organic compounds
4-Nitrobenzoic acid–N-(pyrimidin-2-yl)aniline (1/1)
aDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, and bChemistry Department, Faculty of, Science, King Abdulaziz University, PO Box 80203 Jeddah, Saudi Arabia
*Correspondence e-mail: edward.tiekink@gmail.com
Four independent molecules comprise the 10H9N3·C7H5NO4, two for each component. Small conformational differences are noted for the benzoic acid derivatives, notably in the twists of the carboxylic acid residue out of the plane of the benzene ring to which it is connected [torsion angles = 167.62 (17) and 174.54 (17)°]. In the aniline derivative, the major difference is observed in the dihedral angles formed between the CN3 and phenyl least-squares planes [1.51 (5) and 6.25 (6)°]. Pairs of molecules associate via O—H⋯N and N—H⋯O hydrogen bonds leading to eight-membered {⋯HOCO⋯HNCN} hetero-synthons. The two-molecule aggregates are consolidated in the by C—H⋯O(nitro) and π–π interactions [shortest centroid–centroid distance between benzene rings = 3.6242 (10) Å].
of the title CRelated literature
For related studies in ). For the structure of N-(pyrimidin-2-yl)aniline, see: Badaruddin et al. (2009). For the structure of 4-nitrobenzoic acid, see: Tonogaki et al. (1993).
formation, see: Wardell & Tiekink (2011Experimental
Crystal data
|
Refinement
|
Data collection: CrysAlis PRO (Agilent, 2010); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997), QMol (Gans & Shalloway, 2001) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811044175/ez2266sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811044175/ez2266Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811044175/ez2266Isup3.cml
N-(Pyrimidin-2-yl)aniline (0.05 g, 0.00029 mol) and 4-nitrobenzoic acid (0.048 g, 0.00029 mol) were refluxed in a solution comprising ethyl acetate (3 ml) and tetrahydrofuran (3 ml) for 2.5 h at 333 K. The mixture was then stirred overnight and left for crystallization. Yellow crystals formed after three to four days; M.pt: 397–398 K.
The H-atoms were placed in calculated positions (C—H 0.95 Å) and were included in the
in the riding model approximation, with Uiso(H) set to 1.2Uequiv(C). The O– and N-bound H-atoms were located in a difference Fourier map but were were refined with distance restraints of 0.84±0.01 (O—H) and 0.88±0.01 Å (N—H), and with Uiso(H) = yUeq(O or N) with y = 1.5 for O and y = 1.2 for N. Four reflections, i.e. (0 1 1), (6 3 6), (7 7 7) and (9 6 3), were omitted from the final owing to poor agreement.Data collection: CrysAlis PRO (Agilent, 2010); cell
CrysAlis PRO (Agilent, 2010); data reduction: CrysAlis PRO (Agilent, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997), QMol (Gans & Shalloway, 2001) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. The molecular structures of the four molecules comprising the asymmetric unit in (I) showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level. | |
Fig. 2. An overlay diagram of the two 4-nitrobenzoic acid molecules in (I) with the literature structure (see text). The red and blue images illustrate the O1- and O5-containing molecules of (I), respectively, and the green image illustrates the literature structure. | |
Fig. 3. An overlay diagram of the two N-(pyrimidin-2-yl)aniline molecules in (I) with the literature structure which also contains two independent molecules (see text). The red and blue images illustrate the N1- and N4-containing molecules of (I), respectively. The green and black images illustrate the two molecules in the literature structure. | |
Fig. 4. Two supramolecular two molecule aggregates in (I) mediated by O—H···N and N—H···O hydrogen bonds shown as orange and blue dashed lines, respectively. | |
Fig. 5. A view in projection down the c axis of the unit-cell contents of (I). The O—H···N, N—H···O and C—H···O interactions are shown as orange, blue and green dashed lines, respectively. |
C10H9N3·C7H5NO4 | F(000) = 1408 |
Mr = 338.32 | Dx = 1.469 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5286 reflections |
a = 12.7754 (4) Å | θ = 2.3–29.3° |
b = 25.7788 (8) Å | µ = 0.11 mm−1 |
c = 9.5813 (3) Å | T = 100 K |
β = 104.209 (4)° | Block, colourless |
V = 3058.92 (17) Å3 | 0.35 × 0.30 × 0.25 mm |
Z = 8 |
Agilent SuperNova Dual diffractometer with an Atlas detector | 6818 independent reflections |
Radiation source: SuperNova (Mo) X-ray Source | 5093 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.031 |
Detector resolution: 10.4041 pixels mm-1 | θmax = 27.5°, θmin = 2.3° |
ω scan | h = −16→16 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | k = −25→33 |
Tmin = 0.856, Tmax = 1.000 | l = −12→11 |
15808 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.118 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0435P)2 + 1.2445P] where P = (Fo2 + 2Fc2)/3 |
6818 reflections | (Δ/σ)max < 0.001 |
463 parameters | Δρmax = 0.26 e Å−3 |
4 restraints | Δρmin = −0.28 e Å−3 |
C10H9N3·C7H5NO4 | V = 3058.92 (17) Å3 |
Mr = 338.32 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.7754 (4) Å | µ = 0.11 mm−1 |
b = 25.7788 (8) Å | T = 100 K |
c = 9.5813 (3) Å | 0.35 × 0.30 × 0.25 mm |
β = 104.209 (4)° |
Agilent SuperNova Dual diffractometer with an Atlas detector | 6818 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | 5093 reflections with I > 2σ(I) |
Tmin = 0.856, Tmax = 1.000 | Rint = 0.031 |
15808 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 4 restraints |
wR(F2) = 0.118 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.26 e Å−3 |
6818 reflections | Δρmin = −0.28 e Å−3 |
463 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.85371 (10) | 0.60855 (5) | 0.50402 (13) | 0.0228 (3) | |
O2 | 0.73858 (10) | 0.55038 (5) | 0.55581 (14) | 0.0244 (3) | |
H2O | 0.7228 (17) | 0.5752 (6) | 0.608 (2) | 0.037* | |
O3 | 1.04527 (12) | 0.41493 (6) | 0.13302 (18) | 0.0414 (4) | |
O4 | 0.95094 (12) | 0.35836 (5) | 0.21412 (17) | 0.0382 (4) | |
O5 | 0.60266 (10) | 0.23665 (5) | 0.43762 (14) | 0.0236 (3) | |
O6 | 0.67258 (11) | 0.29895 (5) | 0.32451 (14) | 0.0264 (3) | |
H6O | 0.7045 (17) | 0.2740 (6) | 0.294 (2) | 0.040* | |
O7 | 0.39904 (11) | 0.43347 (5) | 0.78791 (14) | 0.0292 (3) | |
O8 | 0.48451 (11) | 0.49026 (5) | 0.69235 (14) | 0.0268 (3) | |
N1 | 0.75301 (12) | 0.69124 (6) | 0.65279 (16) | 0.0184 (3) | |
H1N | 0.7837 (14) | 0.6684 (6) | 0.6080 (19) | 0.022* | |
N2 | 0.67877 (11) | 0.61741 (5) | 0.71728 (15) | 0.0179 (3) | |
N3 | 0.63472 (12) | 0.69905 (5) | 0.80552 (15) | 0.0182 (3) | |
N4 | 0.74841 (12) | 0.15764 (6) | 0.34898 (16) | 0.0206 (3) | |
H4N | 0.7060 (13) | 0.1808 (6) | 0.375 (2) | 0.025* | |
N5 | 0.78776 (12) | 0.22892 (6) | 0.23078 (16) | 0.0195 (3) | |
N6 | 0.87374 (12) | 0.14807 (6) | 0.20705 (16) | 0.0208 (3) | |
N7 | 0.97993 (13) | 0.40311 (6) | 0.20136 (18) | 0.0272 (4) | |
N8 | 0.45857 (12) | 0.44542 (6) | 0.71057 (15) | 0.0196 (3) | |
C1 | 0.68704 (14) | 0.66985 (7) | 0.72861 (18) | 0.0168 (4) | |
C2 | 0.62103 (14) | 0.59339 (7) | 0.79624 (19) | 0.0201 (4) | |
H2 | 0.6140 | 0.5567 | 0.7900 | 0.024* | |
C3 | 0.57137 (14) | 0.61991 (7) | 0.88640 (19) | 0.0206 (4) | |
H3 | 0.5336 | 0.6025 | 0.9466 | 0.025* | |
C4 | 0.57942 (14) | 0.67334 (7) | 0.88454 (18) | 0.0191 (4) | |
H4 | 0.5435 | 0.6928 | 0.9429 | 0.023* | |
C5 | 0.78214 (14) | 0.74334 (7) | 0.63821 (18) | 0.0173 (4) | |
C6 | 0.85205 (14) | 0.75203 (7) | 0.54896 (19) | 0.0191 (4) | |
H6 | 0.8780 | 0.7234 | 0.5047 | 0.023* | |
C7 | 0.88375 (14) | 0.80179 (7) | 0.52446 (19) | 0.0213 (4) | |
H7 | 0.9305 | 0.8072 | 0.4625 | 0.026* | |
C8 | 0.84778 (15) | 0.84381 (7) | 0.58981 (19) | 0.0212 (4) | |
H8 | 0.8695 | 0.8780 | 0.5731 | 0.025* | |
C9 | 0.77973 (15) | 0.83529 (7) | 0.67983 (19) | 0.0214 (4) | |
H9 | 0.7554 | 0.8640 | 0.7257 | 0.026* | |
C10 | 0.74631 (15) | 0.78552 (7) | 0.70434 (19) | 0.0202 (4) | |
H10 | 0.6992 | 0.7803 | 0.7660 | 0.024* | |
C11 | 0.80609 (14) | 0.17769 (7) | 0.25915 (18) | 0.0183 (4) | |
C12 | 0.84094 (14) | 0.25086 (7) | 0.14286 (19) | 0.0211 (4) | |
H12 | 0.8299 | 0.2867 | 0.1210 | 0.025* | |
C13 | 0.91108 (15) | 0.22362 (7) | 0.0826 (2) | 0.0233 (4) | |
H13 | 0.9477 | 0.2395 | 0.0186 | 0.028* | |
C14 | 0.92555 (14) | 0.17199 (7) | 0.11999 (19) | 0.0214 (4) | |
H14 | 0.9750 | 0.1524 | 0.0818 | 0.026* | |
C15 | 0.74319 (14) | 0.10683 (7) | 0.40058 (19) | 0.0187 (4) | |
C16 | 0.68064 (15) | 0.10025 (7) | 0.50034 (19) | 0.0222 (4) | |
H16 | 0.6465 | 0.1294 | 0.5308 | 0.027* | |
C17 | 0.66824 (15) | 0.05151 (7) | 0.5550 (2) | 0.0233 (4) | |
H17 | 0.6251 | 0.0474 | 0.6222 | 0.028* | |
C18 | 0.71820 (15) | 0.00886 (7) | 0.51246 (19) | 0.0228 (4) | |
H18 | 0.7098 | −0.0246 | 0.5500 | 0.027* | |
C19 | 0.78049 (15) | 0.01546 (7) | 0.4146 (2) | 0.0253 (4) | |
H19 | 0.8151 | −0.0138 | 0.3854 | 0.030* | |
C20 | 0.79362 (15) | 0.06385 (7) | 0.3581 (2) | 0.0228 (4) | |
H20 | 0.8368 | 0.0676 | 0.2909 | 0.027* | |
C28 | 0.61670 (14) | 0.28223 (7) | 0.41411 (18) | 0.0192 (4) | |
C29 | 0.57437 (14) | 0.32553 (7) | 0.48937 (18) | 0.0180 (4) | |
C30 | 0.59992 (14) | 0.37699 (7) | 0.46832 (19) | 0.0196 (4) | |
H30 | 0.6429 | 0.3850 | 0.4032 | 0.023* | |
C31 | 0.56314 (14) | 0.41665 (7) | 0.54154 (19) | 0.0196 (4) | |
H31 | 0.5808 | 0.4518 | 0.5282 | 0.023* | |
C32 | 0.50015 (14) | 0.40359 (7) | 0.63449 (18) | 0.0177 (4) | |
C33 | 0.47428 (15) | 0.35275 (7) | 0.65914 (19) | 0.0209 (4) | |
H33 | 0.4316 | 0.3449 | 0.7249 | 0.025* | |
C34 | 0.51214 (14) | 0.31377 (7) | 0.58564 (19) | 0.0213 (4) | |
H34 | 0.4955 | 0.2786 | 0.6010 | 0.026* | |
C21 | 0.81529 (14) | 0.56496 (7) | 0.49520 (18) | 0.0183 (4) | |
C22 | 0.85442 (14) | 0.52222 (7) | 0.41378 (18) | 0.0183 (4) | |
C23 | 0.82458 (14) | 0.47097 (7) | 0.42781 (19) | 0.0207 (4) | |
H23 | 0.7765 | 0.4629 | 0.4862 | 0.025* | |
C24 | 0.86457 (15) | 0.43168 (7) | 0.35713 (19) | 0.0217 (4) | |
H24 | 0.8444 | 0.3966 | 0.3659 | 0.026* | |
C25 | 0.93451 (14) | 0.44478 (7) | 0.27357 (19) | 0.0204 (4) | |
C26 | 0.96440 (15) | 0.49535 (7) | 0.2557 (2) | 0.0227 (4) | |
H26 | 1.0115 | 0.5033 | 0.1958 | 0.027* | |
C27 | 0.92389 (14) | 0.53422 (7) | 0.32744 (19) | 0.0198 (4) | |
H27 | 0.9437 | 0.5693 | 0.3175 | 0.024* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0274 (7) | 0.0153 (7) | 0.0280 (7) | −0.0011 (5) | 0.0110 (6) | −0.0024 (5) |
O2 | 0.0285 (7) | 0.0200 (7) | 0.0293 (7) | −0.0027 (6) | 0.0161 (6) | −0.0074 (6) |
O3 | 0.0402 (9) | 0.0332 (9) | 0.0613 (10) | −0.0049 (7) | 0.0326 (8) | −0.0181 (8) |
O4 | 0.0361 (9) | 0.0197 (8) | 0.0628 (10) | −0.0052 (6) | 0.0197 (8) | −0.0163 (7) |
O5 | 0.0260 (7) | 0.0173 (7) | 0.0293 (7) | 0.0011 (5) | 0.0105 (6) | −0.0013 (5) |
O6 | 0.0329 (8) | 0.0208 (7) | 0.0309 (7) | 0.0078 (6) | 0.0181 (6) | 0.0019 (6) |
O7 | 0.0396 (8) | 0.0246 (7) | 0.0313 (7) | −0.0007 (6) | 0.0238 (7) | −0.0013 (6) |
O8 | 0.0359 (8) | 0.0134 (7) | 0.0336 (8) | −0.0042 (6) | 0.0136 (6) | −0.0028 (6) |
N1 | 0.0219 (8) | 0.0140 (8) | 0.0229 (8) | 0.0011 (6) | 0.0120 (7) | −0.0021 (6) |
N2 | 0.0186 (7) | 0.0150 (7) | 0.0209 (7) | 0.0002 (6) | 0.0061 (6) | −0.0003 (6) |
N3 | 0.0188 (8) | 0.0173 (8) | 0.0195 (7) | 0.0015 (6) | 0.0068 (6) | −0.0011 (6) |
N4 | 0.0210 (8) | 0.0176 (8) | 0.0266 (8) | 0.0034 (6) | 0.0122 (7) | 0.0006 (6) |
N5 | 0.0206 (8) | 0.0167 (8) | 0.0217 (8) | −0.0009 (6) | 0.0063 (6) | 0.0000 (6) |
N6 | 0.0184 (8) | 0.0213 (8) | 0.0246 (8) | 0.0013 (6) | 0.0087 (7) | 0.0000 (6) |
N7 | 0.0209 (8) | 0.0244 (9) | 0.0369 (10) | −0.0021 (7) | 0.0082 (7) | −0.0117 (7) |
N8 | 0.0230 (8) | 0.0172 (8) | 0.0191 (8) | −0.0007 (6) | 0.0058 (7) | −0.0013 (6) |
C1 | 0.0159 (8) | 0.0175 (9) | 0.0167 (8) | 0.0007 (7) | 0.0033 (7) | 0.0007 (7) |
C2 | 0.0191 (9) | 0.0184 (9) | 0.0227 (9) | −0.0005 (7) | 0.0051 (8) | 0.0009 (7) |
C3 | 0.0206 (9) | 0.0216 (9) | 0.0211 (9) | −0.0002 (8) | 0.0081 (8) | 0.0028 (7) |
C4 | 0.0191 (9) | 0.0206 (9) | 0.0189 (9) | 0.0009 (7) | 0.0072 (7) | −0.0002 (7) |
C5 | 0.0177 (9) | 0.0159 (9) | 0.0180 (9) | −0.0004 (7) | 0.0041 (7) | 0.0006 (7) |
C6 | 0.0195 (9) | 0.0186 (9) | 0.0207 (9) | 0.0020 (7) | 0.0076 (8) | −0.0001 (7) |
C7 | 0.0195 (9) | 0.0226 (10) | 0.0234 (9) | −0.0009 (8) | 0.0085 (8) | 0.0024 (8) |
C8 | 0.0219 (9) | 0.0173 (9) | 0.0232 (9) | −0.0030 (8) | 0.0035 (8) | 0.0019 (7) |
C9 | 0.0261 (10) | 0.0172 (9) | 0.0211 (9) | 0.0008 (8) | 0.0061 (8) | −0.0024 (7) |
C10 | 0.0226 (9) | 0.0196 (9) | 0.0199 (9) | 0.0004 (8) | 0.0083 (8) | 0.0006 (7) |
C11 | 0.0176 (9) | 0.0188 (9) | 0.0180 (9) | −0.0022 (7) | 0.0034 (7) | −0.0015 (7) |
C12 | 0.0201 (9) | 0.0191 (9) | 0.0237 (9) | −0.0036 (8) | 0.0044 (8) | 0.0000 (7) |
C13 | 0.0205 (9) | 0.0231 (10) | 0.0279 (10) | −0.0032 (8) | 0.0090 (8) | 0.0015 (8) |
C14 | 0.0179 (9) | 0.0251 (10) | 0.0226 (9) | −0.0014 (8) | 0.0075 (8) | −0.0023 (8) |
C15 | 0.0166 (9) | 0.0190 (9) | 0.0196 (9) | −0.0014 (7) | 0.0030 (7) | 0.0005 (7) |
C16 | 0.0213 (9) | 0.0232 (10) | 0.0234 (9) | 0.0026 (8) | 0.0082 (8) | −0.0003 (8) |
C17 | 0.0212 (9) | 0.0274 (10) | 0.0222 (9) | −0.0010 (8) | 0.0074 (8) | 0.0034 (8) |
C18 | 0.0222 (10) | 0.0213 (10) | 0.0240 (9) | −0.0042 (8) | 0.0038 (8) | 0.0026 (8) |
C19 | 0.0270 (10) | 0.0205 (10) | 0.0296 (10) | 0.0003 (8) | 0.0091 (9) | −0.0012 (8) |
C20 | 0.0234 (10) | 0.0222 (10) | 0.0258 (10) | −0.0018 (8) | 0.0115 (8) | −0.0006 (8) |
C28 | 0.0182 (9) | 0.0203 (10) | 0.0188 (9) | 0.0038 (7) | 0.0037 (7) | 0.0016 (7) |
C29 | 0.0174 (9) | 0.0180 (9) | 0.0174 (8) | 0.0012 (7) | 0.0022 (7) | 0.0005 (7) |
C30 | 0.0182 (9) | 0.0213 (9) | 0.0201 (9) | 0.0006 (7) | 0.0064 (7) | 0.0009 (7) |
C31 | 0.0207 (9) | 0.0157 (9) | 0.0223 (9) | −0.0002 (7) | 0.0053 (8) | 0.0021 (7) |
C32 | 0.0174 (9) | 0.0176 (9) | 0.0177 (8) | 0.0015 (7) | 0.0036 (7) | −0.0013 (7) |
C33 | 0.0239 (10) | 0.0189 (9) | 0.0222 (9) | −0.0025 (8) | 0.0101 (8) | 0.0003 (7) |
C34 | 0.0232 (9) | 0.0159 (9) | 0.0253 (9) | 0.0000 (8) | 0.0065 (8) | 0.0015 (7) |
C21 | 0.0183 (9) | 0.0198 (9) | 0.0163 (8) | 0.0030 (7) | 0.0034 (7) | 0.0013 (7) |
C22 | 0.0169 (9) | 0.0177 (9) | 0.0181 (8) | 0.0021 (7) | 0.0002 (7) | −0.0011 (7) |
C23 | 0.0206 (9) | 0.0198 (9) | 0.0221 (9) | −0.0002 (8) | 0.0059 (8) | −0.0007 (7) |
C24 | 0.0211 (9) | 0.0177 (9) | 0.0250 (9) | 0.0004 (8) | 0.0034 (8) | −0.0013 (7) |
C25 | 0.0171 (9) | 0.0193 (9) | 0.0238 (9) | 0.0023 (7) | 0.0027 (8) | −0.0069 (7) |
C26 | 0.0192 (9) | 0.0234 (10) | 0.0270 (10) | −0.0031 (8) | 0.0085 (8) | −0.0046 (8) |
C27 | 0.0188 (9) | 0.0165 (9) | 0.0233 (9) | 0.0003 (7) | 0.0039 (7) | −0.0022 (7) |
O1—C21 | 1.221 (2) | C9—H9 | 0.9500 |
O2—C21 | 1.311 (2) | C10—H10 | 0.9500 |
O2—H2O | 0.866 (9) | C12—C13 | 1.372 (3) |
O3—N7 | 1.219 (2) | C12—H12 | 0.9500 |
O4—N7 | 1.227 (2) | C13—C14 | 1.379 (3) |
O5—C28 | 1.218 (2) | C13—H13 | 0.9500 |
O6—C28 | 1.317 (2) | C14—H14 | 0.9500 |
O6—H6O | 0.853 (9) | C15—C20 | 1.392 (2) |
O7—N8 | 1.2243 (18) | C15—C16 | 1.399 (2) |
O8—N8 | 1.2267 (18) | C16—C17 | 1.385 (3) |
N1—C1 | 1.357 (2) | C16—H16 | 0.9500 |
N1—C5 | 1.410 (2) | C17—C18 | 1.382 (3) |
N1—H1N | 0.876 (9) | C17—H17 | 0.9500 |
N2—C2 | 1.332 (2) | C18—C19 | 1.381 (2) |
N2—C1 | 1.358 (2) | C18—H18 | 0.9500 |
N3—C4 | 1.332 (2) | C19—C20 | 1.386 (3) |
N3—C1 | 1.341 (2) | C19—H19 | 0.9500 |
N4—C11 | 1.365 (2) | C20—H20 | 0.9500 |
N4—C15 | 1.407 (2) | C28—C29 | 1.500 (2) |
N4—H4N | 0.881 (9) | C29—C34 | 1.391 (2) |
N5—C12 | 1.331 (2) | C29—C30 | 1.393 (2) |
N5—C11 | 1.357 (2) | C30—C31 | 1.386 (2) |
N6—C14 | 1.336 (2) | C30—H30 | 0.9500 |
N6—C11 | 1.338 (2) | C31—C32 | 1.380 (2) |
N7—C25 | 1.472 (2) | C31—H31 | 0.9500 |
N8—C32 | 1.472 (2) | C32—C33 | 1.386 (2) |
C2—C3 | 1.373 (2) | C33—C34 | 1.381 (2) |
C2—H2 | 0.9500 | C33—H33 | 0.9500 |
C3—C4 | 1.382 (2) | C34—H34 | 0.9500 |
C3—H3 | 0.9500 | C21—C22 | 1.505 (2) |
C4—H4 | 0.9500 | C22—C27 | 1.389 (2) |
C5—C10 | 1.391 (2) | C22—C23 | 1.391 (2) |
C5—C6 | 1.398 (2) | C23—C24 | 1.384 (2) |
C6—C7 | 1.382 (2) | C23—H23 | 0.9500 |
C6—H6 | 0.9500 | C24—C25 | 1.380 (2) |
C7—C8 | 1.385 (2) | C24—H24 | 0.9500 |
C7—H7 | 0.9500 | C25—C26 | 1.381 (3) |
C8—C9 | 1.384 (2) | C26—C27 | 1.385 (2) |
C8—H8 | 0.9500 | C26—H26 | 0.9500 |
C9—C10 | 1.390 (2) | C27—H27 | 0.9500 |
C21—O2—H2O | 110.5 (14) | C20—C15—C16 | 119.11 (16) |
C28—O6—H6O | 111.2 (15) | C20—C15—N4 | 124.96 (15) |
C1—N1—C5 | 130.82 (15) | C16—C15—N4 | 115.93 (15) |
C1—N1—H1N | 113.6 (12) | C17—C16—C15 | 120.40 (16) |
C5—N1—H1N | 115.5 (12) | C17—C16—H16 | 119.8 |
C2—N2—C1 | 117.41 (15) | C15—C16—H16 | 119.8 |
C4—N3—C1 | 116.00 (15) | C18—C17—C16 | 120.40 (16) |
C11—N4—C15 | 130.81 (15) | C18—C17—H17 | 119.8 |
C11—N4—H4N | 112.5 (13) | C16—C17—H17 | 119.8 |
C15—N4—H4N | 116.6 (13) | C19—C18—C17 | 119.15 (17) |
C12—N5—C11 | 116.77 (15) | C19—C18—H18 | 120.4 |
C14—N6—C11 | 115.72 (15) | C17—C18—H18 | 120.4 |
O3—N7—O4 | 123.48 (16) | C18—C19—C20 | 121.40 (17) |
O3—N7—C25 | 118.09 (15) | C18—C19—H19 | 119.3 |
O4—N7—C25 | 118.42 (15) | C20—C19—H19 | 119.3 |
O7—N8—O8 | 123.56 (14) | C19—C20—C15 | 119.55 (16) |
O7—N8—C32 | 117.95 (14) | C19—C20—H20 | 120.2 |
O8—N8—C32 | 118.48 (14) | C15—C20—H20 | 120.2 |
N3—C1—N1 | 121.65 (16) | O5—C28—O6 | 124.38 (16) |
N3—C1—N2 | 124.28 (15) | O5—C28—C29 | 122.83 (15) |
N1—C1—N2 | 114.06 (15) | O6—C28—C29 | 112.76 (15) |
N2—C2—C3 | 122.12 (17) | C34—C29—C30 | 119.75 (16) |
N2—C2—H2 | 118.9 | C34—C29—C28 | 119.25 (15) |
C3—C2—H2 | 118.9 | C30—C29—C28 | 120.96 (15) |
C2—C3—C4 | 116.16 (16) | C31—C30—C29 | 120.58 (16) |
C2—C3—H3 | 121.9 | C31—C30—H30 | 119.7 |
C4—C3—H3 | 121.9 | C29—C30—H30 | 119.7 |
N3—C4—C3 | 123.71 (16) | C32—C31—C30 | 118.07 (16) |
N3—C4—H4 | 118.1 | C32—C31—H31 | 121.0 |
C3—C4—H4 | 118.1 | C30—C31—H31 | 121.0 |
C10—C5—C6 | 118.98 (16) | C31—C32—C33 | 122.79 (16) |
C10—C5—N1 | 125.10 (15) | C31—C32—N8 | 118.63 (15) |
C6—C5—N1 | 115.92 (15) | C33—C32—N8 | 118.57 (14) |
C7—C6—C5 | 120.68 (16) | C34—C33—C32 | 118.24 (16) |
C7—C6—H6 | 119.7 | C34—C33—H33 | 120.9 |
C5—C6—H6 | 119.7 | C32—C33—H33 | 120.9 |
C6—C7—C8 | 120.36 (16) | C33—C34—C29 | 120.54 (16) |
C6—C7—H7 | 119.8 | C33—C34—H34 | 119.7 |
C8—C7—H7 | 119.8 | C29—C34—H34 | 119.7 |
C9—C8—C7 | 119.11 (16) | O1—C21—O2 | 124.39 (16) |
C9—C8—H8 | 120.4 | O1—C21—C22 | 122.06 (15) |
C7—C8—H8 | 120.4 | O2—C21—C22 | 113.54 (15) |
C8—C9—C10 | 121.17 (16) | C27—C22—C23 | 119.97 (16) |
C8—C9—H9 | 119.4 | C27—C22—C21 | 119.21 (16) |
C10—C9—H9 | 119.4 | C23—C22—C21 | 120.78 (15) |
C9—C10—C5 | 119.69 (16) | C24—C23—C22 | 120.34 (16) |
C9—C10—H10 | 120.2 | C24—C23—H23 | 119.8 |
C5—C10—H10 | 120.2 | C22—C23—H23 | 119.8 |
N6—C11—N5 | 125.17 (15) | C25—C24—C23 | 118.30 (17) |
N6—C11—N4 | 121.16 (16) | C25—C24—H24 | 120.8 |
N5—C11—N4 | 113.68 (15) | C23—C24—H24 | 120.8 |
N5—C12—C13 | 122.43 (17) | C24—C25—C26 | 122.76 (16) |
N5—C12—H12 | 118.8 | C24—C25—N7 | 118.70 (16) |
C13—C12—H12 | 118.8 | C26—C25—N7 | 118.54 (16) |
C12—C13—C14 | 116.37 (16) | C25—C26—C27 | 118.24 (16) |
C12—C13—H13 | 121.8 | C25—C26—H26 | 120.9 |
C14—C13—H13 | 121.8 | C27—C26—H26 | 120.9 |
N6—C14—C13 | 123.53 (16) | C26—C27—C22 | 120.37 (17) |
N6—C14—H14 | 118.2 | C26—C27—H27 | 119.8 |
C13—C14—H14 | 118.2 | C22—C27—H27 | 119.8 |
C4—N3—C1—N1 | −174.73 (16) | C16—C15—C20—C19 | 0.4 (3) |
C4—N3—C1—N2 | 6.1 (3) | N4—C15—C20—C19 | −178.62 (18) |
C5—N1—C1—N3 | 1.1 (3) | O5—C28—C29—C34 | −3.0 (3) |
C5—N1—C1—N2 | −179.67 (17) | O6—C28—C29—C34 | 178.90 (16) |
C2—N2—C1—N3 | −5.1 (3) | O5—C28—C29—C30 | 174.54 (17) |
C2—N2—C1—N1 | 175.71 (15) | O6—C28—C29—C30 | −3.6 (2) |
C1—N2—C2—C3 | −0.1 (3) | C34—C29—C30—C31 | −0.5 (3) |
N2—C2—C3—C4 | 3.6 (3) | C28—C29—C30—C31 | −178.06 (16) |
C1—N3—C4—C3 | −2.2 (3) | C29—C30—C31—C32 | −0.5 (3) |
C2—C3—C4—N3 | −2.4 (3) | C30—C31—C32—C33 | 1.2 (3) |
C1—N1—C5—C10 | 0.3 (3) | C30—C31—C32—N8 | −178.68 (15) |
C1—N1—C5—C6 | −179.26 (17) | O7—N8—C32—C31 | 176.93 (16) |
C10—C5—C6—C7 | −1.1 (3) | O8—N8—C32—C31 | −2.5 (2) |
N1—C5—C6—C7 | 178.48 (16) | O7—N8—C32—C33 | −3.0 (2) |
C5—C6—C7—C8 | 0.9 (3) | O8—N8—C32—C33 | 177.59 (16) |
C6—C7—C8—C9 | 0.0 (3) | C31—C32—C33—C34 | −0.9 (3) |
C7—C8—C9—C10 | −0.6 (3) | N8—C32—C33—C34 | 178.98 (16) |
C8—C9—C10—C5 | 0.4 (3) | C32—C33—C34—C29 | −0.1 (3) |
C6—C5—C10—C9 | 0.5 (3) | C30—C29—C34—C33 | 0.8 (3) |
N1—C5—C10—C9 | −179.09 (17) | C28—C29—C34—C33 | 178.42 (17) |
C14—N6—C11—N5 | −0.4 (3) | O1—C21—C22—C27 | −10.3 (3) |
C14—N6—C11—N4 | 179.87 (16) | O2—C21—C22—C27 | 170.65 (16) |
C12—N5—C11—N6 | 0.7 (3) | O1—C21—C22—C23 | 167.62 (17) |
C12—N5—C11—N4 | −179.51 (16) | O2—C21—C22—C23 | −11.4 (2) |
C15—N4—C11—N6 | −1.8 (3) | C27—C22—C23—C24 | 0.6 (3) |
C15—N4—C11—N5 | 178.41 (17) | C21—C22—C23—C24 | −177.32 (17) |
C11—N5—C12—C13 | 0.1 (3) | C22—C23—C24—C25 | 0.2 (3) |
N5—C12—C13—C14 | −1.2 (3) | C23—C24—C25—C26 | −1.2 (3) |
C11—N6—C14—C13 | −0.8 (3) | C23—C24—C25—N7 | 178.25 (16) |
C12—C13—C14—N6 | 1.5 (3) | O3—N7—C25—C24 | −176.83 (18) |
C11—N4—C15—C20 | −5.3 (3) | O4—N7—C25—C24 | 2.5 (3) |
C11—N4—C15—C16 | 175.72 (18) | O3—N7—C25—C26 | 2.7 (3) |
C20—C15—C16—C17 | −0.6 (3) | O4—N7—C25—C26 | −178.00 (18) |
N4—C15—C16—C17 | 178.45 (17) | C24—C25—C26—C27 | 1.4 (3) |
C15—C16—C17—C18 | 0.5 (3) | N7—C25—C26—C27 | −178.10 (16) |
C16—C17—C18—C19 | −0.1 (3) | C25—C26—C27—C22 | −0.5 (3) |
C17—C18—C19—C20 | −0.2 (3) | C23—C22—C27—C26 | −0.4 (3) |
C18—C19—C20—C15 | 0.0 (3) | C21—C22—C27—C26 | 177.51 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2o···N2 | 0.87 (1) | 1.70 (1) | 2.5581 (18) | 171 (2) |
O6—H6o···N5 | 0.85 (1) | 1.78 (1) | 2.6230 (18) | 171 (2) |
N1—H1n···O1 | 0.88 (1) | 2.15 (1) | 3.0217 (18) | 176 (2) |
N4—H4n···O5 | 0.88 (1) | 2.14 (1) | 3.0190 (19) | 180 (2) |
C2—H2···O8 | 0.95 | 2.41 | 3.201 (2) | 141 |
C12—H12···O4 | 0.95 | 2.43 | 3.106 (2) | 128 |
C18—H18···O7i | 0.95 | 2.56 | 3.330 (2) | 138 |
C19—H19···O3ii | 0.95 | 2.60 | 3.518 (2) | 163 |
C31—H31···O8iii | 0.95 | 2.55 | 3.238 (2) | 129 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x+2, y−1/2, −z+1/2; (iii) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C10H9N3·C7H5NO4 |
Mr | 338.32 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 12.7754 (4), 25.7788 (8), 9.5813 (3) |
β (°) | 104.209 (4) |
V (Å3) | 3058.92 (17) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.35 × 0.30 × 0.25 |
Data collection | |
Diffractometer | Agilent SuperNova Dual diffractometer with an Atlas detector |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2010) |
Tmin, Tmax | 0.856, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15808, 6818, 5093 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.118, 1.03 |
No. of reflections | 6818 |
No. of parameters | 463 |
No. of restraints | 4 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.26, −0.28 |
Computer programs: CrysAlis PRO (Agilent, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), QMol (Gans & Shalloway, 2001) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2o···N2 | 0.866 (9) | 1.698 (10) | 2.5581 (18) | 171 (2) |
O6—H6o···N5 | 0.853 (9) | 1.777 (10) | 2.6230 (18) | 171 (2) |
N1—H1n···O1 | 0.876 (9) | 2.147 (10) | 3.0217 (18) | 176.3 (17) |
N4—H4n···O5 | 0.881 (9) | 2.138 (10) | 3.0190 (19) | 179.6 (19) |
C2—H2···O8 | 0.95 | 2.41 | 3.201 (2) | 141 |
C12—H12···O4 | 0.95 | 2.43 | 3.106 (2) | 128 |
C18—H18···O7i | 0.95 | 2.56 | 3.330 (2) | 138 |
C19—H19···O3ii | 0.95 | 2.60 | 3.518 (2) | 163 |
C31—H31···O8iii | 0.95 | 2.55 | 3.238 (2) | 129 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x+2, y−1/2, −z+1/2; (iii) −x+1, −y+1, −z+1. |
Footnotes
‡Additional correspondence author, e-mail: zana@um.edu.my.
Acknowledgements
The Ministry of Higher Education, Malaysia, is thanked for research grants (FP047/2008 C & FP001/2010 A to ZA and RG125 to ERTT). The authors are also grateful to the University of Malaya for support of the crystallographic facility.
References
Agilent (2010). CrysAlis PRO. Agilent Technologies, Yarnton, England. Google Scholar
Badaruddin, E., Shah Bakhtiar, N., Aiyub, Z., Abdullah, Z. & Ng, S. W. (2009). Acta Cryst. E65, o703. Web of Science CSD CrossRef IUCr Journals Google Scholar
Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Gans, J. & Shalloway, D. (2001). J. Mol. Graphics Model. 19, 557–559. Web of Science CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Tonogaki, M., Kawata, T., Ohba, S., Iwata, Y. & Shibuya, I. (1993). Acta Cryst. B49, 1031–1039. CSD CrossRef CAS Web of Science IUCr Journals Google Scholar
Wardell, J. L. & Tiekink, E. R. T. (2011). J. Chem. Crystallogr. 41, 1418–1424. Web of Science CSD CrossRef CAS Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In continuation of recent studies into the phenomenon of co-crystal formation (Wardell & Tiekink, 2011), the title 1:1 carboxylic acid–secondary amine co-crystal, (I), was prepared. There are two independent molecules of each of 4-nitrobenzoic acid and N-(pyrimidin-2-yl)aniline comprising the crystallographic asymmetric unit of (I), Fig. 1.
The two independent molecules of 4-nitrobenzoic acid differ from each other marginally, and from the conformation found in the crystal structure of 4-nitrobenzoic acid (Tonogaki et al., 1993), Fig. 2. In each molecule of (I) there are small twists of the carboxylic acid residue out of the plane of the benzene ring to which it is connected, i.e. the O1—C21—C22—C23 and O5—C28—C29—C30 torsion angles are 167.62 (17) and 174.54 (17)°, respectively, and deviate from planarity compared with the equivalent torsion angle of 178.39 (4)° found in the literature structure (Tonogaki et al., 1993). Less variation is noted for the relative orientation of the nitro groups in (I). Thus, the O3—N7—C25—C26 and O7—N8—C32—C33 torsion angles of 2.7 (3) and -3.0 (2) °, respectively, indicate a similarity in their orientations in (I), and smaller deviations from co-planarity than observed in the literature structure [torsion angle = -14.78 (7)°].
Differences are also noted in the relative conformations found for the N-(pyrimidin-2-yl)aniline molecules in (I) and with those found in the crystal structure of N-(pyrimidin-2-yl)aniline (Badaruddin et al., 2009), Fig. 3. For the two independent molecules in (I), one of the pyrazinyl rings is twisted out of the CN3 plane [the C4—N3—C1—N1 torsion angle is -174.73 (16)°] whereas the other sees both least-squares planes co-planar; the C14—N6—C11—N4 torsion angle is -0.4 (3)°. In the literature structure, the two planes are effectively co-planar with the greatest deviation in the comparable C—N—C—N torsion angles being 177.12 (10)°. Significantly greater differences are noted in the twists between the CN3 and benzene least-squares planes. Thus, in (I), the two dihedral angles indicate a close to co-planar relationship between these residues, i.e. 1.51 (5) and 6.25 (6)°. By contrast, in the literature structure of N-(pyrimidin-2-yl)aniline (Badaruddin et al., 2009), the equivalent dihedral angles are 31.47 (4) and 29.59 (4)°, i.e. indicating significant twisting in the molecules.
In the crystal structure, two pairs of the four independent molecules comprising the asymmetric unit are connected into two molecule aggregates, Table 1 and Fig. 4. Eight-membered hetero-synthons are formed as the each carboxylic acid residue forms hydrogen bonds with the amino-H and one of the pyrazinyl-N atoms. The two molecular aggregates are connected into the three-dimensional architecture via C—H···O(nitro) interactions, Table 1, and several π–π interactions. The shortest of the latter, 3.6242 (10) Å, occurs between centrosymmetrically related (C22–C27)i rings; symmetry operation i: 2 - x, 1 - y, 1 - z. A view of the unit cell contents is shown in Fig. 5.