0.00065 (9) | 0.00152 (9) |
C2 | 0.02065 (14) | 0.01551 (12) | 0.02209 (15) | 0.00112 (10) | −0.00169 (11) | 0.00123 (10) |
C3 | 0.02072 (14) | 0.01484 (12) | 0.02199 (15) | 0.00197 (10) | −0.00191 (11) | −0.00164 (10) |
C4 | 0.01706 (12) | 0.01544 (11) | 0.01706 (12) | 0.00196 (9) | −0.00169 (9) | −0.00230 (9) |
C5 | 0.02051 (14) | 0.01867 (13) | 0.01504 (11) | 0.00221 (10) | −0.00118 (10) | −0.00095 (9) |
C6 | 0.01548 (11) | 0.01474 (11) | 0.01520 (11) | 0.00104 (8) | −0.00108 (8) | −0.00048 (8) |
C7 | 0.01486 (11) | 0.01468 (11) | 0.01587 (11) | 0.00048 (8) | −0.00133 (8) | −0.00043 (8) |
C8 | 0.02312 (15) | 0.01589 (12) | 0.01768 (13) | 0.00058 (10) | −0.00269 (11) | 0.00081 (10) |
C9 | 0.02647 (18) | 0.01571 (13) | 0.02155 (15) | 0.00072 (11) | −0.00397 (13) | 0.00104 (11) |
C10 | 0.02066 (14) | 0.01475 (12) | 0.02353 (16) | 0.00046 (10) | −0.00355 (12) | −0.00161 (11) |
C11 | 0.02297 (16) | 0.01711 (13) | 0.01932 (14) | −0.00005 (11) | −0.00236 (11) | −0.00292 (10) |
C12 | 0.02068 (14) | 0.01622 (12) | 0.01625 (12) | −0.00001 (10) | −0.00164 (10) | −0.00097 (9) |
C13 | 0.02702 (19) | 0.01604 (14) | 0.0293 (2) | 0.00087 (12) | −0.00495 (16) | −0.00242 (13) |
N1 | 0.0399 (3) | 0.01696 (15) | 0.0374 (3) | 0.00031 (15) | −0.0067 (2) | −0.00451 (15) |
N2 | 0.01569 (10) | 0.01588 (10) | 0.01514 (9) | 0.00048 (7) | −0.00012 (7) | 0.00018 (7) |
N3 | 0.01422 (9) | 0.01436 (9) | 0.01476 (9) | 0.00097 (7) | −0.00081 (7) | −0.00084 (7) |
N4 | 0.02264 (13) | 0.01842 (12) | 0.01614 (11) | 0.00297 (9) | −0.00162 (9) | −0.00302 (9) |
Cl1 | 0.02372 (5) | 0.02314 (5) | 0.01744 (4) | 0.00047 (3) | 0.00083 (3) | 0.00373 (3) |
C1—N2 | 1.3058 (5) | C7—C12 | 1.4033 (5) |
C1—C2 | 1.4197 (6) | C7—C8 | 1.4100 (6) |
C1—Cl1 | 1.7291 (5) | C8—C9 | 1.3849 (6) |
C2—C3 | 1.3668 (7) | C8—H8 | 1.0824 (10) |
C2—H2 | 1.0819 (10) | C9—C10 | 1.4014 (7) |
C3—C4 | 1.4074 (6) | C9—H9 | 1.0824 (10) |
C3—H3 | 1.0816 (10) | C10—C11 | 1.3980 (7) |
C4—N4 | 1.3315 (6) | C10—C13 | 1.4374 (6) |
C4—N3 | 1.3970 (5) | C11—C12 | 1.3925 (6) |
C5—N4 | 1.3593 (6) | C11—H11 | 1.0825 (10) |
C5—C6 | 1.3957 (5) | C12—H12 | 1.0823 (10) |
C5—H5 | 1.0827 (10) | C13—N1 | 1.1557 (7) |
C6—N3 | 1.3847 (5) | N2—N3 | 1.3558 (5) |
C6—C7 | 1.4588 (5) | ||
N2—C1—C2 | 126.74 (4) | C9—C8—C7 | 120.80 (4) |
N2—C1—Cl1 | 114.80 (3) | C9—C8—H8 | 120.9 (6) |
C2—C1—Cl1 | 118.45 (3) | C7—C8—H8 | 118.2 (6) |
C3—C2—C1 | 117.87 (4) | C8—C9—C10 | 119.84 (4) |
C3—C2—H2 | 124.6 (5) | C8—C9—H9 | 118.8 (6) |
C1—C2—H2 | 117.5 (5) | C10—C9—H9 | 121.4 (6) |
C2—C3—C4 | 118.16 (4) | C11—C10—C9 | 119.96 (4) |
C2—C3—H3 | 118.7 (5) | C11—C10—C13 | 120.14 (4) |
C4—C3—H3 | 123.2 (5) | C9—C10—C13 | 119.89 (4) |
N4—C4—N3 | 110.92 (3) | C12—C11—C10 | 120.08 (4) |
N4—C4—C3 | 131.17 (4) | C12—C11—H11 | 118.7 (7) |
N3—C4—C3 | 117.91 (4) | C10—C11—H11 | 120.9 (7) |
N4—C5—C6 | 112.52 (4) | C11—C12—C7 | 120.44 (4) |
N4—C5—H5 | 122.4 (6) | C11—C12—H12 | 121.9 (5) |
C6—C5—H5 | 125.0 (6) | C7—C12—H12 | 117.6 (5) |
N3—C6—C5 | 103.77 (3) | N1—C13—C10 | 178.50 (7) |
N3—C6—C7 | 127.26 (3) | C1—N2—N3 | 113.92 (3) |
C5—C6—C7 | 128.92 (4) | N2—N3—C6 | 127.06 (3) |
C12—C7—C8 | 118.82 (4) | N2—N3—C4 | 125.38 (3) |
C12—C7—C6 | 123.52 (3) | C6—N3—C4 | 107.54 (3) |
C8—C7—C6 | 117.62 (3) | C4—N4—C5 | 105.24 (3) |
N2—C1—C2—C3 | 0.66 (7) | C8—C7—C12—C11 | 1.11 (6) |
Cl1—C1—C2—C3 | −178.41 (3) | C6—C7—C12—C11 | −176.50 (4) |
C1—C2—C3—C4 | 0.41 (6) | C11—C10—C13—N1 | −112 (3) |
C2—C3—C4—N4 | 178.65 (4) | C9—C10—C13—N1 | 67 (3) |
C2—C3—C4—N3 | −1.24 (6) | C2—C1—N2—N3 | −0.74 (6) |
N4—C5—C6—N3 | 0.34 (5) | Cl1—C1—N2—N3 | 178.35 (3) |
N4—C5—C6—C7 | −177.28 (4) | C1—N2—N3—C6 | −178.44 (4) |
N3—C6—C7—C12 | −10.13 (6) | C1—N2—N3—C4 | −0.23 (5) |
C5—C6—C7—C12 | 166.96 (4) | C5—C6—N3—N2 | 178.38 (3) |
N3—C6—C7—C8 | 172.24 (4) | C7—C6—N3—N2 | −3.94 (6) |
C5—C6—C7—C8 | −10.67 (6) | C5—C6—N3—C4 | −0.09 (4) |
C12—C7—C8—C9 | −2.26 (6) | C7—C6—N3—C4 | 177.58 (4) |
C6—C7—C8—C9 | 175.48 (4) | N4—C4—N3—N2 | −178.70 (4) |
C7—C8—C9—C10 | 1.11 (7) | C3—C4—N3—N2 | 1.21 (6) |
C8—C9—C10—C11 | 1.22 (7) | N4—C4—N3—C6 | −0.19 (4) |
C8—C9—C10—C13 | −177.53 (5) | C3—C4—N3—C6 | 179.72 (4) |
C9—C10—C11—C12 | −2.37 (7) | N3—C4—N4—C5 | 0.39 (5) |
C13—C10—C11—C12 | 176.38 (4) | C3—C4—N4—C5 | −179.51 (4) |
C10—C11—C12—C7 | 1.19 (7) | C6—C5—N4—C4 | −0.46 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···N1i | 1.08 (1) | 2.60 (1) | 3.3502 (7) | 126 (1) |
C3—H3···Cl1ii | 1.08 (1) | 2.70 (1) | 3.7389 (6) | 161 (1) |
C5—H5···N4iii | 1.08 (1) | 2.31 (1) | 3.3341 (7) | 157 (1) |
C8—H8···N4iii | 1.08 (1) | 2.52 (1) | 3.6049 (8) | 177 (1) |
C12—H12···N2 | 1.08 (1) | 2.25 (1) | 2.9975 (6) | 125 (1) |
Symmetry codes: (i) x, y+1, z; (ii) −y+3/4, x+1/4, z+1/4; (iii) −y+3/4, x−1/4, −z+3/4. |
Experimental details
Crystal data | |
Chemical formula | C13H7ClN4 |
Mr | 254.68 |
Crystal system, space group | Tetragonal, I41/a |
Temperature (K) | 150 |
a, c (Å) | 13.5513 (12), 24.566 (3) |
V (Å3) | 4511.3 (7) |
Z | 16 |
Radiation type | Mo Kα |
µ (mm−1) | 0.32 |
Crystal size (mm) | 0.25 × 0.15 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD |
Absorption correction | Multi-scan (SAINT; Bruker, 2008) |
Tmin, Tmax | 0.659, 0.746 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 140841, 18107, 11833 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 1.246 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.141, 1.08 |
No. of reflections | 18107 |
No. of parameters | 191 |
No. of restraints | 7 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.85, −0.34 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1999), SHELXL97 (Sheldrick, 2008) and publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···N1i | 1.082 (6) | 2.597 (6) | 3.3502 (7) | 126.1 (5) |
C3—H3···Cl1ii | 1.081 (7) | 2.701 (8) | 3.7389 (6) | 160.8 (7) |
C5—H5···N4iii | 1.082 (6) | 2.312 (7) | 3.3341 (7) | 156.8 (8) |
C8—H8···N4iii | 1.082 (5) | 2.523 (5) | 3.6049 (8) | 176.7 (8) |
C12—H12···N2 | 1.082 (7) | 2.246 (7) | 2.9975 (6) | 124.8 (5) |
Symmetry codes: (i) x, y+1, z; (ii) −y+3/4, x+1/4, z+1/4; (iii) −y+3/4, x−1/4, −z+3/4. |
Acknowledgements
The authors would like to thank Professor Dai Hibbs from the Faculty of Pharmacy, the University of Sydney, for his kind and generous support of this research project.
References
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The title compound, C13 H7 Cl1 N4, was newly synthesized, crystallized and analysed at high resolution sin theta/lambda 1.1. The bond lengths are as expected. The crystal packing reveals that in one unit cell, every four molecules stack in parallel position by a number of non-classical hydrogen bonds. Hydrogen atoms are fixed at 1.083 A as determined from neutron diffraction, and the temperature factors were refined isotropically.