organic compounds
tert-Butyl (2S)-2-{3-[(R)-bis(tert-butoxycarbonyl)amino]-2-oxopiperidin-1-yl}-3-methylbutanoate†
aDepartment of Chemistry, Louisiana State University, Baton Rouge, LA 70803-1804, USA
*Correspondence e-mail: ffroncz@lsu.edu
The title compound, C24H42N2O7, is a chiral lactam-constrained amino acid with a six-membered ring backbone and isopropyl and tert-butyl ester side chains. The conformation of the six-membered ring can be described as a half chair, with two CH2 C atoms lying 0.443 (1) and −0.310 (1) Å out of the best plane of the other four atoms (mean deviation = 0.042 Å). Both N atoms are sp2 hybridized, lying 0.0413 (9) and 0.067 (1) Å out of the planes defined by the three C atoms bonded to them. The was determined, based on of light atoms in Cu Kα radiation.
Related literature
For synthesis and chemical interest, see: Oguz (2003); Oguz et al. (2001). For a similar structure, see: Valle et al. (1989). For parameters, see: Hooft et al. (2008).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2006); cell APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536811043212/pv2462sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811043212/pv2462Isup2.hkl
The synthesis of the title compound is detailed by Oguz (2003), who prepared a suitable single-crystal by recrystallization from hexanes.
Hydrogen atoms were located from difference maps and included in the
in riding mode with C—H distances = 0.98 - 1.00 Å and Uiso(H) = 1.5 Ueq(methyl C) or 1.2 Ueq(non-methyl C). of the Flack (1983) parameter was used to determine the absolute configurations of the two asymmetric centers in the molecule.Data collection: APEX2 (Bruker, 2006); cell
APEX2 (Bruker, 2006); data reduction: APEX2 (Bruker, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. View of the title molecule (50% probability displacement ellipsoids); H atoms are not shown for clarity. |
C24H42N2O7 | F(000) = 1024 |
Mr = 470.6 | Dx = 1.121 Mg m−3 |
Monoclinic, C2 | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: C 2y | Cell parameters from 8306 reflections |
a = 27.282 (3) Å | θ = 3.5–67.8° |
b = 9.4315 (10) Å | µ = 0.67 mm−1 |
c = 11.5884 (10) Å | T = 86 K |
β = 110.729 (1)° | Fragment, colourless |
V = 2788.7 (5) Å3 | 0.35 × 0.25 × 0.20 mm |
Z = 4 |
Bruker Kappa APEXII CCD diffractometer | 4844 independent reflections |
Radiation source: fine-focus sealed tube | 4782 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
ϕ and ω scans | θmax = 68.2°, θmin = 3.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | h = −32→32 |
Tmin = 0.800, Tmax = 0.878 | k = −10→11 |
10823 measured reflections | l = −13→13 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.026 | w = 1/[σ2(Fo2) + (0.0441P)2 + 0.6036P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.071 | (Δ/σ)max = 0.001 |
S = 1.01 | Δρmax = 0.19 e Å−3 |
4844 reflections | Δρmin = −0.12 e Å−3 |
310 parameters | Extinction correction: SHELXS97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
1 restraint | Extinction coefficient: 0.00066 (8) |
0 constraints | Absolute structure: Flack (1983), 2174 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.02 (10) |
Secondary atom site location: difference Fourier map |
C24H42N2O7 | V = 2788.7 (5) Å3 |
Mr = 470.6 | Z = 4 |
Monoclinic, C2 | Cu Kα radiation |
a = 27.282 (3) Å | µ = 0.67 mm−1 |
b = 9.4315 (10) Å | T = 86 K |
c = 11.5884 (10) Å | 0.35 × 0.25 × 0.20 mm |
β = 110.729 (1)° |
Bruker Kappa APEXII CCD diffractometer | 4844 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | 4782 reflections with I > 2σ(I) |
Tmin = 0.800, Tmax = 0.878 | Rint = 0.023 |
10823 measured reflections |
R[F2 > 2σ(F2)] = 0.026 | H-atom parameters constrained |
wR(F2) = 0.071 | Δρmax = 0.19 e Å−3 |
S = 1.01 | Δρmin = −0.12 e Å−3 |
4844 reflections | Absolute structure: Flack (1983), 2174 Friedel pairs |
310 parameters | Absolute structure parameter: −0.02 (10) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.29466 (4) | 0.36747 (13) | 0.72598 (11) | 0.0195 (2) | |
C2 | 0.24099 (4) | 0.41656 (13) | 0.63587 (11) | 0.0194 (2) | |
H2 | 0.2438 | 0.5214 | 0.6267 | 0.023* | |
C3 | 0.22473 (5) | 0.35489 (14) | 0.50640 (11) | 0.0224 (3) | |
H3A | 0.194 | 0.4069 | 0.4504 | 0.027* | |
H3B | 0.2149 | 0.254 | 0.5075 | 0.027* | |
C4 | 0.27044 (5) | 0.36775 (14) | 0.46077 (11) | 0.0225 (3) | |
H4A | 0.26 | 0.3321 | 0.3751 | 0.027* | |
H4B | 0.2809 | 0.4684 | 0.4616 | 0.027* | |
C5 | 0.31600 (5) | 0.28143 (14) | 0.54486 (11) | 0.0221 (3) | |
H5A | 0.307 | 0.1794 | 0.5335 | 0.026* | |
H5B | 0.3471 | 0.2973 | 0.5212 | 0.026* | |
C6 | 0.20105 (4) | 0.26219 (13) | 0.74681 (11) | 0.0191 (2) | |
C7 | 0.18475 (5) | 0.14657 (13) | 0.91793 (11) | 0.0236 (3) | |
C8 | 0.24179 (5) | 0.11115 (18) | 0.98719 (13) | 0.0343 (3) | |
H8A | 0.258 | 0.0784 | 0.9288 | 0.051* | |
H8B | 0.2442 | 0.0363 | 1.0476 | 0.051* | |
H8C | 0.2601 | 0.1959 | 1.03 | 0.051* | |
C9 | 0.15900 (7) | 0.20383 (18) | 1.00423 (15) | 0.0412 (4) | |
H9A | 0.1789 | 0.2857 | 1.049 | 0.062* | |
H9B | 0.1584 | 0.1299 | 1.0632 | 0.062* | |
H9C | 0.123 | 0.233 | 0.9564 | 0.062* | |
C10 | 0.15454 (6) | 0.02203 (16) | 0.84575 (14) | 0.0359 (3) | |
H10A | 0.1191 | 0.0526 | 0.795 | 0.054* | |
H10B | 0.1524 | −0.0522 | 0.9029 | 0.054* | |
H10C | 0.1725 | −0.0153 | 0.7923 | 0.054* | |
C11 | 0.16978 (5) | 0.51181 (13) | 0.69474 (10) | 0.0183 (2) | |
C12 | 0.08595 (4) | 0.57415 (14) | 0.71249 (11) | 0.0208 (2) | |
C13 | 0.10986 (6) | 0.63856 (16) | 0.83951 (13) | 0.0310 (3) | |
H13A | 0.1201 | 0.5629 | 0.9014 | 0.046* | |
H13B | 0.0841 | 0.7004 | 0.8556 | 0.046* | |
H13C | 0.1408 | 0.6942 | 0.8439 | 0.046* | |
C14 | 0.03931 (5) | 0.48195 (15) | 0.70301 (14) | 0.0295 (3) | |
H14A | 0.0269 | 0.4342 | 0.6227 | 0.044* | |
H14B | 0.0112 | 0.5411 | 0.7112 | 0.044* | |
H14C | 0.0497 | 0.4109 | 0.769 | 0.044* | |
C15 | 0.07098 (5) | 0.68538 (16) | 0.61068 (13) | 0.0294 (3) | |
H15A | 0.1005 | 0.7501 | 0.6232 | 0.044* | |
H15B | 0.0406 | 0.7391 | 0.6129 | 0.044* | |
H15C | 0.0622 | 0.6385 | 0.5304 | 0.044* | |
C16 | 0.38183 (5) | 0.27894 (15) | 0.75821 (11) | 0.0241 (3) | |
H16 | 0.3863 | 0.3166 | 0.842 | 0.029* | |
C17 | 0.39093 (5) | 0.11852 (15) | 0.77060 (11) | 0.0243 (3) | |
H17 | 0.3935 | 0.0812 | 0.6922 | 0.029* | |
C18 | 0.44260 (5) | 0.08832 (18) | 0.87695 (12) | 0.0339 (3) | |
H18A | 0.4404 | 0.1243 | 0.9543 | 0.051* | |
H18B | 0.4715 | 0.1355 | 0.8606 | 0.051* | |
H18C | 0.4489 | −0.0142 | 0.8838 | 0.051* | |
C19 | 0.34592 (5) | 0.04375 (15) | 0.79477 (12) | 0.0273 (3) | |
H19A | 0.3531 | −0.0582 | 0.8044 | 0.041* | |
H19B | 0.3132 | 0.06 | 0.7251 | 0.041* | |
H19C | 0.3425 | 0.0815 | 0.8704 | 0.041* | |
C20 | 0.42136 (5) | 0.35571 (15) | 0.71361 (13) | 0.0266 (3) | |
C21 | 0.44367 (6) | 0.59566 (17) | 0.66729 (18) | 0.0416 (4) | |
C22 | 0.42311 (7) | 0.73765 (19) | 0.6920 (3) | 0.0610 (6) | |
H22A | 0.3851 | 0.7418 | 0.6487 | 0.091* | |
H22B | 0.4399 | 0.8141 | 0.6623 | 0.091* | |
H22C | 0.431 | 0.7487 | 0.7808 | 0.091* | |
C23 | 0.42947 (9) | 0.5699 (2) | 0.5302 (2) | 0.0585 (5) | |
H23A | 0.4446 | 0.4798 | 0.5173 | 0.088* | |
H23B | 0.4433 | 0.6473 | 0.4942 | 0.088* | |
H23C | 0.3913 | 0.5662 | 0.4905 | 0.088* | |
C24 | 0.50190 (6) | 0.5826 (2) | 0.7382 (2) | 0.0567 (5) | |
H24A | 0.5086 | 0.5904 | 0.8268 | 0.085* | |
H24B | 0.5205 | 0.6586 | 0.713 | 0.085* | |
H24C | 0.5143 | 0.4904 | 0.7207 | 0.085* | |
N1 | 0.32921 (4) | 0.31854 (11) | 0.67548 (9) | 0.0202 (2) | |
N2 | 0.20095 (4) | 0.39526 (11) | 0.69179 (9) | 0.0193 (2) | |
O1 | 0.30559 (3) | 0.38315 (10) | 0.83680 (8) | 0.0241 (2) | |
O2 | 0.21970 (3) | 0.15970 (9) | 0.71609 (8) | 0.02276 (19) | |
O3 | 0.18130 (4) | 0.27044 (9) | 0.83558 (8) | 0.02354 (19) | |
O4 | 0.18374 (3) | 0.63235 (9) | 0.69062 (8) | 0.02172 (18) | |
O5 | 0.12315 (3) | 0.46991 (9) | 0.69416 (8) | 0.02019 (18) | |
O6 | 0.45332 (4) | 0.29793 (11) | 0.68025 (10) | 0.0334 (2) | |
O7 | 0.41427 (4) | 0.49542 (10) | 0.71647 (10) | 0.0339 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0190 (5) | 0.0172 (6) | 0.0226 (6) | −0.0022 (5) | 0.0079 (5) | −0.0031 (5) |
C2 | 0.0191 (5) | 0.0204 (6) | 0.0220 (6) | 0.0017 (5) | 0.0114 (5) | 0.0025 (5) |
C3 | 0.0210 (6) | 0.0251 (6) | 0.0202 (6) | 0.0024 (5) | 0.0062 (5) | 0.0028 (5) |
C4 | 0.0256 (6) | 0.0246 (6) | 0.0189 (6) | 0.0019 (5) | 0.0099 (5) | 0.0014 (5) |
C5 | 0.0238 (6) | 0.0250 (6) | 0.0201 (6) | 0.0014 (5) | 0.0112 (5) | −0.0030 (5) |
C6 | 0.0170 (5) | 0.0195 (6) | 0.0201 (6) | 0.0002 (4) | 0.0059 (4) | 0.0016 (5) |
C7 | 0.0273 (6) | 0.0211 (6) | 0.0252 (6) | 0.0021 (5) | 0.0130 (5) | 0.0082 (5) |
C8 | 0.0304 (7) | 0.0421 (8) | 0.0278 (7) | 0.0013 (6) | 0.0072 (6) | 0.0126 (6) |
C9 | 0.0626 (10) | 0.0347 (8) | 0.0419 (8) | 0.0146 (7) | 0.0380 (8) | 0.0147 (7) |
C10 | 0.0350 (7) | 0.0340 (8) | 0.0393 (8) | −0.0104 (6) | 0.0140 (6) | 0.0054 (6) |
C11 | 0.0189 (5) | 0.0210 (6) | 0.0154 (5) | 0.0016 (5) | 0.0066 (4) | 0.0016 (4) |
C12 | 0.0190 (6) | 0.0217 (6) | 0.0242 (6) | 0.0050 (5) | 0.0107 (5) | 0.0023 (5) |
C13 | 0.0322 (7) | 0.0346 (7) | 0.0312 (7) | 0.0003 (6) | 0.0175 (6) | −0.0046 (6) |
C14 | 0.0232 (6) | 0.0280 (7) | 0.0417 (8) | 0.0010 (6) | 0.0171 (5) | 0.0017 (6) |
C15 | 0.0244 (6) | 0.0317 (7) | 0.0348 (7) | 0.0088 (6) | 0.0139 (5) | 0.0106 (6) |
C16 | 0.0176 (6) | 0.0314 (7) | 0.0226 (6) | 0.0003 (5) | 0.0064 (5) | −0.0077 (5) |
C17 | 0.0219 (6) | 0.0315 (7) | 0.0194 (6) | 0.0051 (5) | 0.0071 (5) | −0.0030 (5) |
C18 | 0.0242 (6) | 0.0494 (9) | 0.0255 (7) | 0.0091 (6) | 0.0055 (5) | −0.0005 (6) |
C19 | 0.0268 (6) | 0.0316 (7) | 0.0237 (6) | 0.0050 (5) | 0.0093 (5) | 0.0027 (5) |
C20 | 0.0177 (6) | 0.0295 (7) | 0.0300 (6) | −0.0012 (5) | 0.0055 (5) | −0.0103 (5) |
C21 | 0.0267 (7) | 0.0263 (8) | 0.0749 (11) | −0.0062 (6) | 0.0220 (7) | −0.0076 (7) |
C22 | 0.0371 (9) | 0.0299 (9) | 0.1201 (19) | −0.0021 (7) | 0.0331 (11) | −0.0089 (10) |
C23 | 0.0633 (11) | 0.0450 (10) | 0.0737 (13) | −0.0162 (9) | 0.0321 (10) | 0.0036 (10) |
C24 | 0.0276 (8) | 0.0362 (9) | 0.1048 (16) | −0.0080 (7) | 0.0215 (9) | −0.0115 (10) |
N1 | 0.0176 (5) | 0.0245 (5) | 0.0188 (5) | 0.0002 (4) | 0.0067 (4) | −0.0046 (4) |
N2 | 0.0185 (5) | 0.0181 (5) | 0.0239 (5) | 0.0023 (4) | 0.0109 (4) | 0.0029 (4) |
O1 | 0.0227 (4) | 0.0302 (5) | 0.0204 (4) | 0.0020 (4) | 0.0088 (3) | −0.0057 (4) |
O2 | 0.0266 (4) | 0.0188 (4) | 0.0252 (4) | 0.0030 (3) | 0.0122 (3) | 0.0011 (3) |
O3 | 0.0299 (4) | 0.0195 (4) | 0.0266 (4) | 0.0046 (4) | 0.0167 (4) | 0.0051 (4) |
O4 | 0.0231 (4) | 0.0181 (4) | 0.0272 (4) | 0.0004 (3) | 0.0129 (3) | 0.0020 (3) |
O5 | 0.0181 (4) | 0.0183 (4) | 0.0266 (4) | 0.0021 (3) | 0.0110 (3) | 0.0010 (3) |
O6 | 0.0260 (5) | 0.0315 (5) | 0.0491 (6) | −0.0011 (4) | 0.0210 (4) | −0.0096 (4) |
O7 | 0.0236 (5) | 0.0268 (5) | 0.0550 (6) | −0.0036 (4) | 0.0184 (4) | −0.0112 (5) |
C1—O1 | 1.2202 (15) | C13—H13A | 0.98 |
C1—N1 | 1.3545 (16) | C13—H13B | 0.98 |
C1—C2 | 1.5382 (15) | C13—H13C | 0.98 |
C2—N2 | 1.4679 (15) | C14—H14A | 0.98 |
C2—C3 | 1.5215 (17) | C14—H14B | 0.98 |
C2—H2 | 1 | C14—H14C | 0.98 |
C3—C4 | 1.5220 (16) | C15—H15A | 0.98 |
C3—H3A | 0.99 | C15—H15B | 0.98 |
C3—H3B | 0.99 | C15—H15C | 0.98 |
C4—C5 | 1.5165 (17) | C16—N1 | 1.4646 (15) |
C4—H4A | 0.99 | C16—C17 | 1.5317 (19) |
C4—H4B | 0.99 | C16—C20 | 1.5327 (19) |
C5—N1 | 1.4688 (15) | C16—H16 | 1 |
C5—H5A | 0.99 | C17—C19 | 1.5254 (18) |
C5—H5B | 0.99 | C17—C18 | 1.5353 (17) |
C6—O2 | 1.2035 (15) | C17—H17 | 1 |
C6—O3 | 1.3217 (15) | C18—H18A | 0.98 |
C6—N2 | 1.4074 (16) | C18—H18B | 0.98 |
C7—O3 | 1.4902 (14) | C18—H18C | 0.98 |
C7—C10 | 1.507 (2) | C19—H19A | 0.98 |
C7—C9 | 1.5107 (19) | C19—H19B | 0.98 |
C7—C8 | 1.5145 (18) | C19—H19C | 0.98 |
C8—H8A | 0.98 | C20—O6 | 1.2021 (17) |
C8—H8B | 0.98 | C20—O7 | 1.3339 (18) |
C8—H8C | 0.98 | C21—O7 | 1.4785 (19) |
C9—H9A | 0.98 | C21—C24 | 1.513 (2) |
C9—H9B | 0.98 | C21—C23 | 1.515 (3) |
C9—H9C | 0.98 | C21—C22 | 1.518 (2) |
C10—H10A | 0.98 | C22—H22A | 0.98 |
C10—H10B | 0.98 | C22—H22B | 0.98 |
C10—H10C | 0.98 | C22—H22C | 0.98 |
C11—O4 | 1.2052 (15) | C23—H23A | 0.98 |
C11—O5 | 1.3298 (15) | C23—H23B | 0.98 |
C11—N2 | 1.3976 (16) | C23—H23C | 0.98 |
C12—O5 | 1.4813 (14) | C24—H24A | 0.98 |
C12—C13 | 1.5105 (18) | C24—H24B | 0.98 |
C12—C14 | 1.5127 (17) | C24—H24C | 0.98 |
C12—C15 | 1.5224 (17) | ||
O1—C1—N1 | 123.21 (11) | H14A—C14—H14B | 109.5 |
O1—C1—C2 | 119.83 (11) | C12—C14—H14C | 109.5 |
N1—C1—C2 | 116.74 (10) | H14A—C14—H14C | 109.5 |
N2—C2—C3 | 112.35 (10) | H14B—C14—H14C | 109.5 |
N2—C2—C1 | 109.72 (9) | C12—C15—H15A | 109.5 |
C3—C2—C1 | 115.44 (10) | C12—C15—H15B | 109.5 |
N2—C2—H2 | 106.2 | H15A—C15—H15B | 109.5 |
C3—C2—H2 | 106.2 | C12—C15—H15C | 109.5 |
C1—C2—H2 | 106.2 | H15A—C15—H15C | 109.5 |
C2—C3—C4 | 108.87 (10) | H15B—C15—H15C | 109.5 |
C2—C3—H3A | 109.9 | N1—C16—C17 | 113.71 (10) |
C4—C3—H3A | 109.9 | N1—C16—C20 | 107.61 (11) |
C2—C3—H3B | 109.9 | C17—C16—C20 | 112.84 (10) |
C4—C3—H3B | 109.9 | N1—C16—H16 | 107.5 |
H3A—C3—H3B | 108.3 | C17—C16—H16 | 107.5 |
C5—C4—C3 | 108.66 (10) | C20—C16—H16 | 107.5 |
C5—C4—H4A | 110 | C19—C17—C16 | 111.07 (10) |
C3—C4—H4A | 110 | C19—C17—C18 | 109.69 (11) |
C5—C4—H4B | 110 | C16—C17—C18 | 109.32 (11) |
C3—C4—H4B | 110 | C19—C17—H17 | 108.9 |
H4A—C4—H4B | 108.3 | C16—C17—H17 | 108.9 |
N1—C5—C4 | 112.37 (10) | C18—C17—H17 | 108.9 |
N1—C5—H5A | 109.1 | C17—C18—H18A | 109.5 |
C4—C5—H5A | 109.1 | C17—C18—H18B | 109.5 |
N1—C5—H5B | 109.1 | H18A—C18—H18B | 109.5 |
C4—C5—H5B | 109.1 | C17—C18—H18C | 109.5 |
H5A—C5—H5B | 107.9 | H18A—C18—H18C | 109.5 |
O2—C6—O3 | 127.53 (11) | H18B—C18—H18C | 109.5 |
O2—C6—N2 | 121.03 (11) | C17—C19—H19A | 109.5 |
O3—C6—N2 | 111.35 (10) | C17—C19—H19B | 109.5 |
O3—C7—C10 | 110.94 (10) | H19A—C19—H19B | 109.5 |
O3—C7—C9 | 101.83 (10) | C17—C19—H19C | 109.5 |
C10—C7—C9 | 110.80 (12) | H19A—C19—H19C | 109.5 |
O3—C7—C8 | 109.41 (10) | H19B—C19—H19C | 109.5 |
C10—C7—C8 | 112.32 (12) | O6—C20—O7 | 125.73 (14) |
C9—C7—C8 | 111.06 (12) | O6—C20—C16 | 124.84 (13) |
C7—C8—H8A | 109.5 | O7—C20—C16 | 109.43 (11) |
C7—C8—H8B | 109.5 | O7—C21—C24 | 110.31 (15) |
H8A—C8—H8B | 109.5 | O7—C21—C23 | 109.23 (13) |
C7—C8—H8C | 109.5 | C24—C21—C23 | 112.71 (16) |
H8A—C8—H8C | 109.5 | O7—C21—C22 | 101.79 (13) |
H8B—C8—H8C | 109.5 | C24—C21—C22 | 110.88 (14) |
C7—C9—H9A | 109.5 | C23—C21—C22 | 111.37 (18) |
C7—C9—H9B | 109.5 | C21—C22—H22A | 109.5 |
H9A—C9—H9B | 109.5 | C21—C22—H22B | 109.5 |
C7—C9—H9C | 109.5 | H22A—C22—H22B | 109.5 |
H9A—C9—H9C | 109.5 | C21—C22—H22C | 109.5 |
H9B—C9—H9C | 109.5 | H22A—C22—H22C | 109.5 |
C7—C10—H10A | 109.5 | H22B—C22—H22C | 109.5 |
C7—C10—H10B | 109.5 | C21—C23—H23A | 109.5 |
H10A—C10—H10B | 109.5 | C21—C23—H23B | 109.5 |
C7—C10—H10C | 109.5 | H23A—C23—H23B | 109.5 |
H10A—C10—H10C | 109.5 | C21—C23—H23C | 109.5 |
H10B—C10—H10C | 109.5 | H23A—C23—H23C | 109.5 |
O4—C11—O5 | 126.53 (11) | H23B—C23—H23C | 109.5 |
O4—C11—N2 | 122.50 (11) | C21—C24—H24A | 109.5 |
O5—C11—N2 | 110.82 (10) | C21—C24—H24B | 109.5 |
O5—C12—C13 | 108.98 (10) | H24A—C24—H24B | 109.5 |
O5—C12—C14 | 102.08 (10) | C21—C24—H24C | 109.5 |
C13—C12—C14 | 111.34 (11) | H24A—C24—H24C | 109.5 |
O5—C12—C15 | 110.83 (10) | H24B—C24—H24C | 109.5 |
C13—C12—C15 | 112.52 (12) | C1—N1—C16 | 118.35 (10) |
C14—C12—C15 | 110.60 (11) | C1—N1—C5 | 124.89 (10) |
C12—C13—H13A | 109.5 | C16—N1—C5 | 116.10 (10) |
C12—C13—H13B | 109.5 | C11—N2—C6 | 126.44 (10) |
H13A—C13—H13B | 109.5 | C11—N2—C2 | 117.23 (10) |
C12—C13—H13C | 109.5 | C6—N2—C2 | 116.08 (10) |
H13A—C13—H13C | 109.5 | C6—O3—C7 | 120.10 (10) |
H13B—C13—H13C | 109.5 | C11—O5—C12 | 120.31 (9) |
C12—C14—H14A | 109.5 | C20—O7—C21 | 121.25 (11) |
C12—C14—H14B | 109.5 | ||
O1—C1—C2—N2 | −34.52 (15) | O5—C11—N2—C6 | −33.73 (15) |
N1—C1—C2—N2 | 150.65 (10) | O4—C11—N2—C2 | −23.56 (16) |
O1—C1—C2—C3 | −162.67 (11) | O5—C11—N2—C2 | 152.30 (10) |
N1—C1—C2—C3 | 22.50 (16) | O2—C6—N2—C11 | 162.50 (11) |
N2—C2—C3—C4 | −174.17 (10) | O3—C6—N2—C11 | −20.70 (16) |
C1—C2—C3—C4 | −47.33 (14) | O2—C6—N2—C2 | −23.47 (16) |
C2—C3—C4—C5 | 62.18 (13) | O3—C6—N2—C2 | 153.33 (10) |
C3—C4—C5—N1 | −52.90 (14) | C3—C2—N2—C11 | −102.88 (12) |
N1—C16—C17—C19 | −47.91 (14) | C1—C2—N2—C11 | 127.27 (11) |
C20—C16—C17—C19 | −170.83 (10) | C3—C2—N2—C6 | 82.52 (13) |
N1—C16—C17—C18 | −169.09 (10) | C1—C2—N2—C6 | −47.33 (14) |
C20—C16—C17—C18 | 67.99 (14) | O2—C6—O3—C7 | 5.36 (18) |
N1—C16—C20—O6 | −119.62 (14) | N2—C6—O3—C7 | −171.17 (9) |
C17—C16—C20—O6 | 6.64 (18) | C10—C7—O3—C6 | −63.25 (15) |
N1—C16—C20—O7 | 59.70 (13) | C9—C7—O3—C6 | 178.81 (12) |
C17—C16—C20—O7 | −174.04 (10) | C8—C7—O3—C6 | 61.23 (15) |
O1—C1—N1—C16 | 1.70 (18) | O4—C11—O5—C12 | −11.94 (17) |
C2—C1—N1—C16 | 176.34 (11) | N2—C11—O5—C12 | 172.41 (9) |
O1—C1—N1—C5 | 172.01 (12) | C13—C12—O5—C11 | −62.98 (14) |
C2—C1—N1—C5 | −13.36 (18) | C14—C12—O5—C11 | 179.17 (10) |
C17—C16—N1—C1 | 105.82 (13) | C15—C12—O5—C11 | 61.37 (13) |
C20—C16—N1—C1 | −128.44 (12) | O6—C20—O7—C21 | 5.1 (2) |
C17—C16—N1—C5 | −65.34 (14) | C16—C20—O7—C21 | −174.19 (12) |
C20—C16—N1—C5 | 60.40 (14) | C24—C21—O7—C20 | −61.66 (19) |
C4—C5—N1—C1 | 29.46 (17) | C23—C21—O7—C20 | 62.76 (18) |
C4—C5—N1—C16 | −160.04 (11) | C22—C21—O7—C20 | −179.40 (14) |
O4—C11—N2—C6 | 150.41 (12) |
Experimental details
Crystal data | |
Chemical formula | C24H42N2O7 |
Mr | 470.6 |
Crystal system, space group | Monoclinic, C2 |
Temperature (K) | 86 |
a, b, c (Å) | 27.282 (3), 9.4315 (10), 11.5884 (10) |
β (°) | 110.729 (1) |
V (Å3) | 2788.7 (5) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.67 |
Crystal size (mm) | 0.35 × 0.25 × 0.20 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2004) |
Tmin, Tmax | 0.800, 0.878 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10823, 4844, 4782 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.026, 0.071, 1.01 |
No. of reflections | 4844 |
No. of parameters | 310 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.19, −0.12 |
Absolute structure | Flack (1983), 2174 Friedel pairs |
Absolute structure parameter | −0.02 (10) |
Computer programs: APEX2 (Bruker, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
Footnotes
†CAS Registry Number 500222-63-9.
Acknowledgements
We are grateful to Dr Umut Oguz for providing the crystalline sample.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Title compound is a conformationally constrained amino acid analog which was designed as part of a study to understand the factors promoting β-sheet formation in brain-degenerative diseases such as Alzheimer's disease, Creutzfeldt-Jacob disease and bovine spongiform encephalopathy (Oguz et al., 2001).
In the title molecule (Fig. 1), the central six-membered ring adopts a conformation close to the C2 half chair, with the diad axis bisecting the N1–C1 and C3–C4 bonds. Atoms C1, C2, C5 and N1 are coplanar to within a mean deviation 0.042 Å (maximum 0.0588 (10) Å for N1), the other two atoms lying alternately above and below this plane, C3 by -0.310 (1) and C4 by 0.443 (1) Å. The C5—N1—C1—C2 torsion angle, which would be zero for an ideal half chair, is -13.36 (18)°. This conformation is similar to that seen in a similar lactam-restricted analog of Boc-L-Pro-L-Leu-Gly-NH2, which has torsion angle somewhat closer to zero, 5.6 (11)° and smaller mean deviation for these four atoms, 0.014 Å (Valle et al., 1989).
Both N atoms are sp2 hybrids, with N1 lying only 0.067 (1) Å from the plane defined by C1, C5 and C16, and N2 lying 0.0413 (9) Å from the plane defined by C2, C6 and C11.
The absolute configuration based on the Flack (1983) parameter x = -0.02 (10), the Hooft parameter y = -0.05 (5), and the Hooft P2(true) value of 1.000 (Hooft et al., 2008) agrees with that of the starting materials.