organic compounds
(E)-1-(Thiophen-2-yl)-3-(2,4,6-trimethoxyphenyl)prop-2-en-1-one
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand, and cDepartment of Biotechnology, Faculty of Agro-Industry, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
*Correspondence e-mail: hkfun@usm.my
There are two crystallograpically independent molecules in the 16H16O4S, with slightly different conformations. The thienyl ring of one molecule is disordered over two positions, with a refined site-occupancy ratio of 0.713 (5):0.287 (5). The molecules are twisted: the dihedral angle between the thienyl and benzene rings is 9.72 (19)° in the ordered molecule, and 3.8 (4) and 2.1 (8)° for the major and minor components, respectively, in the disordered molecule. In both molecules, all three substituted methoxy groups are coplanar with the benzene ring to which they are attached. In each molecule, a weak intramolecular C—H⋯O interaction generates an S(6) ring motif. In the adjacent molecules are linked into a three-dimensional network by weak C—H⋯O interactions.
of the title heteroaryl chalcone derivative, CRelated literature
For bond-length data, see: Allen et al. (1987). For related literature on hydrogen-bond motifs, see: Bernstein et al. (1995). For related structures, see: Chantrapromma et al. (2009); Fun et al. (2010, 2011); Suwunwong et al. (2009). For background to and applications of see: Go et al. (2005); Liu et al. (2008); Ng et al. (2009); Ni et al. (2004); Suwunwong et al. (2011); Tewtrakul et al. (2003). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536811042930/rz2650sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811042930/rz2650Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811042930/rz2650Isup3.cml
The title compound was synthesized by the condensation of 2,4,6-trimethoxybenzaldehyde (0.40 g, 2 mmol) with 2-acethylthiophene (0.35 ml, 2 mmol) in ethanol (30 ml) in the presence of 30% NaOH (aq) (5 ml). After stirring for 3 h in ice bath at 278 K, the resulting pale-yellow solid was collected by filtration, washed with distilled water, dried in air and purified by recrystallization from acetone. Pale-yellow needle-shaped single crystals of the title compound suitable for X-ray
were recrystallized from acetone–ethanol (1:1 v/v) by slow evaporation of the solvent at room temperature after several days; m.p. 381–382 K.All H atoms were placed in calculated positions, with C—H = 0.93 Å, Uiso = 1.2Ueq(C) for aromatic and methyne C atoms and C—H = 0.96 Å, Uiso = 1.5Ueq(C) for methyl groups. A rotating group model was used for the methyl groups. The highest residual electron density peak is located at 1.65 Å from C3 and the deepest hole is located at 0.29 Å from S1A. The thienyl ring of molecule B is disordered over two sites with refined site occupancies of 0.713 (5) and 0.287 (5). Initially SAME, DELU and SIMU restraints were used. In the final
these restraints were removed. A total of 3389 Friedel pairs were used to determine the absolute structure.Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C16H16O4S | Dx = 1.422 Mg m−3 |
Mr = 304.36 | Melting point = 381–382 K |
Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2n | Cell parameters from 8085 reflections |
a = 22.8482 (10) Å | θ = 1.3–30.0° |
b = 31.2117 (13) Å | µ = 0.24 mm−1 |
c = 3.9876 (2) Å | T = 100 K |
V = 2843.7 (2) Å3 | Needle, pale yellow |
Z = 8 | 0.60 × 0.06 × 0.05 mm |
F(000) = 1280 |
Bruker APEXII CCD area-detector diffractometer | 8085 independent reflections |
Radiation source: sealed tube | 5348 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.065 |
ϕ and ω scans | θmax = 30.0°, θmin = 1.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −27→32 |
Tmin = 0.869, Tmax = 0.988 | k = −43→40 |
20029 measured reflections | l = −5→5 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.066 | H-atom parameters constrained |
wR(F2) = 0.178 | w = 1/[σ2(Fo2) + (0.0951P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max = 0.001 |
8085 reflections | Δρmax = 1.08 e Å−3 |
402 parameters | Δρmin = −0.56 e Å−3 |
1 restraint | Absolute structure: Flack (1983), with 3389 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.09 (11) |
C16H16O4S | V = 2843.7 (2) Å3 |
Mr = 304.36 | Z = 8 |
Orthorhombic, Pna21 | Mo Kα radiation |
a = 22.8482 (10) Å | µ = 0.24 mm−1 |
b = 31.2117 (13) Å | T = 100 K |
c = 3.9876 (2) Å | 0.60 × 0.06 × 0.05 mm |
Bruker APEXII CCD area-detector diffractometer | 8085 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 5348 reflections with I > 2σ(I) |
Tmin = 0.869, Tmax = 0.988 | Rint = 0.065 |
20029 measured reflections |
R[F2 > 2σ(F2)] = 0.066 | H-atom parameters constrained |
wR(F2) = 0.178 | Δρmax = 1.08 e Å−3 |
S = 1.01 | Δρmin = −0.56 e Å−3 |
8085 reflections | Absolute structure: Flack (1983), with 3389 Friedel pairs |
402 parameters | Absolute structure parameter: 0.09 (11) |
1 restraint |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 120.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1A | 0.13970 (4) | 0.41398 (3) | 1.0329 (3) | 0.0270 (2) | |
O1A | 0.21057 (10) | 0.48128 (7) | 0.7262 (8) | 0.0228 (6) | |
O2A | 0.27887 (11) | 0.61480 (7) | 0.4202 (7) | 0.0213 (6) | |
O3A | 0.19621 (10) | 0.75129 (7) | 0.6341 (7) | 0.0206 (6) | |
O4A | 0.09780 (10) | 0.62191 (7) | 0.9862 (7) | 0.0211 (6) | |
C1A | 0.07345 (15) | 0.40255 (11) | 1.2033 (10) | 0.0217 (8) | |
H1A | 0.0622 | 0.3752 | 1.2684 | 0.026* | |
C2A | 0.03841 (16) | 0.43786 (10) | 1.2349 (11) | 0.0241 (8) | |
H2A | 0.0005 | 0.4367 | 1.3198 | 0.029* | |
C3A | 0.06544 (15) | 0.47698 (12) | 1.1249 (10) | 0.0236 (8) | |
H3A | 0.0483 | 0.5040 | 1.1312 | 0.028* | |
C4A | 0.12232 (15) | 0.46779 (10) | 1.0057 (10) | 0.0192 (7) | |
C5A | 0.16654 (15) | 0.49669 (10) | 0.8497 (10) | 0.0198 (7) | |
C6A | 0.15415 (15) | 0.54312 (10) | 0.8687 (10) | 0.0209 (8) | |
H6A | 0.1214 | 0.5529 | 0.9841 | 0.025* | |
C7A | 0.19013 (15) | 0.57103 (10) | 0.7198 (10) | 0.0187 (7) | |
H7A | 0.2213 | 0.5587 | 0.6051 | 0.022* | |
C8A | 0.18848 (15) | 0.61784 (10) | 0.7077 (10) | 0.0166 (7) | |
C9A | 0.23464 (15) | 0.64009 (10) | 0.5441 (10) | 0.0175 (7) | |
C10A | 0.23602 (15) | 0.68428 (10) | 0.5233 (10) | 0.0177 (7) | |
H10A | 0.2669 | 0.6980 | 0.4162 | 0.021* | |
C11A | 0.19052 (15) | 0.70813 (10) | 0.6647 (10) | 0.0170 (7) | |
C12A | 0.14394 (15) | 0.68798 (10) | 0.8199 (10) | 0.0190 (7) | |
H12A | 0.1135 | 0.7040 | 0.9108 | 0.023* | |
C13A | 0.14324 (14) | 0.64351 (10) | 0.8385 (10) | 0.0185 (7) | |
C14A | 0.32476 (14) | 0.63633 (10) | 0.2398 (10) | 0.0190 (7) | |
H14A | 0.3511 | 0.6155 | 0.1470 | 0.029* | |
H14B | 0.3458 | 0.6548 | 0.3900 | 0.029* | |
H14C | 0.3080 | 0.6531 | 0.0619 | 0.029* | |
C15A | 0.15164 (15) | 0.77720 (10) | 0.7938 (11) | 0.0208 (8) | |
H15A | 0.1602 | 0.8070 | 0.7584 | 0.031* | |
H15B | 0.1511 | 0.7713 | 1.0300 | 0.031* | |
H15C | 0.1141 | 0.7705 | 0.6989 | 0.031* | |
C16A | 0.05059 (16) | 0.64661 (11) | 1.1205 (11) | 0.0232 (8) | |
H16A | 0.0221 | 0.6278 | 1.2182 | 0.035* | |
H16B | 0.0327 | 0.6629 | 0.9441 | 0.035* | |
H16C | 0.0653 | 0.6657 | 1.2892 | 0.035* | |
S1B | 0.42377 (10) | 0.79935 (8) | 1.2577 (7) | 0.0198 (5) | 0.713 (5) |
O1B | 0.52996 (11) | 0.74766 (7) | 1.3193 (8) | 0.0283 (7) | |
O2B | 0.65708 (9) | 0.63419 (7) | 1.2581 (7) | 0.0199 (6) | |
O3B | 0.62447 (10) | 0.49871 (7) | 0.7051 (7) | 0.0192 (5) | |
O4B | 0.47249 (10) | 0.60034 (7) | 0.8092 (7) | 0.0194 (5) | |
C1B | 0.3535 (4) | 0.8012 (3) | 1.105 (2) | 0.0191 (18) | 0.713 (5) |
H1B | 0.3290 | 0.8248 | 1.1252 | 0.023* | 0.713 (5) |
C2B | 0.3376 (4) | 0.7629 (3) | 0.947 (3) | 0.027 (2) | 0.713 (5) |
H2B | 0.3018 | 0.7578 | 0.8433 | 0.032* | 0.713 (5) |
C3B | 0.3838 (5) | 0.7331 (4) | 0.968 (3) | 0.032 (3) | 0.713 (5) |
H3B | 0.3804 | 0.7050 | 0.8923 | 0.038* | 0.713 (5) |
S1X | 0.3779 (3) | 0.7288 (2) | 0.9029 (17) | 0.0168 (13)* | 0.287 (5) |
C1X | 0.3356 (11) | 0.7722 (7) | 0.978 (7) | 0.013 (5)* | 0.287 (5) |
H1BX | 0.2977 | 0.7753 | 0.8964 | 0.015* | 0.287 (5) |
C2X | 0.3631 (11) | 0.8023 (9) | 1.170 (6) | 0.018 (6)* | 0.287 (5) |
H2BX | 0.3451 | 0.8268 | 1.2552 | 0.022* | 0.287 (5) |
C3X | 0.4244 (12) | 0.7909 (7) | 1.225 (7) | 0.014 (6)* | 0.287 (5) |
H3BX | 0.4524 | 0.8086 | 1.3225 | 0.017* | 0.287 (5) |
C4B | 0.43447 (15) | 0.74896 (10) | 1.1089 (10) | 0.0189 (7) | |
C5B | 0.49125 (15) | 0.72746 (10) | 1.1768 (10) | 0.0195 (8) | |
C6B | 0.49764 (15) | 0.68308 (10) | 1.0567 (11) | 0.0213 (8) | |
H6B | 0.4682 | 0.6704 | 0.9301 | 0.026* | |
C7B | 0.54678 (15) | 0.66094 (10) | 1.1323 (10) | 0.0200 (8) | |
H7B | 0.5731 | 0.6754 | 1.2698 | 0.024* | |
C8B | 0.56499 (15) | 0.61804 (9) | 1.0324 (10) | 0.0175 (7) | |
C9B | 0.62300 (16) | 0.60488 (10) | 1.0981 (10) | 0.0188 (7) | |
C10B | 0.64515 (15) | 0.56527 (10) | 0.9991 (11) | 0.0192 (7) | |
H10B | 0.6836 | 0.5575 | 1.0465 | 0.023* | |
C11B | 0.60766 (15) | 0.53768 (10) | 0.8260 (10) | 0.0182 (7) | |
C12B | 0.54957 (14) | 0.54812 (10) | 0.7577 (10) | 0.0176 (7) | |
H12B | 0.5253 | 0.5291 | 0.6446 | 0.021* | |
C13B | 0.52869 (15) | 0.58828 (11) | 0.8645 (10) | 0.0184 (7) | |
C14B | 0.71693 (15) | 0.62351 (11) | 1.3201 (11) | 0.0239 (8) | |
H14D | 0.7362 | 0.6474 | 1.4246 | 0.036* | |
H14E | 0.7360 | 0.6169 | 1.1117 | 0.036* | |
H14F | 0.7188 | 0.5991 | 1.4657 | 0.036* | |
C15B | 0.68437 (15) | 0.48626 (11) | 0.7563 (12) | 0.0270 (9) | |
H15D | 0.6916 | 0.4596 | 0.6443 | 0.040* | |
H15E | 0.6917 | 0.4830 | 0.9920 | 0.040* | |
H15F | 0.7098 | 0.5079 | 0.6669 | 0.040* | |
C16B | 0.43513 (15) | 0.57035 (11) | 0.6405 (10) | 0.0209 (8) | |
H16D | 0.3961 | 0.5817 | 0.6297 | 0.031* | |
H16E | 0.4348 | 0.5438 | 0.7615 | 0.031* | |
H16F | 0.4495 | 0.5655 | 0.4174 | 0.031* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1A | 0.0279 (5) | 0.0170 (4) | 0.0359 (6) | −0.0005 (4) | 0.0025 (5) | 0.0010 (4) |
O1A | 0.0172 (11) | 0.0159 (11) | 0.0354 (17) | 0.0015 (9) | 0.0028 (12) | −0.0011 (11) |
O2A | 0.0188 (12) | 0.0160 (11) | 0.0290 (15) | 0.0019 (9) | 0.0044 (11) | 0.0041 (10) |
O3A | 0.0194 (12) | 0.0099 (10) | 0.0326 (16) | 0.0006 (9) | 0.0018 (11) | 0.0029 (10) |
O4A | 0.0174 (12) | 0.0135 (11) | 0.0324 (16) | −0.0022 (9) | 0.0064 (12) | −0.0005 (11) |
C1A | 0.0233 (17) | 0.0186 (16) | 0.023 (2) | −0.0046 (14) | 0.0012 (16) | 0.0030 (14) |
C2A | 0.0229 (17) | 0.0171 (16) | 0.032 (2) | −0.0014 (13) | 0.0067 (18) | 0.0011 (16) |
C3A | 0.0213 (18) | 0.0237 (17) | 0.026 (2) | −0.0096 (14) | 0.0046 (16) | 0.0041 (15) |
C4A | 0.0231 (17) | 0.0125 (14) | 0.0219 (19) | −0.0005 (12) | −0.0008 (16) | −0.0015 (14) |
C5A | 0.0195 (17) | 0.0135 (15) | 0.026 (2) | 0.0001 (12) | −0.0029 (16) | −0.0021 (14) |
C6A | 0.0208 (17) | 0.0131 (15) | 0.029 (2) | 0.0009 (12) | 0.0005 (16) | −0.0023 (14) |
C7A | 0.0206 (16) | 0.0141 (14) | 0.0214 (19) | 0.0022 (12) | 0.0010 (15) | 0.0019 (15) |
C8A | 0.0159 (15) | 0.0132 (14) | 0.0207 (19) | −0.0015 (12) | −0.0011 (14) | −0.0012 (13) |
C9A | 0.0201 (16) | 0.0141 (14) | 0.0181 (18) | 0.0018 (12) | −0.0025 (15) | 0.0027 (14) |
C10A | 0.0186 (16) | 0.0145 (14) | 0.0199 (18) | −0.0024 (12) | −0.0009 (15) | 0.0019 (14) |
C11A | 0.0148 (15) | 0.0098 (14) | 0.026 (2) | 0.0010 (12) | −0.0032 (14) | 0.0013 (13) |
C12A | 0.0163 (15) | 0.0144 (15) | 0.026 (2) | 0.0043 (12) | −0.0027 (15) | 0.0001 (14) |
C13A | 0.0123 (15) | 0.0177 (15) | 0.026 (2) | −0.0050 (12) | −0.0013 (14) | 0.0003 (14) |
C14A | 0.0170 (16) | 0.0170 (15) | 0.023 (2) | 0.0005 (12) | 0.0005 (16) | 0.0023 (15) |
C15A | 0.0229 (17) | 0.0099 (14) | 0.030 (2) | 0.0017 (12) | −0.0045 (16) | 0.0019 (15) |
C16A | 0.0217 (18) | 0.0180 (16) | 0.030 (2) | −0.0017 (13) | 0.0027 (16) | −0.0041 (15) |
S1B | 0.0189 (8) | 0.0084 (8) | 0.0322 (10) | 0.0019 (7) | 0.0018 (7) | −0.0026 (8) |
O1B | 0.0207 (12) | 0.0134 (11) | 0.051 (2) | 0.0005 (9) | −0.0075 (14) | −0.0025 (12) |
O2B | 0.0140 (11) | 0.0120 (10) | 0.0339 (16) | −0.0022 (8) | −0.0061 (12) | −0.0020 (11) |
O3B | 0.0193 (12) | 0.0106 (10) | 0.0276 (15) | 0.0017 (8) | −0.0013 (11) | 0.0009 (10) |
O4B | 0.0166 (11) | 0.0112 (10) | 0.0304 (16) | −0.0005 (8) | −0.0018 (11) | −0.0001 (10) |
C1B | 0.016 (4) | 0.020 (3) | 0.022 (5) | 0.005 (2) | −0.004 (3) | 0.005 (3) |
C2B | 0.027 (4) | 0.020 (4) | 0.033 (5) | −0.004 (3) | 0.003 (3) | −0.008 (4) |
C3B | 0.044 (5) | 0.021 (4) | 0.031 (6) | 0.004 (3) | −0.007 (4) | 0.001 (4) |
C4B | 0.0195 (17) | 0.0149 (15) | 0.022 (2) | −0.0038 (13) | 0.0001 (15) | 0.0014 (14) |
C5B | 0.0176 (16) | 0.0120 (15) | 0.029 (2) | −0.0003 (13) | 0.0051 (15) | 0.0019 (13) |
C6B | 0.0210 (17) | 0.0118 (14) | 0.031 (2) | −0.0005 (12) | −0.0013 (17) | −0.0014 (16) |
C7B | 0.0179 (16) | 0.0152 (15) | 0.027 (2) | −0.0043 (13) | −0.0013 (15) | −0.0005 (14) |
C8B | 0.0196 (16) | 0.0113 (13) | 0.0215 (18) | −0.0004 (12) | 0.0031 (15) | −0.0009 (14) |
C9B | 0.0216 (17) | 0.0143 (15) | 0.020 (2) | −0.0038 (13) | 0.0010 (15) | 0.0039 (13) |
C10B | 0.0184 (16) | 0.0136 (15) | 0.026 (2) | −0.0001 (12) | 0.0005 (16) | 0.0022 (15) |
C11B | 0.0218 (17) | 0.0103 (14) | 0.022 (2) | −0.0003 (12) | 0.0023 (15) | 0.0003 (13) |
C12B | 0.0196 (15) | 0.0103 (13) | 0.0229 (19) | −0.0015 (12) | −0.0013 (16) | 0.0023 (14) |
C13B | 0.0198 (17) | 0.0169 (15) | 0.0184 (18) | −0.0013 (13) | 0.0021 (15) | −0.0001 (14) |
C14B | 0.0178 (16) | 0.0197 (16) | 0.034 (2) | −0.0041 (13) | −0.0060 (17) | 0.0000 (16) |
C15B | 0.0227 (18) | 0.0125 (15) | 0.046 (3) | 0.0051 (13) | −0.0004 (19) | 0.0013 (18) |
C16B | 0.0190 (17) | 0.0185 (16) | 0.025 (2) | −0.0040 (13) | −0.0026 (15) | 0.0000 (14) |
S1A—C1A | 1.697 (4) | O2B—C14B | 1.429 (4) |
S1A—C4A | 1.729 (3) | O3B—C11B | 1.364 (4) |
O1A—C5A | 1.219 (4) | O3B—C15B | 1.437 (4) |
O2A—C9A | 1.374 (4) | O4B—C13B | 1.356 (4) |
O2A—C14A | 1.438 (4) | O4B—C16B | 1.434 (4) |
O3A—C11A | 1.359 (4) | C1B—C2B | 1.399 (13) |
O3A—C15A | 1.448 (4) | C1B—H1B | 0.9300 |
O4A—C13A | 1.371 (4) | C2B—C3B | 1.408 (15) |
O4A—C16A | 1.430 (4) | C2B—H2B | 0.9300 |
C1A—C2A | 1.368 (5) | C3B—C4B | 1.380 (12) |
C1A—H1A | 0.9300 | C3B—H3B | 0.9300 |
C2A—C3A | 1.437 (5) | S1X—C4B | 1.657 (7) |
C2A—H2A | 0.9300 | S1X—C1X | 1.69 (2) |
C3A—C4A | 1.413 (5) | C1X—C2X | 1.37 (3) |
C3A—H3A | 0.9300 | C1X—H1BX | 0.9300 |
C4A—C5A | 1.491 (5) | C2X—C3X | 1.46 (3) |
C5A—C6A | 1.478 (4) | C2X—H2BX | 0.9300 |
C6A—C7A | 1.337 (5) | C3X—C4B | 1.41 (2) |
C6A—H6A | 0.9300 | C3X—H3BX | 0.9300 |
C7A—C8A | 1.462 (4) | C4B—C5B | 1.485 (5) |
C7A—H7A | 0.9300 | C5B—C6B | 1.473 (5) |
C8A—C13A | 1.408 (5) | C6B—C7B | 1.353 (5) |
C8A—C9A | 1.421 (5) | C6B—H6B | 0.9300 |
C9A—C10A | 1.382 (4) | C7B—C8B | 1.458 (4) |
C10A—C11A | 1.397 (5) | C7B—H7B | 0.9300 |
C10A—H10A | 0.9300 | C8B—C9B | 1.412 (5) |
C11A—C12A | 1.383 (5) | C8B—C13B | 1.414 (5) |
C12A—C13A | 1.390 (4) | C9B—C10B | 1.393 (5) |
C12A—H12A | 0.9300 | C10B—C11B | 1.397 (5) |
C14A—H14A | 0.9600 | C10B—H10B | 0.9300 |
C14A—H14B | 0.9600 | C11B—C12B | 1.394 (5) |
C14A—H14C | 0.9600 | C12B—C13B | 1.407 (5) |
C15A—H15A | 0.9600 | C12B—H12B | 0.9300 |
C15A—H15B | 0.9600 | C14B—H14D | 0.9600 |
C15A—H15C | 0.9600 | C14B—H14E | 0.9600 |
C16A—H16A | 0.9600 | C14B—H14F | 0.9600 |
C16A—H16B | 0.9600 | C15B—H15D | 0.9600 |
C16A—H16C | 0.9600 | C15B—H15E | 0.9600 |
S1B—C4B | 1.699 (4) | C15B—H15F | 0.9600 |
S1B—C1B | 1.717 (10) | C16B—H16D | 0.9600 |
O1B—C5B | 1.226 (4) | C16B—H16E | 0.9600 |
O2B—C9B | 1.360 (4) | C16B—H16F | 0.9600 |
C1A—S1A—C4A | 91.40 (17) | C1B—C2B—H2B | 125.0 |
C9A—O2A—C14A | 116.6 (3) | C3B—C2B—H2B | 125.0 |
C11A—O3A—C15A | 116.5 (3) | C4B—C3B—C2B | 114.6 (9) |
C13A—O4A—C16A | 117.8 (3) | C4B—C3B—H3B | 122.7 |
C2A—C1A—S1A | 112.9 (3) | C2B—C3B—H3B | 122.7 |
C2A—C1A—H1A | 123.5 | C4B—S1X—C1X | 93.0 (9) |
S1A—C1A—H1A | 123.5 | C2X—C1X—S1X | 113 (2) |
C1A—C2A—C3A | 113.9 (3) | C2X—C1X—H1BX | 123.6 |
C1A—C2A—H2A | 123.1 | S1X—C1X—H1BX | 123.6 |
C3A—C2A—H2A | 123.1 | C1X—C2X—C3X | 111 (2) |
C4A—C3A—C2A | 109.0 (3) | C1X—C2X—H2BX | 124.6 |
C4A—C3A—H3A | 125.5 | C3X—C2X—H2BX | 124.6 |
C2A—C3A—H3A | 125.5 | C4B—C3X—C2X | 110 (2) |
C3A—C4A—C5A | 129.9 (3) | C4B—C3X—H3BX | 125.2 |
C3A—C4A—S1A | 112.8 (3) | C2X—C3X—H3BX | 125.2 |
C5A—C4A—S1A | 117.3 (3) | C3B—C4B—C3X | 109.3 (12) |
O1A—C5A—C6A | 124.4 (3) | C3B—C4B—C5B | 130.2 (6) |
O1A—C5A—C4A | 119.3 (3) | C3X—C4B—C5B | 120.2 (12) |
C6A—C5A—C4A | 116.2 (3) | C3X—C4B—S1X | 112.9 (12) |
C7A—C6A—C5A | 119.9 (3) | C5B—C4B—S1X | 126.9 (4) |
C7A—C6A—H6A | 120.1 | C3B—C4B—S1B | 110.7 (5) |
C5A—C6A—H6A | 120.1 | C5B—C4B—S1B | 118.7 (3) |
C6A—C7A—C8A | 130.5 (3) | S1X—C4B—S1B | 114.4 (3) |
C6A—C7A—H7A | 114.7 | O1B—C5B—C6B | 124.3 (3) |
C8A—C7A—H7A | 114.7 | O1B—C5B—C4B | 118.8 (3) |
C13A—C8A—C9A | 115.9 (3) | C6B—C5B—C4B | 116.9 (3) |
C13A—C8A—C7A | 125.1 (3) | C7B—C6B—C5B | 119.4 (3) |
C9A—C8A—C7A | 119.0 (3) | C7B—C6B—H6B | 120.3 |
O2A—C9A—C10A | 122.3 (3) | C5B—C6B—H6B | 120.3 |
O2A—C9A—C8A | 115.5 (3) | C6B—C7B—C8B | 130.2 (3) |
C10A—C9A—C8A | 122.1 (3) | C6B—C7B—H7B | 114.9 |
C9A—C10A—C11A | 119.4 (3) | C8B—C7B—H7B | 114.9 |
C9A—C10A—H10A | 120.3 | C9B—C8B—C13B | 116.6 (3) |
C11A—C10A—H10A | 120.3 | C9B—C8B—C7B | 119.0 (3) |
O3A—C11A—C12A | 124.4 (3) | C13B—C8B—C7B | 124.4 (3) |
O3A—C11A—C10A | 114.9 (3) | O2B—C9B—C10B | 121.5 (3) |
C12A—C11A—C10A | 120.7 (3) | O2B—C9B—C8B | 115.4 (3) |
C11A—C12A—C13A | 119.1 (3) | C10B—C9B—C8B | 123.1 (3) |
C11A—C12A—H12A | 120.4 | C9B—C10B—C11B | 117.7 (3) |
C13A—C12A—H12A | 120.4 | C9B—C10B—H10B | 121.2 |
O4A—C13A—C12A | 121.5 (3) | C11B—C10B—H10B | 121.2 |
O4A—C13A—C8A | 115.8 (3) | O3B—C11B—C12B | 114.1 (3) |
C12A—C13A—C8A | 122.7 (3) | O3B—C11B—C10B | 123.5 (3) |
O2A—C14A—H14A | 109.5 | C12B—C11B—C10B | 122.4 (3) |
O2A—C14A—H14B | 109.5 | C11B—C12B—C13B | 118.2 (3) |
H14A—C14A—H14B | 109.5 | C11B—C12B—H12B | 120.9 |
O2A—C14A—H14C | 109.5 | C13B—C12B—H12B | 120.9 |
H14A—C14A—H14C | 109.5 | O4B—C13B—C12B | 121.3 (3) |
H14B—C14A—H14C | 109.5 | O4B—C13B—C8B | 116.7 (3) |
O3A—C15A—H15A | 109.5 | C12B—C13B—C8B | 122.0 (3) |
O3A—C15A—H15B | 109.5 | O2B—C14B—H14D | 109.5 |
H15A—C15A—H15B | 109.5 | O2B—C14B—H14E | 109.5 |
O3A—C15A—H15C | 109.5 | H14D—C14B—H14E | 109.5 |
H15A—C15A—H15C | 109.5 | O2B—C14B—H14F | 109.5 |
H15B—C15A—H15C | 109.5 | H14D—C14B—H14F | 109.5 |
O4A—C16A—H16A | 109.5 | H14E—C14B—H14F | 109.5 |
O4A—C16A—H16B | 109.5 | O3B—C15B—H15D | 109.5 |
H16A—C16A—H16B | 109.5 | O3B—C15B—H15E | 109.5 |
O4A—C16A—H16C | 109.5 | H15D—C15B—H15E | 109.5 |
H16A—C16A—H16C | 109.5 | O3B—C15B—H15F | 109.5 |
H16B—C16A—H16C | 109.5 | H15D—C15B—H15F | 109.5 |
C4B—S1B—C1B | 92.4 (4) | H15E—C15B—H15F | 109.5 |
C9B—O2B—C14B | 118.2 (3) | O4B—C16B—H16D | 109.5 |
C11B—O3B—C15B | 117.3 (3) | O4B—C16B—H16E | 109.5 |
C13B—O4B—C16B | 117.3 (3) | H16D—C16B—H16E | 109.5 |
C2B—C1B—S1B | 112.0 (7) | O4B—C16B—H16F | 109.5 |
C2B—C1B—H1B | 124.0 | H16D—C16B—H16F | 109.5 |
S1B—C1B—H1B | 124.0 | H16E—C16B—H16F | 109.5 |
C1B—C2B—C3B | 110.0 (10) | ||
C4A—S1A—C1A—C2A | 1.0 (3) | C2B—C3B—C4B—S1B | 6.2 (11) |
S1A—C1A—C2A—C3A | −1.3 (5) | C2X—C3X—C4B—C3B | 3 (2) |
C1A—C2A—C3A—C4A | 0.9 (5) | C2X—C3X—C4B—C5B | −171.8 (15) |
C2A—C3A—C4A—C5A | 176.5 (4) | C2X—C3X—C4B—S1X | 8 (2) |
C2A—C3A—C4A—S1A | −0.2 (5) | C1X—S1X—C4B—C3B | 51 (7) |
C1A—S1A—C4A—C3A | −0.5 (3) | C1X—S1X—C4B—C3X | −3.7 (16) |
C1A—S1A—C4A—C5A | −177.6 (3) | C1X—S1X—C4B—C5B | 176.0 (10) |
C3A—C4A—C5A—O1A | −171.1 (4) | C1X—S1X—C4B—S1B | −3.0 (10) |
S1A—C4A—C5A—O1A | 5.4 (5) | C1B—S1B—C4B—C3B | −4.2 (7) |
C3A—C4A—C5A—C6A | 11.1 (6) | C1B—S1B—C4B—C5B | −178.0 (4) |
S1A—C4A—C5A—C6A | −172.3 (3) | C1B—S1B—C4B—S1X | 1.1 (5) |
O1A—C5A—C6A—C7A | 5.8 (6) | C3B—C4B—C5B—O1B | −176.9 (7) |
C4A—C5A—C6A—C7A | −176.6 (4) | C3X—C4B—C5B—O1B | −3.9 (14) |
C5A—C6A—C7A—C8A | −178.5 (4) | S1X—C4B—C5B—O1B | 176.4 (5) |
C6A—C7A—C8A—C13A | −5.4 (7) | S1B—C4B—C5B—O1B | −4.6 (5) |
C6A—C7A—C8A—C9A | 176.6 (4) | C3B—C4B—C5B—C6B | 4.9 (9) |
C14A—O2A—C9A—C10A | −5.3 (5) | C3X—C4B—C5B—C6B | 177.9 (13) |
C14A—O2A—C9A—C8A | 177.2 (3) | S1X—C4B—C5B—C6B | −1.7 (6) |
C13A—C8A—C9A—O2A | 179.4 (3) | S1B—C4B—C5B—C6B | 177.3 (3) |
C7A—C8A—C9A—O2A | −2.4 (5) | O1B—C5B—C6B—C7B | 6.6 (6) |
C13A—C8A—C9A—C10A | 1.9 (5) | C4B—C5B—C6B—C7B | −175.3 (4) |
C7A—C8A—C9A—C10A | −179.9 (4) | C5B—C6B—C7B—C8B | −176.7 (4) |
O2A—C9A—C10A—C11A | −177.8 (4) | C6B—C7B—C8B—C9B | 169.3 (4) |
C8A—C9A—C10A—C11A | −0.5 (6) | C6B—C7B—C8B—C13B | −9.2 (7) |
C15A—O3A—C11A—C12A | 3.7 (5) | C14B—O2B—C9B—C10B | 0.6 (5) |
C15A—O3A—C11A—C10A | −176.6 (3) | C14B—O2B—C9B—C8B | −177.6 (3) |
C9A—C10A—C11A—O3A | 179.4 (3) | C13B—C8B—C9B—O2B | 179.6 (3) |
C9A—C10A—C11A—C12A | −1.0 (6) | C7B—C8B—C9B—O2B | 1.0 (5) |
O3A—C11A—C12A—C13A | −179.4 (3) | C13B—C8B—C9B—C10B | 1.5 (6) |
C10A—C11A—C12A—C13A | 1.0 (6) | C7B—C8B—C9B—C10B | −177.1 (4) |
C16A—O4A—C13A—C12A | 0.3 (5) | O2B—C9B—C10B—C11B | −177.9 (3) |
C16A—O4A—C13A—C8A | −179.5 (3) | C8B—C9B—C10B—C11B | 0.2 (6) |
C11A—C12A—C13A—O4A | −179.2 (4) | C15B—O3B—C11B—C12B | 178.0 (3) |
C11A—C12A—C13A—C8A | 0.6 (6) | C15B—O3B—C11B—C10B | −1.0 (5) |
C9A—C8A—C13A—O4A | 177.9 (3) | C9B—C10B—C11B—O3B | 177.6 (3) |
C7A—C8A—C13A—O4A | −0.2 (6) | C9B—C10B—C11B—C12B | −1.4 (6) |
C9A—C8A—C13A—C12A | −1.9 (5) | O3B—C11B—C12B—C13B | −178.2 (3) |
C7A—C8A—C13A—C12A | −180.0 (4) | C10B—C11B—C12B—C13B | 0.9 (6) |
C4B—S1B—C1B—C2B | 1.4 (8) | C16B—O4B—C13B—C12B | 0.6 (5) |
S1B—C1B—C2B—C3B | 1.8 (12) | C16B—O4B—C13B—C8B | −179.7 (3) |
C1B—C2B—C3B—C4B | −5.1 (14) | C11B—C12B—C13B—O4B | −179.4 (3) |
C4B—S1X—C1X—C2X | −2 (2) | C11B—C12B—C13B—C8B | 0.9 (6) |
S1X—C1X—C2X—C3X | 7 (3) | C9B—C8B—C13B—O4B | 178.2 (3) |
C1X—C2X—C3X—C4B | −9 (3) | C7B—C8B—C13B—O4B | −3.2 (6) |
C2B—C3B—C4B—C3X | 5.4 (16) | C9B—C8B—C13B—C12B | −2.1 (6) |
C2B—C3B—C4B—C5B | 179.0 (7) | C7B—C8B—C13B—C12B | 176.5 (4) |
C2B—C3B—C4B—S1X | −121 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
C2B—H2B···O3A | 0.93 | 2.56 | 3.482 (10) | 171 |
C6A—H6A···O4A | 0.93 | 2.22 | 2.815 (4) | 121 |
C6B—H6B···O4B | 0.93 | 2.24 | 2.824 (4) | 120 |
C15A—H15C···O1Bi | 0.96 | 2.51 | 3.451 (5) | 166 |
C15B—H15F···O1Aii | 0.96 | 2.55 | 3.355 (5) | 141 |
C16B—H16E···O3Biii | 0.96 | 2.59 | 3.401 (4) | 142 |
Symmetry codes: (i) x−1/2, −y+3/2, z−1; (ii) −x+1, −y+1, z−1/2; (iii) −x+1, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C16H16O4S |
Mr | 304.36 |
Crystal system, space group | Orthorhombic, Pna21 |
Temperature (K) | 100 |
a, b, c (Å) | 22.8482 (10), 31.2117 (13), 3.9876 (2) |
V (Å3) | 2843.7 (2) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.24 |
Crystal size (mm) | 0.60 × 0.06 × 0.05 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.869, 0.988 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20029, 8085, 5348 |
Rint | 0.065 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.066, 0.178, 1.01 |
No. of reflections | 8085 |
No. of parameters | 402 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.08, −0.56 |
Absolute structure | Flack (1983), with 3389 Friedel pairs |
Absolute structure parameter | 0.09 (11) |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C2B—H2B···O3A | 0.93 | 2.56 | 3.482 (10) | 171 |
C6A—H6A···O4A | 0.93 | 2.22 | 2.815 (4) | 121 |
C6B—H6B···O4B | 0.93 | 2.24 | 2.824 (4) | 120 |
C15A—H15C···O1Bi | 0.96 | 2.51 | 3.451 (5) | 166 |
C15B—H15F···O1Aii | 0.96 | 2.55 | 3.355 (5) | 141 |
C16B—H16E···O3Biii | 0.96 | 2.59 | 3.401 (4) | 142 |
Symmetry codes: (i) x−1/2, −y+3/2, z−1; (ii) −x+1, −y+1, z−1/2; (iii) −x+1, −y+1, z+1/2. |
Acknowledgements
The authors thank the Thailand Research Fund (TRF) for a research grant (No. RSA 5280033) and Prince of Songkla University for financial support. The authors also thank Universiti Sains Malaysia for a Research University grant (No. 1001/PFIZIK/811160).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Chalcones have been reported to be responsible for a variety of biological activities such as analgesic, anti-inflammatory, antibacterial and antimycotic (Go et al., 2005; Liu et al., 2008; Ni et al., 2004) as well as HIV-1 protease inhibitory (Tewtrakul et al., 2003) and tyrosinase inhibitory (Ng et al., 2009) properties. Our research on the fluorescent and biological studies of chalcones and heteroaryl chalcone derivatives (Chantrapromma et al., 2009; Suwunwong et al., 2009, 2011) led us to synthesize the title heteroaryl chalcone (I). (I) exhibits fluorescent property (Suwunwong et al., 2011) and possess moderate analgesic property. It was also tested for antibacterial activities but found to be inactive. Herein we report the crystal structure of (I).
There are two crystallographic independent molecules A and B in the asymmetric unit of (I) with different conformations of the methoxy group at para position or at atom C11 and also in bond angles (Fig. 1). The thienyl ring of molecule B is disordered over two orientations with the refined site-occupancy ratio of 0.713 (5):0.287 (5). The thienyl rings in the major and minor components are related by 180° rotation. The molecule of (I) is slightly twisted. The dihedral angle between the thienyl and benzene rings is 9.72 (19)° in molecule A whereas these values are 3.8 (4) and 2.1 (8)° for the major and minor components in the disordered molecule B. The central prop-2-en-1-one bridge (C5–C7/O1) in both molecules is slightly twisted as indicated by the torsion angle O1—C5—C6—C7 = 5.8 (6) and 6.6 (6)° in molecules A and B, respectively. The mean plane through this bridge makes dihedral angles of 8.9 (3) and 2.3 (2)° with the thienyl and benzene rings, respectively, in molecule A whereas the corresponding values are 4.2 (4) and 8.0 (3)° in molecule B for the major component, and 8.2 (8) and 8.0 (3)° for the minor component. In both molecules, all the three substituted methoxy groups are co-planar with the attached benzene with torsion angles C14—O2—C9—C10 = -5.3 (5)°; C15—O3—C11—C12 = 3.7 (5)° and C16—O4—C13—C12 = 0.3 (5)° in molecule A. The corresponding values are 0.6 (5), 178.0 (3) and 0.6 (5)° in molecule B. This also indicates that the methoxy group at the para position (or at atom C11) has different conformations as it points toward the methoxy group at the ortho position at atom C13 (in molecule A) whereas it points toward the ortho methoxy at atom C9 (in molecule B). In each molecule, intramolecular C—H···O weak interaction (Table 1) generates S(6) ring motif (Bernstein et al., 1995). The bond distances agree with the literature values (Allen et al., 1987) and are comparable with those observed in related structures (Chantrapromma et al., 2009; Fun et al., 2010, 2011; Suwunwong et al., 2009).
In the crystal packing (Fig. 2), adjacent molecules are linked into a three-dimensional network by weak C—H···O interactions (Table 1).