organic compounds
Propargylaminyl 3α-hydroxy-11-oxo-18β-olean-12-en-29-oate
aInstitute of Applied Synthetic Chemistry, Vienna University of Technology, Getreidemarkt 9/163, A-1060 Vienna, Austria, and bInstitute of Chemical Technologies and Analytics, Vienna University of Technology, Getreidemarkt 9/164SC, A-1060 Vienna, Austria
*Correspondence e-mail: kurt.mereiter@tuwien.ac.at
The title compound, C33H49NO3, is the propargylamide of 18β-glycyrrhetinic acid, a pentacyclic triterpenoid of interest as a therapeutic agent. The five six-membered rings of the glycyrrhetinic acid moiety show normal geometries, with four rings in chair conformations and the unsaturated ring C in a half-chair conformation. In the crystal, the terminal N-propargylcarboxamide group has remarkable structural effects on weak hydrogen-bond-like interactions. Particularly noteworthy are an intermolecular O—H⋯π interaction accepted side-on by the terminal alkyne group [O⋯C = 3.097 (2) and 3.356 (2) Å] and a short intermolecular C—H⋯O interaction [C⋯O = 3.115 (2) Å] donated by the alkyne C—H group. An N—H⋯O [N⋯O = 3.251 (2) Å] and a Calkyl—H⋯O [C⋯O = 3.254 (2) Å] interaction complement the crystal structure.
Related literature
For general information on the therapeutic aspects of the parent compounds glycyrrhizin and 18β-glycyrrhetinic acid, see: Baran et al. (1974); Kitagawa (2002); Asl & Hosseinzadeh (2008). For the synthesis of derivatives of 18β-glycyrrhetinic acid with a therapeutic background, see: Su et al. (2004); Beseda et al. (2010). For the crystal structures of 18β-glycyrrhetinic acid and derivatives, see: Campsteyn et al. (1977); Alvarez-Larena et al. (2007); Beseda et al. (2010); Amer et al. (2010). For the data of several N-propargylcarboxamides, see: Hashmi et al. (2004); Frey et al. (2008). For weak hydrogen bonds involving C≡C—H moieties, see: Desiraju & Steiner (1999).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT, SADABS and XPREP (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: PLATON (Spek, 2009) and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536811043534/jj2102sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811043534/jj2102Isup2.hkl
The synthesis and properties of the title compound were described by Beseda et al. (2010). Platy colourless crystals for X-ray diffraction were obtained from CH2Cl2 by diethyl ether vapour diffusion at ambient temperature.
The two N– and O–bonded hydrogen atoms were located by a Fourier map and were the refined in x, y, z, and Uiso. All C-bonded H atoms were placed in calculated positions and thereafter treated as riding with CH = 1.00 Å, CH2 = 0.99 Å and CH3 = 0.98 Å. A torsional parameter was refined for each methyl group. Uiso(H) = 1.2Ueq(Cnon-methyl) and Uiso(H) = 1.5Ueq(Cmethyl) were used. Because of insignificant β-glycyrrhetinic acid is known.
effects, the 3501 Friedel pairs were merged prior to the final The of the parent compound 18Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT, SADABS and XPREP (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: PLATON (Spek, 2009) and publCIF (Westrip, 2010).C33H49NO3 | F(000) = 1112 |
Mr = 507.73 | Dx = 1.189 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 9975 reflections |
a = 6.7534 (8) Å | θ = 2.5–31.0° |
b = 13.4879 (16) Å | µ = 0.07 mm−1 |
c = 31.132 (4) Å | T = 100 K |
V = 2835.8 (6) Å3 | Block, colourless |
Z = 4 | 0.56 × 0.43 × 0.38 mm |
Bruker Kappa APEXII CCD diffractometer | 4658 independent reflections |
Radiation source: fine-focus sealed tube | 4531 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
φ and ω scans | θmax = 30.0°, θmin = 3.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −9→9 |
Tmin = 0.87, Tmax = 0.97 | k = −18→18 |
41876 measured reflections | l = −43→43 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.089 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0593P)2 + 0.405P] where P = (Fo2 + 2Fc2)/3 |
4658 reflections | (Δ/σ)max < 0.001 |
349 parameters | Δρmax = 0.36 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C33H49NO3 | V = 2835.8 (6) Å3 |
Mr = 507.73 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 6.7534 (8) Å | µ = 0.07 mm−1 |
b = 13.4879 (16) Å | T = 100 K |
c = 31.132 (4) Å | 0.56 × 0.43 × 0.38 mm |
Bruker Kappa APEXII CCD diffractometer | 4658 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 4531 reflections with I > 2σ(I) |
Tmin = 0.87, Tmax = 0.97 | Rint = 0.026 |
41876 measured reflections |
R[F2 > 2σ(F2)] = 0.033 | 0 restraints |
wR(F2) = 0.089 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | Δρmax = 0.36 e Å−3 |
4658 reflections | Δρmin = −0.21 e Å−3 |
349 parameters |
Geometry. All e.s.d.'s are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.33309 (16) | 0.31149 (7) | −0.07972 (3) | 0.02015 (19) | |
H1O | 0.442 (4) | 0.2913 (16) | −0.0864 (7) | 0.037 (6)* | |
O2 | 0.69829 (15) | 0.41262 (7) | 0.11669 (3) | 0.02086 (19) | |
O3 | 0.54563 (16) | 0.58041 (7) | 0.29778 (3) | 0.0230 (2) | |
N1 | 0.44107 (17) | 0.70328 (9) | 0.34128 (3) | 0.0200 (2) | |
H1N | 0.359 (4) | 0.7444 (15) | 0.3467 (6) | 0.036 (5)* | |
C1 | 0.48914 (18) | 0.36216 (8) | 0.03539 (3) | 0.0145 (2) | |
H1A | 0.5902 | 0.3298 | 0.0537 | 0.017* | |
H1B | 0.3582 | 0.3510 | 0.0489 | 0.017* | |
C2 | 0.49087 (19) | 0.31341 (8) | −0.00911 (4) | 0.0151 (2) | |
H2A | 0.6258 | 0.3179 | −0.0214 | 0.018* | |
H2B | 0.4570 | 0.2423 | −0.0062 | 0.018* | |
C3 | 0.34512 (18) | 0.36236 (8) | −0.03949 (4) | 0.0145 (2) | |
H3 | 0.2116 | 0.3569 | −0.0258 | 0.017* | |
C4 | 0.38603 (19) | 0.47405 (8) | −0.04565 (4) | 0.0146 (2) | |
C5 | 0.38760 (18) | 0.52135 (8) | 0.00015 (3) | 0.0134 (2) | |
H5 | 0.2524 | 0.5076 | 0.0118 | 0.016* | |
C6 | 0.4025 (2) | 0.63474 (9) | −0.00030 (4) | 0.0185 (2) | |
H6A | 0.5416 | 0.6548 | −0.0053 | 0.022* | |
H6B | 0.3206 | 0.6617 | −0.0239 | 0.022* | |
C7 | 0.3310 (2) | 0.67657 (9) | 0.04257 (4) | 0.0189 (2) | |
H7A | 0.1891 | 0.6601 | 0.0463 | 0.023* | |
H7B | 0.3428 | 0.7497 | 0.0419 | 0.023* | |
C8 | 0.44738 (18) | 0.63652 (8) | 0.08139 (3) | 0.0136 (2) | |
C9 | 0.47071 (17) | 0.52100 (8) | 0.07863 (3) | 0.01207 (19) | |
H9 | 0.3343 | 0.4950 | 0.0840 | 0.014* | |
C10 | 0.53109 (17) | 0.47525 (8) | 0.03395 (3) | 0.01207 (19) | |
C11 | 0.59034 (18) | 0.48589 (8) | 0.11744 (3) | 0.0141 (2) | |
C12 | 0.57055 (18) | 0.54248 (8) | 0.15768 (4) | 0.0150 (2) | |
H12 | 0.6418 | 0.5195 | 0.1820 | 0.018* | |
C13 | 0.45862 (17) | 0.62445 (8) | 0.16244 (3) | 0.0131 (2) | |
C14 | 0.33519 (18) | 0.66155 (8) | 0.12473 (4) | 0.0138 (2) | |
C15 | 0.2914 (2) | 0.77451 (9) | 0.12719 (4) | 0.0201 (2) | |
H15A | 0.4054 | 0.8110 | 0.1150 | 0.024* | |
H15B | 0.1743 | 0.7892 | 0.1091 | 0.024* | |
C16 | 0.2526 (2) | 0.81288 (9) | 0.17273 (4) | 0.0206 (2) | |
H16A | 0.1269 | 0.7843 | 0.1834 | 0.025* | |
H16B | 0.2370 | 0.8858 | 0.1718 | 0.025* | |
C17 | 0.4198 (2) | 0.78659 (9) | 0.20414 (4) | 0.0167 (2) | |
C18 | 0.44227 (18) | 0.67238 (8) | 0.20660 (3) | 0.0139 (2) | |
H18 | 0.5696 | 0.6588 | 0.2219 | 0.017* | |
C19 | 0.27685 (19) | 0.62085 (9) | 0.23255 (4) | 0.0164 (2) | |
H19A | 0.1517 | 0.6249 | 0.2161 | 0.020* | |
H19B | 0.3107 | 0.5498 | 0.2357 | 0.020* | |
C20 | 0.24291 (18) | 0.66535 (9) | 0.27734 (4) | 0.0163 (2) | |
C21 | 0.2018 (2) | 0.77698 (10) | 0.27197 (4) | 0.0203 (2) | |
H21A | 0.0784 | 0.7862 | 0.2553 | 0.024* | |
H21B | 0.1822 | 0.8074 | 0.3006 | 0.024* | |
C22 | 0.3723 (2) | 0.82909 (9) | 0.24901 (4) | 0.0198 (2) | |
H22A | 0.4924 | 0.8242 | 0.2671 | 0.024* | |
H22B | 0.3393 | 0.9003 | 0.2460 | 0.024* | |
C23 | 0.2125 (2) | 0.51640 (10) | −0.07188 (4) | 0.0226 (3) | |
H23A | 0.1912 | 0.4754 | −0.0974 | 0.034* | |
H23B | 0.2435 | 0.5844 | −0.0807 | 0.034* | |
H23C | 0.0923 | 0.5164 | −0.0542 | 0.034* | |
C24 | 0.5763 (2) | 0.49108 (10) | −0.07175 (4) | 0.0205 (2) | |
H24A | 0.5542 | 0.4710 | −0.1016 | 0.031* | |
H24B | 0.6841 | 0.4516 | −0.0595 | 0.031* | |
H24C | 0.6117 | 0.5615 | −0.0708 | 0.031* | |
C25 | 0.75367 (19) | 0.49072 (9) | 0.02375 (4) | 0.0169 (2) | |
H25A | 0.8296 | 0.4909 | 0.0506 | 0.025* | |
H25B | 0.7716 | 0.5542 | 0.0090 | 0.025* | |
H25C | 0.8005 | 0.4368 | 0.0053 | 0.025* | |
C26 | 0.6530 (2) | 0.68636 (9) | 0.08061 (4) | 0.0188 (2) | |
H26A | 0.7187 | 0.6717 | 0.0533 | 0.028* | |
H26B | 0.7334 | 0.6608 | 0.1044 | 0.028* | |
H26C | 0.6375 | 0.7582 | 0.0837 | 0.028* | |
C27 | 0.13253 (18) | 0.60715 (10) | 0.12792 (4) | 0.0190 (2) | |
H27A | 0.0469 | 0.6422 | 0.1483 | 0.028* | |
H27B | 0.1538 | 0.5391 | 0.1379 | 0.028* | |
H27C | 0.0693 | 0.6060 | 0.0996 | 0.028* | |
C28 | 0.6161 (2) | 0.83234 (10) | 0.18927 (4) | 0.0232 (3) | |
H28A | 0.6539 | 0.8038 | 0.1615 | 0.035* | |
H28B | 0.7194 | 0.8182 | 0.2105 | 0.035* | |
H28C | 0.6005 | 0.9042 | 0.1863 | 0.035* | |
C29 | 0.42524 (18) | 0.64604 (9) | 0.30565 (4) | 0.0158 (2) | |
C30 | 0.0673 (2) | 0.61229 (11) | 0.29881 (4) | 0.0229 (3) | |
H30A | −0.0528 | 0.6233 | 0.2818 | 0.034* | |
H30B | 0.0480 | 0.6388 | 0.3278 | 0.034* | |
H30C | 0.0948 | 0.5411 | 0.3005 | 0.034* | |
C31 | 0.5958 (2) | 0.68737 (9) | 0.37267 (4) | 0.0198 (2) | |
H31A | 0.6567 | 0.6216 | 0.3676 | 0.024* | |
H31B | 0.5365 | 0.6868 | 0.4017 | 0.024* | |
C32 | 0.7511 (2) | 0.76365 (9) | 0.37105 (4) | 0.0189 (2) | |
C33 | 0.8791 (2) | 0.82502 (10) | 0.37026 (4) | 0.0225 (2) | |
H33 | 0.9807 | 0.8737 | 0.3696 | 0.027* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0240 (5) | 0.0186 (4) | 0.0179 (4) | 0.0004 (4) | −0.0040 (3) | −0.0042 (3) |
O2 | 0.0255 (5) | 0.0196 (4) | 0.0175 (4) | 0.0108 (4) | −0.0036 (4) | −0.0009 (3) |
O3 | 0.0276 (5) | 0.0207 (4) | 0.0207 (4) | 0.0077 (4) | −0.0027 (4) | −0.0045 (3) |
N1 | 0.0178 (5) | 0.0238 (5) | 0.0186 (4) | 0.0035 (4) | −0.0015 (4) | −0.0069 (4) |
C1 | 0.0187 (5) | 0.0115 (4) | 0.0132 (4) | 0.0004 (4) | 0.0004 (4) | 0.0013 (4) |
C2 | 0.0184 (5) | 0.0123 (4) | 0.0147 (5) | 0.0009 (4) | −0.0007 (4) | 0.0011 (4) |
C3 | 0.0163 (5) | 0.0132 (4) | 0.0139 (4) | −0.0009 (4) | −0.0012 (4) | −0.0006 (4) |
C4 | 0.0186 (5) | 0.0127 (4) | 0.0125 (4) | −0.0004 (4) | −0.0012 (4) | 0.0009 (4) |
C5 | 0.0166 (5) | 0.0116 (4) | 0.0120 (4) | 0.0009 (4) | −0.0014 (4) | 0.0013 (4) |
C6 | 0.0302 (6) | 0.0117 (4) | 0.0137 (4) | 0.0015 (5) | −0.0027 (5) | 0.0021 (4) |
C7 | 0.0284 (6) | 0.0135 (5) | 0.0148 (5) | 0.0057 (5) | −0.0044 (5) | 0.0005 (4) |
C8 | 0.0173 (5) | 0.0105 (4) | 0.0131 (4) | 0.0012 (4) | −0.0013 (4) | 0.0010 (4) |
C9 | 0.0130 (4) | 0.0118 (4) | 0.0114 (4) | 0.0018 (4) | −0.0004 (4) | 0.0004 (4) |
C10 | 0.0122 (4) | 0.0118 (4) | 0.0122 (4) | 0.0009 (4) | 0.0001 (4) | 0.0008 (4) |
C11 | 0.0158 (5) | 0.0135 (4) | 0.0132 (4) | 0.0015 (4) | −0.0008 (4) | 0.0009 (4) |
C12 | 0.0170 (5) | 0.0155 (5) | 0.0126 (4) | 0.0037 (4) | −0.0016 (4) | 0.0005 (4) |
C13 | 0.0130 (5) | 0.0128 (4) | 0.0133 (4) | −0.0001 (4) | −0.0003 (4) | 0.0005 (4) |
C14 | 0.0148 (5) | 0.0125 (4) | 0.0142 (4) | 0.0024 (4) | −0.0018 (4) | −0.0007 (4) |
C15 | 0.0289 (6) | 0.0142 (5) | 0.0172 (5) | 0.0071 (5) | −0.0030 (5) | −0.0007 (4) |
C16 | 0.0280 (6) | 0.0150 (5) | 0.0188 (5) | 0.0068 (5) | −0.0025 (5) | −0.0022 (4) |
C17 | 0.0207 (5) | 0.0133 (5) | 0.0162 (5) | 0.0005 (4) | −0.0008 (4) | −0.0023 (4) |
C18 | 0.0154 (5) | 0.0126 (4) | 0.0135 (4) | 0.0004 (4) | −0.0005 (4) | −0.0013 (4) |
C19 | 0.0169 (5) | 0.0178 (5) | 0.0147 (4) | −0.0019 (4) | 0.0013 (4) | −0.0036 (4) |
C20 | 0.0148 (5) | 0.0189 (5) | 0.0153 (4) | −0.0005 (4) | 0.0012 (4) | −0.0038 (4) |
C21 | 0.0213 (6) | 0.0209 (6) | 0.0186 (5) | 0.0059 (5) | 0.0008 (5) | −0.0053 (4) |
C22 | 0.0273 (6) | 0.0148 (5) | 0.0174 (5) | 0.0007 (5) | −0.0004 (5) | −0.0036 (4) |
C23 | 0.0303 (7) | 0.0190 (5) | 0.0183 (5) | 0.0053 (5) | −0.0091 (5) | 0.0003 (4) |
C24 | 0.0279 (6) | 0.0184 (5) | 0.0152 (5) | −0.0057 (5) | 0.0041 (5) | 0.0009 (4) |
C25 | 0.0135 (5) | 0.0195 (5) | 0.0177 (5) | −0.0019 (4) | 0.0014 (4) | −0.0015 (4) |
C26 | 0.0223 (6) | 0.0161 (5) | 0.0179 (5) | −0.0051 (5) | 0.0020 (4) | 0.0000 (4) |
C27 | 0.0132 (5) | 0.0236 (5) | 0.0200 (5) | 0.0022 (4) | −0.0012 (4) | −0.0044 (4) |
C28 | 0.0292 (7) | 0.0172 (5) | 0.0231 (6) | −0.0062 (5) | 0.0022 (5) | −0.0015 (5) |
C29 | 0.0166 (5) | 0.0157 (5) | 0.0150 (5) | −0.0029 (4) | 0.0024 (4) | −0.0007 (4) |
C30 | 0.0176 (5) | 0.0302 (6) | 0.0210 (5) | −0.0046 (5) | 0.0048 (4) | −0.0044 (5) |
C31 | 0.0201 (6) | 0.0225 (6) | 0.0168 (5) | −0.0013 (5) | −0.0017 (5) | −0.0021 (4) |
C32 | 0.0186 (5) | 0.0210 (5) | 0.0171 (5) | 0.0027 (5) | 0.0013 (4) | −0.0032 (4) |
C33 | 0.0189 (6) | 0.0220 (5) | 0.0266 (6) | 0.0021 (5) | 0.0025 (5) | −0.0028 (5) |
O1—C3 | 1.4303 (14) | C16—C17 | 1.5354 (18) |
O1—H1O | 0.81 (2) | C16—H16A | 0.9900 |
O2—C11 | 1.2284 (14) | C16—H16B | 0.9900 |
O3—C29 | 1.2266 (15) | C17—C28 | 1.5339 (19) |
N1—C29 | 1.3557 (15) | C17—C22 | 1.5438 (16) |
N1—C31 | 1.4468 (17) | C17—C18 | 1.5498 (16) |
N1—H1N | 0.80 (2) | C18—C19 | 1.5439 (17) |
C1—C2 | 1.5335 (15) | C18—H18 | 1.0000 |
C1—C10 | 1.5521 (15) | C19—C20 | 1.5352 (16) |
C1—H1A | 0.9900 | C19—H19A | 0.9900 |
C1—H1B | 0.9900 | C19—H19B | 0.9900 |
C2—C3 | 1.5165 (16) | C20—C29 | 1.5366 (17) |
C2—H2A | 0.9900 | C20—C30 | 1.5381 (18) |
C2—H2B | 0.9900 | C20—C21 | 1.5403 (18) |
C3—C4 | 1.5434 (15) | C21—C22 | 1.5269 (19) |
C3—H3 | 1.0000 | C21—H21A | 0.9900 |
C4—C24 | 1.5373 (17) | C21—H21B | 0.9900 |
C4—C23 | 1.5383 (18) | C22—H22A | 0.9900 |
C4—C5 | 1.5622 (15) | C22—H22B | 0.9900 |
C5—C6 | 1.5328 (15) | C23—H23A | 0.9800 |
C5—C10 | 1.5597 (15) | C23—H23B | 0.9800 |
C5—H5 | 1.0000 | C23—H23C | 0.9800 |
C6—C7 | 1.5276 (16) | C24—H24A | 0.9800 |
C6—H6A | 0.9900 | C24—H24B | 0.9800 |
C6—H6B | 0.9900 | C24—H24C | 0.9800 |
C7—C8 | 1.5397 (16) | C25—H25A | 0.9800 |
C7—H7A | 0.9900 | C25—H25B | 0.9800 |
C7—H7B | 0.9900 | C25—H25C | 0.9800 |
C8—C26 | 1.5429 (17) | C26—H26A | 0.9800 |
C8—C9 | 1.5685 (15) | C26—H26B | 0.9800 |
C8—C14 | 1.5837 (16) | C26—H26C | 0.9800 |
C9—C11 | 1.5286 (15) | C27—H27A | 0.9800 |
C9—C10 | 1.5754 (15) | C27—H27B | 0.9800 |
C9—H9 | 1.0000 | C27—H27C | 0.9800 |
C10—C25 | 1.5505 (17) | C28—H28A | 0.9800 |
C11—C12 | 1.4731 (15) | C28—H28B | 0.9800 |
C12—C13 | 1.3475 (15) | C28—H28C | 0.9800 |
C12—H12 | 0.9500 | C30—H30A | 0.9800 |
C13—C18 | 1.5232 (15) | C30—H30B | 0.9800 |
C13—C14 | 1.5243 (15) | C30—H30C | 0.9800 |
C14—C15 | 1.5539 (16) | C31—C32 | 1.4697 (18) |
C14—C27 | 1.5561 (17) | C31—H31A | 0.9900 |
C15—C16 | 1.5318 (17) | C31—H31B | 0.9900 |
C15—H15A | 0.9900 | C32—C33 | 1.1973 (19) |
C15—H15B | 0.9900 | C33—H33 | 0.9500 |
C3—O1—H1O | 109.5 (15) | H16A—C16—H16B | 107.8 |
C29—N1—C31 | 121.67 (11) | C28—C17—C16 | 110.53 (10) |
C29—N1—H1N | 120.6 (15) | C28—C17—C22 | 107.66 (10) |
C31—N1—H1N | 117.5 (15) | C16—C17—C22 | 109.74 (10) |
C2—C1—C10 | 113.20 (9) | C28—C17—C18 | 109.28 (11) |
C2—C1—H1A | 108.9 | C16—C17—C18 | 109.45 (10) |
C10—C1—H1A | 108.9 | C22—C17—C18 | 110.16 (9) |
C2—C1—H1B | 108.9 | C13—C18—C19 | 109.49 (9) |
C10—C1—H1B | 108.9 | C13—C18—C17 | 112.60 (9) |
H1A—C1—H1B | 107.8 | C19—C18—C17 | 113.74 (10) |
C3—C2—C1 | 111.83 (10) | C13—C18—H18 | 106.9 |
C3—C2—H2A | 109.3 | C19—C18—H18 | 106.9 |
C1—C2—H2A | 109.3 | C17—C18—H18 | 106.9 |
C3—C2—H2B | 109.3 | C20—C19—C18 | 114.03 (9) |
C1—C2—H2B | 109.3 | C20—C19—H19A | 108.7 |
H2A—C2—H2B | 107.9 | C18—C19—H19A | 108.7 |
O1—C3—C2 | 111.97 (9) | C20—C19—H19B | 108.7 |
O1—C3—C4 | 111.69 (9) | C18—C19—H19B | 108.7 |
C2—C3—C4 | 112.72 (10) | H19A—C19—H19B | 107.6 |
O1—C3—H3 | 106.7 | C19—C20—C29 | 109.58 (10) |
C2—C3—H3 | 106.7 | C19—C20—C30 | 109.15 (10) |
C4—C3—H3 | 106.7 | C29—C20—C30 | 106.84 (10) |
C24—C4—C23 | 107.49 (10) | C19—C20—C21 | 108.10 (10) |
C24—C4—C3 | 111.17 (10) | C29—C20—C21 | 111.87 (10) |
C23—C4—C3 | 106.98 (10) | C30—C20—C21 | 111.27 (11) |
C24—C4—C5 | 114.57 (10) | C22—C21—C20 | 111.39 (10) |
C23—C4—C5 | 109.76 (10) | C22—C21—H21A | 109.4 |
C3—C4—C5 | 106.64 (9) | C20—C21—H21A | 109.4 |
C6—C5—C10 | 111.30 (10) | C22—C21—H21B | 109.4 |
C6—C5—C4 | 113.55 (9) | C20—C21—H21B | 109.4 |
C10—C5—C4 | 117.20 (9) | H21A—C21—H21B | 108.0 |
C6—C5—H5 | 104.4 | C21—C22—C17 | 114.17 (10) |
C10—C5—H5 | 104.4 | C21—C22—H22A | 108.7 |
C4—C5—H5 | 104.4 | C17—C22—H22A | 108.7 |
C7—C6—C5 | 109.85 (10) | C21—C22—H22B | 108.7 |
C7—C6—H6A | 109.7 | C17—C22—H22B | 108.7 |
C5—C6—H6A | 109.7 | H22A—C22—H22B | 107.6 |
C7—C6—H6B | 109.7 | C4—C23—H23A | 109.5 |
C5—C6—H6B | 109.7 | C4—C23—H23B | 109.5 |
H6A—C6—H6B | 108.2 | H23A—C23—H23B | 109.5 |
C6—C7—C8 | 113.25 (10) | C4—C23—H23C | 109.5 |
C6—C7—H7A | 108.9 | H23A—C23—H23C | 109.5 |
C8—C7—H7A | 108.9 | H23B—C23—H23C | 109.5 |
C6—C7—H7B | 108.9 | C4—C24—H24A | 109.5 |
C8—C7—H7B | 108.9 | C4—C24—H24B | 109.5 |
H7A—C7—H7B | 107.7 | H24A—C24—H24B | 109.5 |
C7—C8—C26 | 107.12 (9) | C4—C24—H24C | 109.5 |
C7—C8—C9 | 110.90 (9) | H24A—C24—H24C | 109.5 |
C26—C8—C9 | 109.97 (10) | H24B—C24—H24C | 109.5 |
C7—C8—C14 | 110.46 (9) | C10—C25—H25A | 109.5 |
C26—C8—C14 | 110.56 (9) | C10—C25—H25B | 109.5 |
C9—C8—C14 | 107.85 (9) | H25A—C25—H25B | 109.5 |
C11—C9—C8 | 108.51 (9) | C10—C25—H25C | 109.5 |
C11—C9—C10 | 116.09 (9) | H25A—C25—H25C | 109.5 |
C8—C9—C10 | 117.61 (9) | H25B—C25—H25C | 109.5 |
C11—C9—H9 | 104.3 | C8—C26—H26A | 109.5 |
C8—C9—H9 | 104.3 | C8—C26—H26B | 109.5 |
C10—C9—H9 | 104.3 | H26A—C26—H26B | 109.5 |
C25—C10—C1 | 108.37 (9) | C8—C26—H26C | 109.5 |
C25—C10—C5 | 114.24 (9) | H26A—C26—H26C | 109.5 |
C1—C10—C5 | 107.33 (9) | H26B—C26—H26C | 109.5 |
C25—C10—C9 | 112.28 (9) | C14—C27—H27A | 109.5 |
C1—C10—C9 | 108.19 (9) | C14—C27—H27B | 109.5 |
C5—C10—C9 | 106.18 (9) | H27A—C27—H27B | 109.5 |
O2—C11—C12 | 119.14 (10) | C14—C27—H27C | 109.5 |
O2—C11—C9 | 123.22 (10) | H27A—C27—H27C | 109.5 |
C12—C11—C9 | 117.63 (10) | H27B—C27—H27C | 109.5 |
C13—C12—C11 | 124.71 (10) | C17—C28—H28A | 109.5 |
C13—C12—H12 | 117.6 | C17—C28—H28B | 109.5 |
C11—C12—H12 | 117.6 | H28A—C28—H28B | 109.5 |
C12—C13—C18 | 119.21 (10) | C17—C28—H28C | 109.5 |
C12—C13—C14 | 119.44 (10) | H28A—C28—H28C | 109.5 |
C18—C13—C14 | 121.08 (9) | H28B—C28—H28C | 109.5 |
C13—C14—C15 | 112.83 (9) | O3—C29—N1 | 121.48 (12) |
C13—C14—C27 | 106.08 (9) | O3—C29—C20 | 122.60 (11) |
C15—C14—C27 | 106.96 (10) | N1—C29—C20 | 115.86 (11) |
C13—C14—C8 | 108.94 (9) | C20—C30—H30A | 109.5 |
C15—C14—C8 | 110.00 (9) | C20—C30—H30B | 109.5 |
C27—C14—C8 | 112.00 (9) | H30A—C30—H30B | 109.5 |
C16—C15—C14 | 114.17 (10) | C20—C30—H30C | 109.5 |
C16—C15—H15A | 108.7 | H30A—C30—H30C | 109.5 |
C14—C15—H15A | 108.7 | H30B—C30—H30C | 109.5 |
C16—C15—H15B | 108.7 | N1—C31—C32 | 112.85 (11) |
C14—C15—H15B | 108.7 | N1—C31—H31A | 109.0 |
H15A—C15—H15B | 107.6 | C32—C31—H31A | 109.0 |
C15—C16—C17 | 112.68 (11) | N1—C31—H31B | 109.0 |
C15—C16—H16A | 109.1 | C32—C31—H31B | 109.0 |
C17—C16—H16A | 109.1 | H31A—C31—H31B | 107.8 |
C15—C16—H16B | 109.1 | C33—C32—C31 | 178.94 (15) |
C17—C16—H16B | 109.1 | C32—C33—H33 | 180.0 |
C10—C1—C2—C3 | −56.26 (13) | C12—C13—C14—C27 | 88.45 (13) |
C1—C2—C3—O1 | −174.64 (9) | C18—C13—C14—C27 | −85.52 (12) |
C1—C2—C3—C4 | 58.41 (13) | C12—C13—C14—C8 | −32.28 (14) |
O1—C3—C4—C24 | −56.59 (13) | C18—C13—C14—C8 | 153.74 (10) |
C2—C3—C4—C24 | 70.50 (12) | C7—C8—C14—C13 | −177.79 (9) |
O1—C3—C4—C23 | 60.48 (13) | C26—C8—C14—C13 | −59.40 (11) |
C2—C3—C4—C23 | −172.42 (10) | C9—C8—C14—C13 | 60.87 (12) |
O1—C3—C4—C5 | 177.88 (10) | C7—C8—C14—C15 | −53.63 (13) |
C2—C3—C4—C5 | −55.02 (12) | C26—C8—C14—C15 | 64.75 (12) |
C24—C4—C5—C6 | 63.27 (14) | C9—C8—C14—C15 | −174.98 (10) |
C23—C4—C5—C6 | −57.75 (14) | C7—C8—C14—C27 | 65.18 (12) |
C3—C4—C5—C6 | −173.29 (11) | C26—C8—C14—C27 | −176.43 (9) |
C24—C4—C5—C10 | −68.75 (13) | C9—C8—C14—C27 | −56.16 (12) |
C23—C4—C5—C10 | 170.23 (10) | C13—C14—C15—C16 | −37.49 (16) |
C3—C4—C5—C10 | 54.69 (13) | C27—C14—C15—C16 | 78.78 (13) |
C10—C5—C6—C7 | −65.10 (14) | C8—C14—C15—C16 | −159.35 (11) |
C4—C5—C6—C7 | 160.06 (10) | C14—C15—C16—C17 | 54.15 (15) |
C5—C6—C7—C8 | 58.01 (14) | C15—C16—C17—C28 | 60.43 (13) |
C6—C7—C8—C26 | 73.20 (12) | C15—C16—C17—C22 | 179.01 (10) |
C6—C7—C8—C9 | −46.81 (14) | C15—C16—C17—C18 | −59.98 (14) |
C6—C7—C8—C14 | −166.33 (10) | C12—C13—C18—C19 | −85.20 (13) |
C7—C8—C9—C11 | 178.96 (10) | C14—C13—C18—C19 | 88.79 (12) |
C26—C8—C9—C11 | 60.67 (12) | C12—C13—C18—C17 | 147.22 (12) |
C14—C8—C9—C11 | −59.97 (12) | C14—C13—C18—C17 | −38.79 (15) |
C7—C8—C9—C10 | 44.66 (14) | C28—C17—C18—C13 | −70.48 (12) |
C26—C8—C9—C10 | −73.64 (12) | C16—C17—C18—C13 | 50.69 (13) |
C14—C8—C9—C10 | 165.72 (9) | C22—C17—C18—C13 | 171.44 (10) |
C2—C1—C10—C25 | −72.74 (12) | C28—C17—C18—C19 | 164.22 (10) |
C2—C1—C10—C5 | 51.10 (12) | C16—C17—C18—C19 | −74.61 (12) |
C2—C1—C10—C9 | 165.29 (10) | C22—C17—C18—C19 | 46.14 (14) |
C6—C5—C10—C25 | −65.74 (13) | C13—C18—C19—C20 | −178.29 (9) |
C4—C5—C10—C25 | 67.29 (13) | C17—C18—C19—C20 | −51.35 (14) |
C6—C5—C10—C1 | 174.08 (10) | C18—C19—C20—C29 | −66.74 (13) |
C4—C5—C10—C1 | −52.88 (12) | C18—C19—C20—C30 | 176.58 (10) |
C6—C5—C10—C9 | 58.55 (12) | C18—C19—C20—C21 | 55.41 (13) |
C4—C5—C10—C9 | −168.41 (9) | C19—C20—C21—C22 | −57.84 (13) |
C11—C9—C10—C25 | −55.10 (13) | C29—C20—C21—C22 | 62.90 (13) |
C8—C9—C10—C25 | 75.83 (12) | C30—C20—C21—C22 | −177.68 (10) |
C11—C9—C10—C1 | 64.45 (12) | C20—C21—C22—C17 | 57.88 (14) |
C8—C9—C10—C1 | −164.63 (10) | C28—C17—C22—C21 | −169.30 (10) |
C11—C9—C10—C5 | 179.40 (9) | C16—C17—C22—C21 | 70.36 (13) |
C8—C9—C10—C5 | −49.68 (13) | C18—C17—C22—C21 | −50.22 (14) |
C8—C9—C11—O2 | −149.86 (12) | C31—N1—C29—O3 | −2.50 (19) |
C10—C9—C11—O2 | −14.78 (17) | C31—N1—C29—C20 | 174.64 (11) |
C8—C9—C11—C12 | 31.32 (14) | C19—C20—C29—O3 | −20.57 (16) |
C10—C9—C11—C12 | 166.40 (10) | C30—C20—C29—O3 | 97.56 (14) |
O2—C11—C12—C13 | 179.31 (12) | C21—C20—C29—O3 | −140.44 (12) |
C9—C11—C12—C13 | −1.82 (18) | C19—C20—C29—N1 | 162.32 (10) |
C11—C12—C13—C18 | 176.53 (11) | C30—C20—C29—N1 | −79.55 (13) |
C11—C12—C13—C14 | 2.44 (18) | C21—C20—C29—N1 | 42.45 (14) |
C12—C13—C14—C15 | −154.75 (11) | C29—N1—C31—C32 | 106.52 (14) |
C18—C13—C14—C15 | 31.27 (15) |
Please add C—H···π interaction to table |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···C32i | 0.81 (2) | 2.57 (2) | 3.3559 (17) | 164 (2) |
O1—H1O···C33i | 0.81 (2) | 2.40 (2) | 3.0973 (17) | 145 (2) |
N1—H1N···O2ii | 0.80 (2) | 2.57 (2) | 3.2511 (15) | 144 (2) |
C31—H31B···O1iii | 0.99 | 2.56 | 3.2541 (17) | 127 |
C33—H33···O2iv | 0.95 | 2.27 | 3.1154 (17) | 148 |
Symmetry codes: (i) −x+3/2, −y+1, z−1/2; (ii) −x+1, y+1/2, −z+1/2; (iii) −x+1/2, −y+1, z+1/2; (iv) −x+2, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C33H49NO3 |
Mr | 507.73 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 6.7534 (8), 13.4879 (16), 31.132 (4) |
V (Å3) | 2835.8 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.56 × 0.43 × 0.38 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.87, 0.97 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 41876, 4658, 4531 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.089, 1.08 |
No. of reflections | 4658 |
No. of parameters | 349 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.36, −0.21 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SAINT, SADABS and XPREP (Bruker, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Mercury (Macrae et al., 2006), PLATON (Spek, 2009) and publCIF (Westrip, 2010).
Please add C—H···π interaction to table |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···C32i | 0.81 (2) | 2.57 (2) | 3.3559 (17) | 164 (2) |
O1—H1O···C33i | 0.81 (2) | 2.40 (2) | 3.0973 (17) | 145 (2) |
N1—H1N···O2ii | 0.80 (2) | 2.57 (2) | 3.2511 (15) | 144 (2) |
C31—H31B···O1iii | 0.99 | 2.56 | 3.2541 (17) | 126.9 |
C33—H33···O2iv | 0.95 | 2.27 | 3.1154 (17) | 147.7 |
Symmetry codes: (i) −x+3/2, −y+1, z−1/2; (ii) −x+1, y+1/2, −z+1/2; (iii) −x+1/2, −y+1, z+1/2; (iv) −x+2, y+1/2, −z+1/2. |
Acknowledgements
The work was supported by the ZIT Zentrum für Innovation und Technologie GmbH (Vienna Spot of Excellence, 182081).
References
Alvarez-Larena, A., Brianso, J. L., Capparelli, M. V., Farran, J. & Piniella, J. F. (2007). Afinidad, 64, 278–283. CAS Google Scholar
Amer, H., Mereiter, K., Stanetty, C., Hofinger, A., Czollner, L., Beseda, I., Jordis, U., Kueenburg, B., Classen-Houben, D. & Kosma, P. (2010). Tetrahedron, 66, 4390–4402. Web of Science CSD CrossRef CAS Google Scholar
Asl, M. N. & Hosseinzadeh, H. (2008). Phytother. Res. 22, 709–724. Web of Science CrossRef PubMed CAS Google Scholar
Baran, J. S., Langford, D. D., Liang, C. & Pitzele, B. S. (1974). J. Med. Chem. 17, 184–191. CrossRef CAS PubMed Web of Science Google Scholar
Beseda, I., Czollner, L., Shah, P. S., Khunt, R., Gaware, R., Kosma, P., Stanetty, C., del Ruiz-Ruiz, M. C., Amer, H., Mereiter, K., Da Cunha, T., Odermatt, A., Classen-Houben, D. & Jordis, U. (2010). Bioorg. Med. Chem. 18, 433–454. Web of Science CSD CrossRef PubMed CAS Google Scholar
Bruker (2008). APEX2, SAINT, SADABS and XPREP. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Campsteyn, H., Dupont, L., Lamotte, J., Dideberg, O. & Vermeire, M. (1977). Acta Cryst. B33, 3443–3448. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Desiraju, G. R. & Steiner, T. (1999). The Weak Hydrogen Bond in Structural Chemistry and Biology. New York: Oxford University Press Inc. Google Scholar
Frey, W., Schetter, S., Rominger, F. & Hashmi, A. S. K. (2008). Acta Cryst. E64, o1495. Web of Science CSD CrossRef IUCr Journals Google Scholar
Hashmi, A. S. K., Weyrauch, J. P., Frey, W. & Bats, J. W. (2004). Org. Lett. 6, 4391–4394. Web of Science CrossRef PubMed CAS Google Scholar
Kitagawa, I. (2002). Pure Appl. Chem. 74, 1189–1198. Web of Science CrossRef CAS Google Scholar
Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Su, X., Lawrence, H., Ganeshapillai, D., Cruttenden, A., Purohit, A., Reed, M. J., Vicker, N. & Potter, B. V. L. (2004). Bioorg. Med. Chem. 12, 4439–4457. Web of Science CrossRef PubMed CAS Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
18β-glycyrrhetinic acid (GA) is a pentacyclic triterpene and the aglycone of glycyrrhizin, the main sweet tasting compound from liquorice root in use as flavoring and sweetener (Kitagawa, 2002). GA is a therapeutic agent with a broad range of activity by modulating the steroid hormone cortisol (Baran et al., 1974; Asl & Hosseinzadeh, 2008). One strategy to improve or modify its therapeutic profile is to leave the triterpene core of GA unaltered and to attach suitable functional groups to its 3-hydroxy group (Su et al., 2004). An example for this strategy is the hydrogen succinate of GA, the licenced anti-ulcer drug Carbenoxolone. An analogous approach was used for the title compound (I), here however with the COOH group at the opposite side of GA functionalized by a propargylamide group. The synthesis of this compound and a series of relatives was recently described (Beseda et al., 2010). Here we report the crystal structure of this compound. The molecular structure of (I) is shown in Fig. 1. The GA core of the molecule consists of four six-membered rings A, B, D, and E in chair conformation and the unsaturated ring C in half-chair conformation (Fig. 1). The GA core agrees well in bond lengths, bond angles, and conformation with related compounds (Campsteyn et al., 1977; Alvarez-Larena et al., 2007; Beseda et al., 2010) and needs no further discussion. The carboxamide group O3═C29—N1 is exo-oriented with respect to N, C18—C20—C29—N1 = 162.3 (1)°. In case of endo-orientation (rare) this angle is about -30° (for examples, see: Amer et al., 2010). The propargyl group has a C32≡C33 bond length of 1.197 (2) Å and an orientation defined by the torsion angle C29—N1—C31—C32 = 106.5 (1)°. In N-propargylcarboxamides this torsion angle varies widely (Hashmi et al., 2004; Frey et al., 2008). In the unit cell the molecules of (I) are aligned with their longest direction slightly inclined to the c-axis and adopt in this direction an undular head-to-tail-like arrangement (Fig. 2). Along the short a-axis (6.75 Å) the molecules are stacked directly upon each other by translation. Coherence of the structure is provided by a combination of van der Waals and weak hydrogen bond interactions listed in Table 1. Most interesting in this respect are the interactions of the N-propargylcarboxamide group outlined in Fig. 3. The terminal alkyne group C32≡C33—H33 has a distinctly acidic hydrogen atom and forms the by far shortest weak hydrogen bond-like interaction of the structure with distances of H33···O2iv = 2.27 Å and C33···O2iv = 3.115 (2) Å to the 11-keto-oxygen of the compound. After normalization (C—H = 1.083 Å; Desiraju & Steiner, 1999), the distance H33···O2iv is 2.16 Å, distinctly shorter than the mean distance d(H···O) = 2.29 (3) Å reported by Desiraju & Steiner (1999; Table 2.3 of this reference) for C≡C—H···O═C< entities. The second remarkable association in Fig. 3 is the intermolecular O—H···π interaction from the hydroxy group O1v—H1ov side-on to the two alkyne carbon atoms C32 and C33. The normalized H1ov···C distances (O1—H1o normalized to 0.983 Å), are 2.26 Å to C33 and 2.41 Å to C32, and correspond to the shortest O—H···π interactions reported by Desiraju & Steiner (1999; Table 3.12 of this reference). Comparable C—H···O and X—H···π interactions with mostly longer respective interatomic distances can be found in a small group of N-propargylcarboxamide containing crystal structures reported by Hashmi and coworkers in context with oxazole ring forming reactions (Hashmi et al., 2004; Frey et al., 2008).