metal-organic compounds
Poly[[diaqua[μ5-(R,S)-2-({2-[(1,2-dicarboxylatoethyl)amino]ethyl}amino)butanedioato]cobaltate(III)sodium] dihydrate]
aInstitute of General and Inorganic Chemistry, NAS Ukraine, Kyiv, prosp. Palladina 32/34, 03680, Ukraine
*Correspondence e-mail: trunova@ionc.kiev.ua
In the 10H12N2O8)(H2O)2]·2H2O}n, the CoII ion is coordinated in a distorted octahedral environment, defined by two N atoms and four carboxylate O atoms. Two CoII ions and two 2-({2-[(1,2-dicarboxylatoethyl)amino]ethyl}amino)butanedioate (EDDS) ligands form a dimeric complex dianion [Co2(EDDS)2]. These dimeric units are connected via Na+ ions, forming a three-dimensional polymeric structure. In the crystal, the ligand N—H groups and the coordinated and solvent water molecules are involved in intermolecular N—H⋯O and O—H⋯O hydrogen bonding, reinforcing the three-dimensional polymeric structure.
of the title coordination polymer, {[CoNa(CRelated literature
For the synthesis and applications of EDDS and its complexes, see: Jones & Williams (2001); Kos & Leštan (2003); Mazurenko & Trunova (2001); Meers et al. (2005); Shadchina et al. (2008); Tandy et al. (2004, 2006); Vandevivere et al. (2001). For related structures, see: Horn et al. (1993); Pavelčík et al. (1980). For standard bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2010); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S160053681104013X/lh5329sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681104013X/lh5329Isup2.hkl
A mixture of CoCl2.6H2O (2.38 g, 10 mmol) and EDDS (2.92 g, 10 mmol) were dissolved in distilled water (10 ml). The pH was then adjusted to 4.5 by concentrated NaOH solution. Reaction mixture was refluxed with stirring for 24 h. After cooling to room temperature diethyl ether was added into the solution giving a powder crude product. Precipitate was filtered of and washed with methanol for several times (yield 86%). The resulting residue was dissolved in water and was stored in a dark place for slow evaporation. After 4 days suitable crystals for X-ray data collection were obtained.
H atoms bonded to O and N atoms were located in a difference Fourier map. Their positions were refined freely whereas thermal parameters were fixed to Uiso(H) = 1.5Ueq(N,O). To avoid short contacts between H91 and H112 they were refined with distance restraint (H···H= 2.3 ±0.02 Å). H atoms bonded to C were positioned geometrically and refined using a riding model with C—H = 0.99 Å for CH2 and C—H = 1.00 Å for CH with Uiso(H) = 1.2Ueq(C).
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2010); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. The asymmetric unit of the title compound with ellipsoids are drawn at the 50% probability level. H atoms are represented as small spheres of arbitrary radii. | |
Fig. 2. Part of the polymeric structure of the title compound formed by sodium ions. | |
Fig. 3. Crystal packing of title compound, projected along the a axis. Dashed lines indicate hydrogen bonds. |
[CoNa(C10H12N2O8)(H2O)2]·2H2O | F(000) = 1824 |
Mr = 442.20 | Dx = 1.838 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 4049 reflections |
a = 10.0207 (2) Å | θ = 2.6–26.1° |
b = 15.6475 (2) Å | µ = 1.17 mm−1 |
c = 20.3837 (4) Å | T = 100 K |
V = 3196.14 (10) Å3 | Diamond, violet |
Z = 8 | 0.32 × 0.28 × 0.13 mm |
Bruker SMART APEXII diffractometer | 3161 independent reflections |
Radiation source: fine-focus sealed tube | 2549 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.042 |
ϕ and ω scans | θmax = 26.1°, θmin = 2.0° |
Absorption correction: numerical (SADABS; Sheldrick, 1996) | h = −7→12 |
Tmin = 0.706, Tmax = 0.863 | k = −19→19 |
11219 measured reflections | l = −25→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.029 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.065 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.97 | w = 1/[σ2(Fo2) + (0.0324P)2] where P = (Fo2 + 2Fc2)/3 |
3161 reflections | (Δ/σ)max < 0.001 |
265 parameters | Δρmax = 0.34 e Å−3 |
1 restraint | Δρmin = −0.50 e Å−3 |
[CoNa(C10H12N2O8)(H2O)2]·2H2O | V = 3196.14 (10) Å3 |
Mr = 442.20 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 10.0207 (2) Å | µ = 1.17 mm−1 |
b = 15.6475 (2) Å | T = 100 K |
c = 20.3837 (4) Å | 0.32 × 0.28 × 0.13 mm |
Bruker SMART APEXII diffractometer | 3161 independent reflections |
Absorption correction: numerical (SADABS; Sheldrick, 1996) | 2549 reflections with I > 2σ(I) |
Tmin = 0.706, Tmax = 0.863 | Rint = 0.042 |
11219 measured reflections |
R[F2 > 2σ(F2)] = 0.029 | 1 restraint |
wR(F2) = 0.065 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.97 | Δρmax = 0.34 e Å−3 |
3161 reflections | Δρmin = −0.50 e Å−3 |
265 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Co1 | 0.09689 (3) | 0.387117 (14) | 0.083088 (13) | 0.00826 (9) | |
Na1 | 0.39217 (9) | 0.53940 (5) | 0.21505 (4) | 0.0178 (2) | |
C1 | 0.1871 (2) | 0.38312 (11) | −0.04223 (10) | 0.0104 (4) | |
C2 | 0.0531 (2) | 0.33752 (11) | −0.04526 (9) | 0.0100 (4) | |
H2 | 0.0712 | 0.2749 | −0.0414 | 0.012* | |
C3 | −0.1234 (2) | 0.29948 (11) | 0.03843 (10) | 0.0120 (5) | |
H3A | −0.0830 | 0.2418 | 0.0400 | 0.014* | |
H3B | −0.2034 | 0.2975 | 0.0099 | 0.014* | |
C4 | −0.1601 (2) | 0.32957 (12) | 0.10675 (10) | 0.0130 (5) | |
H4A | −0.2192 | 0.3801 | 0.1038 | 0.016* | |
H4B | −0.2088 | 0.2838 | 0.1302 | 0.016* | |
C5 | 0.0280 (2) | 0.28136 (11) | 0.18052 (10) | 0.0111 (4) | |
H5 | −0.0412 | 0.2455 | 0.2027 | 0.013* | |
C6 | 0.1054 (2) | 0.22824 (12) | 0.13122 (10) | 0.0118 (4) | |
C7 | 0.1248 (2) | 0.31881 (11) | 0.23126 (10) | 0.0123 (5) | |
H7A | 0.0714 | 0.3483 | 0.2653 | 0.015* | |
H7B | 0.1714 | 0.2707 | 0.2529 | 0.015* | |
C8 | 0.2302 (2) | 0.38128 (11) | 0.20641 (10) | 0.0124 (5) | |
C9 | 0.0287 (2) | 0.55445 (11) | 0.13005 (10) | 0.0106 (4) | |
C10 | 0.0175 (2) | 0.64820 (11) | 0.11074 (10) | 0.0111 (4) | |
H10A | 0.1083 | 0.6729 | 0.1082 | 0.013* | |
H10B | −0.0317 | 0.6792 | 0.1455 | 0.013* | |
N1 | −0.02558 (17) | 0.36314 (9) | 0.01328 (8) | 0.0087 (4) | |
H1N | −0.065 (2) | 0.4093 (12) | 0.0043 (10) | 0.010* | |
N2 | −0.03629 (17) | 0.35219 (10) | 0.14370 (8) | 0.0102 (4) | |
H2N | −0.057 (2) | 0.3904 (12) | 0.1691 (11) | 0.012* | |
O1 | 0.22354 (14) | 0.41008 (8) | 0.01494 (6) | 0.0105 (3) | |
O2 | 0.25654 (16) | 0.39053 (8) | −0.09163 (7) | 0.0163 (3) | |
O3 | 0.15026 (14) | 0.27071 (7) | 0.08149 (6) | 0.0113 (3) | |
O4 | 0.12621 (15) | 0.15144 (8) | 0.14003 (7) | 0.0158 (3) | |
O5 | 0.22710 (14) | 0.41130 (8) | 0.14795 (7) | 0.0119 (3) | |
O6 | 0.31703 (15) | 0.40383 (8) | 0.24573 (7) | 0.0184 (4) | |
O7 | 0.04285 (14) | 0.50388 (7) | 0.08043 (6) | 0.0107 (3) | |
O8 | 0.02390 (15) | 0.53288 (8) | 0.18835 (7) | 0.0156 (3) | |
O9 | 0.56412 (18) | 0.49111 (10) | 0.15130 (8) | 0.0245 (4) | |
H91 | 0.537 (3) | 0.4471 (15) | 0.1319 (11) | 0.037* | |
H92 | 0.605 (3) | 0.5215 (16) | 0.1272 (14) | 0.037* | |
O10 | 0.22692 (18) | 0.62299 (10) | 0.26905 (8) | 0.0214 (4) | |
H101 | 0.162 (3) | 0.5949 (15) | 0.2558 (12) | 0.032* | |
H102 | 0.229 (3) | 0.6165 (15) | 0.3088 (13) | 0.032* | |
O11 | 0.49078 (18) | 0.36011 (9) | 0.06961 (9) | 0.0253 (4) | |
H111 | 0.415 (3) | 0.3726 (17) | 0.0657 (14) | 0.038* | |
H112 | 0.539 (3) | 0.3836 (15) | 0.0329 (11) | 0.038* | |
O12 | 0.33610 (19) | 0.57331 (10) | 0.01853 (8) | 0.0241 (4) | |
H121 | 0.320 (3) | 0.5253 (16) | 0.0228 (13) | 0.036* | |
H122 | 0.348 (3) | 0.5872 (17) | 0.0539 (14) | 0.036* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.00957 (17) | 0.00764 (12) | 0.00757 (14) | 0.00002 (11) | −0.00016 (12) | 0.00084 (11) |
Na1 | 0.0234 (5) | 0.0147 (4) | 0.0153 (4) | 0.0012 (4) | 0.0001 (4) | 0.0032 (3) |
C1 | 0.0113 (12) | 0.0080 (8) | 0.0119 (10) | 0.0028 (8) | −0.0009 (9) | 0.0029 (8) |
C2 | 0.0141 (12) | 0.0078 (8) | 0.0082 (10) | 0.0000 (8) | 0.0013 (9) | −0.0007 (8) |
C3 | 0.0110 (12) | 0.0123 (8) | 0.0126 (11) | −0.0031 (8) | −0.0009 (9) | 0.0017 (8) |
C4 | 0.0081 (12) | 0.0163 (9) | 0.0145 (11) | −0.0004 (9) | −0.0002 (9) | 0.0017 (8) |
C5 | 0.0118 (12) | 0.0109 (8) | 0.0105 (10) | 0.0002 (8) | −0.0009 (9) | 0.0036 (8) |
C6 | 0.0103 (12) | 0.0137 (9) | 0.0114 (10) | −0.0008 (9) | −0.0040 (9) | 0.0008 (8) |
C7 | 0.0142 (13) | 0.0125 (9) | 0.0103 (10) | 0.0026 (9) | −0.0011 (9) | −0.0008 (8) |
C8 | 0.0142 (13) | 0.0097 (8) | 0.0134 (11) | 0.0043 (8) | −0.0005 (10) | 0.0002 (8) |
C9 | 0.0048 (12) | 0.0128 (9) | 0.0143 (11) | −0.0016 (8) | −0.0008 (9) | 0.0000 (8) |
C10 | 0.0135 (13) | 0.0106 (9) | 0.0092 (10) | −0.0004 (8) | 0.0006 (9) | −0.0007 (8) |
N1 | 0.0099 (10) | 0.0072 (7) | 0.0089 (9) | 0.0014 (7) | −0.0001 (7) | 0.0011 (7) |
N2 | 0.0103 (10) | 0.0099 (7) | 0.0104 (9) | 0.0017 (7) | −0.0001 (8) | −0.0010 (7) |
O1 | 0.0091 (8) | 0.0117 (6) | 0.0107 (7) | −0.0014 (6) | 0.0005 (6) | 0.0008 (6) |
O2 | 0.0159 (9) | 0.0223 (7) | 0.0107 (8) | −0.0029 (6) | 0.0031 (7) | −0.0004 (6) |
O3 | 0.0126 (8) | 0.0099 (6) | 0.0114 (7) | 0.0018 (6) | 0.0007 (6) | 0.0014 (6) |
O4 | 0.0241 (10) | 0.0095 (6) | 0.0138 (8) | 0.0018 (6) | −0.0011 (7) | 0.0015 (6) |
O5 | 0.0116 (9) | 0.0137 (6) | 0.0103 (7) | −0.0014 (6) | −0.0021 (6) | 0.0013 (6) |
O6 | 0.0203 (9) | 0.0198 (7) | 0.0153 (8) | −0.0051 (6) | −0.0078 (7) | 0.0024 (6) |
O7 | 0.0138 (8) | 0.0086 (6) | 0.0097 (7) | 0.0011 (6) | −0.0005 (6) | 0.0008 (6) |
O8 | 0.0229 (10) | 0.0156 (6) | 0.0083 (7) | 0.0033 (6) | 0.0017 (7) | 0.0016 (6) |
O9 | 0.0310 (12) | 0.0211 (8) | 0.0214 (9) | −0.0064 (7) | 0.0051 (8) | −0.0005 (7) |
O10 | 0.0232 (10) | 0.0246 (8) | 0.0163 (8) | −0.0030 (7) | −0.0002 (8) | 0.0023 (7) |
O11 | 0.0174 (10) | 0.0180 (7) | 0.0405 (11) | 0.0026 (7) | 0.0020 (9) | −0.0021 (7) |
O12 | 0.0380 (12) | 0.0140 (7) | 0.0202 (9) | −0.0057 (7) | −0.0033 (9) | 0.0003 (7) |
Co1—O5 | 1.8957 (14) | C5—C7 | 1.534 (3) |
Co1—O3 | 1.8987 (12) | C5—H5 | 1.0000 |
Co1—N2 | 1.8990 (17) | C6—O4 | 1.233 (2) |
Co1—O7 | 1.9064 (12) | C6—O3 | 1.293 (2) |
Co1—O1 | 1.9155 (13) | C7—C8 | 1.526 (3) |
Co1—N1 | 1.9161 (17) | C7—H7A | 0.9900 |
Na1—O9 | 2.2866 (19) | C7—H7B | 0.9900 |
Na1—O4i | 2.3336 (15) | C8—O6 | 1.234 (2) |
Na1—O6 | 2.3363 (15) | C8—O5 | 1.281 (2) |
Na1—O8ii | 2.3728 (16) | C9—O8 | 1.236 (2) |
Na1—O10 | 2.3800 (19) | C9—O7 | 1.292 (2) |
Na1—O5 | 2.9368 (15) | C9—C10 | 1.523 (2) |
Na1—H101 | 2.60 (3) | C10—C2iii | 1.527 (3) |
C1—O2 | 1.229 (2) | C10—H10A | 0.9900 |
C1—O1 | 1.292 (2) | C10—H10B | 0.9900 |
C1—C2 | 1.522 (3) | N1—H1N | 0.84 (2) |
C2—N1 | 1.485 (2) | N2—H2N | 0.82 (2) |
C2—C10iii | 1.527 (3) | O4—Na1iv | 2.3336 (15) |
C2—H2 | 1.0000 | O8—Na1v | 2.3728 (16) |
C3—N1 | 1.489 (2) | O9—H91 | 0.84 (2) |
C3—C4 | 1.515 (3) | O9—H92 | 0.80 (3) |
C3—H3A | 0.9900 | O10—H101 | 0.83 (2) |
C3—H3B | 0.9900 | O10—H102 | 0.82 (3) |
C4—N2 | 1.494 (3) | O11—H111 | 0.79 (3) |
C4—H4A | 0.9900 | O11—H112 | 0.96 (3) |
C4—H4B | 0.9900 | O12—H121 | 0.77 (3) |
C5—N2 | 1.486 (2) | O12—H122 | 0.76 (3) |
C5—C6 | 1.517 (3) | ||
O5—Co1—O3 | 90.55 (6) | N2—C5—C6 | 107.20 (16) |
O5—Co1—N2 | 95.02 (7) | N2—C5—C7 | 109.25 (15) |
O3—Co1—N2 | 86.16 (6) | C6—C5—C7 | 109.43 (17) |
O5—Co1—O7 | 91.37 (6) | N2—C5—H5 | 110.3 |
O3—Co1—O7 | 177.39 (6) | C6—C5—H5 | 110.3 |
N2—Co1—O7 | 95.43 (6) | C7—C5—H5 | 110.3 |
O5—Co1—O1 | 90.70 (6) | O4—C6—O3 | 123.80 (19) |
O3—Co1—O1 | 88.91 (6) | O4—C6—C5 | 121.60 (18) |
N2—Co1—O1 | 172.47 (6) | O3—C6—C5 | 114.56 (15) |
O7—Co1—O1 | 89.30 (5) | C8—C7—C5 | 117.30 (17) |
O5—Co1—N1 | 176.22 (7) | C8—C7—H7A | 108.0 |
O3—Co1—N1 | 88.84 (6) | C5—C7—H7A | 108.0 |
N2—Co1—N1 | 88.66 (7) | C8—C7—H7B | 108.0 |
O7—Co1—N1 | 89.12 (6) | C5—C7—H7B | 108.0 |
O1—Co1—N1 | 85.56 (7) | H7A—C7—H7B | 107.2 |
O9—Na1—O4i | 86.29 (6) | O6—C8—O5 | 121.08 (19) |
O9—Na1—O6 | 95.44 (6) | O6—C8—C7 | 117.10 (18) |
O4i—Na1—O6 | 146.32 (6) | O5—C8—C7 | 121.79 (18) |
O9—Na1—O8ii | 92.19 (6) | O8—C9—O7 | 126.13 (17) |
O4i—Na1—O8ii | 128.32 (6) | O8—C9—C10 | 120.57 (17) |
O6—Na1—O8ii | 85.30 (5) | O7—C9—C10 | 113.31 (16) |
O9—Na1—O10 | 165.64 (6) | C9—C10—C2iii | 113.63 (15) |
O4i—Na1—O10 | 80.52 (6) | C9—C10—H10A | 108.8 |
O6—Na1—O10 | 98.69 (6) | C2iii—C10—H10A | 108.8 |
O8ii—Na1—O10 | 91.54 (6) | C9—C10—H10B | 108.8 |
O9—Na1—O5 | 86.23 (5) | C2iii—C10—H10B | 108.8 |
O4i—Na1—O5 | 99.39 (5) | H10A—C10—H10B | 107.7 |
O6—Na1—O5 | 47.42 (5) | C2—N1—C3 | 116.47 (14) |
O8ii—Na1—O5 | 132.10 (5) | C2—N1—Co1 | 108.02 (12) |
O10—Na1—O5 | 101.46 (6) | C3—N1—Co1 | 107.29 (12) |
O9—Na1—H101 | 163.8 (6) | C2—N1—H1N | 107.7 (15) |
O4i—Na1—H101 | 83.6 (5) | C3—N1—H1N | 109.9 (14) |
O6—Na1—H101 | 86.1 (5) | Co1—N1—H1N | 107.0 (14) |
O8ii—Na1—H101 | 104.0 (6) | C5—N2—C4 | 115.98 (15) |
O10—Na1—H101 | 18.5 (5) | C5—N2—Co1 | 103.81 (12) |
O5—Na1—H101 | 83.0 (6) | C4—N2—Co1 | 108.90 (13) |
O2—C1—O1 | 123.23 (19) | C5—N2—H2N | 109.7 (15) |
O2—C1—C2 | 120.69 (18) | C4—N2—H2N | 106.2 (16) |
O1—C1—C2 | 116.04 (17) | Co1—N2—H2N | 112.4 (15) |
N1—C2—C1 | 108.02 (15) | C1—O1—Co1 | 113.93 (13) |
N1—C2—C10iii | 114.61 (16) | C6—O3—Co1 | 112.44 (12) |
C1—C2—C10iii | 112.07 (16) | C6—O4—Na1iv | 144.52 (14) |
N1—C2—H2 | 107.3 | C8—O5—Co1 | 126.31 (13) |
C1—C2—H2 | 107.3 | C8—O5—Na1 | 78.66 (11) |
C10iii—C2—H2 | 107.3 | Co1—O5—Na1 | 148.08 (6) |
N1—C3—C4 | 105.57 (15) | C8—O6—Na1 | 108.23 (12) |
N1—C3—H3A | 110.6 | C9—O7—Co1 | 126.58 (12) |
C4—C3—H3A | 110.6 | C9—O8—Na1v | 143.85 (14) |
N1—C3—H3B | 110.6 | Na1—O9—H91 | 107.0 (17) |
C4—C3—H3B | 110.6 | Na1—O9—H92 | 122.9 (19) |
H3A—C3—H3B | 108.8 | H91—O9—H92 | 111 (2) |
N2—C4—C3 | 109.59 (17) | Na1—O10—H101 | 95.7 (18) |
N2—C4—H4A | 109.8 | Na1—O10—H102 | 112.1 (18) |
C3—C4—H4A | 109.8 | H101—O10—H102 | 106 (3) |
N2—C4—H4B | 109.8 | H111—O11—H112 | 108 (3) |
C3—C4—H4B | 109.8 | H121—O12—H122 | 102 (3) |
H4A—C4—H4B | 108.2 | ||
O2—C1—C2—N1 | −161.41 (17) | N1—Co1—O1—C1 | −14.24 (13) |
O1—C1—C2—N1 | 20.9 (2) | O4—C6—O3—Co1 | 179.19 (16) |
O2—C1—C2—C10iii | −34.2 (2) | C5—C6—O3—Co1 | −3.1 (2) |
O1—C1—C2—C10iii | 148.05 (16) | O5—Co1—O3—C6 | 76.97 (13) |
N1—C3—C4—N2 | −46.74 (19) | N2—Co1—O3—C6 | −18.03 (14) |
N2—C5—C6—O4 | −152.14 (19) | O1—Co1—O3—C6 | 167.66 (13) |
C7—C5—C6—O4 | 89.5 (2) | N1—Co1—O3—C6 | −106.76 (14) |
N2—C5—C6—O3 | 30.1 (2) | O3—C6—O4—Na1iv | 169.60 (14) |
C7—C5—C6—O3 | −88.3 (2) | C5—C6—O4—Na1iv | −7.9 (4) |
N2—C5—C7—C8 | −53.7 (2) | O6—C8—O5—Co1 | −177.17 (13) |
C6—C5—C7—C8 | 63.4 (2) | C7—C8—O5—Co1 | 0.7 (3) |
C5—C7—C8—O6 | −172.07 (17) | O6—C8—O5—Na1 | −19.22 (17) |
C5—C7—C8—O5 | 10.0 (3) | C7—C8—O5—Na1 | 158.64 (18) |
O8—C9—C10—C2iii | −146.6 (2) | O3—Co1—O5—C8 | −64.38 (16) |
O7—C9—C10—C2iii | 33.4 (2) | N2—Co1—O5—C8 | 21.81 (16) |
C1—C2—N1—C3 | −150.78 (16) | O7—Co1—O5—C8 | 117.39 (15) |
C10iii—C2—N1—C3 | 83.5 (2) | O1—Co1—O5—C8 | −153.29 (15) |
C1—C2—N1—Co1 | −30.05 (16) | O3—Co1—O5—Na1 | 159.72 (13) |
C10iii—C2—N1—Co1 | −155.76 (12) | N2—Co1—O5—Na1 | −114.09 (13) |
C4—C3—N1—C2 | 164.59 (16) | O7—Co1—O5—Na1 | −18.51 (13) |
C4—C3—N1—Co1 | 43.47 (17) | O1—Co1—O5—Na1 | 70.80 (13) |
O3—Co1—N1—C2 | −64.06 (11) | O9—Na1—O5—C8 | 112.60 (12) |
N2—Co1—N1—C2 | −150.24 (12) | O4i—Na1—O5—C8 | −161.79 (12) |
O7—Co1—N1—C2 | 114.30 (11) | O6—Na1—O5—C8 | 11.67 (11) |
O1—Co1—N1—C2 | 24.94 (11) | O8ii—Na1—O5—C8 | 23.07 (14) |
O3—Co1—N1—C3 | 62.25 (12) | O10—Na1—O5—C8 | −79.65 (12) |
N2—Co1—N1—C3 | −23.93 (12) | O9—Na1—O5—Co1 | −102.28 (13) |
O7—Co1—N1—C3 | −119.39 (12) | O4i—Na1—O5—Co1 | −16.67 (14) |
O1—Co1—N1—C3 | 151.24 (12) | O6—Na1—O5—Co1 | 156.79 (15) |
C6—C5—N2—C4 | 78.7 (2) | O8ii—Na1—O5—Co1 | 168.18 (11) |
C7—C5—N2—C4 | −162.84 (17) | O10—Na1—O5—Co1 | 65.47 (14) |
C6—C5—N2—Co1 | −40.72 (17) | O5—C8—O6—Na1 | 25.3 (2) |
C7—C5—N2—Co1 | 77.76 (16) | C7—C8—O6—Na1 | −152.67 (13) |
C3—C4—N2—C5 | −88.7 (2) | O9—Na1—O6—C8 | −92.30 (14) |
C3—C4—N2—Co1 | 27.91 (17) | O4i—Na1—O6—C8 | −0.8 (2) |
O5—Co1—N2—C5 | −57.29 (12) | O8ii—Na1—O6—C8 | 175.94 (14) |
O3—Co1—N2—C5 | 32.93 (12) | O10—Na1—O6—C8 | 85.10 (14) |
O7—Co1—N2—C5 | −149.15 (12) | O5—Na1—O6—C8 | −12.52 (12) |
N1—Co1—N2—C5 | 121.86 (12) | O8—C9—O7—Co1 | −14.0 (3) |
O5—Co1—N2—C4 | 178.59 (11) | C10—C9—O7—Co1 | 165.99 (13) |
O3—Co1—N2—C4 | −91.20 (12) | O5—Co1—O7—C9 | −40.90 (16) |
O7—Co1—N2—C4 | 86.72 (12) | N2—Co1—O7—C9 | 54.28 (17) |
O2—C1—O1—Co1 | −178.47 (14) | O1—Co1—O7—C9 | −131.58 (16) |
C2—C1—O1—Co1 | −0.80 (19) | N1—Co1—O7—C9 | 142.85 (17) |
O5—Co1—O1—C1 | 165.23 (12) | O7—C9—O8—Na1v | −123.2 (2) |
O3—Co1—O1—C1 | 74.69 (13) | C10—C9—O8—Na1v | 56.8 (3) |
O7—Co1—O1—C1 | −103.41 (13) |
Symmetry codes: (i) −x+1/2, y+1/2, z; (ii) x+1/2, y, −z+1/2; (iii) −x, −y+1, −z; (iv) −x+1/2, y−1/2, z; (v) x−1/2, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O7iii | 0.84 (2) | 2.21 (2) | 2.830 (2) | 130.6 (18) |
N2—H2N···O6v | 0.82 (2) | 2.16 (2) | 2.809 (2) | 137.0 (18) |
O9—H91···O11 | 0.84 (2) | 1.92 (2) | 2.741 (2) | 166 (2) |
O9—H92···O2vi | 0.80 (3) | 2.08 (3) | 2.853 (2) | 162 (3) |
O10—H101···O8 | 0.83 (2) | 2.18 (3) | 2.972 (2) | 160 (2) |
O10—H102···O2vii | 0.82 (3) | 2.04 (3) | 2.853 (2) | 175 (3) |
O11—H111···O1 | 0.79 (3) | 2.26 (3) | 3.004 (2) | 158 (3) |
O11—H112···O12vi | 0.96 (3) | 1.77 (3) | 2.706 (3) | 164 (2) |
O12—H121···O1 | 0.77 (3) | 2.05 (3) | 2.793 (2) | 161 (3) |
O12—H122···O4i | 0.76 (3) | 2.04 (3) | 2.788 (2) | 167 (3) |
Symmetry codes: (i) −x+1/2, y+1/2, z; (iii) −x, −y+1, −z; (v) x−1/2, y, −z+1/2; (vi) −x+1, −y+1, −z; (vii) −x+1/2, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [CoNa(C10H12N2O8)(H2O)2]·2H2O |
Mr | 442.20 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 100 |
a, b, c (Å) | 10.0207 (2), 15.6475 (2), 20.3837 (4) |
V (Å3) | 3196.14 (10) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 1.17 |
Crystal size (mm) | 0.32 × 0.28 × 0.13 |
Data collection | |
Diffractometer | Bruker SMART APEXII diffractometer |
Absorption correction | Numerical (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.706, 0.863 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11219, 3161, 2549 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.620 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.029, 0.065, 0.97 |
No. of reflections | 3161 |
No. of parameters | 265 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.34, −0.50 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXTL (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg & Putz, 2010), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O7i | 0.84 (2) | 2.21 (2) | 2.830 (2) | 130.6 (18) |
N2—H2N···O6ii | 0.82 (2) | 2.16 (2) | 2.809 (2) | 137.0 (18) |
O9—H91···O11 | 0.84 (2) | 1.92 (2) | 2.741 (2) | 166 (2) |
O9—H92···O2iii | 0.80 (3) | 2.08 (3) | 2.853 (2) | 162 (3) |
O10—H101···O8 | 0.83 (2) | 2.18 (3) | 2.972 (2) | 160 (2) |
O10—H102···O2iv | 0.82 (3) | 2.04 (3) | 2.853 (2) | 175 (3) |
O11—H111···O1 | 0.79 (3) | 2.26 (3) | 3.004 (2) | 158 (3) |
O11—H112···O12iii | 0.96 (3) | 1.77 (3) | 2.706 (3) | 164 (2) |
O12—H121···O1 | 0.77 (3) | 2.05 (3) | 2.793 (2) | 161 (3) |
O12—H122···O4v | 0.76 (3) | 2.04 (3) | 2.788 (2) | 167 (3) |
Symmetry codes: (i) −x, −y+1, −z; (ii) x−1/2, y, −z+1/2; (iii) −x+1, −y+1, −z; (iv) −x+1/2, −y+1, z+1/2; (v) −x+1/2, y+1/2, z. |
Acknowledgements
The authors gratefully acknowledge the support of this work by the Ukrainian National Academy of Sciences.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Ethylenediamine-N,N'-disuccinic acid and its coordination compounds with different 3 d-metals have attracted much interest due to their potential and practical applications in biochemistry. EDDS can be applied for some technical purposes: for the extraction of heavy metals from soils as an efficient biodegradable chelating agents (Tandy et al., 2004; Tandy et al., 2006), in replacement of edta in soil washing and phytoextraction (Vandevivere et al., 2001; Kos & Leštan, 2003; Meers et al. 2005) or for radionuclide decontamination in the pulp and paper-making industry (Jones & Williams, 2001). Biologically active complexes are widely used in plant growing and animal industries (Mazurenko & Trunova 2001; Shadchina et al. 2008). The biodegradable strong transition metal chelant [S,S] stereoisomer of ethylenediamine disuccinate was investigated for its applicability for the washing extraction of heavy metals from soil, sewage sludge, and harbor sediment (Vandevivere et al., 2001).
In the course of our investigations the title compound was prepared and structurally characterized. The asymmetric unit of the title compound is shown in Fig. 1. The CoII ion forms a distorted octahedral [CoN2O4] environment defined by sets of three five-membered (Co1/O1/C1/C2/N1;/Co1/N1/C3/C4/N2; Co1/N2/C5/C6/O3) and a six-membered (Co1/N2/C5/C7/C8/O5) metallocycle. The sixth O donor from a centrosymmetrically related [Co(edds)]- complex ion forms a 12-membered macrocycle, as a result a dimeric unit is produced (Fig. 2). The Co-O, Co-N, Na-O bond lengths are in normal ranges and have a good correlation with literature data (Allen et al., 1987; Pavelčík et al., 1980; Horn et al., 1993). The Co1···Co1(-x, -y+1, -z) distance is 5.265 Å, which excludes the possibility of any interaction between the ions. In the crystal the compound exists as a polymeric structure, in which the monomers are interconnected by Na+ ions (Fig. 2). The Na+ ions are five-coordinate, with a distorted trigonal-bipyramidal coordination geometry formed by oxygen atoms, two of which belong to water molecules and the other three to oxygen atoms of the ligand which do not take part in the coordination of the Coii ion. Intermolecular N—H···O and O—H···O hydrogen bonds in the crystal structure form a three-dimensional supramolecular network which stabilizes the structure (Fig.3, Table 1).