organic compounds
(E)-2-[1-(1-Benzothiophen-2-yl)ethylidene]-N-phenylhydrazinecarboxamide
aSchool of Chemical Sciences and Food Technology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM, Bangi, Selangor, Malaysia, and bDepartment of Chemistry, University of Otago, PO Box 56, Dunedin 9054, New Zealand
*Correspondence e-mail: safaafaris@yahoo.com
The title compound, C17H15N3OS, crystallizes with two unique molecules, denoted 1 and 2, in the The two molecules are closely similar and overlay with an r.m.s. deviation of 0.053 Å. Both molecules adopt E configurations with respect to the C=N bonds. The dihedral angles between the benzothiophene groups and N-bound phenyl rings are 36.36 (9)° for molecule 1 and 29.71 (9)° for molecule 2. The C=N—NH—C(O)NH ethylidene–hydrazinecarboxamide units are also reasonably planar, with r.m.s. deviations of 0.061 and 0.056 Å, respectively, for the two molecules. The methyl substituents lie 0.338 (3) and 0.396 (3) Å, respectively, from these planes. The C=N—NH—C(O)NH planes are inclined to the phenyl rings at 13.65 (11) and 15.56 (11)°, respectively, in molecules 1 and 2. This conformation is enhanced by weak intramolecular C—H⋯O hydrogen bonds between ortho-H atoms of the two phenyl rings and the carbonyl O atoms, which generate S(6) rings in each molecule. In the crystal, pairs of molecules are linked by pairs of intermolecular N—H⋯O hydrogen bonds into dimers. Alternating dimers are further interconnected by weak C—H⋯O contacts into zigzag rows along b. The rows are stacked along a by C—H⋯π contacts involving the benzene ring from molecule 2 and the thiophene ring from molecule 1 of adjacent benzothiophene units.
Related literature
For background to the biological activity of et al. (2010); Sharma et al. (2006); Siji et al. (2010); Sriram et al. (2004). For related structures, see: Beraldo et al. (2001); Fun et al. (2009a,b); Mendoza-Meroño et al. (2011). For graph-set analysis of hydrogen bonding, see: Bernstein et al. (1995).
see: AlamExperimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell APEX2 and SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008) and TITAN2000 (Hunter & Simpson, 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) and TITAN2000; molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97, enCIFer (Allen et al., 2004), PLATON (Spek, 2009) and publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536811037457/tk2786sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811037457/tk2786Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536811037457/tk2786Isup3.cml
4-Phenyl-3-semicarbazide (1.51 g, 10 mmol) was dissolved in boiling ethanol (40 ml). A solution of 2-acetylbenzothiophene (1.77 g, 10 mmol) in ethanol (30 ml) was added to the 4-phenylsemicarbazide solution followed by the addition of three drops of sulphuric acid. The mixture was heated under reflux with stirring for 2 h. The solid product which separated upon cooling was filtered and recrystallized from a 1:1 mixture of dimethylsulphoxide and ethanol.
H atoms bound to N1 and N3 were located in an
and their coordinates were refined freely with Uiso= 1.2Ueq (N). All H-atoms bound to carbon were refined using a riding model with d(C—H) = 0.95 Å, Uiso=1.2Ueq (C) for aromatic and 0.98 Å, Uiso = 1.5Ueq (C) for the CH3 H atoms.Semicarbazones are of considerable interest because of their wide spectrum of biological applications, and display anticonvulsant (Alam et al., 2010), antitubercular (Sriram et al., 2004) and antimicrobial activity (Siji et al., 2010). The biological activity of
is considered to be due to their ability to form chelate complexes with transition metals (Sharma et al., 2006).In view of the importance of these compounds, we report here the structure of the title semicarbazone derivative (Fig. 1).The
of the title compound contains two molecules, 1 and 2. The benzothiophene group and the C9=N1—N2—C11(O1)N3 semicarbazone units are almost coplanar with N1—C9—C1—S1 torsion angles of -13.0 (2)° for 1 and -9.3 (2)° for 2. The phenyl rings show somewhat greater coplanarity with the semicarbazone linking units the C11—N3—C12—C13 angles being -13.3 (3)° for 1 and 5.4 (3)° for 2. The dihedral angles between the benzothiophene groups and the phenyl rings are 36.36 (7)° for 1 and 29.71 (8)° for 2. Both molecules adopt E configurations with respect to the C=N bonds. There are no important differences in the bond lengths and angles between the two unique molecules which overlay with an r.m.s. deviation of 0.053 Å (Macrae et al., 2008). The bond distances and angles are in a good agreement with values reported for similar structures (Beraldo et al., 2001; Fun et al., 2009a,b; Mendoza-Meroño et al. 2011). Intramolecular C113–H113···O11 and C113–H113···O11 hydrogen bonds are observed in both molecules and generate S(6) rings (Bernstein et al. 1995).In the π contacts to the S11, C11, C12, C13, C18 thiophene rings of adjacent molecules form stacks along a, (Fig. 3).
intermolecular N12—H12N···O21 and N22—H22N···O11 hydrogen bonds (Table 1) link the molecules into dimers (Fig. 2). A weak C110—H11A..O21 interaction further strengthens the dimer unit for molecule 1. Alternating dimers are further interconnected by weak C15–H15···O11 contacts generating zigzag rows along b. C24—H24..For background to the biological activity of
see: Alam et al. (2010); Sharma et al. (2006); Siji et al. (2010); Sriram et al. (2004). For related structures, see: Beraldo et al. (2001); Fun et al. (2009a,b); Mendoza-Meroño et al. (2011). For graph-set analysis of hydrogen bonding, see: Bernstein et al. (1995).Data collection: APEX2 (Bruker, 2009); cell
APEX2 (Bruker, 2009) and SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008) and TITAN2000 (Hunter & Simpson, 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) and TITAN2000 (Hunter & Simpson, 1999); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008), enCIFer (Allen et al., 2004), PLATON (Spek, 2009) and publCIF (Westrip, 2010).Fig. 1. The asymmetric unit of the title compound with ellipsoids drawn at the 50% probability level. | |
Fig. 2. Dimers formed by the two unique molecules.Hydrogen bonds are shown as dashed lines. | |
Fig. 3. Crystal packing with hydrogen bonds drawn as dashed lines. |
C17H15N3OS | Z = 4 |
Mr = 309.38 | F(000) = 648 |
Triclinic, P1 | Dx = 1.388 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.8858 (3) Å | Cell parameters from 3121 reflections |
b = 13.2737 (5) Å | θ = 2.3–24.7° |
c = 13.6121 (8) Å | µ = 0.22 mm−1 |
α = 113.961 (3)° | T = 89 K |
β = 98.153 (3)° | Rectangular plate, colourless |
γ = 107.778 (2)° | 0.38 × 0.14 × 0.05 mm |
V = 1480.02 (11) Å3 |
Bruker APEXII CCD area-detector diffractometer | 8650 independent reflections |
Radiation source: fine-focus sealed tube | 5747 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.052 |
ω scans | θmax = 30.1°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −13→13 |
Tmin = 0.826, Tmax = 1.000 | k = −18→18 |
25263 measured reflections | l = −19→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.147 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0651P)2 + 0.0525P] where P = (Fo2 + 2Fc2)/3 |
8650 reflections | (Δ/σ)max < 0.001 |
411 parameters | Δρmax = 0.70 e Å−3 |
0 restraints | Δρmin = −0.37 e Å−3 |
C17H15N3OS | γ = 107.778 (2)° |
Mr = 309.38 | V = 1480.02 (11) Å3 |
Triclinic, P1 | Z = 4 |
a = 9.8858 (3) Å | Mo Kα radiation |
b = 13.2737 (5) Å | µ = 0.22 mm−1 |
c = 13.6121 (8) Å | T = 89 K |
α = 113.961 (3)° | 0.38 × 0.14 × 0.05 mm |
β = 98.153 (3)° |
Bruker APEXII CCD area-detector diffractometer | 8650 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 5747 reflections with I > 2σ(I) |
Tmin = 0.826, Tmax = 1.000 | Rint = 0.052 |
25263 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.147 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.70 e Å−3 |
8650 reflections | Δρmin = −0.37 e Å−3 |
411 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S11 | 0.31292 (6) | 1.02673 (4) | 0.78076 (4) | 0.02141 (13) | |
C11 | 0.2261 (2) | 0.93460 (17) | 0.63600 (16) | 0.0182 (4) | |
C12 | 0.1846 (2) | 0.99340 (18) | 0.58266 (17) | 0.0199 (4) | |
H12 | 0.1351 | 0.9563 | 0.5041 | 0.024* | |
C13 | 0.2253 (2) | 1.11904 (17) | 0.66052 (16) | 0.0180 (4) | |
C14 | 0.2057 (2) | 1.20934 (18) | 0.63901 (18) | 0.0223 (4) | |
H14 | 0.1568 | 1.1906 | 0.5647 | 0.027* | |
C15 | 0.2576 (2) | 1.32550 (19) | 0.72612 (18) | 0.0251 (5) | |
H15 | 0.2451 | 1.3866 | 0.7112 | 0.030* | |
C16 | 0.3287 (2) | 1.35423 (18) | 0.83629 (18) | 0.0240 (4) | |
H16 | 0.3640 | 1.4347 | 0.8951 | 0.029* | |
C17 | 0.3481 (2) | 1.26718 (18) | 0.86079 (17) | 0.0221 (4) | |
H17 | 0.3952 | 1.2866 | 0.9358 | 0.027* | |
C18 | 0.2966 (2) | 1.14948 (18) | 0.77204 (17) | 0.0201 (4) | |
C19 | 0.2066 (2) | 0.80832 (17) | 0.58560 (16) | 0.0181 (4) | |
C110 | 0.1043 (2) | 0.72127 (18) | 0.46823 (16) | 0.0237 (4) | |
H11A | 0.1562 | 0.6766 | 0.4240 | 0.035* | |
H11B | 0.0740 | 0.7653 | 0.4328 | 0.035* | |
H11C | 0.0157 | 0.6649 | 0.4710 | 0.035* | |
N11 | 0.28160 (17) | 0.78150 (14) | 0.64940 (13) | 0.0190 (3) | |
N12 | 0.26205 (18) | 0.66309 (15) | 0.60819 (14) | 0.0200 (4) | |
H12N | 0.193 (2) | 0.6052 (19) | 0.5336 (18) | 0.024* | |
C111 | 0.3580 (2) | 0.63400 (17) | 0.66381 (16) | 0.0189 (4) | |
O11 | 0.34514 (15) | 0.52858 (12) | 0.62557 (11) | 0.0231 (3) | |
N13 | 0.46505 (19) | 0.72820 (15) | 0.75850 (14) | 0.0212 (4) | |
H13N | 0.460 (2) | 0.798 (2) | 0.7734 (18) | 0.025* | |
C112 | 0.5902 (2) | 0.72786 (18) | 0.82322 (16) | 0.0200 (4) | |
C113 | 0.6083 (2) | 0.62516 (19) | 0.81270 (19) | 0.0298 (5) | |
H113 | 0.5327 | 0.5479 | 0.7611 | 0.036* | |
C114 | 0.7391 (3) | 0.6363 (2) | 0.8788 (2) | 0.0356 (6) | |
H114 | 0.7524 | 0.5656 | 0.8703 | 0.043* | |
C115 | 0.8490 (2) | 0.74708 (19) | 0.95598 (17) | 0.0246 (4) | |
H115 | 0.9372 | 0.7532 | 1.0007 | 0.030* | |
C116 | 0.8291 (2) | 0.84825 (19) | 0.96713 (17) | 0.0277 (5) | |
H116 | 0.9038 | 0.9253 | 1.0205 | 0.033* | |
C117 | 0.7008 (2) | 0.83968 (19) | 0.90140 (18) | 0.0300 (5) | |
H117 | 0.6887 | 0.9108 | 0.9100 | 0.036* | |
S21 | 0.10557 (5) | −0.03449 (5) | 0.26492 (4) | 0.02144 (13) | |
C21 | 0.2802 (2) | 0.07844 (17) | 0.35461 (15) | 0.0183 (4) | |
C22 | 0.3828 (2) | 0.03329 (17) | 0.37642 (16) | 0.0172 (4) | |
H22 | 0.4829 | 0.0820 | 0.4238 | 0.021* | |
C23 | 0.3203 (2) | −0.09632 (18) | 0.31879 (16) | 0.0195 (4) | |
C24 | 0.3903 (2) | −0.17387 (18) | 0.31967 (17) | 0.0229 (4) | |
H24 | 0.4920 | −0.1417 | 0.3625 | 0.027* | |
C25 | 0.3106 (2) | −0.29689 (19) | 0.25799 (17) | 0.0248 (4) | |
H25 | 0.3577 | −0.3494 | 0.2583 | 0.030* | |
C26 | 0.1598 (2) | −0.34491 (19) | 0.19454 (17) | 0.0247 (4) | |
H26 | 0.1062 | −0.4297 | 0.1523 | 0.030* | |
C27 | 0.0886 (2) | −0.27078 (18) | 0.19275 (17) | 0.0233 (4) | |
H27 | −0.0134 | −0.3038 | 0.1502 | 0.028* | |
C28 | 0.1692 (2) | −0.14626 (18) | 0.25469 (16) | 0.0193 (4) | |
C29 | 0.3002 (2) | 0.20465 (18) | 0.40077 (16) | 0.0191 (4) | |
C210 | 0.4392 (2) | 0.30265 (18) | 0.49234 (16) | 0.0228 (4) | |
H21A | 0.4728 | 0.3703 | 0.4764 | 0.034* | |
H21B | 0.5173 | 0.2720 | 0.4956 | 0.034* | |
H21C | 0.4186 | 0.3298 | 0.5649 | 0.034* | |
N21 | 0.18945 (18) | 0.22163 (14) | 0.35750 (13) | 0.0202 (4) | |
N22 | 0.19800 (19) | 0.33747 (15) | 0.40139 (14) | 0.0225 (4) | |
H22N | 0.261 (2) | 0.388 (2) | 0.4711 (19) | 0.027* | |
C211 | 0.0935 (2) | 0.36293 (18) | 0.34891 (16) | 0.0207 (4) | |
O21 | 0.09507 (17) | 0.46410 (13) | 0.38988 (12) | 0.0291 (4) | |
N23 | −0.00679 (18) | 0.26752 (15) | 0.25064 (14) | 0.0203 (4) | |
H23N | 0.005 (2) | 0.201 (2) | 0.2342 (18) | 0.024* | |
C212 | −0.1117 (2) | 0.26998 (18) | 0.17048 (16) | 0.0198 (4) | |
C213 | −0.1193 (2) | 0.37503 (19) | 0.17685 (17) | 0.0238 (4) | |
H213 | −0.0578 | 0.4508 | 0.2406 | 0.029* | |
C214 | −0.2185 (2) | 0.3675 (2) | 0.08827 (18) | 0.0287 (5) | |
H214 | −0.2228 | 0.4393 | 0.0915 | 0.034* | |
C215 | −0.3112 (2) | 0.25807 (19) | −0.00446 (17) | 0.0254 (5) | |
H215 | −0.3781 | 0.2544 | −0.0645 | 0.030* | |
C216 | −0.3048 (2) | 0.15487 (19) | −0.00818 (18) | 0.0297 (5) | |
H216 | −0.3685 | 0.0791 | −0.0711 | 0.036* | |
C217 | −0.2063 (2) | 0.15971 (19) | 0.07875 (17) | 0.0270 (5) | |
H217 | −0.2038 | 0.0875 | 0.0755 | 0.032* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S11 | 0.0247 (3) | 0.0198 (3) | 0.0174 (3) | 0.0095 (2) | 0.0014 (2) | 0.0079 (2) |
C11 | 0.0149 (9) | 0.0197 (10) | 0.0162 (10) | 0.0056 (8) | 0.0016 (7) | 0.0072 (8) |
C12 | 0.0156 (9) | 0.0264 (11) | 0.0246 (11) | 0.0092 (8) | 0.0068 (8) | 0.0175 (9) |
C13 | 0.0146 (9) | 0.0204 (10) | 0.0204 (10) | 0.0076 (8) | 0.0056 (7) | 0.0106 (8) |
C14 | 0.0181 (9) | 0.0284 (11) | 0.0273 (11) | 0.0108 (9) | 0.0081 (8) | 0.0181 (10) |
C15 | 0.0233 (10) | 0.0234 (11) | 0.0344 (12) | 0.0106 (9) | 0.0091 (9) | 0.0179 (10) |
C16 | 0.0242 (10) | 0.0192 (10) | 0.0279 (11) | 0.0118 (9) | 0.0076 (9) | 0.0085 (9) |
C17 | 0.0208 (10) | 0.0242 (11) | 0.0217 (10) | 0.0107 (9) | 0.0064 (8) | 0.0101 (9) |
C18 | 0.0179 (9) | 0.0236 (10) | 0.0217 (10) | 0.0097 (8) | 0.0053 (8) | 0.0126 (9) |
C19 | 0.0161 (9) | 0.0199 (10) | 0.0166 (9) | 0.0067 (8) | 0.0057 (7) | 0.0072 (8) |
C110 | 0.0255 (10) | 0.0209 (10) | 0.0196 (10) | 0.0084 (9) | 0.0013 (8) | 0.0077 (9) |
N11 | 0.0190 (8) | 0.0154 (8) | 0.0192 (8) | 0.0058 (7) | 0.0046 (7) | 0.0065 (7) |
N12 | 0.0219 (9) | 0.0159 (8) | 0.0167 (8) | 0.0064 (7) | 0.0006 (7) | 0.0054 (7) |
C111 | 0.0181 (9) | 0.0190 (10) | 0.0142 (9) | 0.0046 (8) | 0.0008 (7) | 0.0066 (8) |
O11 | 0.0287 (8) | 0.0139 (7) | 0.0172 (7) | 0.0068 (6) | −0.0029 (6) | 0.0035 (6) |
N13 | 0.0250 (9) | 0.0142 (8) | 0.0180 (9) | 0.0091 (7) | −0.0022 (7) | 0.0039 (7) |
C112 | 0.0215 (10) | 0.0221 (10) | 0.0132 (9) | 0.0091 (8) | 0.0020 (8) | 0.0063 (8) |
C113 | 0.0295 (12) | 0.0174 (10) | 0.0288 (12) | 0.0068 (9) | −0.0057 (9) | 0.0055 (9) |
C114 | 0.0383 (13) | 0.0270 (12) | 0.0319 (13) | 0.0187 (11) | −0.0051 (10) | 0.0064 (10) |
C115 | 0.0231 (10) | 0.0307 (12) | 0.0180 (10) | 0.0124 (9) | 0.0029 (8) | 0.0097 (9) |
C116 | 0.0242 (11) | 0.0255 (11) | 0.0193 (11) | 0.0023 (9) | −0.0041 (8) | 0.0070 (9) |
C117 | 0.0320 (12) | 0.0183 (11) | 0.0265 (12) | 0.0069 (9) | −0.0064 (9) | 0.0061 (9) |
S21 | 0.0167 (2) | 0.0221 (3) | 0.0208 (3) | 0.0069 (2) | 0.00048 (19) | 0.0083 (2) |
C21 | 0.0158 (9) | 0.0215 (10) | 0.0134 (9) | 0.0058 (8) | 0.0021 (7) | 0.0066 (8) |
C22 | 0.0146 (9) | 0.0168 (9) | 0.0165 (9) | 0.0046 (7) | 0.0052 (7) | 0.0057 (8) |
C23 | 0.0162 (9) | 0.0224 (10) | 0.0168 (10) | 0.0068 (8) | 0.0037 (7) | 0.0076 (8) |
C24 | 0.0168 (9) | 0.0274 (11) | 0.0228 (11) | 0.0101 (9) | 0.0051 (8) | 0.0099 (9) |
C25 | 0.0256 (11) | 0.0264 (11) | 0.0251 (11) | 0.0152 (9) | 0.0074 (9) | 0.0113 (9) |
C26 | 0.0244 (11) | 0.0212 (11) | 0.0223 (11) | 0.0063 (9) | 0.0053 (8) | 0.0075 (9) |
C27 | 0.0216 (10) | 0.0245 (11) | 0.0188 (10) | 0.0067 (9) | 0.0019 (8) | 0.0090 (9) |
C28 | 0.0192 (9) | 0.0231 (10) | 0.0154 (9) | 0.0088 (8) | 0.0046 (8) | 0.0088 (8) |
C29 | 0.0190 (9) | 0.0234 (10) | 0.0173 (10) | 0.0095 (8) | 0.0078 (8) | 0.0104 (8) |
C210 | 0.0207 (10) | 0.0242 (11) | 0.0179 (10) | 0.0072 (9) | 0.0030 (8) | 0.0075 (9) |
N21 | 0.0248 (9) | 0.0180 (8) | 0.0154 (8) | 0.0088 (7) | 0.0044 (7) | 0.0061 (7) |
N22 | 0.0244 (9) | 0.0187 (9) | 0.0146 (8) | 0.0083 (7) | −0.0023 (7) | 0.0019 (7) |
C211 | 0.0213 (10) | 0.0197 (10) | 0.0152 (10) | 0.0059 (8) | 0.0009 (8) | 0.0062 (8) |
O21 | 0.0336 (9) | 0.0218 (8) | 0.0188 (8) | 0.0127 (7) | −0.0054 (6) | 0.0009 (6) |
N23 | 0.0224 (8) | 0.0167 (8) | 0.0165 (9) | 0.0082 (7) | −0.0003 (7) | 0.0049 (7) |
C212 | 0.0189 (9) | 0.0213 (10) | 0.0160 (10) | 0.0064 (8) | 0.0021 (8) | 0.0081 (8) |
C213 | 0.0245 (10) | 0.0223 (11) | 0.0197 (10) | 0.0087 (9) | 0.0012 (8) | 0.0079 (9) |
C214 | 0.0308 (12) | 0.0301 (12) | 0.0303 (12) | 0.0173 (10) | 0.0054 (10) | 0.0166 (10) |
C215 | 0.0237 (10) | 0.0325 (12) | 0.0194 (10) | 0.0127 (9) | 0.0021 (8) | 0.0123 (9) |
C216 | 0.0280 (11) | 0.0238 (12) | 0.0215 (11) | 0.0049 (9) | −0.0059 (9) | 0.0050 (9) |
C217 | 0.0295 (11) | 0.0203 (11) | 0.0220 (11) | 0.0068 (9) | −0.0027 (9) | 0.0077 (9) |
S11—C18 | 1.734 (2) | S21—C28 | 1.745 (2) |
S11—C11 | 1.7427 (19) | S21—C21 | 1.7473 (19) |
C11—C12 | 1.369 (2) | C21—C22 | 1.381 (2) |
C11—C19 | 1.466 (3) | C21—C29 | 1.466 (3) |
C12—C13 | 1.449 (3) | C22—C23 | 1.440 (3) |
C12—H12 | 0.9500 | C22—H22 | 0.9500 |
C13—C14 | 1.404 (3) | C23—C24 | 1.407 (3) |
C13—C18 | 1.410 (3) | C23—C28 | 1.410 (3) |
C14—C15 | 1.380 (3) | C24—C25 | 1.380 (3) |
C14—H14 | 0.9500 | C24—H24 | 0.9500 |
C15—C16 | 1.400 (3) | C25—C26 | 1.408 (3) |
C15—H15 | 0.9500 | C25—H25 | 0.9500 |
C16—C17 | 1.383 (3) | C26—C27 | 1.379 (3) |
C16—H16 | 0.9500 | C26—H26 | 0.9500 |
C17—C18 | 1.402 (3) | C27—C28 | 1.397 (3) |
C17—H17 | 0.9500 | C27—H27 | 0.9500 |
C19—N11 | 1.289 (2) | C29—N21 | 1.293 (2) |
C19—C110 | 1.496 (3) | C29—C210 | 1.497 (3) |
C110—H11A | 0.9800 | C210—H21A | 0.9800 |
C110—H11B | 0.9800 | C210—H21B | 0.9800 |
C110—H11C | 0.9800 | C210—H21C | 0.9800 |
N11—N12 | 1.375 (2) | N21—N22 | 1.374 (2) |
N12—C111 | 1.371 (2) | N22—C211 | 1.376 (2) |
N12—H12N | 0.97 (2) | N22—H22N | 0.89 (2) |
C111—O11 | 1.235 (2) | C211—O21 | 1.221 (2) |
C111—N13 | 1.357 (2) | C211—N23 | 1.363 (2) |
N13—C112 | 1.416 (2) | N23—C212 | 1.413 (2) |
N13—H13N | 0.89 (2) | N23—H23N | 0.87 (2) |
C112—C113 | 1.382 (3) | C212—C217 | 1.387 (3) |
C112—C117 | 1.388 (3) | C212—C213 | 1.388 (3) |
C113—C114 | 1.396 (3) | C213—C214 | 1.390 (3) |
C113—H113 | 0.9500 | C213—H213 | 0.9500 |
C114—C115 | 1.376 (3) | C214—C215 | 1.383 (3) |
C114—H114 | 0.9500 | C214—H214 | 0.9500 |
C115—C116 | 1.368 (3) | C215—C216 | 1.372 (3) |
C115—H115 | 0.9500 | C215—H215 | 0.9500 |
C116—C117 | 1.389 (3) | C216—C217 | 1.387 (3) |
C116—H116 | 0.9500 | C216—H216 | 0.9500 |
C117—H117 | 0.9500 | C217—H217 | 0.9500 |
C18—S11—C11 | 91.28 (9) | C28—S21—C21 | 91.28 (9) |
C12—C11—C19 | 127.84 (18) | C22—C21—C29 | 128.03 (17) |
C12—C11—S11 | 113.22 (15) | C22—C21—S21 | 112.81 (14) |
C19—C11—S11 | 118.94 (14) | C29—C21—S21 | 119.10 (14) |
C11—C12—C13 | 111.86 (18) | C21—C22—C23 | 112.03 (17) |
C11—C12—H12 | 124.1 | C21—C22—H22 | 124.0 |
C13—C12—H12 | 124.1 | C23—C22—H22 | 124.0 |
C14—C13—C18 | 118.69 (18) | C24—C23—C28 | 119.07 (18) |
C14—C13—C12 | 129.36 (18) | C24—C23—C22 | 128.48 (18) |
C18—C13—C12 | 111.93 (17) | C28—C23—C22 | 112.45 (17) |
C15—C14—C13 | 119.85 (19) | C25—C24—C23 | 119.75 (18) |
C15—C14—H14 | 120.1 | C25—C24—H24 | 120.1 |
C13—C14—H14 | 120.1 | C23—C24—H24 | 120.1 |
C14—C15—C16 | 120.69 (19) | C24—C25—C26 | 120.27 (19) |
C14—C15—H15 | 119.7 | C24—C25—H25 | 119.9 |
C16—C15—H15 | 119.7 | C26—C25—H25 | 119.9 |
C17—C16—C15 | 121.00 (19) | C27—C26—C25 | 121.06 (19) |
C17—C16—H16 | 119.5 | C27—C26—H26 | 119.5 |
C15—C16—H16 | 119.5 | C25—C26—H26 | 119.5 |
C16—C17—C18 | 118.25 (19) | C26—C27—C28 | 118.75 (18) |
C16—C17—H17 | 120.9 | C26—C27—H27 | 120.6 |
C18—C17—H17 | 120.9 | C28—C27—H27 | 120.6 |
C17—C18—C13 | 121.51 (18) | C27—C28—C23 | 121.10 (18) |
C17—C18—S11 | 126.77 (15) | C27—C28—S21 | 127.46 (15) |
C13—C18—S11 | 111.71 (15) | C23—C28—S21 | 111.44 (15) |
N11—C19—C11 | 115.21 (17) | N21—C29—C21 | 114.78 (17) |
N11—C19—C110 | 124.97 (18) | N21—C29—C210 | 124.63 (18) |
C11—C19—C110 | 119.82 (16) | C21—C29—C210 | 120.58 (17) |
C19—C110—H11A | 109.5 | C29—C210—H21A | 109.5 |
C19—C110—H11B | 109.5 | C29—C210—H21B | 109.5 |
H11A—C110—H11B | 109.5 | H21A—C210—H21B | 109.5 |
C19—C110—H11C | 109.5 | C29—C210—H21C | 109.5 |
H11A—C110—H11C | 109.5 | H21A—C210—H21C | 109.5 |
H11B—C110—H11C | 109.5 | H21B—C210—H21C | 109.5 |
C19—N11—N12 | 117.57 (16) | C29—N21—N22 | 117.60 (16) |
C111—N12—N11 | 119.32 (16) | N21—N22—C211 | 119.89 (16) |
C111—N12—H12N | 121.2 (13) | N21—N22—H22N | 115.3 (14) |
N11—N12—H12N | 118.4 (13) | C211—N22—H22N | 123.5 (14) |
O11—C111—N13 | 124.78 (17) | O21—C211—N23 | 124.92 (18) |
O11—C111—N12 | 120.06 (17) | O21—C211—N22 | 120.69 (18) |
N13—C111—N12 | 115.14 (17) | N23—C211—N22 | 114.39 (18) |
C111—N13—C112 | 127.34 (17) | C211—N23—C212 | 127.10 (17) |
C111—N13—H13N | 113.6 (14) | C211—N23—H23N | 113.9 (14) |
C112—N13—H13N | 118.4 (14) | C212—N23—H23N | 118.6 (14) |
C113—C112—C117 | 119.18 (18) | C217—C212—C213 | 119.81 (18) |
C113—C112—N13 | 124.47 (18) | C217—C212—N23 | 116.38 (18) |
C117—C112—N13 | 116.35 (18) | C213—C212—N23 | 123.75 (18) |
C112—C113—C114 | 119.2 (2) | C212—C213—C214 | 118.85 (19) |
C112—C113—H113 | 120.4 | C212—C213—H213 | 120.6 |
C114—C113—H113 | 120.4 | C214—C213—H213 | 120.6 |
C115—C114—C113 | 121.6 (2) | C215—C214—C213 | 121.6 (2) |
C115—C114—H114 | 119.2 | C215—C214—H214 | 119.2 |
C113—C114—H114 | 119.2 | C213—C214—H214 | 119.2 |
C116—C115—C114 | 118.76 (19) | C216—C215—C214 | 118.77 (19) |
C116—C115—H115 | 120.6 | C216—C215—H215 | 120.6 |
C114—C115—H115 | 120.6 | C214—C215—H215 | 120.6 |
C115—C116—C117 | 120.8 (2) | C215—C216—C217 | 120.9 (2) |
C115—C116—H116 | 119.6 | C215—C216—H216 | 119.6 |
C117—C116—H116 | 119.6 | C217—C216—H216 | 119.6 |
C112—C117—C116 | 120.4 (2) | C216—C217—C212 | 120.05 (19) |
C112—C117—H117 | 119.8 | C216—C217—H217 | 120.0 |
C116—C117—H117 | 119.8 | C212—C217—H217 | 120.0 |
C18—S11—C11—C12 | −0.58 (16) | C28—S21—C21—C22 | −0.23 (15) |
C18—S11—C11—C19 | 178.95 (16) | C28—S21—C21—C29 | −177.63 (16) |
C19—C11—C12—C13 | −178.81 (18) | C29—C21—C22—C23 | 177.56 (18) |
S11—C11—C12—C13 | 0.7 (2) | S21—C21—C22—C23 | 0.4 (2) |
C11—C12—C13—C14 | 178.41 (19) | C21—C22—C23—C24 | 179.47 (19) |
C11—C12—C13—C18 | −0.4 (2) | C21—C22—C23—C28 | −0.5 (2) |
C18—C13—C14—C15 | 0.8 (3) | C28—C23—C24—C25 | 0.1 (3) |
C12—C13—C14—C15 | −177.90 (19) | C22—C23—C24—C25 | −179.82 (19) |
C13—C14—C15—C16 | −0.6 (3) | C23—C24—C25—C26 | −0.1 (3) |
C14—C15—C16—C17 | −0.2 (3) | C24—C25—C26—C27 | −0.2 (3) |
C15—C16—C17—C18 | 0.8 (3) | C25—C26—C27—C28 | 0.5 (3) |
C16—C17—C18—C13 | −0.6 (3) | C26—C27—C28—C23 | −0.5 (3) |
C16—C17—C18—S11 | 177.95 (15) | C26—C27—C28—S21 | 179.33 (15) |
C14—C13—C18—C17 | −0.2 (3) | C24—C23—C28—C27 | 0.2 (3) |
C12—C13—C18—C17 | 178.72 (17) | C22—C23—C28—C27 | −179.86 (17) |
C14—C13—C18—S11 | −178.98 (14) | C24—C23—C28—S21 | −179.65 (15) |
C12—C13—C18—S11 | 0.0 (2) | C22—C23—C28—S21 | 0.3 (2) |
C11—S11—C18—C17 | −178.33 (19) | C21—S21—C28—C27 | −179.87 (19) |
C11—S11—C18—C13 | 0.33 (15) | C21—S21—C28—C23 | −0.05 (15) |
C12—C11—C19—N11 | 166.45 (19) | C22—C21—C29—N21 | 173.78 (18) |
S11—C11—C19—N11 | −13.0 (2) | S21—C21—C29—N21 | −9.3 (2) |
C12—C11—C19—C110 | −13.9 (3) | C22—C21—C29—C210 | −7.3 (3) |
S11—C11—C19—C110 | 166.64 (15) | S21—C21—C29—C210 | 169.70 (15) |
C11—C19—N11—N12 | 177.05 (16) | C21—C29—N21—N22 | 176.63 (16) |
C110—C19—N11—N12 | −2.6 (3) | C210—C29—N21—N22 | −2.3 (3) |
C19—N11—N12—C111 | 168.46 (17) | C29—N21—N22—C211 | 171.23 (18) |
N11—N12—C111—O11 | −177.39 (17) | N21—N22—C211—O21 | 176.31 (18) |
N11—N12—C111—N13 | 1.1 (3) | N21—N22—C211—N23 | −4.0 (3) |
O11—C111—N13—C112 | 8.0 (3) | O21—C211—N23—C212 | 9.9 (3) |
N12—C111—N13—C112 | −170.44 (18) | N22—C211—N23—C212 | −169.85 (18) |
C111—N13—C112—C113 | −13.3 (3) | C211—N23—C212—C217 | −177.5 (2) |
C111—N13—C112—C117 | 166.3 (2) | C211—N23—C212—C213 | 5.4 (3) |
C117—C112—C113—C114 | −1.6 (3) | C217—C212—C213—C214 | −2.5 (3) |
N13—C112—C113—C114 | 177.9 (2) | N23—C212—C213—C214 | 174.54 (19) |
C112—C113—C114—C115 | 1.4 (4) | C212—C213—C214—C215 | 1.3 (3) |
C113—C114—C115—C116 | −0.3 (4) | C213—C214—C215—C216 | 0.3 (3) |
C114—C115—C116—C117 | −0.4 (3) | C214—C215—C216—C217 | −0.6 (3) |
C113—C112—C117—C116 | 0.9 (3) | C215—C216—C217—C212 | −0.7 (3) |
N13—C112—C117—C116 | −178.7 (2) | C213—C212—C217—C216 | 2.2 (3) |
C115—C116—C117—C112 | 0.2 (3) | N23—C212—C217—C216 | −175.0 (2) |
Cg1 is the centroid of the S11, C11, C12, C13, C18 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N12—H12N···O21 | 0.97 (2) | 1.91 (2) | 2.847 (2) | 162.1 (19) |
N22—H22N···O11 | 0.89 (2) | 1.99 (2) | 2.840 (2) | 158 (2) |
C113—H113···O11 | 0.95 | 2.29 | 2.886 (2) | 120 |
C213—H213···O21 | 0.95 | 2.26 | 2.871 (2) | 121 |
C15—H15···O11i | 0.95 | 2.62 | 3.435 (2) | 144 |
C24—H24···Cg1ii | 0.95 | 2.80 | 3.482 (2) | 130 |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C17H15N3OS |
Mr | 309.38 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 89 |
a, b, c (Å) | 9.8858 (3), 13.2737 (5), 13.6121 (8) |
α, β, γ (°) | 113.961 (3), 98.153 (3), 107.778 (2) |
V (Å3) | 1480.02 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.22 |
Crystal size (mm) | 0.38 × 0.14 × 0.05 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.826, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 25263, 8650, 5747 |
Rint | 0.052 |
(sin θ/λ)max (Å−1) | 0.706 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.147, 1.07 |
No. of reflections | 8650 |
No. of parameters | 411 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.70, −0.37 |
Computer programs: APEX2 (Bruker, 2009) and SAINT (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008) and TITAN2000 (Hunter & Simpson, 1999), SHELXL97 (Sheldrick, 2008) and TITAN2000 (Hunter & Simpson, 1999), SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2008), SHELXL97 (Sheldrick, 2008), enCIFer (Allen et al., 2004), PLATON (Spek, 2009) and publCIF (Westrip, 2010).
Cg1 is the centroid of the S11, C11, C12, C13, C18 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N12—H12N···O21 | 0.97 (2) | 1.91 (2) | 2.847 (2) | 162.1 (19) |
N22—H22N···O11 | 0.89 (2) | 1.99 (2) | 2.840 (2) | 158 (2) |
C113—H113···O11 | 0.95 | 2.29 | 2.886 (2) | 119.8 |
C213—H213···O21 | 0.95 | 2.26 | 2.871 (2) | 121.1 |
C15—H15···O11i | 0.95 | 2.62 | 3.435 (2) | 144.1 |
C24—H24···Cg1ii | 0.95 | 2.80 | 3.482 (2) | 130 |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, −y+1, −z+1. |
Acknowledgements
We wish to thank Universiti Kebangsaan Malaysia and the Ministry of Higher Education, Malaysia, for supporting this research through grants UKM-ST-01-FRGS0022–2006 and UKM-GUP-NBT-08–27-112. We also thank the University of Otago for the purchase of the diffractometer.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Semicarbazones are of considerable interest because of their wide spectrum of biological applications, and display anticonvulsant (Alam et al., 2010), antitubercular (Sriram et al., 2004) and antimicrobial activity (Siji et al., 2010). The biological activity of semicarbazones is considered to be due to their ability to form chelate complexes with transition metals (Sharma et al., 2006).In view of the importance of these compounds, we report here the structure of the title semicarbazone derivative (Fig. 1).
The asymmetric unit of the title compound contains two molecules, 1 and 2. The benzothiophene group and the C9=N1—N2—C11(O1)N3 semicarbazone units are almost coplanar with N1—C9—C1—S1 torsion angles of -13.0 (2)° for 1 and -9.3 (2)° for 2. The phenyl rings show somewhat greater coplanarity with the semicarbazone linking units the C11—N3—C12—C13 angles being -13.3 (3)° for 1 and 5.4 (3)° for 2. The dihedral angles between the benzothiophene groups and the phenyl rings are 36.36 (7)° for 1 and 29.71 (8)° for 2. Both molecules adopt E configurations with respect to the C=N bonds. There are no important differences in the bond lengths and angles between the two unique molecules which overlay with an r.m.s. deviation of 0.053 Å (Macrae et al., 2008). The bond distances and angles are in a good agreement with values reported for similar structures (Beraldo et al., 2001; Fun et al., 2009a,b; Mendoza-Meroño et al. 2011). Intramolecular C113–H113···O11 and C113–H113···O11 hydrogen bonds are observed in both molecules and generate S(6) rings (Bernstein et al. 1995).
In the crystal structure, intermolecular N12—H12N···O21 and N22—H22N···O11 hydrogen bonds (Table 1) link the molecules into dimers (Fig. 2). A weak C110—H11A..O21 interaction further strengthens the dimer unit for molecule 1. Alternating dimers are further interconnected by weak C15–H15···O11 contacts generating zigzag rows along b. C24—H24..π contacts to the S11, C11, C12, C13, C18 thiophene rings of adjacent molecules form stacks along a, (Fig. 3).