organic compounds
[1-(3-Chlorophenyl)-1H-1,2,3-triazol-4-yl]methanol hemihydrate
aFundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos, Departamento de Sintese Organica, Manguinhos, 21041-250 Rio de Janeiro, RJ, Brazil, bCentro de Desenvolvimento Tecnológico em Saúde (CDTS), Fundação Oswaldo Cruz (FIOCRUZ), Casa Amarela, Campus de Manguinhos, Av. Brasil 4365, 21040-900 Rio de Janeiro, RJ, Brazil, cCHEMSOL, 1 Harcourt Road, Aberdeen AB15 5NY, Scotland, and dDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
The 9H8ClN3O·0.5H2O, comprises two independent 1,2,3-triazole molecules and a water molecule of crystallization. The dihedral angles between the six- and five-membered rings in the 1,2,3-triazole molecules are 12.71 (19) and 17.3 (2)°. The most significant different between them is found in the relative orientations of the terminal CH2OH groups with one being close to perpendicular to the five-membered ring [N—C—C—O torsion angle = 82.2 (5)°], while in the other molecule, a notable deviation from a perpendicular disposition is found [torsion angle = −60.3 (5)°]. Supramolecular chains feature in the crystal packing sustained by O—H⋯(O,N) interactions along the a-axis direction. The chains are connected via C—H⋯N interactions and the resultant layers stack along the b axis.
of the title hydrate, CRelated literature
For background to the synthesis, biological activity and structures of 1,2,3-triazole derivatives, see: Boechat et al. (2010, 2011); Costa et al. (2006a,b); Ferreira et al. (2007); Jordão et al. (2009). For the synthesis, see: Boechat et al. (2011). For additional geometric analysis, see: Spek (2009).
Experimental
Crystal data
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Refinement
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Data collection: COLLECT (Hooft, 1998); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997), QMol (Gans & Shalloway, 2001) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811041560/hb6439sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811041560/hb6439Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811041560/hb6439Isup3.cml
The compound, obtained as published (Boechat et al., 2011), was recrystallized from EtOH as a hemihydrate.
The C-bound H atoms were geometrically placed (C—H = 0.95–0.99 Å) and refined as riding with Uiso(H) = 1.2Ueq(C). The O—H H atoms were located from a difference map and refined with O—H = 0.84±0.01 Å, and with Uiso(H) = 1.5Ueq(O).
Data collection: COLLECT (Hooft, 1998); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); data reduction: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997), QMol (Gans & Shalloway, 2001) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. The molecular structures of the components comprising the asymmetric unit in (I) showing displacement ellipsoids at the 50% probability level. | |
Fig. 2. An overlay diagram of the two independent molecules in (I). The red and blue images illustrate the N1- and N3-containing molecules, respectively. | |
Fig. 3. A view of the supramolecular chain aligned along the a axis in (I) mediated by O—H···O (red dashed lines), O—H···N (blue) hydrogen bonds and C—H···O interactions (green). | |
Fig. 4. A view in projection down the a axis of the unit-cell contents in (I) showing the stacking of layers along the b axis. The O—H···O, O—H···N and C—H···O interactions are shown as orange, blue and green dashed lines, respectively. |
C9H8ClN3O·0.5H2O | Z = 4 |
Mr = 218.64 | F(000) = 452 |
Triclinic, P1 | Dx = 1.467 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.0078 (4) Å | Cell parameters from 19812 reflections |
b = 7.4897 (4) Å | θ = 2.9–27.5° |
c = 22.3145 (15) Å | µ = 0.36 mm−1 |
α = 88.818 (4)° | T = 120 K |
β = 89.901 (2)° | Plate, colourless |
γ = 80.493 (4)° | 0.18 × 0.18 × 0.02 mm |
V = 990.07 (11) Å3 |
Bruker–Nonius APEX II CCD camera on κ-goniostat diffractometer | 3909 independent reflections |
Radiation source: Bruker-Nonius FR591 rotating anode | 2948 reflections with I > 2σ(I) |
10cm confocal mirrors monochromator | Rint = 0.038 |
Detector resolution: 9.091 pixels mm-1 | θmax = 26.5°, θmin = 2.9° |
ϕ and ω scans | h = −7→7 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | k = −9→9 |
Tmin = 0.843, Tmax = 1.000 | l = −28→28 |
10830 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.064 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.163 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0446P)2 + 2.5602P] where P = (Fo2 + 2Fc2)/3 |
3909 reflections | (Δ/σ)max = 0.012 |
274 parameters | Δρmax = 0.41 e Å−3 |
5 restraints | Δρmin = −0.34 e Å−3 |
C9H8ClN3O·0.5H2O | γ = 80.493 (4)° |
Mr = 218.64 | V = 990.07 (11) Å3 |
Triclinic, P1 | Z = 4 |
a = 6.0078 (4) Å | Mo Kα radiation |
b = 7.4897 (4) Å | µ = 0.36 mm−1 |
c = 22.3145 (15) Å | T = 120 K |
α = 88.818 (4)° | 0.18 × 0.18 × 0.02 mm |
β = 89.901 (2)° |
Bruker–Nonius APEX II CCD camera on κ-goniostat diffractometer | 3909 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | 2948 reflections with I > 2σ(I) |
Tmin = 0.843, Tmax = 1.000 | Rint = 0.038 |
10830 measured reflections |
R[F2 > 2σ(F2)] = 0.064 | 5 restraints |
wR(F2) = 0.163 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.41 e Å−3 |
3909 reflections | Δρmin = −0.34 e Å−3 |
274 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.85344 (17) | 0.75800 (15) | 0.46687 (4) | 0.0449 (3) | |
O1 | 0.5639 (6) | 0.7737 (5) | 0.05307 (13) | 0.0595 (9) | |
H1O | 0.629 (9) | 0.747 (7) | 0.0204 (13) | 0.089* | |
N1 | 0.6411 (5) | 0.8503 (4) | 0.24523 (13) | 0.0297 (6) | |
N2 | 0.8433 (5) | 0.7528 (4) | 0.23011 (14) | 0.0386 (7) | |
N3 | 0.8614 (6) | 0.7674 (4) | 0.17193 (14) | 0.0424 (8) | |
C1 | 0.6580 (6) | 0.8250 (5) | 0.41004 (15) | 0.0304 (7) | |
C2 | 0.4384 (6) | 0.8954 (5) | 0.42488 (16) | 0.0343 (8) | |
H2 | 0.3932 | 0.9055 | 0.4657 | 0.041* | |
C3 | 0.2852 (6) | 0.9509 (5) | 0.37926 (15) | 0.0331 (8) | |
H3 | 0.1338 | 1.0005 | 0.3889 | 0.040* | |
C4 | 0.3494 (6) | 0.9352 (5) | 0.31987 (16) | 0.0317 (8) | |
H4 | 0.2426 | 0.9724 | 0.2889 | 0.038* | |
C5 | 0.5708 (6) | 0.8647 (4) | 0.30588 (15) | 0.0280 (7) | |
C6 | 0.7280 (6) | 0.8092 (5) | 0.35095 (15) | 0.0314 (8) | |
H6 | 0.8801 | 0.7614 | 0.3414 | 0.038* | |
C7 | 0.5315 (6) | 0.9254 (5) | 0.19577 (15) | 0.0322 (8) | |
H7 | 0.3870 | 0.9992 | 0.1940 | 0.039* | |
C8 | 0.6716 (7) | 0.8731 (5) | 0.14894 (16) | 0.0381 (9) | |
C9 | 0.6412 (8) | 0.9160 (6) | 0.08392 (17) | 0.0484 (11) | |
H9A | 0.5309 | 1.0289 | 0.0784 | 0.058* | |
H9B | 0.7867 | 0.9368 | 0.0665 | 0.058* | |
Cl2 | 0.7137 (2) | 0.31120 (15) | 0.43211 (4) | 0.0519 (3) | |
O2 | 1.1922 (7) | 0.3320 (5) | 0.04279 (18) | 0.0843 (14) | |
H2O | 1.219 (12) | 0.422 (6) | 0.062 (3) | 0.126* | |
N4 | 0.7744 (5) | 0.2978 (4) | 0.20400 (13) | 0.0306 (6) | |
N5 | 0.9702 (5) | 0.1798 (5) | 0.21008 (15) | 0.0433 (8) | |
N6 | 1.0590 (6) | 0.1604 (5) | 0.15647 (16) | 0.0485 (9) | |
C10 | 0.5956 (6) | 0.3531 (5) | 0.36144 (16) | 0.0348 (8) | |
C11 | 0.3706 (6) | 0.4305 (5) | 0.35577 (16) | 0.0359 (8) | |
H11 | 0.2793 | 0.4587 | 0.3902 | 0.043* | |
C12 | 0.2826 (6) | 0.4657 (5) | 0.29895 (17) | 0.0389 (9) | |
H12 | 0.1293 | 0.5210 | 0.2943 | 0.047* | |
C13 | 0.4137 (6) | 0.4217 (5) | 0.24830 (16) | 0.0318 (8) | |
H13 | 0.3506 | 0.4445 | 0.2093 | 0.038* | |
C14 | 0.6367 (6) | 0.3444 (4) | 0.25557 (16) | 0.0309 (8) | |
C15 | 0.7315 (6) | 0.3090 (5) | 0.31195 (16) | 0.0323 (8) | |
H15 | 0.8855 | 0.2558 | 0.3166 | 0.039* | |
C16 | 0.7421 (6) | 0.3525 (5) | 0.14617 (16) | 0.0350 (8) | |
H16 | 0.6188 | 0.4348 | 0.1298 | 0.042* | |
C17 | 0.9245 (7) | 0.2643 (5) | 0.11626 (18) | 0.0395 (9) | |
C18 | 0.9826 (8) | 0.2697 (6) | 0.05057 (19) | 0.0538 (12) | |
H18A | 0.9928 | 0.1471 | 0.0339 | 0.065* | |
H18B | 0.8623 | 0.3516 | 0.0287 | 0.065* | |
O1W | 1.2489 (5) | 0.6147 (4) | 0.10634 (13) | 0.0491 (7) | |
H1W | 1.143 (6) | 0.661 (6) | 0.1286 (19) | 0.074* | |
H2W | 1.293 (8) | 0.698 (5) | 0.086 (2) | 0.074* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0387 (5) | 0.0620 (7) | 0.0332 (5) | −0.0063 (4) | −0.0052 (4) | 0.0013 (4) |
O1 | 0.081 (2) | 0.077 (2) | 0.0334 (15) | −0.0501 (19) | 0.0214 (15) | −0.0252 (15) |
N1 | 0.0308 (16) | 0.0279 (15) | 0.0314 (15) | −0.0076 (12) | 0.0057 (12) | −0.0036 (12) |
N2 | 0.0380 (18) | 0.0384 (18) | 0.0380 (17) | −0.0016 (14) | 0.0155 (14) | −0.0037 (13) |
N3 | 0.049 (2) | 0.0433 (19) | 0.0375 (18) | −0.0135 (15) | 0.0174 (16) | −0.0073 (14) |
C1 | 0.0303 (18) | 0.0333 (19) | 0.0288 (17) | −0.0085 (14) | −0.0026 (14) | −0.0010 (14) |
C2 | 0.037 (2) | 0.039 (2) | 0.0283 (18) | −0.0112 (16) | 0.0055 (16) | −0.0051 (15) |
C3 | 0.0289 (18) | 0.039 (2) | 0.0310 (18) | −0.0040 (15) | 0.0073 (15) | −0.0030 (15) |
C4 | 0.0339 (19) | 0.0316 (19) | 0.0298 (18) | −0.0061 (14) | 0.0050 (15) | −0.0024 (14) |
C5 | 0.0308 (18) | 0.0259 (17) | 0.0283 (17) | −0.0074 (13) | 0.0036 (14) | −0.0025 (13) |
C6 | 0.0280 (18) | 0.0317 (19) | 0.0348 (19) | −0.0056 (14) | 0.0070 (15) | −0.0043 (14) |
C7 | 0.0345 (19) | 0.0354 (19) | 0.0290 (18) | −0.0120 (15) | 0.0024 (15) | −0.0039 (14) |
C8 | 0.048 (2) | 0.038 (2) | 0.0327 (19) | −0.0193 (17) | 0.0104 (17) | −0.0109 (16) |
C9 | 0.070 (3) | 0.051 (3) | 0.032 (2) | −0.032 (2) | 0.014 (2) | −0.0089 (18) |
Cl2 | 0.0633 (7) | 0.0630 (7) | 0.0319 (5) | −0.0187 (5) | −0.0054 (5) | 0.0050 (4) |
O2 | 0.093 (3) | 0.094 (3) | 0.085 (3) | −0.067 (2) | 0.063 (2) | −0.049 (2) |
N4 | 0.0293 (15) | 0.0294 (15) | 0.0333 (16) | −0.0048 (12) | 0.0040 (12) | −0.0042 (12) |
N5 | 0.0298 (17) | 0.050 (2) | 0.047 (2) | 0.0020 (14) | 0.0020 (15) | −0.0105 (15) |
N6 | 0.0359 (19) | 0.057 (2) | 0.053 (2) | −0.0086 (16) | 0.0100 (17) | −0.0177 (17) |
C10 | 0.043 (2) | 0.034 (2) | 0.0289 (18) | −0.0136 (16) | −0.0044 (16) | 0.0042 (14) |
C11 | 0.041 (2) | 0.036 (2) | 0.0318 (19) | −0.0101 (16) | 0.0087 (16) | −0.0011 (15) |
C12 | 0.034 (2) | 0.036 (2) | 0.045 (2) | −0.0018 (16) | 0.0087 (17) | −0.0016 (16) |
C13 | 0.0333 (19) | 0.0312 (19) | 0.0316 (18) | −0.0075 (14) | −0.0006 (15) | −0.0011 (14) |
C14 | 0.0329 (19) | 0.0259 (18) | 0.0355 (19) | −0.0087 (14) | 0.0080 (15) | −0.0039 (14) |
C15 | 0.0308 (19) | 0.0333 (19) | 0.0340 (19) | −0.0086 (14) | −0.0009 (15) | 0.0027 (14) |
C16 | 0.041 (2) | 0.034 (2) | 0.0316 (19) | −0.0113 (16) | 0.0063 (16) | −0.0002 (15) |
C17 | 0.044 (2) | 0.038 (2) | 0.042 (2) | −0.0190 (17) | 0.0149 (18) | −0.0105 (17) |
C18 | 0.061 (3) | 0.063 (3) | 0.046 (2) | −0.033 (2) | 0.026 (2) | −0.019 (2) |
O1W | 0.0453 (17) | 0.065 (2) | 0.0381 (16) | −0.0109 (14) | 0.0155 (13) | −0.0064 (14) |
Cl1—C1 | 1.739 (4) | O2—C18 | 1.423 (5) |
O1—C9 | 1.422 (5) | O2—H2O | 0.840 (10) |
O1—H1O | 0.839 (10) | N4—C16 | 1.350 (4) |
N1—C7 | 1.350 (4) | N4—N5 | 1.355 (4) |
N1—N2 | 1.356 (4) | N4—C14 | 1.431 (4) |
N1—C5 | 1.418 (4) | N5—N6 | 1.310 (5) |
N2—N3 | 1.307 (4) | N6—C17 | 1.353 (5) |
N3—C8 | 1.370 (5) | C10—C11 | 1.385 (5) |
C1—C2 | 1.380 (5) | C10—C15 | 1.385 (5) |
C1—C6 | 1.385 (5) | C11—C12 | 1.378 (5) |
C2—C3 | 1.384 (5) | C11—H11 | 0.9500 |
C2—H2 | 0.9500 | C12—C13 | 1.390 (5) |
C3—C4 | 1.382 (5) | C12—H12 | 0.9500 |
C3—H3 | 0.9500 | C13—C14 | 1.377 (5) |
C4—C5 | 1.385 (5) | C13—H13 | 0.9500 |
C4—H4 | 0.9500 | C14—C15 | 1.384 (5) |
C5—C6 | 1.390 (5) | C15—H15 | 0.9500 |
C6—H6 | 0.9500 | C16—C17 | 1.364 (5) |
C7—C8 | 1.363 (5) | C16—H16 | 0.9500 |
C7—H7 | 0.9500 | C17—C18 | 1.507 (5) |
C8—C9 | 1.485 (5) | C18—H18A | 0.9900 |
C9—H9A | 0.9900 | C18—H18B | 0.9900 |
C9—H9B | 0.9900 | O1W—H1W | 0.840 (10) |
Cl2—C10 | 1.731 (4) | O1W—H2W | 0.838 (10) |
C9—O1—H1O | 115 (4) | C16—N4—N5 | 110.3 (3) |
C7—N1—N2 | 110.3 (3) | C16—N4—C14 | 130.2 (3) |
C7—N1—C5 | 128.6 (3) | N5—N4—C14 | 119.5 (3) |
N2—N1—C5 | 121.1 (3) | N6—N5—N4 | 106.6 (3) |
N3—N2—N1 | 106.9 (3) | N5—N6—C17 | 109.9 (3) |
N2—N3—C8 | 109.7 (3) | C11—C10—C15 | 121.9 (3) |
C2—C1—C6 | 121.7 (3) | C11—C10—Cl2 | 119.7 (3) |
C2—C1—Cl1 | 119.3 (3) | C15—C10—Cl2 | 118.5 (3) |
C6—C1—Cl1 | 119.0 (3) | C12—C11—C10 | 118.3 (3) |
C1—C2—C3 | 118.8 (3) | C12—C11—H11 | 120.8 |
C1—C2—H2 | 120.6 | C10—C11—H11 | 120.8 |
C3—C2—H2 | 120.6 | C11—C12—C13 | 121.3 (4) |
C4—C3—C2 | 120.9 (3) | C11—C12—H12 | 119.4 |
C4—C3—H3 | 119.6 | C13—C12—H12 | 119.4 |
C2—C3—H3 | 119.6 | C14—C13—C12 | 118.9 (3) |
C3—C4—C5 | 119.5 (3) | C14—C13—H13 | 120.6 |
C3—C4—H4 | 120.3 | C12—C13—H13 | 120.6 |
C5—C4—H4 | 120.3 | C13—C14—C15 | 121.4 (3) |
C6—C5—C4 | 120.7 (3) | C13—C14—N4 | 119.7 (3) |
C6—C5—N1 | 119.0 (3) | C15—C14—N4 | 118.8 (3) |
C4—C5—N1 | 120.4 (3) | C14—C15—C10 | 118.2 (3) |
C5—C6—C1 | 118.5 (3) | C14—C15—H15 | 120.9 |
C5—C6—H6 | 120.7 | C10—C15—H15 | 120.9 |
C1—C6—H6 | 120.7 | N4—C16—C17 | 105.2 (3) |
N1—C7—C8 | 105.6 (3) | N4—C16—H16 | 127.4 |
N1—C7—H7 | 127.2 | C17—C16—H16 | 127.4 |
C8—C7—H7 | 127.2 | N6—C17—C16 | 108.0 (3) |
C7—C8—N3 | 107.5 (3) | N6—C17—C18 | 122.0 (4) |
C7—C8—C9 | 129.8 (4) | C16—C17—C18 | 129.9 (4) |
N3—C8—C9 | 122.7 (3) | O2—C18—C17 | 109.9 (4) |
O1—C9—C8 | 111.6 (3) | O2—C18—H18A | 109.7 |
O1—C9—H9A | 109.3 | C17—C18—H18A | 109.7 |
C8—C9—H9A | 109.3 | O2—C18—H18B | 109.7 |
O1—C9—H9B | 109.3 | C17—C18—H18B | 109.7 |
C8—C9—H9B | 109.3 | H18A—C18—H18B | 108.2 |
H9A—C9—H9B | 108.0 | H1W—O1W—H2W | 109 (4) |
C18—O2—H2O | 120 (5) | ||
C7—N1—N2—N3 | 0.5 (4) | C16—N4—N5—N6 | −0.2 (4) |
C5—N1—N2—N3 | −179.0 (3) | C14—N4—N5—N6 | 179.2 (3) |
N1—N2—N3—C8 | −0.3 (4) | N4—N5—N6—C17 | 0.3 (4) |
C6—C1—C2—C3 | 0.1 (5) | C15—C10—C11—C12 | −0.7 (5) |
Cl1—C1—C2—C3 | 179.0 (3) | Cl2—C10—C11—C12 | 178.7 (3) |
C1—C2—C3—C4 | 0.5 (5) | C10—C11—C12—C13 | 1.3 (5) |
C2—C3—C4—C5 | −0.7 (5) | C11—C12—C13—C14 | −1.1 (5) |
C3—C4—C5—C6 | 0.3 (5) | C12—C13—C14—C15 | 0.4 (5) |
C3—C4—C5—N1 | −178.9 (3) | C12—C13—C14—N4 | 179.9 (3) |
C7—N1—C5—C6 | −166.4 (3) | C16—N4—C14—C13 | 17.2 (5) |
N2—N1—C5—C6 | 12.9 (5) | N5—N4—C14—C13 | −162.1 (3) |
C7—N1—C5—C4 | 12.8 (5) | C16—N4—C14—C15 | −163.2 (3) |
N2—N1—C5—C4 | −167.9 (3) | N5—N4—C14—C15 | 17.4 (5) |
C4—C5—C6—C1 | 0.3 (5) | C13—C14—C15—C10 | 0.1 (5) |
N1—C5—C6—C1 | 179.5 (3) | N4—C14—C15—C10 | −179.4 (3) |
C2—C1—C6—C5 | −0.5 (5) | C11—C10—C15—C14 | 0.0 (5) |
Cl1—C1—C6—C5 | −179.4 (3) | Cl2—C10—C15—C14 | −179.4 (3) |
N2—N1—C7—C8 | −0.4 (4) | N5—N4—C16—C17 | 0.1 (4) |
C5—N1—C7—C8 | 179.0 (3) | C14—N4—C16—C17 | −179.3 (3) |
N1—C7—C8—N3 | 0.2 (4) | N5—N6—C17—C16 | −0.3 (4) |
N1—C7—C8—C9 | −179.4 (3) | N5—N6—C17—C18 | −179.8 (3) |
N2—N3—C8—C7 | 0.1 (4) | N4—C16—C17—N6 | 0.1 (4) |
N2—N3—C8—C9 | 179.7 (3) | N4—C16—C17—C18 | 179.6 (4) |
C7—C8—C9—O1 | −98.3 (5) | N6—C17—C18—O2 | −60.3 (5) |
N3—C8—C9—O1 | 82.2 (5) | C16—C17—C18—O2 | 120.2 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1o···O2i | 0.84 (4) | 1.82 (4) | 2.651 (5) | 170 (5) |
O2—H2o···O1w | 0.84 (6) | 1.80 (5) | 2.641 (5) | 174 (7) |
O1w—H1w···N3 | 0.84 (4) | 2.00 (4) | 2.837 (5) | 172 (4) |
O1w—H2w···O1ii | 0.84 (4) | 1.95 (5) | 2.663 (5) | 142 (4) |
C16—H16···O1wiii | 0.95 | 2.45 | 3.383 (5) | 166 |
C7—H7···N6iv | 0.95 | 2.28 | 3.197 (5) | 161 |
Symmetry codes: (i) −x+2, −y+1, −z; (ii) x+1, y, z; (iii) x−1, y, z; (iv) x−1, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C9H8ClN3O·0.5H2O |
Mr | 218.64 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 120 |
a, b, c (Å) | 6.0078 (4), 7.4897 (4), 22.3145 (15) |
α, β, γ (°) | 88.818 (4), 89.901 (2), 80.493 (4) |
V (Å3) | 990.07 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.36 |
Crystal size (mm) | 0.18 × 0.18 × 0.02 |
Data collection | |
Diffractometer | Bruker–Nonius APEX II CCD camera on κ-goniostat diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2007) |
Tmin, Tmax | 0.843, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10830, 3909, 2948 |
Rint | 0.038 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.064, 0.163, 1.00 |
No. of reflections | 3909 |
No. of parameters | 274 |
No. of restraints | 5 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.41, −0.34 |
Computer programs: , DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), QMol (Gans & Shalloway, 2001) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1o···O2i | 0.84 (4) | 1.82 (4) | 2.651 (5) | 170 (5) |
O2—H2o···O1w | 0.84 (6) | 1.80 (5) | 2.641 (5) | 174 (7) |
O1w—H1w···N3 | 0.84 (4) | 2.00 (4) | 2.837 (5) | 172 (4) |
O1w—H2w···O1ii | 0.84 (4) | 1.95 (5) | 2.663 (5) | 142 (4) |
C16—H16···O1wiii | 0.95 | 2.45 | 3.383 (5) | 166 |
C7—H7···N6iv | 0.95 | 2.28 | 3.197 (5) | 161 |
Symmetry codes: (i) −x+2, −y+1, −z; (ii) x+1, y, z; (iii) x−1, y, z; (iv) x−1, y+1, z. |
Footnotes
‡Additional correspondence author, e-mail: j.wardell@abdn.ac.uk.
Acknowledgements
The use of the EPSRC X-ray crystallographic service at the University of Southampton, England, and the valuable assistance of the staff there is gratefully acknowledged. JLW acknowledges support from CAPES and FAPEMIG (Brazil).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Boechat and colleagues have been interested in the synthesis, biological activities and structures of 1,2,3-triazole derivatives for some time (Boechat et al., 2010, 2011; Costa et al., 2006a, 2006b; Ferreira et al., 2007, Jordão et al., 2009). Recently, they reported the synthesis and anti-mycobacterial activities of a number of 4-R-1-(X-phenyl)-triazole derivatives (Boechat et al., 2011). The structure of one of the compounds investigated in that study, i.e. the title compound, (I), is now reported.
Two independent molecules of a 1,2,3-triazole derivative and a water molecule of solvation comprise the asymmetric unit of (I), Fig. 1. Geometrically, the two organic molecules are similar to each other with r.m.s. deviations for bond distances and angles being 0.0092 Å and 0.757°, respectively (Spek, 2009). From the overlay diagram, Fig. 2, it is evident that the independent molecules approximate mirror images. However, small twists between the five- and six-membered rings differ with the dihedral angles between their least-squares being 12.71 (19) and 17.3 (2)°, respectively, for the N1- and N4-containing molecules. More notable are the relative orientations of the terminal CH2OH groups as seen in the values of the N3—C8—C9—O1 and N6—C17—C18—O2 torsion angles of 82.2 (5) and -60.3 (5)°, respectively.
The presence of a supramolecular chain along the a axis is the most prominent feature of the crystal packing, Fig. 3. These are mediated by O—H···O and O—H···N hydrogen bonds with additional stability afforded by C—H···O interactions, Table 1. Chains are connected into layers via C—H···N interactions, Table 1, and these stack along the b axis. The closest interactions between layers are of the type Cl···Cl, i.e. Cl1···Cl2i = 3.4117 (15) Å for i: 2 - x, 1 - y, 1 - z.