organic compounds
4-[(2,4-Difluorophenyl)hydrazinylidene]-3-methyl-5-oxo-4,5-dihydro-1H-pyrazole-1-carbothioamide
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Studies in Chemistry, Mangalore University, Mangalagangotri, Mangalore 574 199, India
*Correspondence e-mail: hkfun@usm.my
In the title compound, C11H9F2N5OS, the pyrazole ring forms a dihedral angle of 16.42 (6)° with the benzene ring. Intramolecular N—H⋯O hydrogen bonds generate two S(6) ring motifs. In the crystal, an R22(8) ring motif is formed by a pair of intermolecular N—H⋯S hydrogen bonds. Intermolecular C—H⋯F hydrogen bonds further link the molecules into a three-dimensional network.
Related literature
For the biological activity of pyrazole derivatives, see: Isloor et al. (2009); Rai et al. (2008); Bradbury & Pucci (2008); Girisha et al. (2010). For a related structure, see: Fun et al. (2011). For hydrogen-bond motifs, see: Bernstein et al. (1995). For stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811044576/is2796sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811044576/is2796Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811044576/is2796Isup3.cml
To a solution of ethyl-2-[(2,4-difluorophenyl)hydrazono]-3-oxobutanoate (0.01 mol) dissolved in glacial acetic acid (15 ml), a solution of thiosemicarbazide (0.02 mol) in glacial acetic acid (15 ml) was added and the mixture was refluxed for 4 h. It is cooled and allowed to stand overnight. The solid product that separated out was filtered and dried. It was then recrystallized from ethanol. Crystals suitable for X-ray analysis were obtained from 1:2 mixture of DMF and ethanol by slow evaporation.
Atoms H1N1, H1N5 and H2N5 were located in a difference Fourier map and refined freely [N—H = 0.866 (17), 0.840 (18) and 0.878 (17) Å]. The remaining H atoms were positioned geometrically (C—H = 0.95 and 0.98 Å) and refined riding on their carrier atoms. The Uiso(H) values were constrained to be 1.5Ueq of the carrier atoms for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl group.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The structure of the title compound, showing 50% probability displacement ellipsoids. Hydrogen atoms are shown as spheres of arbitrary radius. | |
Fig. 2. The crystal packing, viewed along the b-axis, showing the molecules formed a into three-dimensional network. Hydrogen atoms that not involved in hydrogen bonding (dashed lines) are omitted for clarity. |
C11H9F2N5OS | Z = 2 |
Mr = 297.29 | F(000) = 304 |
Triclinic, P1 | Dx = 1.597 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.9003 (1) Å | Cell parameters from 7383 reflections |
b = 8.2400 (1) Å | θ = 2.6–31.9° |
c = 10.1378 (1) Å | µ = 0.29 mm−1 |
α = 103.409 (1)° | T = 100 K |
β = 99.864 (1)° | Block, green |
γ = 99.372 (1)° | 0.41 × 0.23 × 0.08 mm |
V = 618.18 (1) Å3 |
Bruker SMART APEXII CCD area-detector diffractometer | 4211 independent reflections |
Radiation source: fine-focus sealed tube | 3546 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ϕ and ω scans | θmax = 31.9°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −11→11 |
Tmin = 0.890, Tmax = 0.977 | k = −12→12 |
15661 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.091 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0469P)2 + 0.1483P] where P = (Fo2 + 2Fc2)/3 |
4211 reflections | (Δ/σ)max = 0.001 |
194 parameters | Δρmax = 0.46 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
C11H9F2N5OS | γ = 99.372 (1)° |
Mr = 297.29 | V = 618.18 (1) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.9003 (1) Å | Mo Kα radiation |
b = 8.2400 (1) Å | µ = 0.29 mm−1 |
c = 10.1378 (1) Å | T = 100 K |
α = 103.409 (1)° | 0.41 × 0.23 × 0.08 mm |
β = 99.864 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 4211 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3546 reflections with I > 2σ(I) |
Tmin = 0.890, Tmax = 0.977 | Rint = 0.024 |
15661 measured reflections |
R[F2 > 2σ(F2)] = 0.033 | 0 restraints |
wR(F2) = 0.091 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.46 e Å−3 |
4211 reflections | Δρmin = −0.27 e Å−3 |
194 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.21061 (4) | 0.24608 (3) | 0.56219 (3) | 0.01893 (8) | |
F1 | −0.53111 (10) | 0.91062 (10) | −0.26133 (8) | 0.02844 (17) | |
F2 | −0.43017 (9) | 0.41257 (8) | −0.13817 (7) | 0.02208 (15) | |
O1 | −0.14398 (10) | 0.30354 (10) | 0.16468 (8) | 0.01952 (16) | |
N1 | −0.15277 (12) | 0.58736 (12) | 0.06501 (10) | 0.01746 (17) | |
N2 | −0.00803 (12) | 0.66676 (12) | 0.15852 (9) | 0.01665 (17) | |
N3 | 0.08671 (12) | 0.38926 (11) | 0.36455 (9) | 0.01611 (17) | |
N4 | 0.22017 (12) | 0.53670 (11) | 0.43282 (10) | 0.01660 (17) | |
N5 | −0.06153 (13) | 0.11880 (12) | 0.34770 (11) | 0.02077 (19) | |
C1 | −0.19357 (15) | 0.85108 (14) | 0.00178 (12) | 0.0202 (2) | |
H1A | −0.0949 | 0.9165 | 0.0722 | 0.024* | |
C2 | −0.29073 (16) | 0.93080 (15) | −0.08133 (13) | 0.0229 (2) | |
H2A | −0.2603 | 1.0507 | −0.0681 | 0.027* | |
C3 | −0.43254 (15) | 0.83195 (15) | −0.18365 (12) | 0.0208 (2) | |
C4 | −0.48169 (14) | 0.65643 (14) | −0.21030 (12) | 0.0190 (2) | |
H4A | −0.5768 | 0.5907 | −0.2839 | 0.023* | |
C5 | −0.38454 (14) | 0.58275 (13) | −0.12371 (11) | 0.01665 (19) | |
C6 | −0.24060 (14) | 0.67551 (13) | −0.01797 (11) | 0.01630 (19) | |
C7 | −0.01793 (13) | 0.40835 (13) | 0.24639 (11) | 0.01574 (19) | |
C8 | 0.05592 (13) | 0.58088 (13) | 0.24210 (11) | 0.01541 (18) | |
C9 | 0.20256 (14) | 0.64684 (13) | 0.36007 (11) | 0.01583 (19) | |
C10 | 0.32130 (15) | 0.81794 (13) | 0.39924 (12) | 0.0200 (2) | |
H10A | 0.4110 | 0.8292 | 0.4825 | 0.030* | |
H10B | 0.2529 | 0.9064 | 0.4184 | 0.030* | |
H10C | 0.3783 | 0.8311 | 0.3227 | 0.030* | |
C11 | 0.07145 (14) | 0.24765 (13) | 0.41963 (11) | 0.01608 (19) | |
H1N1 | −0.198 (2) | 0.482 (2) | 0.0569 (18) | 0.036 (5)* | |
H1N5 | −0.078 (2) | 0.032 (2) | 0.3780 (19) | 0.036 (4)* | |
H2N5 | −0.138 (2) | 0.126 (2) | 0.2763 (18) | 0.030 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.01932 (13) | 0.01622 (12) | 0.01939 (14) | 0.00185 (9) | −0.00104 (10) | 0.00627 (10) |
F1 | 0.0254 (4) | 0.0287 (4) | 0.0295 (4) | 0.0030 (3) | −0.0064 (3) | 0.0154 (3) |
F2 | 0.0226 (3) | 0.0156 (3) | 0.0241 (3) | −0.0004 (2) | 0.0008 (3) | 0.0039 (3) |
O1 | 0.0175 (4) | 0.0184 (4) | 0.0183 (4) | −0.0008 (3) | −0.0013 (3) | 0.0032 (3) |
N1 | 0.0172 (4) | 0.0165 (4) | 0.0164 (4) | 0.0018 (3) | −0.0009 (3) | 0.0044 (3) |
N2 | 0.0170 (4) | 0.0175 (4) | 0.0143 (4) | 0.0034 (3) | 0.0018 (3) | 0.0032 (3) |
N3 | 0.0164 (4) | 0.0135 (4) | 0.0161 (4) | 0.0005 (3) | −0.0002 (3) | 0.0041 (3) |
N4 | 0.0164 (4) | 0.0134 (4) | 0.0170 (4) | 0.0000 (3) | 0.0003 (3) | 0.0027 (3) |
N5 | 0.0211 (5) | 0.0163 (4) | 0.0216 (5) | −0.0015 (3) | −0.0015 (4) | 0.0068 (4) |
C1 | 0.0194 (5) | 0.0186 (5) | 0.0185 (5) | 0.0011 (4) | −0.0028 (4) | 0.0038 (4) |
C2 | 0.0238 (5) | 0.0183 (5) | 0.0236 (6) | 0.0020 (4) | −0.0022 (4) | 0.0067 (4) |
C3 | 0.0195 (5) | 0.0231 (5) | 0.0193 (5) | 0.0038 (4) | −0.0010 (4) | 0.0089 (4) |
C4 | 0.0159 (5) | 0.0220 (5) | 0.0164 (5) | 0.0005 (4) | 0.0002 (4) | 0.0046 (4) |
C5 | 0.0166 (5) | 0.0160 (4) | 0.0157 (5) | 0.0009 (4) | 0.0030 (4) | 0.0031 (4) |
C6 | 0.0165 (4) | 0.0176 (4) | 0.0146 (4) | 0.0036 (4) | 0.0023 (4) | 0.0046 (4) |
C7 | 0.0152 (4) | 0.0163 (4) | 0.0147 (4) | 0.0028 (3) | 0.0022 (4) | 0.0033 (4) |
C8 | 0.0156 (4) | 0.0146 (4) | 0.0146 (4) | 0.0018 (3) | 0.0018 (4) | 0.0030 (4) |
C9 | 0.0164 (4) | 0.0146 (4) | 0.0152 (4) | 0.0025 (3) | 0.0022 (4) | 0.0030 (4) |
C10 | 0.0219 (5) | 0.0148 (4) | 0.0197 (5) | −0.0006 (4) | 0.0005 (4) | 0.0037 (4) |
C11 | 0.0164 (4) | 0.0143 (4) | 0.0170 (5) | 0.0030 (3) | 0.0029 (4) | 0.0041 (4) |
S1—C11 | 1.6633 (11) | C1—C2 | 1.3893 (15) |
F1—C3 | 1.3557 (12) | C1—C6 | 1.3914 (15) |
F2—C5 | 1.3564 (12) | C1—H1A | 0.9500 |
O1—C7 | 1.2366 (13) | C2—C3 | 1.3810 (16) |
N1—N2 | 1.3159 (13) | C2—H2A | 0.9500 |
N1—C6 | 1.4016 (13) | C3—C4 | 1.3840 (16) |
N1—H1N1 | 0.866 (17) | C4—C5 | 1.3772 (15) |
N2—C8 | 1.3122 (13) | C4—H4A | 0.9500 |
N3—C7 | 1.3905 (13) | C5—C6 | 1.3949 (15) |
N3—C11 | 1.4026 (13) | C7—C8 | 1.4597 (14) |
N3—N4 | 1.4176 (12) | C8—C9 | 1.4445 (14) |
N4—C9 | 1.3051 (13) | C9—C10 | 1.4858 (14) |
N5—C11 | 1.3334 (14) | C10—H10A | 0.9800 |
N5—H1N5 | 0.840 (18) | C10—H10B | 0.9800 |
N5—H2N5 | 0.878 (17) | C10—H10C | 0.9800 |
N2—N1—C6 | 120.34 (9) | F2—C5—C6 | 117.21 (9) |
N2—N1—H1N1 | 120.6 (12) | C4—C5—C6 | 123.13 (10) |
C6—N1—H1N1 | 119.0 (12) | C1—C6—C5 | 118.51 (10) |
C8—N2—N1 | 116.66 (9) | C1—C6—N1 | 123.27 (10) |
C7—N3—C11 | 127.86 (9) | C5—C6—N1 | 118.20 (9) |
C7—N3—N4 | 112.25 (8) | O1—C7—N3 | 127.95 (10) |
C11—N3—N4 | 119.89 (9) | O1—C7—C8 | 128.37 (10) |
C9—N4—N3 | 106.61 (8) | N3—C7—C8 | 103.68 (9) |
C11—N5—H1N5 | 117.8 (12) | N2—C8—C9 | 126.25 (9) |
C11—N5—H2N5 | 122.4 (11) | N2—C8—C7 | 127.47 (10) |
H1N5—N5—H2N5 | 119.5 (16) | C9—C8—C7 | 105.88 (9) |
C2—C1—C6 | 120.11 (10) | N4—C9—C8 | 111.56 (9) |
C2—C1—H1A | 119.9 | N4—C9—C10 | 122.26 (10) |
C6—C1—H1A | 119.9 | C8—C9—C10 | 126.18 (9) |
C3—C2—C1 | 118.57 (10) | C9—C10—H10A | 109.5 |
C3—C2—H2A | 120.7 | C9—C10—H10B | 109.5 |
C1—C2—H2A | 120.7 | H10A—C10—H10B | 109.5 |
F1—C3—C2 | 118.52 (10) | C9—C10—H10C | 109.5 |
F1—C3—C4 | 117.86 (10) | H10A—C10—H10C | 109.5 |
C2—C3—C4 | 123.62 (10) | H10B—C10—H10C | 109.5 |
C5—C4—C3 | 116.00 (10) | N5—C11—N3 | 114.10 (9) |
C5—C4—H4A | 122.0 | N5—C11—S1 | 124.50 (8) |
C3—C4—H4A | 122.0 | N3—C11—S1 | 121.40 (8) |
F2—C5—C4 | 119.65 (10) | ||
C6—N1—N2—C8 | 172.87 (9) | N4—N3—C7—O1 | 179.75 (10) |
C7—N3—N4—C9 | −0.44 (12) | C11—N3—C7—C8 | 178.66 (10) |
C11—N3—N4—C9 | −179.57 (9) | N4—N3—C7—C8 | −0.38 (11) |
C6—C1—C2—C3 | −0.58 (18) | N1—N2—C8—C9 | −173.72 (10) |
C1—C2—C3—F1 | 177.63 (10) | N1—N2—C8—C7 | −2.03 (16) |
C1—C2—C3—C4 | −1.39 (19) | O1—C7—C8—N2 | 7.81 (18) |
F1—C3—C4—C5 | −176.26 (10) | N3—C7—C8—N2 | −172.05 (10) |
C2—C3—C4—C5 | 2.77 (17) | O1—C7—C8—C9 | −179.15 (10) |
C3—C4—C5—F2 | 176.48 (10) | N3—C7—C8—C9 | 0.98 (11) |
C3—C4—C5—C6 | −2.30 (16) | N3—N4—C9—C8 | 1.11 (12) |
C2—C1—C6—C5 | 1.00 (17) | N3—N4—C9—C10 | −179.47 (9) |
C2—C1—C6—N1 | −177.62 (10) | N2—C8—C9—N4 | 171.79 (10) |
F2—C5—C6—C1 | −178.30 (10) | C7—C8—C9—N4 | −1.35 (12) |
C4—C5—C6—C1 | 0.50 (16) | N2—C8—C9—C10 | −7.61 (17) |
F2—C5—C6—N1 | 0.39 (14) | C7—C8—C9—C10 | 179.24 (10) |
C4—C5—C6—N1 | 179.20 (10) | C7—N3—C11—N5 | −0.44 (16) |
N2—N1—C6—C1 | −6.89 (16) | N4—N3—C11—N5 | 178.53 (9) |
N2—N1—C6—C5 | 174.49 (9) | C7—N3—C11—S1 | 179.35 (8) |
C11—N3—C7—O1 | −1.21 (18) | N4—N3—C11—S1 | −1.67 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···O1 | 0.863 (17) | 2.080 (17) | 2.7605 (13) | 135.2 (15) |
N5—H1N5···S1i | 0.842 (17) | 2.607 (17) | 3.4279 (11) | 165.5 (15) |
N5—H2N5···O1 | 0.880 (17) | 2.048 (17) | 2.7208 (13) | 132.5 (14) |
C10—H10A···F1ii | 0.98 | 2.47 | 3.3016 (14) | 143 |
C10—H10C···F1iii | 0.98 | 2.53 | 3.2775 (14) | 133 |
C10—H10C···F2iv | 0.98 | 2.55 | 3.2145 (14) | 125 |
Symmetry codes: (i) −x, −y, −z+1; (ii) x+1, y, z+1; (iii) −x, −y+2, −z; (iv) −x, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C11H9F2N5OS |
Mr | 297.29 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 7.9003 (1), 8.2400 (1), 10.1378 (1) |
α, β, γ (°) | 103.409 (1), 99.864 (1), 99.372 (1) |
V (Å3) | 618.18 (1) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.29 |
Crystal size (mm) | 0.41 × 0.23 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.890, 0.977 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15661, 4211, 3546 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.743 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.091, 1.06 |
No. of reflections | 4211 |
No. of parameters | 194 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.46, −0.27 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···O1 | 0.863 (17) | 2.080 (17) | 2.7605 (13) | 135.2 (15) |
N5—H1N5···S1i | 0.842 (17) | 2.607 (17) | 3.4279 (11) | 165.5 (15) |
N5—H2N5···O1 | 0.880 (17) | 2.048 (17) | 2.7208 (13) | 132.5 (14) |
C10—H10A···F1ii | 0.9800 | 2.4700 | 3.3016 (14) | 143.00 |
C10—H10C···F1iii | 0.9800 | 2.5300 | 3.2775 (14) | 133.00 |
C10—H10C···F2iv | 0.9800 | 2.5500 | 3.2145 (14) | 125.00 |
Symmetry codes: (i) −x, −y, −z+1; (ii) x+1, y, z+1; (iii) −x, −y+2, −z; (iv) −x, −y+1, −z. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
HKF, IAR and SIJA thank the Malaysian Government and Universiti Sains Malaysia for the Research University Grants (Nos.1001/PFIZIK/811160 and 1001/PFIZIK/ 811151).
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The pyrazole ring is a prominent structural moiety found in numerous pharmaceutically active compounds. This is mainly due to the easy preparation and the important pharmacological activity. Therefore, the synthesis and selective functionalization of pyrazoles have been focus of active research area over the years (Isloor et al., 2009). Pyrazoles have been reported to possess antibacterial activity (Rai et al., 2008), and found to posses inhibitor activity against DNA gyrase and topoisomerase IV at their respective ATP-binding sites (Bradbury & Pucci, 2008). Moreover, pyrazole-containing compounds have received considerable attention owing to their diverse chemotherapeutic potentials including versatile anti-inflammatory and antimicrobial activities (Girisha et al., 2010). The synthetic route followed for obtaining the title compound (I) involves the diazotization of substituted anilines to give the diazonium salts followed by coupling with ethyl acetoacetate in the presence of sodium acetate to give the corresponding oxobutanoate which on further reaction with thiosemicarbazide in acetic acid gave the required thioamides.
In the title compound of (I), (Fig. 1), the pyrazole (N3/N4/C7–C9) ring is essentially planar, with a maximum deviation of 0.007 (1) Å for atom C9 and makes a dihedral angle of 16.42 (6)° with the benzene (C1–C6) ring. The intramolecular N1—H1N1···O1 and N5—H2N5···O1 hydrogen bonds generate two S(6) ring motifs (Bernstein et al., 1995). The geometric parameters are consistent to those observed in a closely related structure (Fun et al., 2011).
In the crystal structure, (Fig. 2), an R22(8) ring motif is formed by intermolecular N5—H1N5···S1 hydrogen bonds (Table 1). Intermolecular C10—H10A···F1, C10—H10C···F1 and C10—H10C···F2 (Table 1) hydrogen bonds further link the molecules into a three- dimensional network.