metal-organic compounds
Dichlorido[1-(2-chloroethyl)-3-(pyridin-4-ylmethyl-κN)urea](η6-hexamethylbenzene)ruthenium(II) chloroform monosolvate
aInstitut de Chimie, Université de Neuchâtel, Avenue de Bellevaux 51, CH-2000 Neuchâtel, Switzerland
*Correspondence e-mail: bruno.therrien@unine.ch
The RuII atom in the title compound, [RuCl2(C12H18)(C9H12ClN3O)]·CHCl3, exhibits a typical piano-stool coordination, defined by a hexamethylbenzene ligand, two chloride ligands and a pyridylurea ligand coordinated through the pyridine N atom. In the crystal, a dimeric structure is observed due to two strong N—H⋯Cl interactions between the NH groups of urea and the two chloride ligands of neighbouring molecules. In addition, the C=O group of the urea moiety interacts with the solvent molecule through weak C—H⋯O interactions.
Related literature
For the synthesis of 1-(chloroethyl)-3-(pyridin-4-ylmethyl)urea, see: Nakao et al. (1974). For a review on arene ruthenium chemistry, see: Therrien (2009). For a review on arene ruthenium complexes as anticancer agents, see: Süss-Fink (2010). For a review on multi-functional arene ruthenium complexes, see: Therrien & Smith (2011). For related structures, see: Auzias et al. (2008, 2009); Govender et al. (2009); Therrien et al. (2004); Therrien & Süss-Fink (2004).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1999); cell SMART and SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811043728/ff2037sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811043728/ff2037Isup2.hkl
Crystals suitable for X-ray
were obtained, after days, by slow diffusion of diethyl ether into a chloroform solution of the title complex.All H atoms were included in calculated positions (C—H = 0.93 Å for Carom, 0.98 for Å CH, 0.97 Å for CH2, 0.96 Å for CH3; N—H = 0.86 Å for NH2) and treated as riding atoms with the constraint Uiso(H) = 1.2 (1.5 for methyl) Ueq(carrier) applied.
Data collection: SMART (Bruker, 1999); cell
SMART and SAINT (Bruker, 1999); data reduction: SAINT (Bruker, 1999); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[RuCl2(C12H18)(C9H12ClN3O)]·CHCl3 | F(000) = 1352 |
Mr = 667.27 | Dx = 1.582 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 8000 reflections |
a = 15.0947 (16) Å | θ = 2.1–26.0° |
b = 13.3402 (10) Å | µ = 1.15 mm−1 |
c = 15.4847 (16) Å | T = 173 K |
β = 116.026 (11)° | Block, orange |
V = 2801.9 (5) Å3 | 0.18 × 0.16 × 0.15 mm |
Z = 4 |
Bruker SMART CCD diffractometer | 5514 independent reflections |
Radiation source: fine-focus sealed tube | 3710 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.065 |
Detector resolution: 0 pixels mm-1 | θmax = 26.2°, θmin = 2.1° |
ω scans | h = −18→18 |
Absorption correction: part of the (Walker & Stuart, 1983) | model (ΔF) k = −16→16 |
Tmin = 0.457, Tmax = 0.822 | l = −19→19 |
21527 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 0.89 | w = 1/[σ2(Fo2) + (0.0508P)2] where P = (Fo2 + 2Fc2)/3 |
5514 reflections | (Δ/σ)max = 0.001 |
304 parameters | Δρmax = 0.85 e Å−3 |
0 restraints | Δρmin = −0.64 e Å−3 |
[RuCl2(C12H18)(C9H12ClN3O)]·CHCl3 | V = 2801.9 (5) Å3 |
Mr = 667.27 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 15.0947 (16) Å | µ = 1.15 mm−1 |
b = 13.3402 (10) Å | T = 173 K |
c = 15.4847 (16) Å | 0.18 × 0.16 × 0.15 mm |
β = 116.026 (11)° |
Bruker SMART CCD diffractometer | 5514 independent reflections |
Absorption correction: part of the refinement model (ΔF) (Walker & Stuart, 1983) | 3710 reflections with I > 2σ(I) |
Tmin = 0.457, Tmax = 0.822 | Rint = 0.065 |
21527 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.088 | H-atom parameters constrained |
S = 0.89 | Δρmax = 0.85 e Å−3 |
5514 reflections | Δρmin = −0.64 e Å−3 |
304 parameters |
Experimental. A crystal was mounted at 173 K on a Bruker SMART CCD PLATFORM using Mo Kα graphite monochromated radiation. Image plate distance 70 mm, ϕ oscillation scans 0 - 200°, step Δϕ = 1.2°, 3 minutes per frame. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.0763 (3) | 1.0688 (3) | 0.3231 (3) | 0.0314 (8) | |
H1 | 0.0554 | 1.0827 | 0.2582 | 0.038* | |
C2 | 0.0574 (3) | 1.1379 (3) | 0.3791 (3) | 0.0315 (8) | |
H2 | 0.0239 | 1.1969 | 0.3517 | 0.038* | |
C3 | 0.0881 (3) | 1.1196 (3) | 0.4760 (2) | 0.0293 (8) | |
C4 | 0.1342 (3) | 1.0295 (3) | 0.5119 (2) | 0.0319 (8) | |
H4 | 0.1546 | 1.0136 | 0.5763 | 0.038* | |
C5 | 0.1502 (3) | 0.9633 (3) | 0.4521 (2) | 0.0277 (8) | |
H5 | 0.1805 | 0.9025 | 0.4775 | 0.033* | |
C6 | 0.0740 (3) | 1.2009 (3) | 0.5368 (3) | 0.0431 (10) | |
H6A | 0.1252 | 1.2508 | 0.5506 | 0.052* | |
H6B | 0.0113 | 1.2335 | 0.4990 | 0.052* | |
C7 | 0.1606 (3) | 1.1672 (3) | 0.7066 (3) | 0.0329 (9) | |
C8 | 0.2363 (4) | 1.1468 (3) | 0.8819 (3) | 0.0481 (11) | |
H8A | 0.2182 | 1.1656 | 0.9325 | 0.058* | |
H8B | 0.2893 | 1.1905 | 0.8857 | 0.058* | |
C9 | 0.2702 (4) | 1.0415 (3) | 0.8952 (3) | 0.0542 (12) | |
H9A | 0.2869 | 1.0221 | 0.8438 | 0.065* | |
H9B | 0.2178 | 0.9979 | 0.8929 | 0.065* | |
C10 | 0.2959 (3) | 0.9910 (3) | 0.3080 (3) | 0.0308 (8) | |
C11 | 0.3306 (3) | 0.9061 (3) | 0.3727 (3) | 0.0325 (9) | |
C12 | 0.3144 (3) | 0.8079 (3) | 0.3328 (3) | 0.0334 (9) | |
C13 | 0.2627 (3) | 0.7923 (3) | 0.2310 (3) | 0.0370 (9) | |
C14 | 0.2329 (3) | 0.8764 (3) | 0.1692 (3) | 0.0340 (9) | |
C15 | 0.2476 (3) | 0.9765 (3) | 0.2079 (3) | 0.0307 (8) | |
C16 | 0.3118 (3) | 1.0957 (3) | 0.3491 (3) | 0.0418 (10) | |
H16A | 0.3765 | 1.1184 | 0.3611 | 0.063* | |
H16B | 0.3056 | 1.0953 | 0.4082 | 0.063* | |
H16C | 0.2633 | 1.1399 | 0.3041 | 0.063* | |
C17 | 0.3823 (3) | 0.9204 (4) | 0.4789 (3) | 0.0501 (12) | |
H17A | 0.3609 | 0.8700 | 0.5099 | 0.075* | |
H17B | 0.3671 | 0.9856 | 0.4950 | 0.075* | |
H17C | 0.4522 | 0.9148 | 0.5002 | 0.075* | |
C18 | 0.3501 (3) | 0.7182 (3) | 0.3984 (4) | 0.0512 (12) | |
H18A | 0.4081 | 0.7360 | 0.4552 | 0.077* | |
H18B | 0.3653 | 0.6647 | 0.3657 | 0.077* | |
H18C | 0.2995 | 0.6968 | 0.4159 | 0.077* | |
C19 | 0.2403 (4) | 0.6873 (3) | 0.1928 (4) | 0.0539 (12) | |
H19A | 0.1891 | 0.6887 | 0.1281 | 0.081* | |
H19B | 0.2191 | 0.6484 | 0.2324 | 0.081* | |
H19C | 0.2986 | 0.6578 | 0.1933 | 0.081* | |
C20 | 0.1823 (4) | 0.8636 (4) | 0.0627 (3) | 0.0497 (12) | |
H20A | 0.1717 | 0.7936 | 0.0475 | 0.075* | |
H20B | 0.2226 | 0.8912 | 0.0350 | 0.075* | |
H20C | 0.1200 | 0.8978 | 0.0373 | 0.075* | |
C21 | 0.2080 (4) | 1.0643 (3) | 0.1401 (3) | 0.0472 (11) | |
H21A | 0.2077 | 1.1231 | 0.1757 | 0.071* | |
H21B | 0.1420 | 1.0499 | 0.0932 | 0.071* | |
H21C | 0.2490 | 1.0757 | 0.1081 | 0.071* | |
C22 | 0.5602 (3) | 0.8544 (4) | 0.2762 (3) | 0.0569 (13) | |
H22 | 0.6242 | 0.8541 | 0.2743 | 0.068* | |
Cl1 | 0.01290 (7) | 0.91323 (7) | 0.14482 (6) | 0.0321 (2) | |
Cl2 | 0.10728 (6) | 0.75212 (7) | 0.33295 (6) | 0.0290 (2) | |
Cl3 | 0.37626 (11) | 1.02837 (11) | 1.00899 (10) | 0.0704 (4) | |
Cl4 | 0.57449 (13) | 0.80206 (15) | 0.38502 (12) | 0.0914 (5) | |
Cl5 | 0.52064 (12) | 0.97922 (13) | 0.27048 (12) | 0.0865 (5) | |
Cl6 | 0.47653 (12) | 0.78766 (16) | 0.17822 (13) | 0.1018 (6) | |
N1 | 0.1238 (2) | 0.9823 (2) | 0.35846 (19) | 0.0262 (6) | |
N2 | 0.0757 (2) | 1.1693 (3) | 0.6257 (2) | 0.0369 (8) | |
H2A | 0.0218 | 1.1514 | 0.6275 | 0.044* | |
N3 | 0.1523 (2) | 1.1586 (3) | 0.7894 (2) | 0.0425 (9) | |
H3A | 0.0944 | 1.1602 | 0.7871 | 0.051* | |
O1 | 0.2414 (2) | 1.1743 (2) | 0.7056 (2) | 0.0440 (7) | |
Ru1 | 0.17329 (2) | 0.88883 (2) | 0.276570 (18) | 0.02275 (9) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.038 (2) | 0.029 (2) | 0.0265 (18) | 0.0039 (18) | 0.0134 (16) | 0.0031 (15) |
C2 | 0.037 (2) | 0.025 (2) | 0.0315 (19) | 0.0073 (16) | 0.0139 (17) | −0.0005 (14) |
C3 | 0.0322 (19) | 0.025 (2) | 0.0296 (18) | −0.0008 (17) | 0.0128 (15) | −0.0022 (15) |
C4 | 0.045 (2) | 0.030 (2) | 0.0215 (17) | 0.0005 (18) | 0.0150 (17) | −0.0023 (15) |
C5 | 0.034 (2) | 0.026 (2) | 0.0232 (17) | 0.0017 (16) | 0.0119 (15) | 0.0012 (14) |
C6 | 0.057 (3) | 0.038 (3) | 0.034 (2) | 0.009 (2) | 0.019 (2) | −0.0087 (17) |
C7 | 0.035 (2) | 0.035 (2) | 0.0310 (19) | 0.0032 (17) | 0.0159 (18) | −0.0065 (16) |
C8 | 0.061 (3) | 0.042 (3) | 0.044 (2) | 0.004 (2) | 0.025 (2) | −0.0036 (19) |
C9 | 0.079 (3) | 0.039 (3) | 0.049 (3) | −0.004 (3) | 0.032 (3) | −0.003 (2) |
C10 | 0.0269 (19) | 0.025 (2) | 0.042 (2) | −0.0063 (16) | 0.0170 (17) | −0.0009 (16) |
C11 | 0.0207 (18) | 0.034 (2) | 0.041 (2) | −0.0014 (16) | 0.0122 (16) | 0.0043 (16) |
C12 | 0.0260 (19) | 0.028 (2) | 0.052 (2) | 0.0036 (16) | 0.0227 (18) | 0.0054 (17) |
C13 | 0.039 (2) | 0.032 (2) | 0.051 (2) | 0.0029 (18) | 0.030 (2) | −0.0056 (18) |
C14 | 0.038 (2) | 0.039 (2) | 0.038 (2) | −0.0013 (18) | 0.0287 (18) | −0.0022 (17) |
C15 | 0.034 (2) | 0.029 (2) | 0.037 (2) | −0.0033 (17) | 0.0223 (17) | 0.0045 (16) |
C16 | 0.040 (2) | 0.030 (3) | 0.046 (2) | −0.0052 (18) | 0.0104 (19) | −0.0070 (18) |
C17 | 0.037 (2) | 0.063 (3) | 0.037 (2) | −0.007 (2) | 0.0039 (19) | 0.005 (2) |
C18 | 0.043 (3) | 0.038 (3) | 0.072 (3) | 0.008 (2) | 0.025 (2) | 0.019 (2) |
C19 | 0.065 (3) | 0.034 (3) | 0.075 (3) | 0.001 (2) | 0.043 (3) | −0.015 (2) |
C20 | 0.066 (3) | 0.053 (3) | 0.042 (2) | −0.008 (2) | 0.035 (2) | −0.012 (2) |
C21 | 0.062 (3) | 0.037 (3) | 0.043 (2) | −0.002 (2) | 0.023 (2) | 0.0124 (19) |
C22 | 0.032 (2) | 0.091 (4) | 0.050 (3) | 0.000 (2) | 0.019 (2) | −0.005 (2) |
Cl1 | 0.0302 (5) | 0.0372 (6) | 0.0252 (4) | 0.0009 (4) | 0.0087 (4) | 0.0016 (3) |
Cl2 | 0.0344 (5) | 0.0260 (5) | 0.0303 (4) | −0.0030 (4) | 0.0175 (4) | 0.0010 (3) |
Cl3 | 0.0693 (9) | 0.0665 (9) | 0.0635 (8) | 0.0216 (7) | 0.0180 (7) | 0.0133 (6) |
Cl4 | 0.0794 (10) | 0.1231 (15) | 0.0785 (10) | 0.0040 (10) | 0.0411 (9) | 0.0225 (9) |
Cl5 | 0.0725 (10) | 0.0923 (12) | 0.0855 (10) | 0.0146 (9) | 0.0261 (8) | −0.0067 (8) |
Cl6 | 0.0634 (9) | 0.1366 (17) | 0.0902 (11) | −0.0102 (10) | 0.0196 (8) | −0.0544 (11) |
N1 | 0.0291 (16) | 0.0251 (17) | 0.0252 (15) | −0.0010 (13) | 0.0126 (13) | −0.0041 (12) |
N2 | 0.0338 (18) | 0.044 (2) | 0.0356 (17) | −0.0001 (15) | 0.0176 (15) | −0.0114 (15) |
N3 | 0.0305 (18) | 0.065 (3) | 0.0322 (18) | 0.0021 (17) | 0.0140 (15) | −0.0040 (16) |
O1 | 0.0320 (15) | 0.058 (2) | 0.0486 (16) | 0.0000 (14) | 0.0239 (13) | −0.0006 (14) |
Ru1 | 0.02661 (15) | 0.02014 (15) | 0.02310 (14) | 0.00008 (13) | 0.01238 (11) | −0.00021 (12) |
C1—N1 | 1.342 (5) | C13—C19 | 1.500 (6) |
C1—C2 | 1.379 (5) | C13—Ru1 | 2.194 (4) |
C1—H1 | 0.9300 | C14—C15 | 1.440 (5) |
C2—C3 | 1.385 (5) | C14—C20 | 1.492 (5) |
C2—H2 | 0.9300 | C14—Ru1 | 2.217 (3) |
C3—C4 | 1.378 (5) | C15—C21 | 1.510 (5) |
C3—C6 | 1.511 (5) | C15—Ru1 | 2.192 (3) |
C4—C5 | 1.374 (5) | C16—H16A | 0.9600 |
C4—H4 | 0.9300 | C16—H16B | 0.9600 |
C5—N1 | 1.349 (4) | C16—H16C | 0.9600 |
C5—H5 | 0.9300 | C17—H17A | 0.9600 |
C6—N2 | 1.430 (5) | C17—H17B | 0.9600 |
C6—H6A | 0.9700 | C17—H17C | 0.9600 |
C6—H6B | 0.9700 | C18—H18A | 0.9600 |
C7—O1 | 1.229 (4) | C18—H18B | 0.9600 |
C7—N2 | 1.343 (5) | C18—H18C | 0.9600 |
C7—N3 | 1.346 (5) | C19—H19A | 0.9600 |
C8—N3 | 1.446 (6) | C19—H19B | 0.9600 |
C8—C9 | 1.478 (6) | C19—H19C | 0.9600 |
C8—H8A | 0.9700 | C20—H20A | 0.9600 |
C8—H8B | 0.9700 | C20—H20B | 0.9600 |
C9—Cl3 | 1.796 (5) | C20—H20C | 0.9600 |
C9—H9A | 0.9700 | C21—H21A | 0.9600 |
C9—H9B | 0.9700 | C21—H21B | 0.9600 |
C10—C15 | 1.408 (5) | C21—H21C | 0.9600 |
C10—C11 | 1.449 (5) | C22—Cl6 | 1.734 (5) |
C10—C16 | 1.510 (5) | C22—Cl4 | 1.748 (5) |
C10—Ru1 | 2.174 (4) | C22—Cl5 | 1.758 (6) |
C11—C12 | 1.423 (5) | C22—H22 | 0.9800 |
C11—C17 | 1.491 (6) | Cl1—Ru1 | 2.4072 (10) |
C11—Ru1 | 2.192 (4) | Cl2—Ru1 | 2.4176 (9) |
C12—C13 | 1.435 (6) | N1—Ru1 | 2.133 (3) |
C12—C18 | 1.507 (6) | N2—H2A | 0.8600 |
C12—Ru1 | 2.198 (4) | N3—H3A | 0.8600 |
C13—C14 | 1.414 (6) | ||
N1—C1—C2 | 122.7 (3) | H17A—C17—H17B | 109.5 |
N1—C1—H1 | 118.7 | C11—C17—H17C | 109.5 |
C2—C1—H1 | 118.7 | H17A—C17—H17C | 109.5 |
C1—C2—C3 | 120.0 (3) | H17B—C17—H17C | 109.5 |
C1—C2—H2 | 120.0 | C12—C18—H18A | 109.5 |
C3—C2—H2 | 120.0 | C12—C18—H18B | 109.5 |
C4—C3—C2 | 117.4 (3) | H18A—C18—H18B | 109.5 |
C4—C3—C6 | 124.0 (3) | C12—C18—H18C | 109.5 |
C2—C3—C6 | 118.5 (3) | H18A—C18—H18C | 109.5 |
C5—C4—C3 | 119.7 (3) | H18B—C18—H18C | 109.5 |
C5—C4—H4 | 120.1 | C13—C19—H19A | 109.5 |
C3—C4—H4 | 120.1 | C13—C19—H19B | 109.5 |
N1—C5—C4 | 123.2 (3) | H19A—C19—H19B | 109.5 |
N1—C5—H5 | 118.4 | C13—C19—H19C | 109.5 |
C4—C5—H5 | 118.4 | H19A—C19—H19C | 109.5 |
N2—C6—C3 | 116.1 (4) | H19B—C19—H19C | 109.5 |
N2—C6—H6A | 108.3 | C14—C20—H20A | 109.5 |
C3—C6—H6A | 108.3 | C14—C20—H20B | 109.5 |
N2—C6—H6B | 108.3 | H20A—C20—H20B | 109.5 |
C3—C6—H6B | 108.3 | C14—C20—H20C | 109.5 |
H6A—C6—H6B | 107.4 | H20A—C20—H20C | 109.5 |
O1—C7—N2 | 122.2 (3) | H20B—C20—H20C | 109.5 |
O1—C7—N3 | 121.7 (4) | C15—C21—H21A | 109.5 |
N2—C7—N3 | 116.1 (3) | C15—C21—H21B | 109.5 |
N3—C8—C9 | 109.9 (4) | H21A—C21—H21B | 109.5 |
N3—C8—H8A | 109.7 | C15—C21—H21C | 109.5 |
C9—C8—H8A | 109.7 | H21A—C21—H21C | 109.5 |
N3—C8—H8B | 109.7 | H21B—C21—H21C | 109.5 |
C9—C8—H8B | 109.7 | Cl6—C22—Cl4 | 111.9 (3) |
H8A—C8—H8B | 108.2 | Cl6—C22—Cl5 | 110.0 (3) |
C8—C9—Cl3 | 109.5 (3) | Cl4—C22—Cl5 | 108.8 (3) |
C8—C9—H9A | 109.8 | Cl6—C22—H22 | 108.7 |
Cl3—C9—H9A | 109.8 | Cl4—C22—H22 | 108.7 |
C8—C9—H9B | 109.8 | Cl5—C22—H22 | 108.7 |
Cl3—C9—H9B | 109.8 | C1—N1—C5 | 116.9 (3) |
H9A—C9—H9B | 108.2 | C1—N1—Ru1 | 121.6 (2) |
C15—C10—C11 | 120.7 (3) | C5—N1—Ru1 | 121.0 (2) |
C15—C10—C16 | 120.0 (3) | C7—N2—C6 | 120.8 (3) |
C11—C10—C16 | 119.3 (3) | C7—N2—H2A | 119.6 |
C15—C10—Ru1 | 71.9 (2) | C6—N2—H2A | 119.6 |
C11—C10—Ru1 | 71.3 (2) | C7—N3—C8 | 123.0 (4) |
C16—C10—Ru1 | 129.5 (3) | C7—N3—H3A | 118.5 |
C12—C11—C10 | 118.5 (3) | C8—N3—H3A | 118.5 |
C12—C11—C17 | 120.2 (4) | N1—Ru1—C10 | 89.18 (12) |
C10—C11—C17 | 121.2 (4) | N1—Ru1—C15 | 111.30 (12) |
C12—C11—Ru1 | 71.3 (2) | C10—Ru1—C15 | 37.62 (14) |
C10—C11—Ru1 | 70.0 (2) | N1—Ru1—C11 | 95.27 (13) |
C17—C11—Ru1 | 130.5 (3) | C10—Ru1—C11 | 38.75 (14) |
C11—C12—C13 | 121.2 (3) | C15—Ru1—C11 | 68.98 (14) |
C11—C12—C18 | 119.7 (4) | N1—Ru1—C13 | 163.60 (13) |
C13—C12—C18 | 119.1 (4) | C10—Ru1—C13 | 81.75 (14) |
C11—C12—Ru1 | 70.9 (2) | C15—Ru1—C13 | 68.85 (14) |
C13—C12—Ru1 | 70.8 (2) | C11—Ru1—C13 | 69.16 (15) |
C18—C12—Ru1 | 130.9 (3) | N1—Ru1—C12 | 125.62 (13) |
C14—C13—C12 | 119.1 (4) | C10—Ru1—C12 | 68.74 (14) |
C14—C13—C19 | 121.6 (4) | C15—Ru1—C12 | 80.87 (14) |
C12—C13—C19 | 119.3 (4) | C11—Ru1—C12 | 37.82 (14) |
C14—C13—Ru1 | 72.2 (2) | C13—Ru1—C12 | 38.13 (15) |
C12—C13—Ru1 | 71.1 (2) | N1—Ru1—C14 | 148.47 (13) |
C19—C13—Ru1 | 127.6 (3) | C10—Ru1—C14 | 68.22 (14) |
C13—C14—C15 | 120.6 (3) | C15—Ru1—C14 | 38.12 (14) |
C13—C14—C20 | 120.9 (4) | C11—Ru1—C14 | 80.92 (14) |
C15—C14—C20 | 118.5 (4) | C13—Ru1—C14 | 37.39 (15) |
C13—C14—Ru1 | 70.42 (19) | C12—Ru1—C14 | 67.60 (14) |
C15—C14—Ru1 | 69.99 (18) | N1—Ru1—Cl1 | 86.60 (8) |
C20—C14—Ru1 | 131.1 (3) | C10—Ru1—Cl1 | 123.07 (10) |
C10—C15—C14 | 119.7 (3) | C15—Ru1—Cl1 | 93.15 (10) |
C10—C15—C21 | 121.0 (4) | C11—Ru1—Cl1 | 161.48 (10) |
C14—C15—C21 | 119.2 (3) | C13—Ru1—Cl1 | 109.80 (11) |
C10—C15—Ru1 | 70.52 (19) | C12—Ru1—Cl1 | 147.30 (11) |
C14—C15—Ru1 | 71.89 (19) | C14—Ru1—Cl1 | 87.87 (10) |
C21—C15—Ru1 | 128.4 (3) | N1—Ru1—Cl2 | 85.37 (8) |
C10—C16—H16A | 109.5 | C10—Ru1—Cl2 | 146.83 (10) |
C10—C16—H16B | 109.5 | C15—Ru1—Cl2 | 163.25 (10) |
H16A—C16—H16B | 109.5 | C11—Ru1—Cl2 | 109.23 (10) |
C10—C16—H16C | 109.5 | C13—Ru1—Cl2 | 94.75 (11) |
H16A—C16—H16C | 109.5 | C12—Ru1—Cl2 | 88.16 (10) |
H16B—C16—H16C | 109.5 | C14—Ru1—Cl2 | 125.58 (11) |
C11—C17—H17A | 109.5 | Cl1—Ru1—Cl2 | 89.28 (3) |
C11—C17—H17B | 109.5 | ||
N1—C1—C2—C3 | 0.3 (6) | C14—C15—Ru1—C10 | 132.0 (3) |
C1—C2—C3—C4 | −2.2 (6) | C21—C15—Ru1—C10 | −114.7 (4) |
C1—C2—C3—C6 | 174.7 (4) | C10—C15—Ru1—C11 | −29.5 (2) |
C2—C3—C4—C5 | 1.6 (6) | C14—C15—Ru1—C11 | 102.5 (2) |
C6—C3—C4—C5 | −175.1 (4) | C21—C15—Ru1—C11 | −144.2 (4) |
C3—C4—C5—N1 | 1.0 (6) | C10—C15—Ru1—C13 | −104.5 (2) |
C4—C3—C6—N2 | −23.1 (6) | C14—C15—Ru1—C13 | 27.5 (2) |
C2—C3—C6—N2 | 160.2 (4) | C21—C15—Ru1—C13 | 140.8 (4) |
N3—C8—C9—Cl3 | 178.7 (3) | C10—C15—Ru1—C12 | −66.9 (2) |
C15—C10—C11—C12 | −0.2 (5) | C14—C15—Ru1—C12 | 65.1 (2) |
C16—C10—C11—C12 | 179.6 (3) | C21—C15—Ru1—C12 | 178.5 (4) |
Ru1—C10—C11—C12 | 54.1 (3) | C10—C15—Ru1—C14 | −132.0 (3) |
C15—C10—C11—C17 | 179.7 (3) | C21—C15—Ru1—C14 | 113.3 (4) |
C16—C10—C11—C17 | −0.5 (5) | C10—C15—Ru1—Cl1 | 145.5 (2) |
Ru1—C10—C11—C17 | −126.0 (3) | C14—C15—Ru1—Cl1 | −82.5 (2) |
C15—C10—C11—Ru1 | −54.3 (3) | C21—C15—Ru1—Cl1 | 30.8 (4) |
C16—C10—C11—Ru1 | 125.5 (3) | C10—C15—Ru1—Cl2 | −116.5 (4) |
C10—C11—C12—C13 | −1.6 (5) | C14—C15—Ru1—Cl2 | 15.5 (5) |
C17—C11—C12—C13 | 178.5 (3) | C21—C15—Ru1—Cl2 | 128.8 (4) |
Ru1—C11—C12—C13 | 51.9 (3) | C12—C11—Ru1—N1 | 146.6 (2) |
C10—C11—C12—C18 | 179.8 (3) | C10—C11—Ru1—N1 | −82.1 (2) |
C17—C11—C12—C18 | −0.2 (5) | C17—C11—Ru1—N1 | 32.4 (4) |
Ru1—C11—C12—C18 | −126.8 (3) | C12—C11—Ru1—C10 | −131.3 (3) |
C10—C11—C12—Ru1 | −53.4 (3) | C17—C11—Ru1—C10 | 114.5 (5) |
C17—C11—C12—Ru1 | 126.6 (3) | C12—C11—Ru1—C15 | −102.6 (2) |
C11—C12—C13—C14 | 4.0 (5) | C10—C11—Ru1—C15 | 28.7 (2) |
C18—C12—C13—C14 | −177.3 (3) | C17—C11—Ru1—C15 | 143.2 (4) |
Ru1—C12—C13—C14 | 55.9 (3) | C12—C11—Ru1—C13 | −28.1 (2) |
C11—C12—C13—C19 | −175.1 (3) | C10—C11—Ru1—C13 | 103.2 (2) |
C18—C12—C13—C19 | 3.5 (5) | C17—C11—Ru1—C13 | −142.3 (4) |
Ru1—C12—C13—C19 | −123.2 (4) | C10—C11—Ru1—C12 | 131.3 (3) |
C11—C12—C13—Ru1 | −51.9 (3) | C17—C11—Ru1—C12 | −114.2 (5) |
C18—C12—C13—Ru1 | 126.8 (3) | C12—C11—Ru1—C14 | −64.9 (2) |
C12—C13—C14—C15 | −4.6 (5) | C10—C11—Ru1—C14 | 66.4 (2) |
C19—C13—C14—C15 | 174.5 (4) | C17—C11—Ru1—C14 | −179.2 (4) |
Ru1—C13—C14—C15 | 50.8 (3) | C12—C11—Ru1—Cl1 | −118.4 (3) |
C12—C13—C14—C20 | 177.7 (3) | C10—C11—Ru1—Cl1 | 12.9 (5) |
C19—C13—C14—C20 | −3.2 (6) | C17—C11—Ru1—Cl1 | 127.4 (4) |
Ru1—C13—C14—C20 | −126.9 (4) | C12—C11—Ru1—Cl2 | 59.7 (2) |
C12—C13—C14—Ru1 | −55.4 (3) | C10—C11—Ru1—Cl2 | −169.01 (18) |
C19—C13—C14—Ru1 | 123.8 (4) | C17—C11—Ru1—Cl2 | −54.5 (4) |
C11—C10—C15—C14 | −0.4 (5) | C14—C13—Ru1—N1 | −121.7 (5) |
C16—C10—C15—C14 | 179.8 (3) | C12—C13—Ru1—N1 | 8.8 (6) |
Ru1—C10—C15—C14 | −54.4 (3) | C19—C13—Ru1—N1 | 121.7 (5) |
C11—C10—C15—C21 | 177.8 (3) | C14—C13—Ru1—C10 | −64.7 (2) |
C16—C10—C15—C21 | −2.0 (5) | C12—C13—Ru1—C10 | 65.9 (2) |
Ru1—C10—C15—C21 | 123.7 (3) | C19—C13—Ru1—C10 | 178.7 (4) |
C11—C10—C15—Ru1 | 54.1 (3) | C14—C13—Ru1—C15 | −28.0 (2) |
C16—C10—C15—Ru1 | −125.8 (3) | C12—C13—Ru1—C15 | 102.6 (2) |
C13—C14—C15—C10 | 2.8 (5) | C19—C13—Ru1—C15 | −144.6 (4) |
C20—C14—C15—C10 | −179.4 (3) | C14—C13—Ru1—C11 | −102.7 (3) |
Ru1—C14—C15—C10 | 53.8 (3) | C12—C13—Ru1—C11 | 27.9 (2) |
C13—C14—C15—C21 | −175.4 (4) | C19—C13—Ru1—C11 | 140.7 (4) |
C20—C14—C15—C21 | 2.4 (5) | C14—C13—Ru1—C12 | −130.6 (3) |
Ru1—C14—C15—C21 | −124.4 (3) | C19—C13—Ru1—C12 | 112.9 (5) |
C13—C14—C15—Ru1 | −51.0 (3) | C12—C13—Ru1—C14 | 130.6 (3) |
C20—C14—C15—Ru1 | 126.8 (3) | C19—C13—Ru1—C14 | −116.6 (5) |
C2—C1—N1—C5 | 2.2 (5) | C14—C13—Ru1—Cl1 | 57.6 (2) |
C2—C1—N1—Ru1 | −169.6 (3) | C12—C13—Ru1—Cl1 | −171.85 (19) |
C4—C5—N1—C1 | −2.8 (5) | C19—C13—Ru1—Cl1 | −59.0 (4) |
C4—C5—N1—Ru1 | 169.0 (3) | C14—C13—Ru1—Cl2 | 148.5 (2) |
O1—C7—N2—C6 | −13.3 (6) | C12—C13—Ru1—Cl2 | −80.9 (2) |
N3—C7—N2—C6 | 165.5 (3) | C19—C13—Ru1—Cl2 | 32.0 (4) |
C3—C6—N2—C7 | 90.2 (5) | C11—C12—Ru1—N1 | −42.4 (3) |
O1—C7—N3—C8 | −6.5 (6) | C13—C12—Ru1—N1 | −176.9 (2) |
N2—C7—N3—C8 | 174.6 (4) | C18—C12—Ru1—N1 | 70.8 (4) |
C9—C8—N3—C7 | −79.5 (5) | C11—C12—Ru1—C10 | 30.3 (2) |
C1—N1—Ru1—C10 | 77.1 (3) | C13—C12—Ru1—C10 | −104.3 (2) |
C5—N1—Ru1—C10 | −94.3 (3) | C18—C12—Ru1—C10 | 143.5 (4) |
C1—N1—Ru1—C15 | 46.0 (3) | C11—C12—Ru1—C15 | 67.3 (2) |
C5—N1—Ru1—C15 | −125.4 (3) | C13—C12—Ru1—C15 | −67.2 (2) |
C1—N1—Ru1—C11 | 115.4 (3) | C18—C12—Ru1—C15 | −179.5 (4) |
C5—N1—Ru1—C11 | −56.0 (3) | C13—C12—Ru1—C11 | −134.6 (3) |
C1—N1—Ru1—C13 | 133.3 (5) | C18—C12—Ru1—C11 | 113.2 (5) |
C5—N1—Ru1—C13 | −38.1 (6) | C11—C12—Ru1—C13 | 134.6 (3) |
C1—N1—Ru1—C12 | 140.0 (3) | C18—C12—Ru1—C13 | −112.2 (5) |
C5—N1—Ru1—C12 | −31.4 (3) | C11—C12—Ru1—C14 | 104.6 (2) |
C1—N1—Ru1—C14 | 34.2 (4) | C13—C12—Ru1—C14 | −29.9 (2) |
C5—N1—Ru1—C14 | −137.2 (3) | C18—C12—Ru1—C14 | −142.2 (4) |
C1—N1—Ru1—Cl1 | −46.1 (3) | C11—C12—Ru1—Cl1 | 148.85 (18) |
C5—N1—Ru1—Cl1 | 142.5 (3) | C13—C12—Ru1—Cl1 | 14.3 (3) |
C1—N1—Ru1—Cl2 | −135.6 (3) | C18—C12—Ru1—Cl1 | −98.0 (4) |
C5—N1—Ru1—Cl2 | 53.0 (3) | C11—C12—Ru1—Cl2 | −125.4 (2) |
C15—C10—Ru1—N1 | −127.9 (2) | C13—C12—Ru1—Cl2 | 100.1 (2) |
C11—C10—Ru1—N1 | 99.5 (2) | C18—C12—Ru1—Cl2 | −12.2 (4) |
C16—C10—Ru1—N1 | −13.5 (3) | C13—C14—Ru1—N1 | 152.7 (2) |
C11—C10—Ru1—C15 | −132.7 (3) | C15—C14—Ru1—N1 | 17.9 (4) |
C16—C10—Ru1—C15 | 114.4 (4) | C20—C14—Ru1—N1 | −92.9 (4) |
C15—C10—Ru1—C11 | 132.7 (3) | C13—C14—Ru1—C10 | 105.5 (3) |
C16—C10—Ru1—C11 | −112.9 (4) | C15—C14—Ru1—C10 | −29.2 (2) |
C15—C10—Ru1—C13 | 65.9 (2) | C20—C14—Ru1—C10 | −140.1 (4) |
C11—C10—Ru1—C13 | −66.8 (2) | C13—C14—Ru1—C15 | 134.8 (3) |
C16—C10—Ru1—C13 | −179.8 (4) | C20—C14—Ru1—C15 | −110.8 (5) |
C15—C10—Ru1—C12 | 103.1 (2) | C13—C14—Ru1—C11 | 67.4 (2) |
C11—C10—Ru1—C12 | −29.6 (2) | C15—C14—Ru1—C11 | −67.4 (2) |
C16—C10—Ru1—C12 | −142.6 (4) | C20—C14—Ru1—C11 | −178.2 (4) |
C15—C10—Ru1—C14 | 29.6 (2) | C15—C14—Ru1—C13 | −134.8 (3) |
C11—C10—Ru1—C14 | −103.1 (2) | C20—C14—Ru1—C13 | 114.4 (5) |
C16—C10—Ru1—C14 | 144.0 (4) | C13—C14—Ru1—C12 | 30.5 (2) |
C15—C10—Ru1—Cl1 | −42.5 (2) | C15—C14—Ru1—C12 | −104.3 (2) |
C11—C10—Ru1—Cl1 | −175.13 (17) | C20—C14—Ru1—C12 | 144.9 (4) |
C16—C10—Ru1—Cl1 | 71.9 (4) | C13—C14—Ru1—Cl1 | −127.4 (2) |
C15—C10—Ru1—Cl2 | 151.89 (18) | C15—C14—Ru1—Cl1 | 97.8 (2) |
C11—C10—Ru1—Cl2 | 19.2 (3) | C20—C14—Ru1—Cl1 | −13.0 (4) |
C16—C10—Ru1—Cl2 | −93.7 (4) | C13—C14—Ru1—Cl2 | −39.8 (3) |
C10—C15—Ru1—N1 | 57.9 (2) | C15—C14—Ru1—Cl2 | −174.57 (17) |
C14—C15—Ru1—N1 | −170.1 (2) | C20—C14—Ru1—Cl2 | 74.6 (4) |
C21—C15—Ru1—N1 | −56.8 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2a···Cl2i | 0.86 | 2.62 | 3.270 (3) | 133 |
N3—H3a···Cl1i | 0.86 | 2.49 | 3.226 (4) | 144 |
C22—H22···O1ii | 0.98 | 1.95 | 2.908 (5) | 165 |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) −x+1, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [RuCl2(C12H18)(C9H12ClN3O)]·CHCl3 |
Mr | 667.27 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 173 |
a, b, c (Å) | 15.0947 (16), 13.3402 (10), 15.4847 (16) |
β (°) | 116.026 (11) |
V (Å3) | 2801.9 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.15 |
Crystal size (mm) | 0.18 × 0.16 × 0.15 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | Part of the refinement model (ΔF) (Walker & Stuart, 1983) |
Tmin, Tmax | 0.457, 0.822 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21527, 5514, 3710 |
Rint | 0.065 |
(sin θ/λ)max (Å−1) | 0.620 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.088, 0.89 |
No. of reflections | 5514 |
No. of parameters | 304 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.85, −0.64 |
Computer programs: SMART (Bruker, 1999), SMART and SAINT (Bruker, 1999), SAINT (Bruker, 1999), SIR97 (Altomare et al., 1999), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2a···Cl2i | 0.86 | 2.620 | 3.270 (3) | 133.0 |
N3—H3a···Cl1i | 0.86 | 2.490 | 3.226 (4) | 144.3 |
C22—H22···O1ii | 0.98 | 1.950 | 2.908 (5) | 165.3 |
Symmetry codes: (i) −x, −y+2, −z+1; (ii) −x+1, −y+2, −z+1. |
Acknowledgements
A generous loan of ruthenium chloride hydrate from the Johnson Matthey Technology Centre is gratefully acknowledged.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Introduction of biologically active components into arene ruthenium(II) complexes, promising new class of metal-based drugs (Süss-Fink, 2010), is often performed by coordination of functionalized ligands. Therefore, it is not surprising that pyridyl-functionalized ligands have been coupled to arene ruthenium(II) units to generate multi-functional metallo-drugs (Therrien & Smith, 2011). In this respect, the pyridyl-functionalized ligand 1-(chloroethyl)-3-(pyridin-4-ylmethyl)urea, an antileukemic agent (Nakao et al., 1974), has been coordinated to (η6-hexamethylbenzene)RuCl2 unit (Scheme 1). The single-crystal X-ray structure analysis of the neutral complex dichlorido{1-(chloroethyl)-3-(pyridin-4-ylmethyl)urea-κN} (η6-hexamethylbenzene)ruthenium(II) is presented.
The complex shows a three-legged piano-stool geometry with the RuII metal center being surrounded by a hexamethylbenzene ligand, two terminal chlorido and a N-coordinated pyridyl urea ligand, see Fig. 1. The pyridyl-functionalized ligand, 1-(chloroethyl)-3-(pyridin-4-ylmethyl)urea, acts as a monodentate ligand and the Ru—N distance at 2.137 (3) Å is comparable to those found in analogous (η6-arene)RuCl2(pyridyl-functionalized) complexes (Govender et al., 2009; Auzias et al., 2008; Auzias et al., 2009). The aromatic ring of the hexamethylbenzene is planar and the Ru-centroid distance is 1.670 Å (centroid being defined by C10 to C15). Otherwise, the Ru—Cl distances are 2.4066 (11) and 2.4173 (10) Å, respectively, which are similar to those found in other dichlorido arene ruthenium complexes (Therrien & Süss-Fink, 2004; Therrien et al., 2004).
In the crystal packing, both chlorido ligands are involved in H-bonded interaction with the NH moieties of a neighbouring molecule, thus forming a symmetry-related dimeric structure (Fig. 2). The N—Cl separations are respectively 3.270 (3) Å (N—H···Cl = 133.0°) for N(2)—Cl(2) and 3.226 (4) Å (N—H···Cl = 144.3°) for N(3)—Cl(1). In addition, the carbonyl group of urea interacts with chloroform: The O—C distance being 2.908 (5) Å with a C(22)—H(22)···O(1) angle of 165.3°.