organic compounds
Tuberostemoamide hemihydrate
aGuangdong Province Key Laboratory of Pharmacodynamic Constituents of, Traditional Chinese Medicine and New Drugs Research, Institute of Traditional Chinese Medicine and Natural Products, Jinan University, Guangzhou 510632, People's Republic of China, and bSchool of Biological Sciences, The Chinese University of Hong Kong, Hong Kong, People's Republic of China
*Correspondence e-mail: trwjiang@jnu.edu.cn
In the S,2R,2′R,3′S,6′R)-3′-ethyl-4-methyl-5H-5′-oxa-10′-azaspiro[furan-2,4′-tricyclo[8.3.0.02,6]tridecane]-5,11′-dione hemihydrate}, C17H23NO4·0.5H2O, the contains two molecules of tuberostemoamide with similar conformations and one water molecule. The tuberostemoamide molecule is composed of one seven-membered ring (A) and three five-membered rings (B, C and D). Ring A exists in a chair conformation, both rings B and C exist in envelope conformations, and ring D is almost planar with a mean deviation of 0.0143 (4) Å in one molecule and 0.0095 (3) Å in the other.. The dihedral angles between the planes of rings C and D are 75.1 (3)° in one molecule and 74.5 (3)° for the other. The solvent water molecule links the tuberostemoamide molecules through O—H⋯O(ketone) hydrogen bonds. Weak C—H⋯O interactions are also present, involving both the water molecule and a heterocyclic ether O-atom acceptor.
of the title compound {systematic name: (1′Related literature
For general background, see: Pilli & Ferreira de Oliveira (2000); Jiang et al. (2006). For the biological activity of Stemona see: Xu et al. (2010); Lin et al. (2008); Hu et al. (2009).
Experimental
Crystal data
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Bruker, 1998); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
10.1107/S1600536811043340/zs2152sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536811043340/zs2152Isup2.hkl
The dry ground herbal sample Radix stemonae (8.0 kg) was refluxed with 95% EtOH. After evaporation of the solvent, the crude extract was acidified with 4% HCl and filtered, and the filtrate was washed with diethyl ether (800 ml). The pH of the aqueous layer was raised to 9 with aqueous ammonia (35%) and then extracted with Et2O (800 ml). The Et2O layer was evaporated to afford the crude
(25 g), which was subjected to over silica gel, and eluted with cyclohexane-ethyl acetate (10:1 to 0:1) to yield fourteen fractions. Fraction 8 (4 g) was subjected to reverse phase silica gel to yield seven subfractions, after which the second subfraction (60% CH3CN, 8 mg) was purified by preparative HPLC eluted by 25% CH3CN to yield tuberostemoamide (4 mg). The colorless crystals were obtained from a methanol solution at room temperature.The C-bound H atoms were positioned geometrically and were included in the
in the riding-model approximation, with C—H = 0.96 Å (CH3) and Uiso(H) = 1.5Ueq(C); 0.97 Å (CH2) and Uiso(H) = 1.2Ueq(C); 0.93 Å (aryl H) and Uiso(H)= 1.2Ueq(C); O—H = 0.82 Å and Uiso(H) = 1.5Ueq(O). In the absence of a suitable heavy atom the determined for the parent compound [-0.1 (2) for 1743 Friedel pairs] is not definitive of the of tuberostemoamide but for the chosen the 5 chiral centers of both independent molecules are C8(R), C9(R), C9A(S), C10(S), C11(R).Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 1998); data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Bruker, 1998); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C17H23NO4·0.5H2O | F(000) = 1352 |
Mr = 314.37 | Dx = 1.237 Mg m−3 |
Orthorhombic, P212121 | Cu Kα radiation, λ = 1.54184 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 4774 reflections |
a = 8.6412 (2) Å | θ = 3.7–62.5° |
b = 10.7998 (2) Å | µ = 0.73 mm−1 |
c = 36.1685 (7) Å | T = 298 K |
V = 3375.36 (12) Å3 | Block, colorless |
Z = 8 | 0.42 × 0.30 × 0.27 mm |
Oxford Diffraction Gemini S Ultra CCD diffractometer | 4837 independent reflections |
Radiation source: fine-focus sealed tube | 4514 reflections with I > 2˘I) |
Graphite monochromator | Rint = 0.021 |
ω scans | θmax = 62.6°, θmin = 4.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | h = −9→9 |
Tmin = 0.822, Tmax = 1.000 | k = −12→10 |
8573 measured reflections | l = −19→41 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.050 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.142 | w = 1/[σ2(Fo2) + (0.0913P)2 + 0.4948P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max < 0.001 |
4837 reflections | Δρmax = 0.51 e Å−3 |
412 parameters | Δρmin = −0.24 e Å−3 |
2 restraints | Absolute structure: Flack (1983), 1743 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.1 (2) |
C17H23NO4·0.5H2O | V = 3375.36 (12) Å3 |
Mr = 314.37 | Z = 8 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 8.6412 (2) Å | µ = 0.73 mm−1 |
b = 10.7998 (2) Å | T = 298 K |
c = 36.1685 (7) Å | 0.42 × 0.30 × 0.27 mm |
Oxford Diffraction Gemini S Ultra CCD diffractometer | 4837 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | 4514 reflections with I > 2˘I) |
Tmin = 0.822, Tmax = 1.000 | Rint = 0.021 |
8573 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.142 | Δρmax = 0.51 e Å−3 |
S = 1.06 | Δρmin = −0.24 e Å−3 |
4837 reflections | Absolute structure: Flack (1983), 1743 Friedel pairs |
412 parameters | Absolute structure parameter: −0.1 (2) |
2 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1' | 0.3987 (3) | 0.6908 (2) | 0.08626 (7) | 0.0818 (7) | |
O2' | 0.9749 (2) | 0.7450 (2) | 0.18688 (6) | 0.0688 (6) | |
O3' | 1.0512 (3) | 0.9441 (2) | 0.20168 (6) | 0.0792 (7) | |
O4' | 1.2437 (4) | 1.0530 (3) | 0.22680 (11) | 0.1210 (12) | |
C1' | 0.4852 (4) | 0.7634 (3) | 0.18058 (9) | 0.0663 (8) | |
H1'A | 0.4397 | 0.8047 | 0.2018 | 0.080* | |
H1'B | 0.5442 | 0.6924 | 0.1890 | 0.080* | |
C2' | 0.3601 (4) | 0.7249 (4) | 0.15240 (10) | 0.0828 (10) | |
H2'A | 0.3262 | 0.6405 | 0.1567 | 0.099* | |
H2'B | 0.2713 | 0.7797 | 0.1537 | 0.099* | |
C3' | 0.4403 (3) | 0.7360 (3) | 0.11593 (9) | 0.0614 (7) | |
N4' | 0.5691 (3) | 0.8034 (2) | 0.12056 (6) | 0.0530 (5) | |
C5' | 0.6762 (4) | 0.8299 (3) | 0.09050 (7) | 0.0583 (7) | |
H5'A | 0.7141 | 0.9140 | 0.0931 | 0.070* | |
H5'B | 0.6214 | 0.8244 | 0.0672 | 0.070* | |
C6' | 0.8127 (4) | 0.7416 (3) | 0.08984 (7) | 0.0617 (7) | |
H6'A | 0.7732 | 0.6575 | 0.0902 | 0.074* | |
H6'B | 0.8673 | 0.7527 | 0.0666 | 0.074* | |
C7' | 0.9266 (3) | 0.7555 (3) | 0.12079 (8) | 0.0612 (7) | |
H7'A | 0.9796 | 0.8341 | 0.1181 | 0.073* | |
H7'B | 1.0035 | 0.6904 | 0.1188 | 0.073* | |
C8' | 0.8538 (3) | 0.7500 (3) | 0.15902 (7) | 0.0513 (6) | |
H8'A | 0.7900 | 0.6752 | 0.1609 | 0.062* | |
C9' | 0.7566 (3) | 0.8615 (2) | 0.16928 (7) | 0.0477 (6) | |
H9'A | 0.8006 | 0.9338 | 0.1567 | 0.057* | |
C9A' | 0.5859 (3) | 0.8521 (2) | 0.15822 (7) | 0.0514 (6) | |
H9AB | 0.5397 | 0.9349 | 0.1592 | 0.062* | |
C10' | 0.7858 (4) | 0.8767 (3) | 0.21083 (7) | 0.0547 (6) | |
H10B | 0.7249 | 0.8140 | 0.2239 | 0.066* | |
C11' | 0.9562 (4) | 0.8396 (3) | 0.21282 (8) | 0.0596 (7) | |
C12' | 1.0220 (4) | 0.8032 (3) | 0.24871 (9) | 0.0681 (8) | |
H12B | 0.9854 | 0.7383 | 0.2632 | 0.082* | |
C13' | 1.1403 (4) | 0.8751 (4) | 0.25765 (9) | 0.0762 (9) | |
C14' | 1.1569 (4) | 0.9670 (4) | 0.22847 (11) | 0.0810 (10) | |
C15' | 1.2413 (6) | 0.8803 (6) | 0.29114 (12) | 0.1187 (17) | |
H15D | 1.2159 | 0.8129 | 0.3073 | 0.178* | |
H15E | 1.2251 | 0.9574 | 0.3038 | 0.178* | |
H15F | 1.3478 | 0.8739 | 0.2838 | 0.178* | |
C16' | 0.7445 (6) | 1.0033 (4) | 0.22668 (10) | 0.0858 (11) | |
H16C | 0.8230 | 1.0618 | 0.2188 | 0.103* | |
H16D | 0.6473 | 1.0294 | 0.2158 | 0.103* | |
C17' | 0.7300 (10) | 1.0123 (6) | 0.26649 (16) | 0.157 (3) | |
H17D | 0.7049 | 1.0960 | 0.2732 | 0.236* | |
H17E | 0.8260 | 0.9891 | 0.2779 | 0.236* | |
H17F | 0.6493 | 0.9579 | 0.2748 | 0.236* | |
O1 | −0.0168 (3) | 0.5873 (2) | 0.01640 (7) | 0.0779 (6) | |
O2 | −0.5911 (2) | 0.31108 (18) | −0.03973 (5) | 0.0528 (4) | |
O3 | −0.6774 (2) | 0.36455 (16) | −0.09836 (5) | 0.0564 (5) | |
O4 | −0.8917 (3) | 0.3499 (2) | −0.13237 (6) | 0.0742 (6) | |
C1 | −0.1041 (3) | 0.3420 (3) | −0.04581 (9) | 0.0591 (7) | |
H1A | −0.1618 | 0.2844 | −0.0305 | 0.071* | |
H1B | −0.0599 | 0.2974 | −0.0665 | 0.071* | |
C2 | 0.0210 (3) | 0.4071 (3) | −0.02354 (9) | 0.0595 (7) | |
H2A | 0.0564 | 0.3556 | −0.0033 | 0.071* | |
H2B | 0.1087 | 0.4283 | −0.0390 | 0.071* | |
C3 | −0.0582 (3) | 0.5213 (3) | −0.00945 (8) | 0.0545 (6) | |
N4 | −0.1863 (2) | 0.5401 (2) | −0.02972 (6) | 0.0515 (5) | |
C5 | −0.2939 (3) | 0.6411 (3) | −0.02211 (9) | 0.0610 (7) | |
H5A | −0.3387 | 0.6697 | −0.0452 | 0.073* | |
H5B | −0.2378 | 0.7097 | −0.0111 | 0.073* | |
C6 | −0.4218 (3) | 0.6016 (3) | 0.00366 (9) | 0.0610 (7) | |
H6A | −0.4763 | 0.6751 | 0.0120 | 0.073* | |
H6B | −0.3755 | 0.5633 | 0.0252 | 0.073* | |
C7 | −0.5400 (3) | 0.5116 (3) | −0.01270 (8) | 0.0544 (7) | |
H7A | −0.6114 | 0.4867 | 0.0066 | 0.065* | |
H7B | −0.5992 | 0.5543 | −0.0316 | 0.065* | |
C8 | −0.4694 (3) | 0.3976 (2) | −0.02940 (7) | 0.0437 (5) | |
H8A | −0.4020 | 0.3583 | −0.0111 | 0.052* | |
C9 | −0.3777 (3) | 0.4177 (2) | −0.06508 (7) | 0.0457 (6) | |
H9A | −0.4245 | 0.4879 | −0.0781 | 0.055* | |
C9A | −0.2073 (3) | 0.4480 (2) | −0.05906 (7) | 0.0493 (6) | |
H9AA | −0.1645 | 0.4812 | −0.0821 | 0.059* | |
C10 | −0.4123 (3) | 0.3013 (3) | −0.08746 (7) | 0.0529 (6) | |
H10A | −0.3504 | 0.2334 | −0.0772 | 0.063* | |
C11 | −0.5799 (3) | 0.2795 (2) | −0.07690 (7) | 0.0500 (6) | |
C12 | −0.6566 (3) | 0.1570 (2) | −0.08304 (8) | 0.0576 (7) | |
H12A | −0.6192 | 0.0819 | −0.0742 | 0.069* | |
C13 | −0.7846 (3) | 0.1697 (2) | −0.10266 (7) | 0.0536 (6) | |
C14 | −0.7969 (3) | 0.3011 (2) | −0.11322 (7) | 0.0523 (6) | |
C15 | −0.9043 (4) | 0.0787 (3) | −0.11504 (10) | 0.0691 (8) | |
H15A | −0.8783 | −0.0022 | −0.1059 | 0.104* | |
H15B | −0.9079 | 0.0770 | −0.1416 | 0.104* | |
H15C | −1.0036 | 0.1028 | −0.1056 | 0.104* | |
C16 | −0.3768 (5) | 0.3105 (4) | −0.12896 (9) | 0.0858 (11) | |
H16A | −0.4557 | 0.3617 | −0.1404 | 0.103* | |
H16B | −0.2787 | 0.3530 | −0.1319 | 0.103* | |
C17 | −0.3690 (9) | 0.1966 (7) | −0.14874 (13) | 0.158 (3) | |
H17A | −0.3458 | 0.2129 | −0.1742 | 0.238* | |
H17B | −0.4666 | 0.1546 | −0.1470 | 0.238* | |
H17C | −0.2892 | 0.1455 | −0.1383 | 0.238* | |
O1W | 0.1914 (4) | 0.5014 (3) | 0.06972 (10) | 0.1025 (9) | |
H1WA | 0.128 (6) | 0.529 (6) | 0.0552 (14) | 0.154* | |
H1WB | 0.256 (6) | 0.553 (5) | 0.0765 (16) | 0.154* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1' | 0.0742 (14) | 0.0875 (15) | 0.0837 (14) | −0.0204 (13) | −0.0242 (12) | −0.0017 (13) |
O2' | 0.0611 (12) | 0.0800 (13) | 0.0653 (11) | 0.0199 (11) | −0.0105 (10) | −0.0137 (10) |
O3' | 0.0698 (14) | 0.0857 (15) | 0.0821 (14) | −0.0206 (13) | −0.0149 (12) | 0.0174 (13) |
O4' | 0.091 (2) | 0.112 (2) | 0.160 (3) | −0.042 (2) | −0.032 (2) | 0.014 (2) |
C1' | 0.0494 (15) | 0.082 (2) | 0.0676 (16) | −0.0068 (16) | 0.0064 (14) | 0.0036 (15) |
C2' | 0.0488 (17) | 0.102 (3) | 0.098 (2) | −0.0145 (18) | 0.0042 (17) | 0.005 (2) |
C3' | 0.0522 (15) | 0.0579 (16) | 0.0743 (18) | −0.0020 (14) | −0.0125 (15) | 0.0050 (14) |
N4' | 0.0514 (12) | 0.0490 (11) | 0.0584 (12) | −0.0085 (10) | −0.0059 (10) | 0.0023 (10) |
C5' | 0.0723 (18) | 0.0559 (15) | 0.0468 (13) | −0.0160 (15) | −0.0060 (13) | 0.0078 (11) |
C6' | 0.0733 (19) | 0.0614 (16) | 0.0504 (13) | −0.0130 (16) | 0.0116 (14) | −0.0043 (12) |
C7' | 0.0525 (15) | 0.0713 (17) | 0.0600 (15) | −0.0030 (14) | 0.0116 (14) | −0.0109 (14) |
C8' | 0.0498 (14) | 0.0514 (13) | 0.0527 (13) | 0.0004 (12) | −0.0008 (12) | −0.0050 (11) |
C9' | 0.0488 (14) | 0.0443 (13) | 0.0499 (12) | −0.0011 (11) | 0.0021 (11) | −0.0011 (10) |
C9A' | 0.0452 (14) | 0.0500 (14) | 0.0590 (13) | 0.0032 (12) | −0.0023 (11) | −0.0015 (12) |
C10' | 0.0597 (16) | 0.0550 (15) | 0.0495 (13) | −0.0005 (14) | 0.0021 (12) | −0.0034 (12) |
C11' | 0.0627 (17) | 0.0599 (17) | 0.0562 (14) | −0.0039 (15) | −0.0038 (13) | −0.0001 (13) |
C12' | 0.078 (2) | 0.0655 (18) | 0.0606 (15) | −0.0022 (17) | −0.0118 (15) | 0.0012 (14) |
C13' | 0.077 (2) | 0.081 (2) | 0.0708 (18) | −0.0006 (19) | −0.0223 (17) | −0.0044 (17) |
C14' | 0.063 (2) | 0.083 (2) | 0.097 (3) | −0.0072 (19) | −0.0125 (18) | −0.006 (2) |
C15' | 0.115 (4) | 0.149 (4) | 0.092 (3) | −0.008 (3) | −0.049 (3) | −0.011 (3) |
C16' | 0.113 (3) | 0.071 (2) | 0.073 (2) | 0.017 (2) | 0.002 (2) | −0.0231 (16) |
C17' | 0.199 (7) | 0.147 (5) | 0.126 (4) | 0.035 (5) | 0.007 (5) | −0.050 (4) |
O1 | 0.0652 (13) | 0.0750 (14) | 0.0937 (15) | −0.0013 (12) | −0.0213 (12) | −0.0129 (12) |
O2 | 0.0478 (10) | 0.0594 (10) | 0.0513 (9) | −0.0123 (9) | 0.0013 (8) | −0.0019 (8) |
O3 | 0.0622 (11) | 0.0405 (9) | 0.0666 (10) | −0.0009 (9) | −0.0147 (9) | 0.0045 (8) |
O4 | 0.0718 (13) | 0.0615 (12) | 0.0894 (14) | −0.0005 (11) | −0.0272 (12) | 0.0171 (11) |
C1 | 0.0472 (14) | 0.0535 (15) | 0.0766 (17) | 0.0057 (13) | 0.0086 (14) | −0.0014 (13) |
C2 | 0.0387 (13) | 0.0603 (16) | 0.0796 (17) | 0.0042 (12) | 0.0029 (13) | 0.0114 (14) |
C3 | 0.0432 (13) | 0.0489 (14) | 0.0715 (16) | −0.0047 (12) | −0.0008 (13) | 0.0056 (13) |
N4 | 0.0423 (11) | 0.0430 (11) | 0.0694 (13) | 0.0004 (10) | −0.0003 (10) | 0.0047 (10) |
C5 | 0.0508 (14) | 0.0412 (13) | 0.0910 (19) | 0.0048 (12) | −0.0096 (15) | −0.0014 (13) |
C6 | 0.0551 (16) | 0.0517 (15) | 0.0762 (17) | 0.0089 (13) | −0.0022 (14) | −0.0142 (14) |
C7 | 0.0451 (14) | 0.0561 (15) | 0.0621 (15) | 0.0054 (12) | 0.0043 (12) | −0.0048 (12) |
C8 | 0.0390 (12) | 0.0449 (12) | 0.0471 (12) | −0.0019 (11) | −0.0027 (10) | 0.0023 (10) |
C9 | 0.0458 (12) | 0.0465 (13) | 0.0449 (12) | 0.0005 (11) | 0.0003 (11) | 0.0059 (10) |
C9A | 0.0465 (13) | 0.0511 (14) | 0.0504 (13) | −0.0016 (12) | 0.0086 (11) | 0.0050 (11) |
C10 | 0.0575 (15) | 0.0511 (13) | 0.0501 (13) | 0.0047 (13) | 0.0009 (12) | −0.0020 (11) |
C11 | 0.0543 (15) | 0.0437 (13) | 0.0520 (13) | 0.0039 (12) | −0.0072 (12) | 0.0008 (11) |
C12 | 0.0657 (17) | 0.0416 (13) | 0.0656 (15) | 0.0039 (13) | −0.0101 (14) | 0.0035 (12) |
C13 | 0.0589 (15) | 0.0397 (13) | 0.0621 (14) | 0.0011 (12) | −0.0061 (13) | −0.0011 (11) |
C14 | 0.0556 (15) | 0.0461 (13) | 0.0553 (13) | 0.0025 (13) | −0.0057 (13) | 0.0019 (11) |
C15 | 0.0646 (18) | 0.0528 (16) | 0.090 (2) | −0.0069 (15) | −0.0156 (17) | −0.0028 (15) |
C16 | 0.102 (3) | 0.097 (3) | 0.0583 (17) | 0.010 (2) | 0.0197 (19) | −0.0043 (17) |
C17 | 0.192 (6) | 0.202 (6) | 0.081 (3) | 0.027 (6) | 0.009 (4) | −0.047 (4) |
O1W | 0.104 (2) | 0.0833 (18) | 0.120 (2) | −0.0337 (17) | −0.0342 (18) | 0.0232 (15) |
O1'—C3' | 1.233 (4) | O2—C11 | 1.390 (3) |
O2'—C11' | 1.396 (4) | O2—C8 | 1.455 (3) |
O2'—C8' | 1.454 (3) | O3—C14 | 1.351 (3) |
O3'—C14' | 1.354 (4) | O3—C11 | 1.468 (3) |
O3'—C11' | 1.453 (4) | O4—C14 | 1.195 (3) |
O4'—C14' | 1.195 (5) | C1—C2 | 1.521 (4) |
C1'—C9A' | 1.525 (4) | C1—C9A | 1.528 (4) |
C1'—C2' | 1.542 (5) | C1—H1A | 0.9700 |
C1'—H1'A | 0.9700 | C1—H1B | 0.9700 |
C1'—H1'B | 0.9700 | C2—C3 | 1.499 (4) |
C2'—C3' | 1.495 (5) | C2—H2A | 0.9700 |
C2'—H2'A | 0.9700 | C2—H2B | 0.9700 |
C2'—H2'B | 0.9700 | C3—N4 | 1.343 (4) |
C3'—N4' | 1.340 (4) | N4—C5 | 1.460 (3) |
N4'—C5' | 1.456 (4) | N4—C9A | 1.466 (3) |
N4'—C9A' | 1.467 (3) | C5—C6 | 1.507 (4) |
C5'—C6' | 1.517 (4) | C5—H5A | 0.9700 |
C5'—H5'A | 0.9700 | C5—H5B | 0.9700 |
C5'—H5'B | 0.9700 | C6—C7 | 1.529 (4) |
C6'—C7' | 1.498 (4) | C6—H6A | 0.9700 |
C6'—H6'A | 0.9700 | C6—H6B | 0.9700 |
C6'—H6'B | 0.9700 | C7—C8 | 1.501 (4) |
C7'—C8' | 1.520 (4) | C7—H7A | 0.9700 |
C7'—H7'A | 0.9700 | C7—H7B | 0.9700 |
C7'—H7'B | 0.9700 | C8—C9 | 1.530 (3) |
C8'—C9' | 1.515 (4) | C8—H8A | 0.9800 |
C8'—H8'A | 0.9800 | C9—C10 | 1.524 (4) |
C9'—C9A' | 1.532 (4) | C9—C9A | 1.524 (4) |
C9'—C10' | 1.533 (3) | C9—H9A | 0.9800 |
C9'—H9'A | 0.9800 | C9A—H9AA | 0.9800 |
C9A'—H9AB | 0.9800 | C10—C11 | 1.517 (4) |
C10'—C16' | 1.525 (4) | C10—C16 | 1.535 (4) |
C10'—C11' | 1.528 (4) | C10—H10A | 0.9800 |
C10'—H10B | 0.9800 | C11—C12 | 1.496 (4) |
C11'—C12' | 1.470 (4) | C12—C13 | 1.321 (4) |
C12'—C13' | 1.324 (5) | C12—H12A | 0.9300 |
C12'—H12B | 0.9300 | C13—C14 | 1.473 (4) |
C13'—C14' | 1.456 (5) | C13—C15 | 1.496 (4) |
C13'—C15' | 1.494 (5) | C15—H15A | 0.9600 |
C15'—H15D | 0.9600 | C15—H15B | 0.9600 |
C15'—H15E | 0.9600 | C15—H15C | 0.9600 |
C15'—H15F | 0.9600 | C16—C17 | 1.425 (7) |
C16'—C17' | 1.449 (6) | C16—H16A | 0.9700 |
C16'—H16C | 0.9700 | C16—H16B | 0.9700 |
C16'—H16D | 0.9700 | C17—H17A | 0.9600 |
C17'—H17D | 0.9600 | C17—H17B | 0.9600 |
C17'—H17E | 0.9600 | C17—H17C | 0.9600 |
C17'—H17F | 0.9600 | O1W—H1WA | 0.81 (2) |
O1—C3 | 1.229 (4) | O1W—H1WB | 0.82 (2) |
C11'—O2'—C8' | 110.8 (2) | C14—O3—C11 | 109.35 (19) |
C14'—O3'—C11' | 108.9 (3) | C2—C1—C9A | 103.5 (2) |
C9A'—C1'—C2' | 102.6 (3) | C2—C1—H1A | 111.1 |
C9A'—C1'—H1'A | 111.2 | C9A—C1—H1A | 111.1 |
C2'—C1'—H1'A | 111.2 | C2—C1—H1B | 111.1 |
C9A'—C1'—H1'B | 111.2 | C9A—C1—H1B | 111.1 |
C2'—C1'—H1'B | 111.2 | H1A—C1—H1B | 109.0 |
H1'A—C1'—H1'B | 109.2 | C3—C2—C1 | 103.6 (2) |
C3'—C2'—C1' | 103.7 (2) | C3—C2—H2A | 111.0 |
C3'—C2'—H2'A | 111.0 | C1—C2—H2A | 111.0 |
C1'—C2'—H2'A | 111.0 | C3—C2—H2B | 111.0 |
C3'—C2'—H2'B | 111.0 | C1—C2—H2B | 111.0 |
C1'—C2'—H2'B | 111.0 | H2A—C2—H2B | 109.0 |
H2'A—C2'—H2'B | 109.0 | O1—C3—N4 | 124.6 (3) |
O1'—C3'—N4' | 124.5 (3) | O1—C3—C2 | 127.0 (3) |
O1'—C3'—C2' | 126.9 (3) | N4—C3—C2 | 108.4 (2) |
N4'—C3'—C2' | 108.6 (3) | C3—N4—C5 | 122.3 (2) |
C3'—N4'—C5' | 122.8 (2) | C3—N4—C9A | 113.2 (2) |
C3'—N4'—C9A' | 113.1 (2) | C5—N4—C9A | 124.4 (2) |
C5'—N4'—C9A' | 124.0 (2) | N4—C5—C6 | 111.9 (2) |
N4'—C5'—C6' | 112.5 (2) | N4—C5—H5A | 109.2 |
N4'—C5'—H5'A | 109.1 | C6—C5—H5A | 109.2 |
C6'—C5'—H5'A | 109.1 | N4—C5—H5B | 109.2 |
N4'—C5'—H5'B | 109.1 | C6—C5—H5B | 109.2 |
C6'—C5'—H5'B | 109.1 | H5A—C5—H5B | 107.9 |
H5'A—C5'—H5'B | 107.8 | C5—C6—C7 | 115.5 (2) |
C7'—C6'—C5' | 115.9 (2) | C5—C6—H6A | 108.4 |
C7'—C6'—H6'A | 108.3 | C7—C6—H6A | 108.4 |
C5'—C6'—H6'A | 108.3 | C5—C6—H6B | 108.4 |
C7'—C6'—H6'B | 108.3 | C7—C6—H6B | 108.4 |
C5'—C6'—H6'B | 108.3 | H6A—C6—H6B | 107.5 |
H6'A—C6'—H6'B | 107.4 | C8—C7—C6 | 113.9 (2) |
C6'—C7'—C8' | 113.8 (2) | C8—C7—H7A | 108.8 |
C6'—C7'—H7'A | 108.8 | C6—C7—H7A | 108.8 |
C8'—C7'—H7'A | 108.8 | C8—C7—H7B | 108.8 |
C6'—C7'—H7'B | 108.8 | C6—C7—H7B | 108.8 |
C8'—C7'—H7'B | 108.8 | H7A—C7—H7B | 107.7 |
H7'A—C7'—H7'B | 107.7 | O2—C8—C7 | 109.7 (2) |
O2'—C8'—C9' | 105.0 (2) | O2—C8—C9 | 104.40 (18) |
O2'—C8'—C7' | 109.5 (2) | C7—C8—C9 | 115.7 (2) |
C9'—C8'—C7' | 114.9 (2) | O2—C8—H8A | 108.9 |
O2'—C8'—H8'A | 109.1 | C7—C8—H8A | 108.9 |
C9'—C8'—H8'A | 109.1 | C9—C8—H8A | 108.9 |
C7'—C8'—H8'A | 109.1 | C10—C9—C9A | 116.2 (2) |
C8'—C9'—C9A' | 114.6 (2) | C10—C9—C8 | 103.3 (2) |
C8'—C9'—C10' | 103.5 (2) | C9A—C9—C8 | 114.2 (2) |
C9A'—C9'—C10' | 114.9 (2) | C10—C9—H9A | 107.5 |
C8'—C9'—H9'A | 107.8 | C9A—C9—H9A | 107.5 |
C9A'—C9'—H9'A | 107.8 | C8—C9—H9A | 107.5 |
C10'—C9'—H9'A | 107.8 | N4—C9A—C9 | 111.6 (2) |
N4'—C9A'—C1' | 102.2 (2) | N4—C9A—C1 | 102.1 (2) |
N4'—C9A'—C9' | 111.2 (2) | C9—C9A—C1 | 116.6 (2) |
C1'—C9A'—C9' | 116.9 (2) | N4—C9A—H9AA | 108.7 |
N4'—C9A'—H9AB | 108.7 | C9—C9A—H9AA | 108.7 |
C1'—C9A'—H9AB | 108.7 | C1—C9A—H9AA | 108.7 |
C9'—C9A'—H9AB | 108.7 | C11—C10—C9 | 100.5 (2) |
C16'—C10'—C11' | 116.3 (3) | C11—C10—C16 | 116.5 (3) |
C16'—C10'—C9' | 115.2 (3) | C9—C10—C16 | 115.3 (3) |
C11'—C10'—C9' | 100.2 (2) | C11—C10—H10A | 108.0 |
C16'—C10'—H10B | 108.2 | C9—C10—H10A | 108.0 |
C11'—C10'—H10B | 108.2 | C16—C10—H10A | 108.0 |
C9'—C10'—H10B | 108.2 | O2—C11—O3 | 108.5 (2) |
O2'—C11'—O3' | 108.5 (2) | O2—C11—C12 | 109.3 (2) |
O2'—C11'—C12' | 110.7 (3) | O3—C11—C12 | 102.7 (2) |
O3'—C11'—C12' | 103.6 (2) | O2—C11—C10 | 105.8 (2) |
O2'—C11'—C10' | 105.7 (2) | O3—C11—C10 | 108.5 (2) |
O3'—C11'—C10' | 109.1 (2) | C12—C11—C10 | 121.6 (2) |
C12'—C11'—C10' | 119.0 (3) | C13—C12—C11 | 111.0 (2) |
C13'—C12'—C11' | 110.9 (3) | C13—C12—H12A | 124.5 |
C13'—C12'—H12B | 124.5 | C11—C12—H12A | 124.5 |
C11'—C12'—H12B | 124.5 | C12—C13—C14 | 107.5 (2) |
C12'—C13'—C14' | 107.4 (3) | C12—C13—C15 | 132.2 (3) |
C12'—C13'—C15' | 132.1 (4) | C14—C13—C15 | 120.4 (2) |
C14'—C13'—C15' | 120.3 (4) | O4—C14—O3 | 122.0 (2) |
O4'—C14'—O3' | 121.9 (4) | O4—C14—C13 | 128.7 (3) |
O4'—C14'—C13' | 128.9 (4) | O3—C14—C13 | 109.3 (2) |
O3'—C14'—C13' | 109.1 (3) | C13—C15—H15A | 109.5 |
C13'—C15'—H15D | 109.5 | C13—C15—H15B | 109.5 |
C13'—C15'—H15E | 109.5 | H15A—C15—H15B | 109.5 |
H15D—C15'—H15E | 109.5 | C13—C15—H15C | 109.5 |
C13'—C15'—H15F | 109.5 | H15A—C15—H15C | 109.5 |
H15D—C15'—H15F | 109.5 | H15B—C15—H15C | 109.5 |
H15E—C15'—H15F | 109.5 | C17—C16—C10 | 116.4 (4) |
C17'—C16'—C10' | 117.0 (4) | C17—C16—H16A | 108.2 |
C17'—C16'—H16C | 108.0 | C10—C16—H16A | 108.2 |
C10'—C16'—H16C | 108.0 | C17—C16—H16B | 108.2 |
C17'—C16'—H16D | 108.0 | C10—C16—H16B | 108.2 |
C10'—C16'—H16D | 108.0 | H16A—C16—H16B | 107.3 |
H16C—C16'—H16D | 107.3 | C16—C17—H17A | 109.5 |
C16'—C17'—H17D | 109.5 | C16—C17—H17B | 109.5 |
C16'—C17'—H17E | 109.5 | H17A—C17—H17B | 109.5 |
H17D—C17'—H17E | 109.5 | C16—C17—H17C | 109.5 |
C16'—C17'—H17F | 109.5 | H17A—C17—H17C | 109.5 |
H17D—C17'—H17F | 109.5 | H17B—C17—H17C | 109.5 |
H17E—C17'—H17F | 109.5 | H1WA—O1W—H1WB | 113 (6) |
C11—O2—C8 | 110.84 (19) | ||
C9A'—C1'—C2'—C3' | 28.3 (4) | C9A—C1—C2—C3 | 28.4 (3) |
C1'—C2'—C3'—O1' | 163.4 (3) | C1—C2—C3—O1 | 161.7 (3) |
C1'—C2'—C3'—N4' | −15.8 (4) | C1—C2—C3—N4 | −17.6 (3) |
O1'—C3'—N4'—C5' | −0.5 (5) | O1—C3—N4—C5 | −2.0 (4) |
C2'—C3'—N4'—C5' | 178.8 (3) | C2—C3—N4—C5 | 177.3 (2) |
O1'—C3'—N4'—C9A' | 176.5 (3) | O1—C3—N4—C9A | 179.5 (3) |
C2'—C3'—N4'—C9A' | −4.2 (3) | C2—C3—N4—C9A | −1.3 (3) |
C3'—N4'—C5'—C6' | −97.1 (3) | C3—N4—C5—C6 | −91.8 (3) |
C9A'—N4'—C5'—C6' | 86.2 (3) | C9A—N4—C5—C6 | 86.6 (3) |
N4'—C5'—C6'—C7' | −69.8 (3) | N4—C5—C6—C7 | −70.3 (3) |
C5'—C6'—C7'—C8' | 53.7 (4) | C5—C6—C7—C8 | 53.6 (3) |
C11'—O2'—C8'—C9' | 1.6 (3) | C11—O2—C8—C7 | 124.5 (2) |
C11'—O2'—C8'—C7' | 125.5 (3) | C11—O2—C8—C9 | 0.0 (3) |
C6'—C7'—C8'—O2' | 171.3 (3) | C6—C7—C8—O2 | 172.6 (2) |
C6'—C7'—C8'—C9' | −70.9 (3) | C6—C7—C8—C9 | −69.7 (3) |
O2'—C8'—C9'—C9A' | −150.5 (2) | O2—C8—C9—C10 | −23.5 (2) |
C7'—C8'—C9'—C9A' | 89.2 (3) | C7—C8—C9—C10 | −144.1 (2) |
O2'—C8'—C9'—C10' | −24.5 (3) | O2—C8—C9—C9A | −150.7 (2) |
C7'—C8'—C9'—C10' | −144.9 (2) | C7—C8—C9—C9A | 88.7 (3) |
C3'—N4'—C9A'—C1' | 22.5 (3) | C3—N4—C9A—C9 | 144.6 (2) |
C5'—N4'—C9A'—C1' | −160.5 (2) | C5—N4—C9A—C9 | −33.9 (3) |
C3'—N4'—C9A'—C9' | 147.9 (2) | C3—N4—C9A—C1 | 19.3 (3) |
C5'—N4'—C9A'—C9' | −35.1 (3) | C5—N4—C9A—C1 | −159.2 (2) |
C2'—C1'—C9A'—N4' | −30.1 (3) | C10—C9—C9A—N4 | −164.9 (2) |
C2'—C1'—C9A'—C9' | −151.7 (3) | C8—C9—C9A—N4 | −44.8 (3) |
C8'—C9'—C9A'—N4' | −44.1 (3) | C10—C9—C9A—C1 | −48.2 (3) |
C10'—C9'—C9A'—N4' | −163.9 (2) | C8—C9—C9A—C1 | 72.0 (3) |
C8'—C9'—C9A'—C1' | 72.6 (3) | C2—C1—C9A—N4 | −28.6 (3) |
C10'—C9'—C9A'—C1' | −47.2 (3) | C2—C1—C9A—C9 | −150.5 (2) |
C8'—C9'—C10'—C16' | 161.7 (3) | C9A—C9—C10—C11 | 162.2 (2) |
C9A'—C9'—C10'—C16' | −72.5 (4) | C8—C9—C10—C11 | 36.3 (2) |
C8'—C9'—C10'—C11' | 36.2 (3) | C9A—C9—C10—C16 | −71.6 (3) |
C9A'—C9'—C10'—C11' | 161.9 (2) | C8—C9—C10—C16 | 162.5 (3) |
C8'—O2'—C11'—O3' | −94.7 (3) | C8—O2—C11—O3 | −92.3 (2) |
C8'—O2'—C11'—C12' | 152.3 (3) | C8—O2—C11—C12 | 156.4 (2) |
C8'—O2'—C11'—C10' | 22.2 (3) | C8—O2—C11—C10 | 24.0 (3) |
C14'—O3'—C11'—O2' | −118.9 (3) | C14—O3—C11—O2 | −113.1 (2) |
C14'—O3'—C11'—C12' | −1.3 (4) | C14—O3—C11—C12 | 2.5 (3) |
C14'—O3'—C11'—C10' | 126.3 (3) | C14—O3—C11—C10 | 132.4 (2) |
C16'—C10'—C11'—O2' | −160.9 (3) | C9—C10—C11—O2 | −37.4 (2) |
C9'—C10'—C11'—O2' | −36.0 (3) | C16—C10—C11—O2 | −162.7 (3) |
C16'—C10'—C11'—O3' | −44.4 (3) | C9—C10—C11—O3 | 78.8 (2) |
C9'—C10'—C11'—O3' | 80.5 (3) | C16—C10—C11—O3 | −46.4 (3) |
C16'—C10'—C11'—C12' | 74.0 (4) | C9—C10—C11—C12 | −162.6 (2) |
C9'—C10'—C11'—C12' | −161.1 (3) | C16—C10—C11—C12 | 72.2 (4) |
O2'—C11'—C12'—C13' | 115.6 (3) | O2—C11—C12—C13 | 111.1 (3) |
O3'—C11'—C12'—C13' | −0.4 (4) | O3—C11—C12—C13 | −4.0 (3) |
C10'—C11'—C12'—C13' | −121.7 (3) | C10—C11—C12—C13 | −125.3 (3) |
C11'—C12'—C13'—C14' | 1.9 (4) | C11—C12—C13—C14 | 3.8 (3) |
C11'—C12'—C13'—C15' | 177.3 (4) | C11—C12—C13—C15 | −177.6 (3) |
C11'—O3'—C14'—O4' | −175.9 (4) | C11—O3—C14—O4 | −179.0 (3) |
C11'—O3'—C14'—C13' | 2.5 (4) | C11—O3—C14—C13 | −0.5 (3) |
C12'—C13'—C14'—O4' | 175.5 (5) | C12—C13—C14—O4 | 176.3 (3) |
C15'—C13'—C14'—O4' | −0.6 (7) | C15—C13—C14—O4 | −2.5 (5) |
C12'—C13'—C14'—O3' | −2.7 (4) | C12—C13—C14—O3 | −2.1 (3) |
C15'—C13'—C14'—O3' | −178.8 (4) | C15—C13—C14—O3 | 179.1 (2) |
C11'—C10'—C16'—C17' | −79.4 (6) | C11—C10—C16—C17 | −78.4 (5) |
C9'—C10'—C16'—C17' | 163.8 (5) | C9—C10—C16—C17 | 164.2 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O1 | 0.81 | 1.98 | 2.796 (3) | 175 |
O1W—H1WB···O1′ | 0.83 | 1.97 | 2.784 (3) | 171 |
C5′—H5′A···O3i | 0.97 | 2.58 | 3.545 (4) | 178 |
C10—H10A···O1Wii | 0.98 | 2.58 | 3.450 (4) | 149 |
Symmetry codes: (i) x+3/2, −y+3/2, −z; (ii) x−1/2, −y+1/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C17H23NO4·0.5H2O |
Mr | 314.37 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 298 |
a, b, c (Å) | 8.6412 (2), 10.7998 (2), 36.1685 (7) |
V (Å3) | 3375.36 (12) |
Z | 8 |
Radiation type | Cu Kα |
µ (mm−1) | 0.73 |
Crystal size (mm) | 0.42 × 0.30 × 0.27 |
Data collection | |
Diffractometer | Oxford Diffraction Gemini S Ultra CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2004) |
Tmin, Tmax | 0.822, 1.000 |
No. of measured, independent and observed [I > 2˘I)] reflections | 8573, 4837, 4514 |
Rint | 0.021 |
(sin θ/λ)max (Å−1) | 0.576 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.142, 1.06 |
No. of reflections | 4837 |
No. of parameters | 412 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.51, −0.24 |
Absolute structure | Flack (1983), 1743 Friedel pairs |
Absolute structure parameter | −0.1 (2) |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP (Bruker, 1998), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O1 | 0.814 | 1.984 | 2.796 (3) | 174.8 |
O1W—H1WB···O1' | 0.825 | 1.966 | 2.784 (3) | 171.4 |
C5'—H5'A···O3i | 0.970 | 2.575 | 3.545 (4) | 178.0 |
C10—H10A···O1Wii | 0.980 | 2.576 | 3.450 (4) | 148.5 |
Symmetry codes: (i) x+3/2, −y+3/2, −z; (ii) x−1/2, −y+1/2, −z. |
Acknowledgements
This work was supported by a grant from the New Century Excellent Talents Scheme of the Ministry of Education (grant No. NCET-08–0612), the Guangdong High Level Talent Scheme (to RWJ) and the Fundamental Research Funds for the Central Universities (grant No. 21609202)
References
Bruker (1998). SMART, SAINT and XP. Bruker AXS Inc., Madison, Wisconsin,USA. Google Scholar
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The title compound 2(C17H23NO4) . H2O (Fig. 1) is a hydrate of tuberostemoamide which has been isolated from the roots of Stemona tuberosa. This plant is a rich source of Stemona alkaloids (Pilli & Ferreira de Oliveira, 2000; Jiang et al., 2006) with anti-tussive activity (Xu et al., 2010). Although the phytochemical properties of tuberostemoamide have been studied Hu et al., 2009); Lin et al., 2008) the crystal structure has not previously been reported. In this study, we report the structure of tuberostemoamide hemihydrate.
The asymmetric unit contains two molecules of tuberostemoamide [(1) and (2)] with similar conformations and one water molecule (Fig. 1). The tuberostemoamide molecule is composed of one seven-membered ring (A) and three five-membered rings (B, C and D). Ring A exists in a chair conformation. Ring B exists in an envelope conformation with C1 displaced by 0.4695 Å from the least-squares plane of the remaining four atoms (C2, C3, N4 and C9A), and the corresponding value for molecule (2) is 0.4868 Å. Ring C also exhibits an envelope conformation with C10 displaced by 0.5930 Å from the least-squares plane of the remaining four atoms (C8, C8, O2 and C11), and the corresponding value for molecule (2) is 0.5886 Å. Ring D is planar with a mean deviation 0.0142 Å for (1) and 0.0101 Å for (2). The dihedral angles between the planes of the rings C and D in molecule (1) is 75.1 (3)° and 74.5 (3)° for molecule (2). The absolute configuration for the compound was not determined with certainty in this analysis.
The water molecule links the tuberostemoamide molecules through O—H···O(ketone) hydrogen bonds (Table 1) with only weak intermolecular C—H···O interactions present, involving both the water molecule and a hetero-ring ether O-acceptor (Fig. 2).