organic compounds
2-Amino-6-[(2,6-dichlorophenyl)imino]-3-oxocyclohexa-1,4-dienecarbaldehyde
aDepartment of Chemistry, University of Aveiro, QOPNA, 3810-193 Aveiro, Portugal, and bDepartment of Chemistry, University of Aveiro, CICECO, 3810-193 Aveiro, Portugal
*Correspondence e-mail: filipe.paz@ua.pt
The title compound, C13H8Cl2N2O2, was obtained by the oxidation of diclofenac {systematic name: 2-[2-(2,6-dichlorophenylamino)phenyl]acetic acid}, an anti-inflammatory drug, with hydrogen peroxide catalysed by chlorido[5,10,15,20-tetrakis(2,6-dichlorophenyl)porphyrinato]manganese(III), using ammonium acetate as co-catalyst. The contains two crystallographically independent molecules of the title compound (Z′ = 2). The close packing of individual molecules is mediated by a series of strong and rather directional N—H⋯Cl and N—H⋯O hydrogen bonds, plus weak π–π [distance between the individual double bonds of symmetry-related iminoquinone rings = 3.7604 (13) Å] and Cl⋯O interactions [3.0287 (18) Å].
Related literature
For background to diclofenac oxidation reactions using metalloporphyrins as catalysts, see: Othman et al. (2000). For oxidation of other drugs and other organic compounds by hydrogen peroxide catalysed by metalloporphyrins, see: Othman et al. (2000); Bernadou & Meunier (2004); Mansuy (2007); Neves et al. (2011); Simões et al. (2009); Rebelo et al. (2004a,b, 2005). For crystallographic studies from our research group of compounds with biological activity, see: Fernandes et al. (2010, 2011); Loughzail et al. (2011). For a description of the graph-set notation, see: Grell et al. (1999).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2006); cell SAINT-Plus (Bruker, 2005); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2009); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536811042619/tk2799sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811042619/tk2799Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536811042619/tk2799Isup3.cml
All chemicals were purchased from commercial sources and were used as received without further purification.
The oxidation reactions were carried out using 0.1 mmol of diclofenac (sodium salt, Sigma-Aldrich), 1.33 µmol of chloro[5,10,15,20-tetrakis(2,6-dichlorophenyl)porphyrinato]manganese(III) ([Mn(TDCPP)Cl, as catalyst) and 15 mg of co-catalyst (ammonium acetate, Fluka) in CH3CN: H2O (10:1), in a total volume of 2.0 ml under normal atmosphere at 30 °C. The oxidant employed was aqueous hydrogen peroxide 30% (w/w) (Riedel-de Haën) diluted 1:5 in CH3CN. The oxidant (0.05 mmol) was added to the reaction mixture every 15 min. After 8 h of reaction, the mixture was extracted with dichloromethane and purified by preparative TLC using the same solvent as
The product was dissolved in a minimum amount of dichloromethane and crystallized in hexane at around -16 °C to isolate crystals of the title compound.Hydrogen atoms bound to carbon were placed at their idealized positions and were included in the final structural model in riding-motion approximation with C—H = 0.95 Å. The isotropic thermal displacement parameters for these hydrogen atoms were fixed at 1.2×Ueq of the respective parent carbon atom.
Hydrogen atoms bound to nitrogen were directly located from difference Fourier maps and included in the final structural model with the N—H and H···H distances restrained to 0.95 (1) and 1.55 (1) Å, respectively. The Uiso of these hydrogen atoms was fixed at 1.5×Ueq of the nitrogen atom to which they are attached.
Data collection: APEX2 (Bruker, 2006); cell
SAINT-Plus (Bruker, 2005); data reduction: SAINT-Plus (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C13H8Cl2N2O2 | F(000) = 1200 |
Mr = 295.11 | Dx = 1.556 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5810 reflections |
a = 17.1738 (14) Å | θ = 2.4–25.3° |
b = 10.5718 (8) Å | µ = 0.51 mm−1 |
c = 14.1457 (11) Å | T = 150 K |
β = 101.192 (5)° | Plate, red |
V = 2519.4 (3) Å3 | 0.07 × 0.04 × 0.01 mm |
Z = 8 |
Bruker X8 KappaCCD APEXII diffractometer | 4600 independent reflections |
Radiation source: fine-focus sealed tube | 3466 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
ω and ϕ scans | θmax = 25.4°, θmin = 3.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1997) | h = −20→20 |
Tmin = 0.965, Tmax = 0.995 | k = −12→11 |
24324 measured reflections | l = −16→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.032 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0396P)2 + 1.1952P] where P = (Fo2 + 2Fc2)/3 |
4600 reflections | (Δ/σ)max = 0.001 |
355 parameters | Δρmax = 0.24 e Å−3 |
6 restraints | Δρmin = −0.24 e Å−3 |
C13H8Cl2N2O2 | V = 2519.4 (3) Å3 |
Mr = 295.11 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 17.1738 (14) Å | µ = 0.51 mm−1 |
b = 10.5718 (8) Å | T = 150 K |
c = 14.1457 (11) Å | 0.07 × 0.04 × 0.01 mm |
β = 101.192 (5)° |
Bruker X8 KappaCCD APEXII diffractometer | 4600 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1997) | 3466 reflections with I > 2σ(I) |
Tmin = 0.965, Tmax = 0.995 | Rint = 0.040 |
24324 measured reflections |
R[F2 > 2σ(F2)] = 0.032 | 6 restraints |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.24 e Å−3 |
4600 reflections | Δρmin = −0.24 e Å−3 |
355 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.49916 (4) | 0.47039 (5) | 0.65986 (4) | 0.03327 (15) | |
Cl2 | 0.26299 (4) | 0.18196 (7) | 0.74680 (4) | 0.04150 (17) | |
Cl3 | −0.05691 (3) | 0.62367 (6) | 0.53847 (4) | 0.03368 (16) | |
Cl4 | 0.12169 (4) | 0.98217 (6) | 0.40871 (5) | 0.04362 (18) | |
O1 | 0.58372 (8) | 0.22644 (14) | 1.02574 (10) | 0.0271 (3) | |
O2 | 0.36779 (9) | 0.51109 (15) | 1.11813 (10) | 0.0308 (4) | |
O3 | 0.13914 (10) | 0.96716 (17) | 0.83068 (11) | 0.0381 (4) | |
O4 | 0.36096 (9) | 0.70522 (15) | 0.73428 (10) | 0.0317 (4) | |
N1 | 0.42445 (10) | 0.31116 (17) | 0.78706 (12) | 0.0254 (4) | |
N2 | 0.49446 (10) | 0.36348 (17) | 1.12812 (12) | 0.0234 (4) | |
H2X | 0.4811 (12) | 0.396 (2) | 1.1829 (11) | 0.035* | |
H2Y | 0.5399 (9) | 0.3149 (19) | 1.1359 (14) | 0.035* | |
N3 | 0.06269 (10) | 0.83177 (18) | 0.56257 (12) | 0.0282 (4) | |
N4 | 0.27682 (11) | 0.84936 (19) | 0.83330 (12) | 0.0294 (4) | |
H4X | 0.3282 (7) | 0.826 (2) | 0.8623 (15) | 0.044* | |
H4Y | 0.2502 (11) | 0.900 (2) | 0.8693 (14) | 0.044* | |
C1 | 0.37540 (13) | 0.3337 (2) | 0.69673 (14) | 0.0246 (5) | |
C2 | 0.40534 (13) | 0.4033 (2) | 0.62735 (15) | 0.0264 (5) | |
C3 | 0.36328 (15) | 0.4175 (2) | 0.53380 (15) | 0.0324 (6) | |
H3 | 0.3847 | 0.4657 | 0.4883 | 0.039* | |
C4 | 0.28988 (15) | 0.3606 (2) | 0.50764 (15) | 0.0351 (6) | |
H4 | 0.2604 | 0.3707 | 0.4439 | 0.042* | |
C5 | 0.25886 (14) | 0.2893 (2) | 0.57318 (16) | 0.0340 (6) | |
H5 | 0.2086 | 0.2496 | 0.5547 | 0.041* | |
C6 | 0.30200 (13) | 0.2760 (2) | 0.66665 (15) | 0.0293 (5) | |
C7 | 0.41077 (12) | 0.36167 (19) | 0.86545 (14) | 0.0208 (4) | |
C8 | 0.46514 (12) | 0.33341 (19) | 0.95584 (14) | 0.0189 (4) | |
C9 | 0.45032 (12) | 0.38251 (19) | 1.04179 (14) | 0.0205 (4) | |
C10 | 0.37993 (12) | 0.4683 (2) | 1.04199 (15) | 0.0234 (5) | |
C11 | 0.33030 (13) | 0.4983 (2) | 0.94897 (15) | 0.0266 (5) | |
H11 | 0.2869 | 0.5547 | 0.9464 | 0.032* | |
C12 | 0.34440 (12) | 0.4484 (2) | 0.86732 (15) | 0.0241 (5) | |
H12 | 0.3103 | 0.4699 | 0.8083 | 0.029* | |
C13 | 0.53477 (12) | 0.25818 (19) | 0.95380 (15) | 0.0223 (5) | |
H13 | 0.5436 | 0.2311 | 0.8927 | 0.027* | |
C14 | 0.03131 (12) | 0.7975 (2) | 0.46603 (14) | 0.0260 (5) | |
C15 | −0.02731 (13) | 0.7046 (2) | 0.44466 (14) | 0.0273 (5) | |
C16 | −0.06283 (14) | 0.6751 (2) | 0.35062 (15) | 0.0312 (5) | |
H16 | −0.1021 | 0.6107 | 0.3381 | 0.037* | |
C17 | −0.04074 (14) | 0.7399 (2) | 0.27537 (15) | 0.0340 (6) | |
H17 | −0.0651 | 0.7203 | 0.2109 | 0.041* | |
C18 | 0.01639 (14) | 0.8329 (2) | 0.29324 (15) | 0.0322 (6) | |
H18 | 0.0317 | 0.8772 | 0.2413 | 0.039* | |
C19 | 0.05143 (13) | 0.8613 (2) | 0.38746 (16) | 0.0295 (5) | |
C20 | 0.13475 (12) | 0.8026 (2) | 0.60230 (14) | 0.0228 (5) | |
C21 | 0.16673 (12) | 0.8469 (2) | 0.69960 (14) | 0.0224 (5) | |
C22 | 0.24313 (12) | 0.8152 (2) | 0.74440 (14) | 0.0228 (5) | |
C23 | 0.29463 (13) | 0.7359 (2) | 0.69351 (15) | 0.0253 (5) | |
C24 | 0.26042 (14) | 0.6948 (2) | 0.59531 (15) | 0.0317 (5) | |
H24 | 0.2919 | 0.6462 | 0.5605 | 0.038* | |
C25 | 0.18613 (13) | 0.7242 (2) | 0.55375 (15) | 0.0286 (5) | |
H25 | 0.1656 | 0.6936 | 0.4907 | 0.034* | |
C26 | 0.11859 (13) | 0.9265 (2) | 0.74825 (16) | 0.0299 (5) | |
H26 | 0.0673 | 0.9490 | 0.7140 | 0.036* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0426 (3) | 0.0302 (3) | 0.0295 (3) | 0.0019 (3) | 0.0133 (3) | −0.0011 (2) |
Cl2 | 0.0421 (4) | 0.0542 (4) | 0.0276 (3) | −0.0097 (3) | 0.0050 (3) | 0.0044 (3) |
Cl3 | 0.0358 (3) | 0.0457 (4) | 0.0196 (3) | −0.0011 (3) | 0.0053 (2) | 0.0034 (2) |
Cl4 | 0.0342 (3) | 0.0497 (4) | 0.0439 (4) | −0.0070 (3) | −0.0002 (3) | 0.0110 (3) |
O1 | 0.0270 (8) | 0.0292 (8) | 0.0224 (8) | 0.0023 (7) | −0.0018 (7) | 0.0026 (7) |
O2 | 0.0319 (9) | 0.0377 (9) | 0.0247 (8) | 0.0008 (7) | 0.0101 (7) | −0.0064 (7) |
O3 | 0.0365 (9) | 0.0512 (11) | 0.0256 (8) | 0.0079 (8) | 0.0039 (7) | −0.0143 (8) |
O4 | 0.0248 (8) | 0.0420 (10) | 0.0261 (8) | 0.0089 (7) | −0.0003 (7) | 0.0023 (7) |
N1 | 0.0298 (10) | 0.0297 (10) | 0.0165 (9) | 0.0040 (8) | 0.0036 (8) | 0.0028 (8) |
N2 | 0.0255 (10) | 0.0270 (10) | 0.0174 (9) | −0.0026 (8) | 0.0036 (8) | −0.0011 (8) |
N3 | 0.0258 (10) | 0.0383 (11) | 0.0189 (9) | 0.0050 (9) | 0.0008 (8) | −0.0034 (8) |
N4 | 0.0281 (10) | 0.0381 (12) | 0.0190 (9) | 0.0055 (9) | −0.0028 (8) | −0.0049 (8) |
C1 | 0.0306 (12) | 0.0250 (12) | 0.0173 (10) | 0.0116 (10) | 0.0023 (9) | 0.0003 (9) |
C2 | 0.0377 (13) | 0.0222 (12) | 0.0207 (10) | 0.0101 (10) | 0.0087 (9) | −0.0006 (9) |
C3 | 0.0524 (16) | 0.0274 (13) | 0.0182 (11) | 0.0140 (12) | 0.0093 (10) | 0.0022 (10) |
C4 | 0.0501 (16) | 0.0367 (14) | 0.0155 (10) | 0.0157 (12) | −0.0014 (10) | −0.0010 (10) |
C5 | 0.0338 (13) | 0.0406 (14) | 0.0250 (12) | 0.0088 (11) | −0.0007 (10) | −0.0064 (11) |
C6 | 0.0341 (13) | 0.0324 (13) | 0.0209 (11) | 0.0082 (11) | 0.0038 (10) | 0.0028 (10) |
C7 | 0.0212 (11) | 0.0206 (11) | 0.0205 (10) | −0.0022 (9) | 0.0040 (9) | 0.0032 (9) |
C8 | 0.0204 (10) | 0.0177 (10) | 0.0182 (10) | −0.0027 (8) | 0.0027 (8) | 0.0023 (8) |
C9 | 0.0209 (10) | 0.0197 (11) | 0.0206 (10) | −0.0065 (9) | 0.0032 (9) | 0.0026 (9) |
C10 | 0.0230 (11) | 0.0233 (11) | 0.0248 (11) | −0.0064 (9) | 0.0067 (9) | −0.0017 (9) |
C11 | 0.0230 (11) | 0.0273 (12) | 0.0288 (11) | 0.0018 (10) | 0.0033 (9) | 0.0004 (10) |
C12 | 0.0246 (11) | 0.0236 (11) | 0.0224 (11) | 0.0023 (9) | 0.0002 (9) | 0.0019 (9) |
C13 | 0.0261 (11) | 0.0194 (11) | 0.0212 (10) | −0.0030 (9) | 0.0041 (9) | 0.0000 (9) |
C14 | 0.0220 (11) | 0.0367 (13) | 0.0186 (10) | 0.0096 (10) | 0.0018 (9) | −0.0012 (10) |
C15 | 0.0266 (12) | 0.0361 (13) | 0.0188 (10) | 0.0048 (10) | 0.0036 (9) | 0.0015 (10) |
C16 | 0.0308 (13) | 0.0394 (14) | 0.0221 (11) | 0.0013 (11) | 0.0016 (10) | −0.0003 (10) |
C17 | 0.0362 (13) | 0.0468 (15) | 0.0164 (10) | 0.0046 (12) | −0.0011 (10) | −0.0023 (10) |
C18 | 0.0332 (13) | 0.0421 (14) | 0.0210 (11) | 0.0095 (11) | 0.0046 (10) | 0.0074 (10) |
C19 | 0.0220 (11) | 0.0357 (13) | 0.0298 (12) | 0.0043 (10) | 0.0029 (9) | 0.0028 (10) |
C20 | 0.0233 (11) | 0.0257 (12) | 0.0193 (10) | 0.0016 (9) | 0.0035 (9) | 0.0024 (9) |
C21 | 0.0239 (11) | 0.0247 (12) | 0.0189 (10) | 0.0009 (9) | 0.0046 (9) | −0.0011 (9) |
C22 | 0.0229 (11) | 0.0256 (11) | 0.0194 (10) | −0.0007 (9) | 0.0031 (9) | 0.0008 (9) |
C23 | 0.0245 (12) | 0.0289 (12) | 0.0219 (10) | 0.0032 (10) | 0.0029 (9) | 0.0029 (9) |
C24 | 0.0323 (13) | 0.0386 (14) | 0.0234 (11) | 0.0126 (11) | 0.0032 (10) | −0.0069 (10) |
C25 | 0.0321 (12) | 0.0335 (13) | 0.0188 (10) | 0.0060 (10) | 0.0015 (9) | −0.0054 (10) |
C26 | 0.0245 (12) | 0.0380 (14) | 0.0265 (12) | 0.0036 (10) | 0.0030 (9) | −0.0023 (11) |
Cl1—C2 | 1.738 (2) | C7—C12 | 1.467 (3) |
Cl2—C6 | 1.737 (2) | C8—C9 | 1.390 (3) |
Cl3—C15 | 1.736 (2) | C8—C13 | 1.441 (3) |
Cl4—C19 | 1.743 (2) | C9—C10 | 1.512 (3) |
O1—C13 | 1.234 (2) | C10—C11 | 1.457 (3) |
O2—C10 | 1.223 (2) | C11—C12 | 1.334 (3) |
O3—C26 | 1.229 (3) | C11—H11 | 0.9500 |
O4—C23 | 1.217 (2) | C12—H12 | 0.9500 |
N1—C7 | 1.293 (3) | C13—H13 | 0.9500 |
N1—C1 | 1.408 (3) | C14—C15 | 1.397 (3) |
N2—C9 | 1.322 (2) | C14—C19 | 1.400 (3) |
N2—H2X | 0.917 (9) | C15—C16 | 1.387 (3) |
N2—H2Y | 0.922 (9) | C16—C17 | 1.380 (3) |
N3—C20 | 1.293 (3) | C16—H16 | 0.9500 |
N3—C14 | 1.414 (3) | C17—C18 | 1.377 (3) |
N4—C22 | 1.328 (3) | C17—H17 | 0.9500 |
N4—H4X | 0.931 (9) | C18—C19 | 1.385 (3) |
N4—H4Y | 0.921 (9) | C18—H18 | 0.9500 |
C1—C6 | 1.390 (3) | C20—C21 | 1.456 (3) |
C1—C2 | 1.402 (3) | C20—C25 | 1.474 (3) |
C2—C3 | 1.387 (3) | C21—C22 | 1.383 (3) |
C3—C4 | 1.381 (3) | C21—C26 | 1.444 (3) |
C3—H3 | 0.9500 | C22—C23 | 1.501 (3) |
C4—C5 | 1.380 (3) | C23—C24 | 1.465 (3) |
C4—H4 | 0.9500 | C24—C25 | 1.334 (3) |
C5—C6 | 1.392 (3) | C24—H24 | 0.9500 |
C5—H5 | 0.9500 | C25—H25 | 0.9500 |
C7—C8 | 1.460 (3) | C26—H26 | 0.9500 |
C7—N1—C1 | 122.17 (18) | C7—C12—H12 | 118.8 |
C9—N2—H2X | 122.1 (13) | O1—C13—C8 | 124.65 (19) |
C9—N2—H2Y | 121.0 (13) | O1—C13—H13 | 117.7 |
H2X—N2—H2Y | 116.9 (14) | C8—C13—H13 | 117.7 |
C20—N3—C14 | 120.77 (18) | C15—C14—C19 | 116.48 (19) |
C22—N4—H4X | 123.3 (13) | C15—C14—N3 | 120.83 (19) |
C22—N4—H4Y | 120.7 (13) | C19—C14—N3 | 122.5 (2) |
H4X—N4—H4Y | 116.0 (14) | C16—C15—C14 | 122.0 (2) |
C6—C1—C2 | 116.73 (19) | C16—C15—Cl3 | 118.86 (18) |
C6—C1—N1 | 123.4 (2) | C14—C15—Cl3 | 119.13 (16) |
C2—C1—N1 | 119.2 (2) | C17—C16—C15 | 119.5 (2) |
C3—C2—C1 | 122.0 (2) | C17—C16—H16 | 120.2 |
C3—C2—Cl1 | 119.52 (18) | C15—C16—H16 | 120.2 |
C1—C2—Cl1 | 118.43 (16) | C18—C17—C16 | 120.4 (2) |
C4—C3—C2 | 119.2 (2) | C18—C17—H17 | 119.8 |
C4—C3—H3 | 120.4 | C16—C17—H17 | 119.8 |
C2—C3—H3 | 120.4 | C17—C18—C19 | 119.5 (2) |
C5—C4—C3 | 120.6 (2) | C17—C18—H18 | 120.2 |
C5—C4—H4 | 119.7 | C19—C18—H18 | 120.2 |
C3—C4—H4 | 119.7 | C18—C19—C14 | 122.1 (2) |
C4—C5—C6 | 119.3 (2) | C18—C19—Cl4 | 118.83 (18) |
C4—C5—H5 | 120.3 | C14—C19—Cl4 | 119.07 (17) |
C6—C5—H5 | 120.3 | N3—C20—C21 | 119.18 (19) |
C1—C6—C5 | 122.1 (2) | N3—C20—C25 | 122.72 (19) |
C1—C6—Cl2 | 119.52 (16) | C21—C20—C25 | 118.09 (18) |
C5—C6—Cl2 | 118.42 (19) | C22—C21—C26 | 120.17 (19) |
N1—C7—C8 | 118.35 (18) | C22—C21—C20 | 120.36 (19) |
N1—C7—C12 | 123.02 (19) | C26—C21—C20 | 119.46 (18) |
C8—C7—C12 | 118.62 (18) | N4—C22—C21 | 124.6 (2) |
C9—C8—C13 | 121.14 (18) | N4—C22—C23 | 114.66 (18) |
C9—C8—C7 | 119.67 (18) | C21—C22—C23 | 120.70 (18) |
C13—C8—C7 | 119.16 (17) | O4—C23—C24 | 122.5 (2) |
N2—C9—C8 | 125.56 (19) | O4—C23—C22 | 120.41 (19) |
N2—C9—C10 | 113.89 (18) | C24—C23—C22 | 117.07 (18) |
C8—C9—C10 | 120.53 (18) | C25—C24—C23 | 121.5 (2) |
O2—C10—C11 | 123.0 (2) | C25—C24—H24 | 119.3 |
O2—C10—C9 | 119.78 (19) | C23—C24—H24 | 119.3 |
C11—C10—C9 | 117.17 (18) | C24—C25—C20 | 122.3 (2) |
C12—C11—C10 | 121.5 (2) | C24—C25—H25 | 118.9 |
C12—C11—H11 | 119.2 | C20—C25—H25 | 118.9 |
C10—C11—H11 | 119.2 | O3—C26—C21 | 124.8 (2) |
C11—C12—C7 | 122.34 (19) | O3—C26—H26 | 117.6 |
C11—C12—H12 | 118.8 | C21—C26—H26 | 117.6 |
C7—N1—C1—C6 | −77.3 (3) | C20—N3—C14—C15 | 110.1 (2) |
C7—N1—C1—C2 | 111.9 (2) | C20—N3—C14—C19 | −75.8 (3) |
C6—C1—C2—C3 | 1.7 (3) | C19—C14—C15—C16 | 1.2 (3) |
N1—C1—C2—C3 | 173.0 (2) | N3—C14—C15—C16 | 175.7 (2) |
C6—C1—C2—Cl1 | −176.76 (16) | C19—C14—C15—Cl3 | −178.67 (16) |
N1—C1—C2—Cl1 | −5.4 (3) | N3—C14—C15—Cl3 | −4.2 (3) |
C1—C2—C3—C4 | −0.4 (3) | C14—C15—C16—C17 | −0.8 (3) |
Cl1—C2—C3—C4 | 177.98 (17) | Cl3—C15—C16—C17 | 179.07 (18) |
C2—C3—C4—C5 | −0.8 (3) | C15—C16—C17—C18 | 0.3 (4) |
C3—C4—C5—C6 | 0.7 (3) | C16—C17—C18—C19 | −0.2 (3) |
C2—C1—C6—C5 | −1.8 (3) | C17—C18—C19—C14 | 0.7 (3) |
N1—C1—C6—C5 | −172.7 (2) | C17—C18—C19—Cl4 | −178.31 (18) |
C2—C1—C6—Cl2 | 177.02 (16) | C15—C14—C19—C18 | −1.1 (3) |
N1—C1—C6—Cl2 | 6.1 (3) | N3—C14—C19—C18 | −175.5 (2) |
C4—C5—C6—C1 | 0.7 (3) | C15—C14—C19—Cl4 | 177.85 (17) |
C4—C5—C6—Cl2 | −178.15 (17) | N3—C14—C19—Cl4 | 3.5 (3) |
C1—N1—C7—C8 | −179.69 (19) | C14—N3—C20—C21 | 175.9 (2) |
C1—N1—C7—C12 | −1.3 (3) | C14—N3—C20—C25 | −5.1 (3) |
N1—C7—C8—C9 | −177.60 (19) | N3—C20—C21—C22 | 178.9 (2) |
C12—C7—C8—C9 | 3.9 (3) | C25—C20—C21—C22 | −0.2 (3) |
N1—C7—C8—C13 | 4.4 (3) | N3—C20—C21—C26 | −2.5 (3) |
C12—C7—C8—C13 | −174.09 (18) | C25—C20—C21—C26 | 178.5 (2) |
C13—C8—C9—N2 | −2.5 (3) | C26—C21—C22—N4 | 2.5 (3) |
C7—C8—C9—N2 | 179.58 (19) | C20—C21—C22—N4 | −178.8 (2) |
C13—C8—C9—C10 | 175.95 (18) | C26—C21—C22—C23 | −178.1 (2) |
C7—C8—C9—C10 | −2.0 (3) | C20—C21—C22—C23 | 0.5 (3) |
N2—C9—C10—O2 | −1.2 (3) | N4—C22—C23—O4 | 1.6 (3) |
C8—C9—C10—O2 | −179.80 (19) | C21—C22—C23—O4 | −177.8 (2) |
N2—C9—C10—C11 | 177.42 (18) | N4—C22—C23—C24 | 179.7 (2) |
C8—C9—C10—C11 | −1.2 (3) | C21—C22—C23—C24 | 0.3 (3) |
O2—C10—C11—C12 | −178.9 (2) | O4—C23—C24—C25 | 176.6 (2) |
C9—C10—C11—C12 | 2.5 (3) | C22—C23—C24—C25 | −1.5 (3) |
C10—C11—C12—C7 | −0.6 (3) | C23—C24—C25—C20 | 1.9 (4) |
N1—C7—C12—C11 | 178.9 (2) | N3—C20—C25—C24 | 179.9 (2) |
C8—C7—C12—C11 | −2.7 (3) | C21—C20—C25—C24 | −1.0 (3) |
C9—C8—C13—O1 | 3.6 (3) | C22—C21—C26—O3 | −2.6 (4) |
C7—C8—C13—O1 | −178.44 (19) | C20—C21—C26—O3 | 178.7 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2X···Cl1i | 0.92 (1) | 2.60 (1) | 3.4590 (18) | 156 (2) |
N2—H2Y···O1 | 0.92 (1) | 2.08 (2) | 2.722 (2) | 126 (2) |
N2—H2Y···O4i | 0.92 (1) | 2.26 (2) | 2.933 (2) | 130 (2) |
N4—H4X···O1i | 0.93 (1) | 2.04 (1) | 2.916 (2) | 155 (2) |
N4—H4Y···O3 | 0.92 (1) | 2.01 (2) | 2.666 (3) | 127 (2) |
Symmetry code: (i) −x+1, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C13H8Cl2N2O2 |
Mr | 295.11 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 150 |
a, b, c (Å) | 17.1738 (14), 10.5718 (8), 14.1457 (11) |
β (°) | 101.192 (5) |
V (Å3) | 2519.4 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.51 |
Crystal size (mm) | 0.07 × 0.04 × 0.01 |
Data collection | |
Diffractometer | Bruker X8 KappaCCD APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1997) |
Tmin, Tmax | 0.965, 0.995 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 24324, 4600, 3466 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.032, 0.085, 1.02 |
No. of reflections | 4600 |
No. of parameters | 355 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.24, −0.24 |
Computer programs: APEX2 (Bruker, 2006), SAINT-Plus (Bruker, 2005), SHELXTL (Sheldrick, 2008), DIAMOND (Brandenburg, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2X···Cl1i | 0.917 (9) | 2.601 (13) | 3.4590 (18) | 156.0 (19) |
N2—H2Y···O1 | 0.922 (9) | 2.080 (16) | 2.722 (2) | 125.5 (16) |
N2—H2Y···O4i | 0.922 (9) | 2.259 (18) | 2.933 (2) | 129.5 (16) |
N4—H4X···O1i | 0.931 (9) | 2.044 (14) | 2.916 (2) | 155 (2) |
N4—H4Y···O3 | 0.921 (9) | 2.008 (17) | 2.666 (3) | 127.0 (17) |
Symmetry code: (i) −x+1, −y+1, −z+2. |
Acknowledgements
We are grateful to the Fundação para a Ciência e a Tecnologia (FCT/FEDER, Portugal) for their general financial support to QOPNA and CICECO, and for the post-doctoral research grant No. SFRH/BPD/63736/2009 (to JAF). Thanks are also due to the FCT for specific funding toward the purchase of the single-crystal diffractometer.
References
Bernadou, J. & Meunier, B. (2004). Adv. Synth. Catal. 346, 171-184. Web of Science CrossRef CAS Google Scholar
Brandenburg, K. (2009). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2005). SAINT-Plus. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2006). APEX2. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Fernandes, J. A., Almeida Paz, F. A., Marques, J., Marques, M. P. M. & Braga, S. S. (2011). Acta Cryst. C67, o57–o59. Web of Science CSD CrossRef IUCr Journals Google Scholar
Fernandes, J. A., Almeida Paz, F. A., Vilela, S. M. F., Tomé, J. C., Cavaleiro, J. A. S., Ribeiro-Claro, P. J. A. & Rocha, J. (2010). Acta Cryst. E66, o2271–o2272. Web of Science CSD CrossRef IUCr Journals Google Scholar
Grell, J., Bernstein, J. & Tinhofer, G. (1999). Acta Cryst. B55, 1030–1043. Web of Science CrossRef CAS IUCr Journals Google Scholar
Loughzail, M., Fernandes, J. A., Baouid, A., Essaber, M., Cavaleiro, J. A. S. & Almeida Paz, F. A. (2011). Acta Cryst. E67, o2075–o2076. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Mansuy, D. (2007). C. R. Chimie, 10, 392–413. Web of Science CrossRef CAS Google Scholar
Neves, C. M. B., Simões, M. M. Q., Santos, I. C. M. S., Domingues, F. M. J., Neves, M. G. P. M. S., Paz, F. A. A., Silva, A. M. S. & Cavaleiro, J. A. S. (2011). Tetrahedron Lett. 52, 2898–2902. Web of Science CSD CrossRef CAS Google Scholar
Othman, S., Mouries, V. M., Bensoussan, C., Battioni, P. & Mansuy, D. (2000). Bioorg. Med. Chem. 3, 751–755. CAS Google Scholar
Rebelo, S. L. H., Pereira, M. M., Simões, M. M. Q., Neves, M. G. P. M. S. & Cavaleiro, J. A. S. (2005). J. Catal. 234, 76–87. CrossRef CAS Google Scholar
Rebelo, S. L. H., Simões, M. M. Q., Neves, M. G. P. M. S., Silva, A. M. S. & Cavaleiro, J. A. S. (2004a). Chem. Commun. pp. 608–609. Web of Science CrossRef Google Scholar
Rebelo, S. L. H., Simões, M. M. Q., Neves, M. G. P. M. S., Silva, A. M. S., Cavaleiro, J. A. S., Peixoto, A. F., Pereira, M. M., Silva, M. R., Paixão, J. A. & Beja, A. M. (2004b). Eur. J. Org. Chem. pp. 4778–4787. Web of Science CSD CrossRef Google Scholar
Sheldrick, G. M. (1997). SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Simões, M. M. Q., De Paula, R., Neves, M. G. P. M. S. & Cavaleiro, J. A. S. (2009). J. Porphyrins Phthalocyanines, 13, 589–596. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The possibility of using synthetic metalloporphyrins as biomimetic catalysts, which are able to mimic cytochrome P450 enzymes, has attracted the interest of many research groups (Othman et al., 2000; Bernadou et al., 2004; Mansuy, 2007), including ours (Neves et al., 2011; Simões et al., 2009; Rebelo et al., 2004a, 2004b, 2005). In particular, our current research is focused on the preparation of putative metabolites by the in vitro oxidation of drugs. These studies will allow the production of metabolites in the amounts of milligrams, the isolation and identification of unstable intermediates and the understanding of the mechanism of action of drugs (Bernadou et al., 2004). The title compound, C13H8Cl2N2O2, was obtained by the oxidation of 2-(2-(2,6-dichlorophenylamino)phenyl)acetic acid (diclofenac), an anti-inflammatory drug, with hydrogen peroxide catalysed by chloro[5,10,15,20-tetrakis(2,6-dichlorophenyl)porphyrinato]manganese(III) using ammonium acetate as co-catalyst. Following our on-going interest on the structural features of compounds with biological activity (Fernandes et al., 2010, 2011; Loughzail et al. 2011) here we wish to report the crystal structure of the oxidation product of diclofenac.
The asymmetric unit of the title compound comprises two whole molecules of C13H8Cl2N2O2 (Fig. 1). A comparison between the geometrical features of the two molecules reveals that bond distances and angles involving equivalent atoms are very similar (deviations smaller than 0.012 Å and 1.6°, respectively). There are, however, some considerable differences concerning torsion angles, namely those subtended by the two six-membered rings in each molecule: 71.97 (10)° for molecule A and 75.89 (10)° for molecule B.
The crystal is rich in supramolecular interactions, namely π–π (involving the individual double bonds of the iminoquinone rings), Cl···O and hydrogen bonding interactions. The π–π interactions occur between pairs of molecules A involving the aromatic and the iminoquinone rings, or two iminoquinone rings [distance between centroids of 3.7604 (13) and 3.9595 (13) Å, respectively - purple dashed bonds in Figure 2]. A pair of B molecules also exhibits a short Cl···O interaction (Cl···O distance 3.0287 (18) Å, not shown].
The two crystallographically independent molecules have a different behaviour concerning the hydrogen bonding network in which they are involved (Figure 2 and Table 1 for geometric details). Molecule A is engaged in a bifurcated N—H···(O,O) hydrogen bond, which is shared by the aldehyde group (intramolecular) and the ketone group of a neighbouring B molecule. The remaining N—H moiety of molecule A donates the hydrogen atom to a Cl atom of a neighbouring A molecule. The NH2 group of molecule B participates in two N—H···Oaldehyde interactions, of which one is intramolecular and the other occurs with molecule A. The hydrogen bonds form discrete clusters (violet dashed lines in Fig. 2) which can be described as the merging of two rings with a graph set notations R11(6) and R22(11), respectively (Grell et al., 1999).
Unequivocally, the strongest connection among adjacent molecules corresponds to that of the latter graph set, which leads to the formation of dimers as depicted in Fig. 2. The crystal packing is, thus, promoted by the close packing of such dimers: firstly, and mediated by the aforementioned weak π–π contacts, dimers form columnar arrangements along the c-axis of the unit cell. Secondly, columns pack in the ab plane in a typical brick-wall-type fashion as depicted in Fig. 3.