organic compounds
(5E)-5-(2,4-Dichlorobenzylidene)-2-(piperidin-1-yl)-1,3-thiazol-4(5H)-one
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Chemistry, Mangalore University, Mangalagangothri 574 199, Mangalore, Karnataka, India
*Correspondence e-mail: hkfun@usm.my
In the title compound, C15H14Cl2N2OS, the piperidine ring adopts a chair conformation. The dihedral angle between the thiazolidine ring and the dichlorobenzene ring is 9.30 (4)°; this near coplanar conformation is stabilized by the formation of an intramolecular C—H⋯S hydrogen bond, which generates an S(6) ring. In the crystal, molecules are linked by C—H⋯O hydrogen bonds, forming [001] chains. Weak π–π interactions [centroid–centroid separation = 3.5460 (5) Å] consolidate the structure.
Related literature
For details and properties of the 4-thiazolidinone ring system, see: Lesyk & Zimenkovsky (2004); Lesyk et al. (2007); Havrylyuk et al. (2009); Ahn et al. (2006); Park et al. (2008); Geronikaki et al. (2008); Zimenkovsky et al. (2005). For ring puckering, see: Cremer & Pople (1975). For hydrogen-bond motifs, see: Bernstein et al. (1995). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811040785/hb6435sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811040785/hb6435Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811040785/hb6435Isup3.cml
An equimolar mixture of 2-(4-methylsulfanylphenyl)acetohydrazide and 4-chlorobenzaldehyde was refluxed for four hours in the presence of few drops of acid catalyst and ethanol as solvent. The compound obtained was filtered, washed, dried and recrystalised from ethanol to yield brown blocks of (I).
All hydrogen atoms were positioned geometrically [ C–H = 0.95 or 0.99 Å] and were refined using a riding model, with Uiso(H) = 1.2 Ueq(C).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C15H14Cl2N2OS | F(000) = 1408 |
Mr = 341.24 | Dx = 1.530 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 9844 reflections |
a = 28.5303 (3) Å | θ = 2.7–35.2° |
b = 7.4915 (1) Å | µ = 0.58 mm−1 |
c = 15.4789 (2) Å | T = 100 K |
β = 116.407 (1)° | Block, brown |
V = 2963.17 (6) Å3 | 0.44 × 0.25 × 0.13 mm |
Z = 8 |
Bruker SMART APEXII CCD diffractometer | 6673 independent reflections |
Radiation source: fine-focus sealed tube | 5955 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ϕ and ω scans | θmax = 35.4°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −45→46 |
Tmin = 0.783, Tmax = 0.928 | k = −12→12 |
46944 measured reflections | l = −25→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.026 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.074 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0364P)2 + 1.7424P] where P = (Fo2 + 2Fc2)/3 |
6673 reflections | (Δ/σ)max = 0.002 |
190 parameters | Δρmax = 0.52 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C15H14Cl2N2OS | V = 2963.17 (6) Å3 |
Mr = 341.24 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 28.5303 (3) Å | µ = 0.58 mm−1 |
b = 7.4915 (1) Å | T = 100 K |
c = 15.4789 (2) Å | 0.44 × 0.25 × 0.13 mm |
β = 116.407 (1)° |
Bruker SMART APEXII CCD diffractometer | 6673 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 5955 reflections with I > 2σ(I) |
Tmin = 0.783, Tmax = 0.928 | Rint = 0.024 |
46944 measured reflections |
R[F2 > 2σ(F2)] = 0.026 | 0 restraints |
wR(F2) = 0.074 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.52 e Å−3 |
6673 reflections | Δρmin = −0.19 e Å−3 |
190 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.430128 (8) | 0.28966 (3) | 0.729616 (15) | 0.02400 (5) | |
Cl2 | 0.269296 (8) | 0.51920 (3) | 0.790208 (13) | 0.02382 (5) | |
S1 | 0.176998 (7) | 0.57324 (3) | 0.374212 (12) | 0.01596 (4) | |
O1 | 0.11470 (2) | 0.76041 (9) | 0.52929 (4) | 0.02178 (12) | |
N1 | 0.09082 (3) | 0.72148 (9) | 0.36763 (5) | 0.01686 (11) | |
N2 | 0.08873 (3) | 0.66216 (10) | 0.21783 (4) | 0.01825 (12) | |
C1 | 0.28809 (3) | 0.46653 (11) | 0.54975 (5) | 0.01796 (13) | |
H1A | 0.2688 | 0.4850 | 0.4822 | 0.022* | |
C2 | 0.33866 (3) | 0.40104 (11) | 0.58547 (6) | 0.01884 (13) | |
H2A | 0.3540 | 0.3774 | 0.5433 | 0.023* | |
C3 | 0.36659 (3) | 0.37051 (10) | 0.68400 (6) | 0.01726 (12) | |
C4 | 0.34481 (3) | 0.40355 (11) | 0.74672 (5) | 0.01740 (12) | |
H4A | 0.3639 | 0.3797 | 0.8138 | 0.021* | |
C5 | 0.29438 (3) | 0.47245 (10) | 0.70876 (5) | 0.01601 (12) | |
C6 | 0.26411 (3) | 0.50678 (10) | 0.60961 (5) | 0.01517 (12) | |
C7 | 0.21245 (3) | 0.58738 (10) | 0.57455 (5) | 0.01636 (12) | |
H7A | 0.2028 | 0.6221 | 0.6235 | 0.020* | |
C8 | 0.17611 (3) | 0.62056 (10) | 0.48355 (5) | 0.01523 (12) | |
C9 | 0.12450 (3) | 0.70822 (10) | 0.46399 (5) | 0.01629 (12) | |
C10 | 0.11223 (3) | 0.66071 (10) | 0.31348 (5) | 0.01553 (12) | |
C11 | 0.03308 (3) | 0.71217 (13) | 0.16554 (6) | 0.02211 (15) | |
H11A | 0.0227 | 0.7796 | 0.2093 | 0.027* | |
H11B | 0.0114 | 0.6027 | 0.1450 | 0.027* | |
C12 | 0.02289 (3) | 0.82567 (13) | 0.07750 (6) | 0.02274 (15) | |
H12A | 0.0392 | 0.9444 | 0.0988 | 0.027* | |
H12B | −0.0153 | 0.8434 | 0.0394 | 0.027* | |
C13 | 0.04478 (3) | 0.73902 (13) | 0.01359 (6) | 0.02228 (15) | |
H13A | 0.0257 | 0.6267 | −0.0141 | 0.027* | |
H13B | 0.0398 | 0.8202 | −0.0403 | 0.027* | |
C14 | 0.10279 (3) | 0.69973 (12) | 0.07298 (6) | 0.01982 (14) | |
H14A | 0.1221 | 0.8133 | 0.0961 | 0.024* | |
H14B | 0.1165 | 0.6393 | 0.0320 | 0.024* | |
C15 | 0.11176 (4) | 0.58124 (12) | 0.15908 (6) | 0.02219 (15) | |
H15A | 0.0958 | 0.4627 | 0.1359 | 0.027* | |
H15B | 0.1498 | 0.5640 | 0.1991 | 0.027* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.01844 (8) | 0.02974 (10) | 0.02435 (9) | 0.00495 (7) | 0.01001 (7) | 0.00259 (7) |
Cl2 | 0.01920 (9) | 0.04116 (12) | 0.01293 (7) | 0.00453 (7) | 0.00879 (6) | 0.00332 (7) |
S1 | 0.01586 (8) | 0.02028 (8) | 0.01193 (7) | 0.00101 (6) | 0.00634 (6) | −0.00006 (6) |
O1 | 0.0210 (3) | 0.0317 (3) | 0.0141 (2) | 0.0032 (2) | 0.0092 (2) | −0.0011 (2) |
N1 | 0.0159 (3) | 0.0229 (3) | 0.0124 (2) | 0.0001 (2) | 0.0069 (2) | 0.0001 (2) |
N2 | 0.0163 (3) | 0.0272 (3) | 0.0112 (2) | 0.0023 (2) | 0.0060 (2) | 0.0005 (2) |
C1 | 0.0199 (3) | 0.0215 (3) | 0.0134 (3) | 0.0007 (3) | 0.0083 (2) | 0.0006 (2) |
C2 | 0.0208 (3) | 0.0212 (3) | 0.0169 (3) | 0.0014 (3) | 0.0105 (3) | 0.0005 (2) |
C3 | 0.0165 (3) | 0.0178 (3) | 0.0180 (3) | 0.0004 (2) | 0.0081 (2) | 0.0008 (2) |
C4 | 0.0167 (3) | 0.0204 (3) | 0.0146 (3) | −0.0003 (2) | 0.0064 (2) | 0.0014 (2) |
C5 | 0.0164 (3) | 0.0203 (3) | 0.0125 (3) | −0.0014 (2) | 0.0075 (2) | 0.0005 (2) |
C6 | 0.0158 (3) | 0.0175 (3) | 0.0126 (3) | −0.0016 (2) | 0.0066 (2) | 0.0004 (2) |
C7 | 0.0166 (3) | 0.0201 (3) | 0.0127 (3) | −0.0010 (2) | 0.0068 (2) | 0.0003 (2) |
C8 | 0.0159 (3) | 0.0178 (3) | 0.0126 (3) | −0.0014 (2) | 0.0068 (2) | −0.0002 (2) |
C9 | 0.0164 (3) | 0.0196 (3) | 0.0133 (3) | −0.0010 (2) | 0.0070 (2) | 0.0001 (2) |
C10 | 0.0150 (3) | 0.0189 (3) | 0.0125 (3) | −0.0008 (2) | 0.0060 (2) | 0.0003 (2) |
C11 | 0.0155 (3) | 0.0365 (4) | 0.0139 (3) | 0.0009 (3) | 0.0061 (2) | 0.0022 (3) |
C12 | 0.0190 (3) | 0.0339 (4) | 0.0148 (3) | 0.0050 (3) | 0.0070 (3) | 0.0033 (3) |
C13 | 0.0230 (4) | 0.0303 (4) | 0.0133 (3) | 0.0015 (3) | 0.0078 (3) | 0.0010 (3) |
C14 | 0.0220 (3) | 0.0245 (4) | 0.0159 (3) | 0.0008 (3) | 0.0111 (3) | −0.0006 (3) |
C15 | 0.0252 (4) | 0.0291 (4) | 0.0138 (3) | 0.0072 (3) | 0.0100 (3) | 0.0015 (3) |
Cl1—C3 | 1.7357 (8) | C6—C7 | 1.4560 (11) |
Cl2—C5 | 1.7397 (7) | C7—C8 | 1.3498 (10) |
S1—C8 | 1.7402 (7) | C7—H7A | 0.9500 |
S1—C10 | 1.7839 (8) | C8—C9 | 1.5148 (11) |
O1—C9 | 1.2265 (9) | C11—C12 | 1.5207 (12) |
N1—C10 | 1.3186 (10) | C11—H11A | 0.9900 |
N1—C9 | 1.3722 (10) | C11—H11B | 0.9900 |
N2—C10 | 1.3261 (9) | C12—C13 | 1.5296 (12) |
N2—C15 | 1.4690 (10) | C12—H12A | 0.9900 |
N2—C11 | 1.4743 (11) | C12—H12B | 0.9900 |
C1—C2 | 1.3851 (11) | C13—C14 | 1.5223 (12) |
C1—C6 | 1.4075 (10) | C13—H13A | 0.9900 |
C1—H1A | 0.9500 | C13—H13B | 0.9900 |
C2—C3 | 1.3900 (11) | C14—C15 | 1.5252 (12) |
C2—H2A | 0.9500 | C14—H14A | 0.9900 |
C3—C4 | 1.3880 (11) | C14—H14B | 0.9900 |
C4—C5 | 1.3893 (11) | C15—H15A | 0.9900 |
C4—H4A | 0.9500 | C15—H15B | 0.9900 |
C5—C6 | 1.4102 (10) | ||
C8—S1—C10 | 88.74 (3) | N1—C10—S1 | 117.13 (5) |
C10—N1—C9 | 111.56 (6) | N2—C10—S1 | 118.84 (6) |
C10—N2—C15 | 122.99 (7) | N2—C11—C12 | 111.35 (7) |
C10—N2—C11 | 120.09 (6) | N2—C11—H11A | 109.4 |
C15—N2—C11 | 115.73 (6) | C12—C11—H11A | 109.4 |
C2—C1—C6 | 122.55 (7) | N2—C11—H11B | 109.4 |
C2—C1—H1A | 118.7 | C12—C11—H11B | 109.4 |
C6—C1—H1A | 118.7 | H11A—C11—H11B | 108.0 |
C1—C2—C3 | 118.91 (7) | C11—C12—C13 | 111.84 (7) |
C1—C2—H2A | 120.5 | C11—C12—H12A | 109.2 |
C3—C2—H2A | 120.5 | C13—C12—H12A | 109.2 |
C4—C3—C2 | 121.44 (7) | C11—C12—H12B | 109.2 |
C4—C3—Cl1 | 119.28 (6) | C13—C12—H12B | 109.2 |
C2—C3—Cl1 | 119.29 (6) | H12A—C12—H12B | 107.9 |
C3—C4—C5 | 118.17 (7) | C14—C13—C12 | 109.79 (6) |
C3—C4—H4A | 120.9 | C14—C13—H13A | 109.7 |
C5—C4—H4A | 120.9 | C12—C13—H13A | 109.7 |
C4—C5—C6 | 123.08 (7) | C14—C13—H13B | 109.7 |
C4—C5—Cl2 | 116.79 (5) | C12—C13—H13B | 109.7 |
C6—C5—Cl2 | 120.12 (6) | H13A—C13—H13B | 108.2 |
C1—C6—C5 | 115.83 (7) | C13—C14—C15 | 110.80 (7) |
C1—C6—C7 | 123.46 (7) | C13—C14—H14A | 109.5 |
C5—C6—C7 | 120.64 (7) | C15—C14—H14A | 109.5 |
C8—C7—C6 | 130.21 (7) | C13—C14—H14B | 109.5 |
C8—C7—H7A | 114.9 | C15—C14—H14B | 109.5 |
C6—C7—H7A | 114.9 | H14A—C14—H14B | 108.1 |
C7—C8—C9 | 121.03 (7) | N2—C15—C14 | 110.69 (7) |
C7—C8—S1 | 129.85 (6) | N2—C15—H15A | 109.5 |
C9—C8—S1 | 109.10 (5) | C14—C15—H15A | 109.5 |
O1—C9—N1 | 124.51 (7) | N2—C15—H15B | 109.5 |
O1—C9—C8 | 122.08 (7) | C14—C15—H15B | 109.5 |
N1—C9—C8 | 113.41 (6) | H15A—C15—H15B | 108.1 |
N1—C10—N2 | 124.03 (7) | ||
C6—C1—C2—C3 | 1.25 (12) | C7—C8—C9—O1 | 3.74 (12) |
C1—C2—C3—C4 | 0.26 (12) | S1—C8—C9—O1 | −177.51 (7) |
C1—C2—C3—Cl1 | −179.63 (6) | C7—C8—C9—N1 | −175.99 (7) |
C2—C3—C4—C5 | −1.49 (12) | S1—C8—C9—N1 | 2.77 (8) |
Cl1—C3—C4—C5 | 178.41 (6) | C9—N1—C10—N2 | −178.19 (8) |
C3—C4—C5—C6 | 1.30 (12) | C9—N1—C10—S1 | 1.36 (9) |
C3—C4—C5—Cl2 | −177.86 (6) | C15—N2—C10—N1 | −175.15 (8) |
C2—C1—C6—C5 | −1.41 (12) | C11—N2—C10—N1 | −8.17 (12) |
C2—C1—C6—C7 | 175.53 (8) | C15—N2—C10—S1 | 5.31 (11) |
C4—C5—C6—C1 | 0.10 (11) | C11—N2—C10—S1 | 172.29 (6) |
Cl2—C5—C6—C1 | 179.24 (6) | C8—S1—C10—N1 | 0.25 (7) |
C4—C5—C6—C7 | −176.93 (7) | C8—S1—C10—N2 | 179.82 (7) |
Cl2—C5—C6—C7 | 2.21 (10) | C10—N2—C11—C12 | 140.61 (8) |
C1—C6—C7—C8 | 7.99 (13) | C15—N2—C11—C12 | −51.50 (10) |
C5—C6—C7—C8 | −175.21 (8) | N2—C11—C12—C13 | 51.51 (10) |
C6—C7—C8—C9 | −179.51 (7) | C11—C12—C13—C14 | −55.21 (10) |
C6—C7—C8—S1 | 2.03 (13) | C12—C13—C14—C15 | 56.91 (10) |
C10—S1—C8—C7 | 177.01 (8) | C10—N2—C15—C14 | −139.08 (8) |
C10—S1—C8—C9 | −1.60 (5) | C11—N2—C15—C14 | 53.41 (10) |
C10—N1—C9—O1 | 177.67 (8) | C13—C14—C15—N2 | −55.37 (9) |
C10—N1—C9—C8 | −2.61 (9) |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1A···S1 | 0.95 | 2.49 | 3.2260 (8) | 134 |
C4—H4A···O1i | 0.95 | 2.40 | 3.3080 (9) | 160 |
C15—H15A···O1ii | 0.99 | 2.57 | 3.2778 (11) | 129 |
Symmetry codes: (i) −x+1/2, y−1/2, −z+3/2; (ii) x, −y+1, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C15H14Cl2N2OS |
Mr | 341.24 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 100 |
a, b, c (Å) | 28.5303 (3), 7.4915 (1), 15.4789 (2) |
β (°) | 116.407 (1) |
V (Å3) | 2963.17 (6) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.58 |
Crystal size (mm) | 0.44 × 0.25 × 0.13 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.783, 0.928 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 46944, 6673, 5955 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.815 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.026, 0.074, 1.03 |
No. of reflections | 6673 |
No. of parameters | 190 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.52, −0.19 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1A···S1 | 0.95 | 2.49 | 3.2260 (8) | 134 |
C4—H4A···O1i | 0.95 | 2.40 | 3.3080 (9) | 160 |
C15—H15A···O1ii | 0.99 | 2.57 | 3.2778 (11) | 129 |
Symmetry codes: (i) −x+1/2, y−1/2, −z+3/2; (ii) x, −y+1, z−1/2. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
HKF and MH thank the Malaysian Government and Universiti Sains Malaysia for the Research University grant No. 1001/PFIZIK/811160. MH also thanks Universiti Sains Malaysia for a post-doctoral research fellowship.
References
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The 4-thiazolidinone ring system is a core structure in various synthetic compounds displaying a broad spectrum of biological activities (Lesyk & Zimenkovsky, 2004), including an anticancer effect (Lesyk et al., 2007; Havrylyuk et al., 2009). The mechanisms of antitumor activity by 4-thiazolidinones and related heterocycles may be associated with their affinities to anticancer bio-targets, such as phosphatase of a regenerating liver (PRL-3) (Ahn et al., 2006; Park et al., 2008) and nonmembrane protein tyrosine phosphatase (SHP-2)(Geronikaki et al., 2008). 5-Arylidene derivatives were previously shown as the most active group of compounds with the anticancer activity among a large pool of 4-azolidone derivatives and analogs (Zimenkovsky et al., 2005). This prompted us to synthesize the title compound, (I), (Fig. 1).
The piperidine ((N2/C11–C15) ring adopts a chair conformation [Q = 0.5462 (10) Å; θ = 5.78 (10)° and ϕ = 206.6 (10)°; Cremer & Pople, 1975]. The central thiazolidine (S1/N1/C8–C10) ring makes dihedral angles of 21.18 (4)° and 9.30 (4)° with the terminal piperidine (N2/C11–C15) and phenyl (C1–C6) rings. The corresponding angle between the piperidine and phenyl (N2/C11–C15)/(C1–C6) rings is 13.69 (4)°. An intramolecular C1—H1A···S1 hydrogen bond generates an S(6) (Bernstein et al., 1995) ring motif.
In the crystal structure, (Fig. 2), the molecules are connected via intermolecular C—H···O (Table 1) hydrogen bonds forming one-dimensional supramolecular chains along the c-axis. The crystal structure is further stabilized by weak π–π interactions between the thiazolidine (Cg1; S1/N1/C8–C10) and phenyl (Cg3; C1–C6) rings [Cg1···Cg3 = 3.5460 (5) Å; 1/2-x, 3/2-y, 1-z].