organic compounds
2-Methyl-3-{2-nitro-1-[2-(prop-2-yn-1-yloxy)phenyl]ethyl}-1H-indole
aDepartment of Physics, RKM Vivekananda College (Autonomous), Chennai 600 004, India, and bOrganic Chemistry Division, Central Leather Research Institute, Adyar, Chennai 600 020, India
*Correspondence e-mail: ksethusankar@yahoo.co.in
In the title compound, C20H18N2O3, the indole unit is essentially planar, with a maximum deviation of 0.0197 (18) Å for the N atom and forms a dihedral angle of 78.09 (9)° with the propyne-subsituted phenyl ring. The propyne group is almost linear, the C—C≡C angle being 176.5 (2)°, and is also in the flagpole position on the O atom. In the crystal, molecules are linked via N—H⋯O and C—H⋯O intermolecular hydrogen bonds involving the nitro-group O atoms as acceptors.
Related literature
For general backround to indoles, see: Gribble (1996); Mathiesen et al. (2005). For related structures, see: Narayanan et al. (2011); Ranjith et al. (2010). For bond-length distortions, see: Allen (1981).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536811036907/rk2291sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811036907/rk2291Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536811036907/rk2291Isup3.cml
To the nitroalkene (1.74 mmol) in water (10 ml) was added KHSO4 (30 mol%) and the mixture was stirred for 5 minutes. 1–Ethyl–indole (1.74 mmol) was added to the mixture and the stirring was continued following the progress of the reaction by TLC. After completion of the reaction, the reaction mixture was extracted with ethyl acetate (3× 10 ml), dried over anhydrous sodium sulfate, filtered, concentrated under reduced pressure and the residue was column chromatographed over silica gel using EtOAc : Petroleum ether (1.5 : 8.5) as
to get the pure product.The hydrogen atoms were placed in calculated positions with C—H = 0.89Å to 0.98Å, N—H = 0.86Å and refined in the riding model with fixed isotropic displacement parameters: Uiso(H) = 1.5Ueq(C)for methyl group and Uiso(H) = 1.2Ueq(C, N) for other groups.
In the crystal, solvent accessible void 42Å3 is found.
Indole is a common motif for drug target and as such, of new diversity–tolerant routes to this previleged biological scaffold continues to be of significant benefit (Gribble, 1996) and forms the basis of a wide variety of drugs, including the anti–inflammatory agent indomethacin, reserpine and sumatriptan. Indole derivatives are identified as interfering with a G protein–independent signalling pathway of the CRTH2 receptor (Mathiesen et al., 2005). As a part of our studies, we report herein the
of the title compound, which comprises the bicycle indole moiety, propyne subsituted phenyl ring and nitro methane group, as illustrated in (Fig. 1).In the title compound, C20H18N2O3, the indole bicycle moiety (C1–C8/N1) is essentially planar with a maximum deviation of -0.0197 (18)Å for N1 atom. The indole moiety (C1–C8/N1) forms a dihedral angle of 78.09 (9)° with the propyne subsituted phenyl ring (C12–C17). In the indole ring system, the dihedral angle between the pyrrole ring (C5–C8/N1) and benzene ring (C1–C6) is 1.17 (10)°.
In the indole moiety, the endocyclic angles at C4 and C6 are contracted to 117.5 (2)° and 118.0 (17)°, respectively, while those at C2, C3 and C5 are expanded to 121.5 (2)°, 121.6 (3)° and 121.2 (3)°, respectively. This would appear to be a real effect caused by the fusion of the smaller pyrrole ring to the six–membered benzene ring, and the strain is taken up by the angular distortion rather than by bond–length distortions (Allen, 1981).
The angles around atom C10: [C7—C10—C12 = 113.88 (13)°, C7—C10—C11 = 110.41 (14)° and C12—C10—C11 = 109.95 (14)°] deviates significantly from ideal tetrahedral values which may be as a result of steric interactions between indole, nitromethane and propyne subsituted phenyl ring. The deviation of atom C10 from the indole moiety is -0.1066 (16)Å. The deviations of atom O3 from the phenyl ring (C12–C17) and propyne group (O3/C18/C19/C20) are 0.0504 (14)Å and 0.3088 (14)Å, respectively.
The oxygen subsituted propyne group is slightly twisted from the phenyl ring (C12–C17) which it is attached as evindenced by the torsion angle C16–C17–O3–C18 = 7.2 (3)°. The propyne group is almost linear, C18–C19≡C20 angle being 176.5 (2)°, and is also in the flagpole position on O3 atom. The title compound exhibits structural similarities with the already reported related structures (Narayanan et al., 2011; Ranjith et al., 2010).
In the crystal packing, molecules are linked via N—H···O and bifurcated C—H···O intermolecular hydrogen bonds involving the nitro group O atoms as acceptors (Table 1). The symmetry codes are: (i) -y+3/4, x-1/4, -z+3/4; (ii) -y+5/4, x-1/4, z-1/4; (iii) y+1/4, -x+5/4, z-3/4. The packing view of the title compound is shown in (Fig. 2).
For general backround to indoles, see: Gribble (1996); Mathiesen et al. (2005). For related structures, see: Narayanan et al. (2011); Ranjith et al. (2010). For bond-length distortions, see: Allen (1981).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C20H18N2O3 | Dx = 1.268 Mg m−3 |
Mr = 334.36 | Mo Kα radiation, λ = 0.71073 Å |
Tetragonal, I41/a | Cell parameters from 3954 reflections |
Hall symbol: -I 4ad | θ = 2.5–27.3° |
a = 23.3474 (7) Å | µ = 0.09 mm−1 |
c = 12.8536 (7) Å | T = 295 K |
V = 7006.5 (5) Å3 | Block, brown |
Z = 16 | 0.30 × 0.25 × 0.20 mm |
F(000) = 2816 |
Bruker Kappa APEXII diffractometer | 2629 reflections with I > 2σ(I) |
Radiation source: fine–focus sealed tube | Rint = 0.034 |
Graphite monochromator | θmax = 27.3°, θmin = 2.5° |
ω and φ scans | h = −30→30 |
31091 measured reflections | k = −30→30 |
3954 independent reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.149 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.061P)2 + 4.4075P] where P = (Fo2 + 2Fc2)/3 |
3954 reflections | (Δ/σ)max = 0.001 |
231 parameters | Δρmax = 0.35 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
C20H18N2O3 | Z = 16 |
Mr = 334.36 | Mo Kα radiation |
Tetragonal, I41/a | µ = 0.09 mm−1 |
a = 23.3474 (7) Å | T = 295 K |
c = 12.8536 (7) Å | 0.30 × 0.25 × 0.20 mm |
V = 7006.5 (5) Å3 |
Bruker Kappa APEXII diffractometer | 2629 reflections with I > 2σ(I) |
31091 measured reflections | Rint = 0.034 |
3954 independent reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.149 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.35 e Å−3 |
3954 reflections | Δρmin = −0.30 e Å−3 |
231 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.57180 (8) | 0.58359 (8) | 0.28887 (15) | 0.0561 (5) | |
H1 | 0.6050 | 0.5907 | 0.2511 | 0.067* | |
C2 | 0.54456 (11) | 0.62723 (10) | 0.34038 (18) | 0.0739 (6) | |
H2 | 0.5595 | 0.6641 | 0.3365 | 0.089* | |
C3 | 0.49531 (12) | 0.61764 (12) | 0.39812 (19) | 0.0837 (7) | |
H3 | 0.4784 | 0.6480 | 0.4335 | 0.100* | |
C4 | 0.47114 (10) | 0.56413 (12) | 0.40392 (16) | 0.0746 (6) | |
H4 | 0.4379 | 0.5577 | 0.4421 | 0.090* | |
C5 | 0.49805 (8) | 0.52014 (9) | 0.35072 (14) | 0.0567 (5) | |
C6 | 0.54906 (7) | 0.52835 (8) | 0.29372 (12) | 0.0471 (4) | |
C7 | 0.56448 (7) | 0.47343 (7) | 0.25110 (12) | 0.0456 (4) | |
C8 | 0.52332 (8) | 0.43530 (9) | 0.28289 (14) | 0.0574 (5) | |
C9 | 0.51646 (12) | 0.37274 (10) | 0.2625 (2) | 0.0854 (7) | |
H9A | 0.4937 | 0.3559 | 0.3167 | 0.128* | |
H9B | 0.5535 | 0.3548 | 0.2610 | 0.128* | |
H9C | 0.4978 | 0.3673 | 0.1967 | 0.128* | |
C10 | 0.61764 (7) | 0.45897 (7) | 0.19019 (12) | 0.0461 (4) | |
H10 | 0.6150 | 0.4185 | 0.1703 | 0.055* | |
C11 | 0.67081 (8) | 0.46567 (9) | 0.25835 (14) | 0.0556 (5) | |
H11A | 0.7049 | 0.4568 | 0.2182 | 0.067* | |
H11B | 0.6738 | 0.5049 | 0.2826 | 0.067* | |
C12 | 0.62457 (7) | 0.49375 (7) | 0.09048 (12) | 0.0466 (4) | |
C13 | 0.66337 (9) | 0.53799 (9) | 0.07902 (15) | 0.0608 (5) | |
H13 | 0.6877 | 0.5469 | 0.1339 | 0.073* | |
C14 | 0.66695 (11) | 0.56947 (10) | −0.01207 (17) | 0.0747 (6) | |
H14 | 0.6936 | 0.5989 | −0.0182 | 0.090* | |
C15 | 0.63101 (11) | 0.55691 (10) | −0.09283 (17) | 0.0741 (6) | |
H15 | 0.6327 | 0.5785 | −0.1536 | 0.089* | |
C16 | 0.59234 (10) | 0.51273 (9) | −0.08517 (14) | 0.0627 (5) | |
H16 | 0.5681 | 0.5044 | −0.1406 | 0.075* | |
C17 | 0.58959 (8) | 0.48052 (8) | 0.00541 (13) | 0.0486 (4) | |
C18 | 0.52168 (9) | 0.41607 (9) | −0.06941 (14) | 0.0626 (5) | |
H18A | 0.5476 | 0.4081 | −0.1266 | 0.075* | |
H18B | 0.4952 | 0.4458 | −0.0912 | 0.075* | |
C19 | 0.49038 (9) | 0.36474 (10) | −0.04196 (16) | 0.0655 (5) | |
C20 | 0.46475 (12) | 0.32315 (15) | −0.0253 (2) | 0.0902 (8) | |
N1 | 0.48348 (7) | 0.46368 (8) | 0.34151 (12) | 0.0659 (5) | |
H1A | 0.4536 | 0.4482 | 0.3687 | 0.079* | |
N2 | 0.66652 (9) | 0.42633 (9) | 0.34832 (17) | 0.0796 (6) | |
O1 | 0.66570 (12) | 0.44706 (10) | 0.43438 (16) | 0.1362 (10) | |
O2 | 0.66138 (13) | 0.37606 (8) | 0.3327 (2) | 0.1423 (10) | |
O3 | 0.55338 (6) | 0.43482 (6) | 0.01938 (9) | 0.0586 (4) | |
H20 | 0.4442 (13) | 0.2919 (12) | −0.011 (2) | 0.118 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0576 (11) | 0.0581 (11) | 0.0526 (10) | 0.0033 (9) | −0.0041 (9) | 0.0056 (9) |
C2 | 0.0856 (16) | 0.0634 (13) | 0.0727 (14) | 0.0126 (11) | −0.0077 (12) | 0.0021 (11) |
C3 | 0.0949 (18) | 0.0863 (17) | 0.0700 (15) | 0.0366 (14) | −0.0004 (13) | −0.0033 (13) |
C4 | 0.0628 (13) | 0.1061 (19) | 0.0551 (12) | 0.0235 (13) | 0.0091 (10) | 0.0114 (12) |
C5 | 0.0506 (10) | 0.0771 (13) | 0.0423 (9) | 0.0048 (9) | −0.0010 (8) | 0.0119 (9) |
C6 | 0.0461 (9) | 0.0606 (10) | 0.0346 (8) | 0.0030 (8) | −0.0055 (7) | 0.0109 (7) |
C7 | 0.0482 (9) | 0.0536 (10) | 0.0351 (8) | −0.0032 (7) | −0.0042 (7) | 0.0098 (7) |
C8 | 0.0602 (11) | 0.0666 (12) | 0.0453 (9) | −0.0122 (9) | −0.0003 (8) | 0.0121 (9) |
C9 | 0.1018 (18) | 0.0704 (15) | 0.0841 (16) | −0.0319 (13) | 0.0091 (14) | 0.0090 (12) |
C10 | 0.0505 (9) | 0.0473 (9) | 0.0405 (8) | 0.0002 (7) | −0.0030 (7) | 0.0045 (7) |
C11 | 0.0536 (10) | 0.0630 (11) | 0.0503 (10) | 0.0055 (9) | −0.0033 (8) | 0.0066 (9) |
C12 | 0.0496 (9) | 0.0515 (9) | 0.0387 (8) | 0.0034 (7) | 0.0057 (7) | 0.0033 (7) |
C13 | 0.0667 (12) | 0.0661 (12) | 0.0497 (10) | −0.0107 (9) | 0.0081 (9) | 0.0049 (9) |
C14 | 0.0923 (16) | 0.0709 (14) | 0.0610 (13) | −0.0162 (12) | 0.0210 (12) | 0.0106 (11) |
C15 | 0.1057 (18) | 0.0701 (13) | 0.0466 (11) | 0.0043 (12) | 0.0202 (11) | 0.0167 (10) |
C16 | 0.0816 (14) | 0.0664 (12) | 0.0400 (10) | 0.0116 (11) | 0.0039 (9) | 0.0073 (9) |
C17 | 0.0527 (10) | 0.0539 (10) | 0.0392 (8) | 0.0083 (8) | 0.0044 (7) | 0.0031 (7) |
C18 | 0.0674 (12) | 0.0758 (13) | 0.0447 (10) | 0.0065 (10) | −0.0129 (9) | −0.0074 (9) |
C19 | 0.0575 (12) | 0.0849 (15) | 0.0542 (11) | 0.0005 (11) | −0.0083 (9) | −0.0130 (11) |
C20 | 0.0810 (17) | 0.109 (2) | 0.0808 (17) | −0.0283 (17) | −0.0087 (13) | −0.0050 (16) |
N1 | 0.0560 (9) | 0.0874 (12) | 0.0542 (9) | −0.0139 (9) | 0.0098 (8) | 0.0156 (9) |
N2 | 0.0929 (14) | 0.0688 (12) | 0.0771 (13) | −0.0006 (10) | −0.0388 (11) | 0.0223 (10) |
O1 | 0.211 (3) | 0.1348 (18) | 0.0629 (11) | −0.0503 (17) | −0.0414 (14) | 0.0353 (12) |
O2 | 0.209 (3) | 0.0599 (11) | 0.158 (2) | 0.0096 (13) | −0.0778 (19) | 0.0308 (12) |
O3 | 0.0645 (8) | 0.0686 (8) | 0.0428 (7) | −0.0091 (6) | −0.0115 (6) | 0.0054 (6) |
C1—C2 | 1.371 (3) | C11—H11A | 0.9700 |
C1—C6 | 1.396 (3) | C11—H11B | 0.9700 |
C1—H1 | 0.9300 | C12—C13 | 1.382 (3) |
C2—C3 | 1.387 (3) | C12—C17 | 1.399 (2) |
C2—H2 | 0.9300 | C13—C14 | 1.385 (3) |
C3—C4 | 1.373 (4) | C13—H13 | 0.9300 |
C3—H3 | 0.9300 | C14—C15 | 1.367 (3) |
C4—C5 | 1.384 (3) | C14—H14 | 0.9300 |
C4—H4 | 0.9300 | C15—C16 | 1.374 (3) |
C5—N1 | 1.367 (3) | C15—H15 | 0.9300 |
C5—C6 | 1.411 (2) | C16—C17 | 1.387 (2) |
C6—C7 | 1.440 (3) | C16—H16 | 0.9300 |
C7—C8 | 1.372 (2) | C17—O3 | 1.373 (2) |
C7—C10 | 1.506 (2) | C18—O3 | 1.429 (2) |
C8—N1 | 1.368 (3) | C18—C19 | 1.447 (3) |
C8—C9 | 1.492 (3) | C18—H18A | 0.9700 |
C9—H9A | 0.9600 | C18—H18B | 0.9700 |
C9—H9B | 0.9600 | C19—C20 | 1.160 (4) |
C9—H9C | 0.9600 | C20—H20 | 0.89 (3) |
C10—C12 | 1.526 (2) | N1—H1A | 0.8600 |
C10—C11 | 1.528 (2) | N2—O2 | 1.197 (3) |
C10—H10 | 0.9800 | N2—O1 | 1.208 (3) |
C11—N2 | 1.480 (3) | ||
C2—C1—C6 | 119.24 (19) | C10—C11—H11A | 109.8 |
C2—C1—H1 | 120.4 | N2—C11—H11B | 109.8 |
C6—C1—H1 | 120.4 | C10—C11—H11B | 109.8 |
C1—C2—C3 | 121.5 (2) | H11A—C11—H11B | 108.3 |
C1—C2—H2 | 119.2 | C13—C12—C17 | 117.67 (16) |
C3—C2—H2 | 119.2 | C13—C12—C10 | 123.84 (16) |
C4—C3—C2 | 121.1 (2) | C17—C12—C10 | 118.49 (15) |
C4—C3—H3 | 119.4 | C12—C13—C14 | 121.8 (2) |
C2—C3—H3 | 119.4 | C12—C13—H13 | 119.1 |
C3—C4—C5 | 117.5 (2) | C14—C13—H13 | 119.1 |
C3—C4—H4 | 121.3 | C15—C14—C13 | 119.4 (2) |
C5—C4—H4 | 121.3 | C15—C14—H14 | 120.3 |
N1—C5—C4 | 130.19 (19) | C13—C14—H14 | 120.3 |
N1—C5—C6 | 107.22 (17) | C14—C15—C16 | 120.67 (19) |
C4—C5—C6 | 122.6 (2) | C14—C15—H15 | 119.7 |
C1—C6—C5 | 118.00 (17) | C16—C15—H15 | 119.7 |
C1—C6—C7 | 135.28 (16) | C15—C16—C17 | 119.8 (2) |
C5—C6—C7 | 106.71 (16) | C15—C16—H16 | 120.1 |
C8—C7—C6 | 106.82 (16) | C17—C16—H16 | 120.1 |
C8—C7—C10 | 125.92 (17) | O3—C17—C16 | 124.02 (17) |
C6—C7—C10 | 127.11 (15) | O3—C17—C12 | 115.38 (14) |
N1—C8—C7 | 109.02 (18) | C16—C17—C12 | 120.60 (18) |
N1—C8—C9 | 119.85 (18) | O3—C18—C19 | 108.69 (16) |
C7—C8—C9 | 131.1 (2) | O3—C18—H18A | 110.0 |
C8—C9—H9A | 109.5 | C19—C18—H18A | 110.0 |
C8—C9—H9B | 109.5 | O3—C18—H18B | 110.0 |
H9A—C9—H9B | 109.5 | C19—C18—H18B | 110.0 |
C8—C9—H9C | 109.5 | H18A—C18—H18B | 108.3 |
H9A—C9—H9C | 109.5 | C20—C19—C18 | 176.5 (2) |
H9B—C9—H9C | 109.5 | C19—C20—H20 | 178 (2) |
C7—C10—C12 | 113.88 (13) | C5—N1—C8 | 110.22 (15) |
C7—C10—C11 | 110.41 (14) | C5—N1—H1A | 124.9 |
C12—C10—C11 | 109.95 (14) | C8—N1—H1A | 124.9 |
C7—C10—H10 | 107.4 | O2—N2—O1 | 123.0 (2) |
C12—C10—H10 | 107.4 | O2—N2—C11 | 119.0 (2) |
C11—C10—H10 | 107.4 | O1—N2—C11 | 117.9 (2) |
N2—C11—C10 | 109.25 (15) | C17—O3—C18 | 116.90 (14) |
N2—C11—H11A | 109.8 | ||
C6—C1—C2—C3 | 0.7 (3) | C7—C10—C12—C13 | 105.5 (2) |
C1—C2—C3—C4 | −1.5 (4) | C11—C10—C12—C13 | −19.0 (2) |
C2—C3—C4—C5 | 0.5 (3) | C7—C10—C12—C17 | −74.2 (2) |
C3—C4—C5—N1 | −179.0 (2) | C11—C10—C12—C17 | 161.27 (16) |
C3—C4—C5—C6 | 1.3 (3) | C17—C12—C13—C14 | 1.7 (3) |
C2—C1—C6—C5 | 1.0 (3) | C10—C12—C13—C14 | −178.07 (18) |
C2—C1—C6—C7 | 179.47 (19) | C12—C13—C14—C15 | 0.4 (3) |
N1—C5—C6—C1 | 178.18 (15) | C13—C14—C15—C16 | −1.3 (4) |
C4—C5—C6—C1 | −2.0 (3) | C14—C15—C16—C17 | 0.1 (3) |
N1—C5—C6—C7 | −0.71 (19) | C15—C16—C17—O3 | −178.42 (18) |
C4—C5—C6—C7 | 179.09 (17) | C15—C16—C17—C12 | 2.1 (3) |
C1—C6—C7—C8 | −178.48 (19) | C13—C12—C17—O3 | 177.55 (16) |
C5—C6—C7—C8 | 0.12 (18) | C10—C12—C17—O3 | −2.7 (2) |
C1—C6—C7—C10 | 5.8 (3) | C13—C12—C17—C16 | −2.9 (3) |
C5—C6—C7—C10 | −175.64 (15) | C10—C12—C17—C16 | 176.84 (16) |
C6—C7—C8—N1 | 0.52 (19) | C4—C5—N1—C8 | −178.7 (2) |
C10—C7—C8—N1 | 176.34 (15) | C6—C5—N1—C8 | 1.1 (2) |
C6—C7—C8—C9 | 179.6 (2) | C7—C8—N1—C5 | −1.0 (2) |
C10—C7—C8—C9 | −4.6 (3) | C9—C8—N1—C5 | 179.79 (18) |
C8—C7—C10—C12 | 125.70 (18) | C10—C11—N2—O2 | 58.0 (3) |
C6—C7—C10—C12 | −59.3 (2) | C10—C11—N2—O1 | −118.6 (2) |
C8—C7—C10—C11 | −110.05 (19) | C16—C17—O3—C18 | 7.2 (3) |
C6—C7—C10—C11 | 64.9 (2) | C12—C17—O3—C18 | −173.23 (16) |
C7—C10—C11—N2 | 60.3 (2) | C19—C18—O3—C17 | 174.73 (16) |
C12—C10—C11—N2 | −173.18 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2i | 0.86 | 2.14 | 2.997 (2) | 173 |
C11—H11A···O1ii | 0.97 | 2.52 | 3.433 (3) | 157 |
C15—H15···O1iii | 0.93 | 2.57 | 3.315 (3) | 137 |
Symmetry codes: (i) −y+3/4, x−1/4, −z+3/4; (ii) −y+5/4, x−1/4, z−1/4; (iii) y+1/4, −x+5/4, z−3/4. |
Experimental details
Crystal data | |
Chemical formula | C20H18N2O3 |
Mr | 334.36 |
Crystal system, space group | Tetragonal, I41/a |
Temperature (K) | 295 |
a, c (Å) | 23.3474 (7), 12.8536 (7) |
V (Å3) | 7006.5 (5) |
Z | 16 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.30 × 0.25 × 0.20 |
Data collection | |
Diffractometer | Bruker Kappa APEXII |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 31091, 3954, 2629 |
Rint | 0.034 |
(sin θ/λ)max (Å−1) | 0.646 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.149, 1.03 |
No. of reflections | 3954 |
No. of parameters | 231 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.35, −0.30 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and Mercury (Macrae et al., 2008), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2i | 0.86 | 2.14 | 2.997 (2) | 172.6 |
C11—H11A···O1ii | 0.97 | 2.52 | 3.433 (3) | 156.5 |
C15—H15···O1iii | 0.93 | 2.57 | 3.315 (3) | 137.2 |
Symmetry codes: (i) −y+3/4, x−1/4, −z+3/4; (ii) −y+5/4, x−1/4, z−1/4; (iii) y+1/4, −x+5/4, z−3/4. |
Acknowledgements
PN and KS thank Dr Babu Varghese, SAIF, IIT, Chennai, India, for the X–ray intensity data collection and Dr V. Murugan, Head of the Department of Physics, for providing facilities in the department to carry out this work.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Indole is a common motif for drug target and as such, of new diversity–tolerant routes to this previleged biological scaffold continues to be of significant benefit (Gribble, 1996) and forms the basis of a wide variety of drugs, including the anti–inflammatory agent indomethacin, reserpine and sumatriptan. Indole derivatives are identified as interfering with a G protein–independent signalling pathway of the CRTH2 receptor (Mathiesen et al., 2005). As a part of our studies, we report herein the crystal structure of the title compound, which comprises the bicycle indole moiety, propyne subsituted phenyl ring and nitro methane group, as illustrated in (Fig. 1).
In the title compound, C20H18N2O3, the indole bicycle moiety (C1–C8/N1) is essentially planar with a maximum deviation of -0.0197 (18)Å for N1 atom. The indole moiety (C1–C8/N1) forms a dihedral angle of 78.09 (9)° with the propyne subsituted phenyl ring (C12–C17). In the indole ring system, the dihedral angle between the pyrrole ring (C5–C8/N1) and benzene ring (C1–C6) is 1.17 (10)°.
In the indole moiety, the endocyclic angles at C4 and C6 are contracted to 117.5 (2)° and 118.0 (17)°, respectively, while those at C2, C3 and C5 are expanded to 121.5 (2)°, 121.6 (3)° and 121.2 (3)°, respectively. This would appear to be a real effect caused by the fusion of the smaller pyrrole ring to the six–membered benzene ring, and the strain is taken up by the angular distortion rather than by bond–length distortions (Allen, 1981).
The angles around atom C10: [C7—C10—C12 = 113.88 (13)°, C7—C10—C11 = 110.41 (14)° and C12—C10—C11 = 109.95 (14)°] deviates significantly from ideal tetrahedral values which may be as a result of steric interactions between indole, nitromethane and propyne subsituted phenyl ring. The deviation of atom C10 from the indole moiety is -0.1066 (16)Å. The deviations of atom O3 from the phenyl ring (C12–C17) and propyne group (O3/C18/C19/C20) are 0.0504 (14)Å and 0.3088 (14)Å, respectively.
The oxygen subsituted propyne group is slightly twisted from the phenyl ring (C12–C17) which it is attached as evindenced by the torsion angle C16–C17–O3–C18 = 7.2 (3)°. The propyne group is almost linear, C18–C19≡C20 angle being 176.5 (2)°, and is also in the flagpole position on O3 atom. The title compound exhibits structural similarities with the already reported related structures (Narayanan et al., 2011; Ranjith et al., 2010).
In the crystal packing, molecules are linked via N—H···O and bifurcated C—H···O intermolecular hydrogen bonds involving the nitro group O atoms as acceptors (Table 1). The symmetry codes are: (i) -y+3/4, x-1/4, -z+3/4; (ii) -y+5/4, x-1/4, z-1/4; (iii) y+1/4, -x+5/4, z-3/4. The packing view of the title compound is shown in (Fig. 2).