organic compounds
(E)-2-(2-Methylcyclohexylidene)hydrazinecarbothioamide
aPET Centre, Centre for Addiction and Mental Health, and Institute of Medical Science, University of Toronto, 250 College Street, Toronto, Ontario, Canada M5T 1R8, and bDepartment of Chemistry, University of Toronto, 80 St George Street, Toronto, Ontario, Canada M5S 3H6
*Correspondence e-mail: alough@chem.utoronto.ca
In the crystal of the title compound, C8H15N3S, molecules are linked by N—H⋯S hydrogen bonds, forming chains along [10]. An intramolecular N—H⋯N hydrogen bond is also present.
Related literature
The title compound, C8H15N3S, is a key intermediate for the preparation of hydrazinyl-5-arylthiazole-based monoamine oxidase B (MAO-B) inhibitors. For the synthesis of hydrazinyl-5-arylthiazoles and their MAO-B inhibitory activity, see: Chimenti et al. (2008, 2010). For background on our interest in radiolabelled molecules targeting MAO-B, see: Vasdev et al. (2011a,b). For the preparation of 18F-labelled potassium fluoride, see: Vasdev et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: COLLECT (Nonius, 2002); cell DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN; program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811042486/pv2460sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811042486/pv2460Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811042486/pv2460Isup3.cml
Synthesis
The title compound, C8H15N3S, was obtained by stirring equimolar amounts (10 mmol) of racemic 2-methylcyclohexanone and thiosemicarbazide with a catalytic amount of acetic acid (ca 350 µL) in 2-propanol (100 ml) for 16 h at room temperature. A white precipitate resulted and was collected by vacuum filtration and washed with cold 2-propanol (3 x 20 ml). This solid was then dissolved in chloroform (20 ml) and the insoluble unreacted thiosemicarbazide was removed by vacuum filtration. The solvent was removed from the filtrate by rotary evaporation and C8H15N3S was obtained as a white solid in 98% yield. X-ray quality crystals were obtained by slow evaporation of a solution of the title compound in 1:1:2 chloroform/acetonitrile/acetone. m.p. = 420 - 421 K.
Attempted Radiosynthesis
Dry 18F-labeled potassium
fluoride ([K222][18F]; 760 µCi) was prepared as previously described (Vasdev et al., 2009). A solution of 2-(2-cyclohexylidenehydrazinyl)-4-(4-nitrophenyl)thiazole in anhydrous CH3CN (9.5 mM, 1 ml) was added to the glass test tube and the solution turned a dark purple. The reaction was stirred at room temperature for 10 minutes, then an was quenched in HPLC buffer to monitor the progress of the reaction by analytical HPLC. As no reaction occurred, the mixture was then heated to 333 K and 363 K in an oil bath for 10 minutes, respectively, with still no reaction occurring. Analytical HPLC was performed using a perfluorophenyl column (Thermo Scientific Fluophase PFP, 150 x 10 mm, 5 µm) eluted with 70:30 CH3OH:H2O + 0.1 N ammonium formate using a flow of 5 ml min-1. Authentic 2-(2-cyclohexylidenehydrazinyl)-4-(4-fluorophenyl)thiazole (tR = 12.5 min) was used as a standard.A second reaction under microwave heating (60 W) was also attempted using dimethylsulfoxide (DMSO) as the solvent. The reaction again turned dark purple with the addition of the precursor as a DMSO solution (9.5 mM, 1 ml) to the dry [K222][18F] containing glass test tube. After heating to 393 K for 5 minutes with no reaction occurring, the temperature was increased to 453 K for 15 minutes. At this point, there was no precursor remaining intact, as determined by analytical HPLC. Proton NMR spectroscopy revealed that the hydrazinic proton is removed under basic conditions.
H atoms bonded to C atoms were placed in calculated positions with C—H = 0.98 - 1.00Å and were included in the
with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(Cmethyl). H atoms bonded to N atoms were refined independently with isotropic displacement parameters.Data collection: COLLECT (Nonius, 2002); cell
DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR92 (Altomare et al., 1994); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C8H15N3S | Z = 2 |
Mr = 185.29 | F(000) = 200 |
Triclinic, P1 | Dx = 1.255 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.0261 (5) Å | Cell parameters from 5938 reflections |
b = 8.0655 (4) Å | θ = 2.6–27.5° |
c = 10.9129 (9) Å | µ = 0.28 mm−1 |
α = 83.904 (5)° | T = 150 K |
β = 89.386 (4)° | Plate, colourless |
γ = 68.416 (4)° | 0.20 × 0.14 × 0.04 mm |
V = 490.19 (6) Å3 |
Nonius KappaCCD diffractometer | 2184 independent reflections |
Radiation source: fine-focus sealed tube | 1698 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.077 |
Detector resolution: 9 pixels mm-1 | θmax = 27.6°, θmin = 2.7° |
ϕ scans and ω scans with κ offsets | h = −7→7 |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | k = −10→10 |
Tmin = 0.710, Tmax = 1.060 | l = −13→14 |
5938 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.122 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0454P)2 + 0.1232P] where P = (Fo2 + 2Fc2)/3 |
2184 reflections | (Δ/σ)max < 0.001 |
122 parameters | Δρmax = 0.26 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C8H15N3S | γ = 68.416 (4)° |
Mr = 185.29 | V = 490.19 (6) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.0261 (5) Å | Mo Kα radiation |
b = 8.0655 (4) Å | µ = 0.28 mm−1 |
c = 10.9129 (9) Å | T = 150 K |
α = 83.904 (5)° | 0.20 × 0.14 × 0.04 mm |
β = 89.386 (4)° |
Nonius KappaCCD diffractometer | 2184 independent reflections |
Absorption correction: multi-scan (SORTAV; Blessing, 1995) | 1698 reflections with I > 2σ(I) |
Tmin = 0.710, Tmax = 1.060 | Rint = 0.077 |
5938 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.122 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.26 e Å−3 |
2184 reflections | Δρmin = −0.25 e Å−3 |
122 parameters |
Experimental. 1H NMR (CDCl3, 400 MHz) δ p.p.m. 8.83 (br s, 1H), 7.25 (br s, 1H), 6.48 (br s, 1H), 2.66 (m, 1H), 2.29 - 2.40 (m, 1H), 1.84 - 2.00 (m, 3H), 1.75 - 1.83 (m, 1H), 1.41 - 1.66 (m, 2H), 1.23 - 1.36 (m, 1H), 1.10 (d, J= 6.6 Hz, 3H). HRMS (ESI) m/z calcd for C8H16N3S, 186.1059; found 186.1064 (M++H). |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.17188 (9) | 0.22748 (6) | 0.01937 (5) | 0.03606 (19) | |
N1 | 0.5032 (3) | 0.4731 (2) | 0.19337 (16) | 0.0335 (4) | |
H1N | 0.185 (5) | 0.522 (3) | 0.104 (2) | 0.051 (7)* | |
N2 | 0.3306 (3) | 0.4439 (2) | 0.12560 (17) | 0.0336 (4) | |
N3 | 0.6066 (3) | 0.1654 (2) | 0.10779 (19) | 0.0428 (5) | |
H2N | 0.708 (4) | 0.195 (3) | 0.137 (2) | 0.047 (7)* | |
H3N | 0.649 (4) | 0.061 (3) | 0.078 (2) | 0.039 (6)* | |
C1 | 0.4559 (4) | 0.6253 (2) | 0.23460 (19) | 0.0334 (5) | |
C2 | 0.6541 (4) | 0.6475 (3) | 0.3062 (2) | 0.0370 (5) | |
H2A | 0.7074 | 0.7344 | 0.2537 | 0.044* | |
C3 | 0.5603 (4) | 0.7327 (3) | 0.4246 (2) | 0.0437 (5) | |
H3A | 0.5190 | 0.6458 | 0.4822 | 0.052* | |
H3B | 0.6883 | 0.7593 | 0.4646 | 0.052* | |
C4 | 0.3419 (4) | 0.9048 (3) | 0.4007 (2) | 0.0476 (6) | |
H4A | 0.2849 | 0.9524 | 0.4799 | 0.057* | |
H4B | 0.3853 | 0.9959 | 0.3487 | 0.057* | |
C5 | 0.1440 (4) | 0.8698 (3) | 0.3362 (2) | 0.0456 (6) | |
H5A | 0.0066 | 0.9842 | 0.3177 | 0.055* | |
H5B | 0.0899 | 0.7880 | 0.3919 | 0.055* | |
C6 | 0.2269 (4) | 0.7867 (3) | 0.2168 (2) | 0.0407 (5) | |
H6A | 0.1009 | 0.7509 | 0.1837 | 0.049* | |
H6B | 0.2504 | 0.8778 | 0.1553 | 0.049* | |
C7 | 0.8715 (4) | 0.4756 (3) | 0.3314 (2) | 0.0450 (6) | |
H7A | 0.9305 | 0.4286 | 0.2532 | 0.067* | |
H7B | 0.8275 | 0.3866 | 0.3837 | 0.067* | |
H7C | 0.9968 | 0.5004 | 0.3735 | 0.067* | |
C8 | 0.3858 (3) | 0.2802 (2) | 0.08743 (18) | 0.0311 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0358 (3) | 0.0288 (3) | 0.0448 (4) | −0.0112 (2) | −0.0042 (2) | −0.0115 (2) |
N1 | 0.0343 (9) | 0.0373 (9) | 0.0338 (10) | −0.0170 (7) | 0.0000 (8) | −0.0105 (7) |
N2 | 0.0311 (9) | 0.0303 (8) | 0.0405 (11) | −0.0104 (7) | −0.0030 (8) | −0.0120 (7) |
N3 | 0.0352 (10) | 0.0337 (9) | 0.0588 (14) | −0.0073 (8) | −0.0075 (9) | −0.0202 (9) |
C1 | 0.0381 (11) | 0.0348 (10) | 0.0306 (11) | −0.0162 (9) | 0.0041 (9) | −0.0089 (8) |
C2 | 0.0385 (12) | 0.0423 (11) | 0.0371 (12) | −0.0210 (9) | 0.0026 (10) | −0.0116 (9) |
C3 | 0.0464 (13) | 0.0503 (12) | 0.0424 (14) | −0.0240 (10) | 0.0000 (11) | −0.0173 (10) |
C4 | 0.0531 (14) | 0.0452 (12) | 0.0505 (15) | −0.0199 (11) | 0.0035 (12) | −0.0254 (11) |
C5 | 0.0446 (13) | 0.0413 (11) | 0.0513 (15) | −0.0126 (10) | 0.0001 (11) | −0.0190 (10) |
C6 | 0.0478 (13) | 0.0330 (10) | 0.0422 (13) | −0.0137 (9) | −0.0056 (10) | −0.0116 (9) |
C7 | 0.0378 (12) | 0.0528 (13) | 0.0481 (14) | −0.0185 (10) | 0.0013 (10) | −0.0155 (11) |
C8 | 0.0344 (11) | 0.0291 (9) | 0.0309 (11) | −0.0115 (8) | 0.0031 (9) | −0.0091 (8) |
S1—C8 | 1.698 (2) | C3—H3A | 0.9900 |
N1—C1 | 1.284 (2) | C3—H3B | 0.9900 |
N1—N2 | 1.385 (2) | C4—C5 | 1.518 (3) |
N2—C8 | 1.348 (2) | C4—H4A | 0.9900 |
N2—H1N | 0.88 (3) | C4—H4B | 0.9900 |
N3—C8 | 1.317 (3) | C5—C6 | 1.523 (3) |
N3—H2N | 0.81 (3) | C5—H5A | 0.9900 |
N3—H3N | 0.88 (2) | C5—H5B | 0.9900 |
C1—C6 | 1.506 (3) | C6—H6A | 0.9900 |
C1—C2 | 1.508 (3) | C6—H6B | 0.9900 |
C2—C7 | 1.518 (3) | C7—H7A | 0.9800 |
C2—C3 | 1.532 (3) | C7—H7B | 0.9800 |
C2—H2A | 1.0000 | C7—H7C | 0.9800 |
C3—C4 | 1.521 (3) | ||
C1—N1—N2 | 119.69 (16) | C5—C4—H4B | 109.6 |
C8—N2—N1 | 117.61 (16) | C3—C4—H4B | 109.6 |
C8—N2—H1N | 115.7 (16) | H4A—C4—H4B | 108.1 |
N1—N2—H1N | 126.7 (16) | C4—C5—C6 | 111.68 (19) |
C8—N3—H2N | 121.1 (17) | C4—C5—H5A | 109.3 |
C8—N3—H3N | 118.9 (15) | C6—C5—H5A | 109.3 |
H2N—N3—H3N | 119 (2) | C4—C5—H5B | 109.3 |
N1—C1—C6 | 127.45 (18) | C6—C5—H5B | 109.3 |
N1—C1—C2 | 116.52 (17) | H5A—C5—H5B | 107.9 |
C6—C1—C2 | 116.01 (16) | C1—C6—C5 | 112.49 (18) |
C1—C2—C7 | 113.51 (16) | C1—C6—H6A | 109.1 |
C1—C2—C3 | 110.67 (17) | C5—C6—H6A | 109.1 |
C7—C2—C3 | 112.02 (19) | C1—C6—H6B | 109.1 |
C1—C2—H2A | 106.7 | C5—C6—H6B | 109.1 |
C7—C2—H2A | 106.7 | H6A—C6—H6B | 107.8 |
C3—C2—H2A | 106.7 | C2—C7—H7A | 109.5 |
C4—C3—C2 | 112.57 (19) | C2—C7—H7B | 109.5 |
C4—C3—H3A | 109.1 | H7A—C7—H7B | 109.5 |
C2—C3—H3A | 109.1 | C2—C7—H7C | 109.5 |
C4—C3—H3B | 109.1 | H7A—C7—H7C | 109.5 |
C2—C3—H3B | 109.1 | H7B—C7—H7C | 109.5 |
H3A—C3—H3B | 107.8 | N3—C8—N2 | 117.45 (18) |
C5—C4—C3 | 110.46 (16) | N3—C8—S1 | 122.61 (15) |
C5—C4—H4A | 109.6 | N2—C8—S1 | 119.92 (15) |
C3—C4—H4A | 109.6 |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N···S1i | 0.88 (3) | 2.61 (3) | 3.4645 (19) | 162 (2) |
N3—H3N···S1ii | 0.88 (2) | 2.52 (2) | 3.3954 (19) | 170.9 (19) |
N3—H2N···N1 | 0.81 (3) | 2.28 (2) | 2.601 (2) | 104.6 (19) |
Symmetry codes: (i) −x, −y+1, −z; (ii) −x+1, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | C8H15N3S |
Mr | 185.29 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 150 |
a, b, c (Å) | 6.0261 (5), 8.0655 (4), 10.9129 (9) |
α, β, γ (°) | 83.904 (5), 89.386 (4), 68.416 (4) |
V (Å3) | 490.19 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.20 × 0.14 × 0.04 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SORTAV; Blessing, 1995) |
Tmin, Tmax | 0.710, 1.060 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5938, 2184, 1698 |
Rint | 0.077 |
(sin θ/λ)max (Å−1) | 0.651 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.122, 1.05 |
No. of reflections | 2184 |
No. of parameters | 122 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.26, −0.25 |
Computer programs: COLLECT (Nonius, 2002), DENZO-SMN (Otwinowski & Minor, 1997), SIR92 (Altomare et al., 1994), SHELXTL (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N···S1i | 0.88 (3) | 2.61 (3) | 3.4645 (19) | 162 (2) |
N3—H3N···S1ii | 0.88 (2) | 2.52 (2) | 3.3954 (19) | 170.9 (19) |
N3—H2N···N1 | 0.81 (3) | 2.28 (2) | 2.601 (2) | 104.6 (19) |
Symmetry codes: (i) −x, −y+1, −z; (ii) −x+1, −y, −z. |
Acknowledgements
Funding was provided by the Ontario Ministry for Research and Innovation (Early Researcher Award to Dr Neil Vasdev).
References
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(E)-2-(2-Methylcyclohexylidene)hydrazinecarbothioamide is an intermediate towards the preparation of hydrazinyl-5-arylthiazoles which are curerntly under exploration as a new class of inhibitors of the enzyme monoamine oxidase B (Chimenti et al. 2010). Our interest in this class of compounds is to prepare a radiotracer for imaging MAO-B in the central nervous system with positron emission tomography (PET). Chimenti et al. (2010) reported the synthesis of (E)-2-(2-(2-methylcyclohexylidene)hydrazinyl)-5-(4-nitrophenyl)thiazole, and (E)-2-(2-(2-methylcyclohexylidene)hydrazinyl)-5-(4-fluorophenyl)thiazole which demonstrated high affinity for MAO-B (Ki > 10 nM). We have attempted to use the 4-nitrophenyl thiazole derivative as a precursor for radiofluorination with the positron emitting isotope fluorine-18 (t1/2 = 109.7 min) to prepare [18F]-(E)-2-(2-(2- methylcyclohexylidene)hydrazinyl)-5-(4-fluorophenyl)thiazole. Although initial attempts to achieve this goal have not been successful due to degradation of the precursor under basic conditions, we continue to investigate the application of thiazoles as an activating group for aromatic radiofluorination.
The molecular structure of the title compound is shown in Fig. 1. In the crystal, molecules are linked by N—H···S hydrogen bonds to form chains along [110] (see Fig. 2). An intramolecular N—H···N hydrogen bond is also present.