organic compounds
Bis{2,6-bis[(2-hydroxy-5-methylphenyl)iminomethyl]pyridine} monohydrate
aDepartment of Chemistry, Loughborough University, Loughborough LE11 3TU, England
*Correspondence e-mail: m.kose@lboro.ac.uk
The title compound, 2C21H19N3O2·H2O, was synthesized by a Schiff base condensation of 2,6-diformylpyridine with 2-amino-4-methylphenol in ethanol. In the crystal, two molecules of 2,6-bis[(2-hydroxy-5-methylphenyl)iminomethyl]pyridine dimerize via hydrogen bonding to a water molecule, which lies on a twofold axis. There are also intramolecular phenol–imine hydrogen bonds. The dimers are further linked via π–π (phenyl–pyridine) [centroid–centroid distance = 3.707 (2) Å] and π–π edge-to-edge [3.392 (2) Å] interactions. The dihedral angles between the central ring and the two pendant rings are 11.46 (8) and 2.06 (8)° while the pendant rings make a dihedral angle of 10.14 (8)°.
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 1998); cell SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536811045399/aa2032sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811045399/aa2032Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536811045399/aa2032Isup3.cml
A solution of 2,6-diformylpyridine (0.405 g, 3 mmol) in ethanol (15 ml) was added dropwise to an ethanolic solution (30 ml) of 2-amino-4-methylphenol (0.740 g, 6 mmol). A yellow colour appeared and a precipitate was formed in a few minutes. The mixture was stirred for two hours, and then the yellow product was collected by filtration, washed with ethanol-diethylether mixture (1:1) and dried in air. Yield: 0.852 g, 80%, m.p 173–177 C°. Analysis Calc. for C21H19N3O2.0.5(H2O): C, 71.17; H, 5.69; N, 11.86%. Found: C, 71.03; H, 5.65; N, 11.70%.
H atoms bonded to C atoms were inserted at calculated positions with C—H distances of 0.95 and 0.99 Å for non-saturated and saturated C atoms, respectively. They were refined using a riding model with Uiso(H) = 1.2Ueq(C). The H-atoms bonded to O1, O2 and O3 are taken directly from the difference Fourier and were refined with temperature factors riding on the carrier atom.
The molecules crystallize as dimers, assembled by hydrogen bonding around a water molecule. The water molecule sits on a twofold axis and makes four strong hydrogen bonds, as donor to the pyridine nitrogen atoms, and as acceptor from the phenol groups (Table 1). There are also weaker hydrogen bond interactions with one of the imine nitrogen atoms of each molecule. Additionally, there are phenol-imine intramolecular hydrogen bonds in each molecule. The azomethine (C8═N1 and C14═N3) linkage distances are 1.278 (14) and 1.273 (14) Å respectively and within the normal C═N values.
The geometry is cis at the C8═N1 imine group and trans at C14═N3 group. The molecule is close to planar with interplanar angles between the pyridine and phenol groups, 11.46 (8)° and 2.06 (8)° for the rings containing O1 and O2 respectively.
The hydrogen bond geometry at the water molecule is approximately tetrahedral but the angle between the two H-bonded Schiff base molecules is not close to the ideal 90°; the angle between the N2/O3/O2 plane and its equivalent under twofold rotation is 60.52 (4)°. This is possibly a consequence of the intermolecular interactions in the lattice. The Schiff base molecules show two sets of interactions with neighbouring dimeric units. On the more open face (that nearest to the H-bonded phenol of the second molecule), there is a π-π interaction involving the pyridine ring and the phenolimine group H-bonded to central water molecule. The average interplanar distance between this section and its neighbour under 1 - x, -y, -z is 3.354 (1) Å and phenol-pyridine centroid-centroid distance is 3.707 (2) Å. On the other face (partially blocked by the non-bonded phenol of the second molecule), there is a less extensive edge to edge interaction C10 to C11 of a neighbouring dimer under 1 - x, 1 - y, -z is 3.392 (2) Å. These result in columns formed by alternating π-π and edge to edge interactions extending through the lattice.
For related structures, see: Gonzalez et al. (2008); Sun et al. (2006).
Data collection: APEX2 (Bruker, 1998); cell
SAINT (Bruker, 1998); data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).2C21H19N3O2·H2O | F(000) = 1496 |
Mr = 708.80 | Dx = 1.346 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 5957 reflections |
a = 23.8510 (13) Å | θ = 2.3–29.8° |
b = 12.9688 (7) Å | µ = 0.09 mm−1 |
c = 12.3835 (7) Å | T = 150 K |
β = 114.077 (1)° | Block, yellow |
V = 3497.2 (3) Å3 | 0.60 × 0.28 × 0.11 mm |
Z = 4 |
Bruker APEXII CCD diffractometer | 5005 independent reflections |
Radiation source: fine-focus sealed tube | 3919 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
φ and ω scans | θmax = 29.8°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | h = −33→33 |
Tmin = 0.947, Tmax = 0.991 | k = −17→18 |
19364 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0642P)2 + 1.5272P] where P = (Fo2 + 2Fc2)/3 |
5005 reflections | (Δ/σ)max = 0.001 |
251 parameters | Δρmax = 0.36 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
2C21H19N3O2·H2O | V = 3497.2 (3) Å3 |
Mr = 708.80 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 23.8510 (13) Å | µ = 0.09 mm−1 |
b = 12.9688 (7) Å | T = 150 K |
c = 12.3835 (7) Å | 0.60 × 0.28 × 0.11 mm |
β = 114.077 (1)° |
Bruker APEXII CCD diffractometer | 5005 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | 3919 reflections with I > 2σ(I) |
Tmin = 0.947, Tmax = 0.991 | Rint = 0.024 |
19364 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.124 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.36 e Å−3 |
5005 reflections | Δρmin = −0.23 e Å−3 |
251 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.33231 (5) | 0.57957 (7) | 0.14787 (9) | 0.0363 (2) | |
H1A | 0.3535 (9) | 0.5552 (15) | 0.1120 (17) | 0.054* | |
C1 | 0.32840 (6) | 0.50007 (9) | 0.21682 (10) | 0.0263 (2) | |
C2 | 0.29313 (6) | 0.51152 (9) | 0.28174 (11) | 0.0295 (3) | |
H2 | 0.2724 | 0.5747 | 0.2792 | 0.035* | |
C3 | 0.28826 (5) | 0.43063 (9) | 0.35006 (11) | 0.0285 (2) | |
H3 | 0.2641 | 0.4391 | 0.3944 | 0.034* | |
C4 | 0.31806 (5) | 0.33642 (9) | 0.35549 (10) | 0.0259 (2) | |
C5 | 0.30934 (6) | 0.24734 (10) | 0.42542 (12) | 0.0344 (3) | |
H5A | 0.3220 | 0.1832 | 0.4000 | 0.052* | |
H5B | 0.2660 | 0.2426 | 0.4119 | 0.052* | |
H5C | 0.3344 | 0.2584 | 0.5098 | 0.052* | |
C6 | 0.35360 (5) | 0.32612 (9) | 0.29095 (10) | 0.0243 (2) | |
H6 | 0.3744 | 0.2630 | 0.2942 | 0.029* | |
C7 | 0.35935 (5) | 0.40707 (9) | 0.22099 (9) | 0.0232 (2) | |
N1 | 0.39157 (5) | 0.40486 (7) | 0.14721 (8) | 0.0250 (2) | |
C8 | 0.42258 (5) | 0.32597 (9) | 0.14243 (9) | 0.0231 (2) | |
H8 | 0.4261 | 0.2691 | 0.1931 | 0.028* | |
C9 | 0.45300 (5) | 0.32110 (8) | 0.06030 (9) | 0.0209 (2) | |
C10 | 0.44553 (5) | 0.39831 (9) | −0.02331 (10) | 0.0250 (2) | |
H10 | 0.4218 | 0.4580 | −0.0268 | 0.030* | |
C11 | 0.47345 (6) | 0.38588 (9) | −0.10081 (10) | 0.0274 (2) | |
H11 | 0.4695 | 0.4372 | −0.1582 | 0.033* | |
C12 | 0.50726 (5) | 0.29722 (9) | −0.09334 (10) | 0.0251 (2) | |
H12 | 0.5265 | 0.2866 | −0.1461 | 0.030* | |
C13 | 0.51268 (5) | 0.22380 (8) | −0.00723 (9) | 0.0205 (2) | |
N2 | 0.48638 (4) | 0.23536 (7) | 0.06979 (8) | 0.02020 (19) | |
C14 | 0.54842 (5) | 0.12966 (8) | −0.00076 (9) | 0.0219 (2) | |
H14 | 0.5582 | 0.1125 | −0.0657 | 0.026* | |
N3 | 0.56667 (4) | 0.07051 (7) | 0.08909 (8) | 0.02191 (19) | |
C15 | 0.60324 (5) | −0.01660 (8) | 0.09325 (9) | 0.0199 (2) | |
C16 | 0.63466 (5) | −0.03133 (8) | 0.02040 (9) | 0.0210 (2) | |
H16 | 0.6319 | 0.0200 | −0.0362 | 0.025* | |
C17 | 0.66968 (5) | −0.11873 (8) | 0.02855 (9) | 0.0218 (2) | |
C18 | 0.70282 (5) | −0.13137 (9) | −0.05144 (10) | 0.0276 (2) | |
H18A | 0.6833 | −0.0877 | −0.1215 | 0.041* | |
H18B | 0.7008 | −0.2036 | −0.0758 | 0.041* | |
H18C | 0.7459 | −0.1109 | −0.0090 | 0.041* | |
C19 | 0.67339 (5) | −0.19289 (8) | 0.11334 (10) | 0.0242 (2) | |
H19 | 0.6969 | −0.2536 | 0.1200 | 0.029* | |
C20 | 0.64359 (5) | −0.17978 (9) | 0.18780 (10) | 0.0240 (2) | |
H20 | 0.6471 | −0.2309 | 0.2452 | 0.029* | |
C21 | 0.60848 (5) | −0.09168 (8) | 0.17862 (9) | 0.0212 (2) | |
O2 | 0.57884 (4) | −0.08313 (7) | 0.25167 (7) | 0.02766 (19) | |
H2A | 0.5591 (7) | −0.0281 (13) | 0.2415 (13) | 0.033* | |
O3 | 0.5000 | 0.07316 (9) | 0.2500 | 0.0278 (3) | |
H3D | 0.4959 (8) | 0.1100 (13) | 0.1942 (14) | 0.042* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0520 (6) | 0.0268 (4) | 0.0359 (5) | 0.0110 (4) | 0.0239 (4) | 0.0038 (4) |
C1 | 0.0301 (6) | 0.0243 (5) | 0.0224 (5) | 0.0038 (4) | 0.0088 (4) | −0.0028 (4) |
C2 | 0.0304 (6) | 0.0275 (6) | 0.0300 (6) | 0.0074 (5) | 0.0119 (5) | −0.0056 (5) |
C3 | 0.0263 (5) | 0.0334 (6) | 0.0272 (6) | 0.0027 (5) | 0.0122 (5) | −0.0071 (5) |
C4 | 0.0242 (5) | 0.0290 (6) | 0.0251 (5) | 0.0010 (4) | 0.0106 (4) | −0.0033 (4) |
C5 | 0.0364 (7) | 0.0364 (7) | 0.0386 (7) | 0.0026 (5) | 0.0236 (6) | 0.0021 (5) |
C6 | 0.0242 (5) | 0.0247 (5) | 0.0241 (5) | 0.0043 (4) | 0.0099 (4) | −0.0023 (4) |
C7 | 0.0237 (5) | 0.0249 (5) | 0.0205 (5) | 0.0026 (4) | 0.0084 (4) | −0.0036 (4) |
N1 | 0.0278 (5) | 0.0258 (5) | 0.0226 (5) | 0.0032 (4) | 0.0115 (4) | −0.0022 (4) |
C8 | 0.0235 (5) | 0.0252 (5) | 0.0210 (5) | 0.0021 (4) | 0.0097 (4) | −0.0007 (4) |
C9 | 0.0203 (5) | 0.0229 (5) | 0.0193 (5) | 0.0002 (4) | 0.0077 (4) | −0.0021 (4) |
C10 | 0.0268 (5) | 0.0223 (5) | 0.0249 (5) | 0.0021 (4) | 0.0098 (4) | 0.0009 (4) |
C11 | 0.0315 (6) | 0.0270 (5) | 0.0241 (5) | 0.0007 (4) | 0.0117 (5) | 0.0056 (4) |
C12 | 0.0270 (5) | 0.0302 (6) | 0.0199 (5) | 0.0012 (4) | 0.0115 (4) | 0.0021 (4) |
C13 | 0.0207 (5) | 0.0242 (5) | 0.0168 (4) | 0.0003 (4) | 0.0079 (4) | −0.0007 (4) |
N2 | 0.0205 (4) | 0.0226 (4) | 0.0182 (4) | 0.0003 (3) | 0.0086 (3) | −0.0012 (3) |
C14 | 0.0232 (5) | 0.0267 (5) | 0.0185 (5) | 0.0021 (4) | 0.0110 (4) | −0.0009 (4) |
N3 | 0.0248 (4) | 0.0221 (4) | 0.0224 (4) | 0.0006 (3) | 0.0133 (4) | −0.0004 (3) |
C15 | 0.0224 (5) | 0.0201 (5) | 0.0182 (5) | 0.0001 (4) | 0.0093 (4) | −0.0011 (4) |
C16 | 0.0231 (5) | 0.0215 (5) | 0.0203 (5) | 0.0003 (4) | 0.0109 (4) | 0.0008 (4) |
C17 | 0.0217 (5) | 0.0225 (5) | 0.0223 (5) | −0.0011 (4) | 0.0102 (4) | −0.0031 (4) |
C18 | 0.0295 (6) | 0.0278 (6) | 0.0307 (6) | 0.0032 (5) | 0.0176 (5) | −0.0011 (4) |
C19 | 0.0235 (5) | 0.0218 (5) | 0.0268 (5) | 0.0022 (4) | 0.0097 (4) | 0.0000 (4) |
C20 | 0.0263 (5) | 0.0232 (5) | 0.0215 (5) | −0.0003 (4) | 0.0086 (4) | 0.0034 (4) |
C21 | 0.0230 (5) | 0.0246 (5) | 0.0171 (5) | −0.0023 (4) | 0.0093 (4) | −0.0008 (4) |
O2 | 0.0370 (5) | 0.0287 (4) | 0.0239 (4) | 0.0042 (4) | 0.0191 (4) | 0.0038 (3) |
O3 | 0.0386 (7) | 0.0270 (6) | 0.0266 (6) | 0.000 | 0.0223 (5) | 0.000 |
O1—C1 | 1.3660 (15) | C11—H11 | 0.9500 |
O1—H1A | 0.86 (2) | C12—C13 | 1.3957 (15) |
C1—C2 | 1.3884 (16) | C12—H12 | 0.9500 |
C1—C7 | 1.4040 (15) | C13—N2 | 1.3467 (13) |
C2—C3 | 1.3821 (18) | C13—C14 | 1.4725 (15) |
C2—H2 | 0.9500 | C14—N3 | 1.2731 (14) |
C3—C4 | 1.4012 (16) | C14—H14 | 0.9500 |
C3—H3 | 0.9500 | N3—C15 | 1.4153 (13) |
C4—C6 | 1.3885 (15) | C15—C16 | 1.4013 (14) |
C4—C5 | 1.5083 (17) | C15—C21 | 1.4048 (14) |
C5—H5A | 0.9800 | C16—C17 | 1.3870 (15) |
C5—H5B | 0.9800 | C16—H16 | 0.9500 |
C5—H5C | 0.9800 | C17—C19 | 1.3998 (15) |
C6—C7 | 1.4030 (16) | C17—C18 | 1.5072 (15) |
C6—H6 | 0.9500 | C18—H18A | 0.9800 |
C7—N1 | 1.4139 (14) | C18—H18B | 0.9800 |
N1—C8 | 1.2778 (14) | C18—H18C | 0.9800 |
C8—C9 | 1.4721 (15) | C19—C20 | 1.3853 (15) |
C8—H8 | 0.9500 | C19—H19 | 0.9500 |
C9—N2 | 1.3445 (14) | C20—C21 | 1.3934 (15) |
C9—C10 | 1.3985 (15) | C20—H20 | 0.9500 |
C10—C11 | 1.3827 (16) | C21—O2 | 1.3610 (13) |
C10—H10 | 0.9500 | O2—H2A | 0.836 (17) |
C11—C12 | 1.3857 (16) | O3—H3D | 0.812 (16) |
C1—O1—H1A | 104.5 (13) | C12—C11—H11 | 120.6 |
O1—C1—C2 | 119.56 (10) | C11—C12—C13 | 119.14 (10) |
O1—C1—C7 | 120.15 (10) | C11—C12—H12 | 120.4 |
C2—C1—C7 | 120.28 (11) | C13—C12—H12 | 120.4 |
C3—C2—C1 | 119.70 (10) | N2—C13—C12 | 122.72 (10) |
C3—C2—H2 | 120.2 | N2—C13—C14 | 118.71 (9) |
C1—C2—H2 | 120.2 | C12—C13—C14 | 118.57 (9) |
C2—C3—C4 | 121.56 (11) | C9—N2—C13 | 117.41 (9) |
C2—C3—H3 | 119.2 | N3—C14—C13 | 122.07 (9) |
C4—C3—H3 | 119.2 | N3—C14—H14 | 119.0 |
C6—C4—C3 | 118.25 (11) | C13—C14—H14 | 119.0 |
C6—C4—C5 | 121.09 (10) | C14—N3—C15 | 119.91 (9) |
C3—C4—C5 | 120.61 (10) | C16—C15—C21 | 118.89 (9) |
C4—C5—H5A | 109.5 | C16—C15—N3 | 124.68 (9) |
C4—C5—H5B | 109.5 | C21—C15—N3 | 116.42 (9) |
H5A—C5—H5B | 109.5 | C17—C16—C15 | 121.93 (10) |
C4—C5—H5C | 109.5 | C17—C16—H16 | 119.0 |
H5A—C5—H5C | 109.5 | C15—C16—H16 | 119.0 |
H5B—C5—H5C | 109.5 | C16—C17—C19 | 117.90 (10) |
C4—C6—C7 | 121.31 (10) | C16—C17—C18 | 120.18 (10) |
C4—C6—H6 | 119.3 | C19—C17—C18 | 121.92 (10) |
C7—C6—H6 | 119.3 | C17—C18—H18A | 109.5 |
C6—C7—C1 | 118.89 (10) | C17—C18—H18B | 109.5 |
C6—C7—N1 | 126.84 (10) | H18A—C18—H18B | 109.5 |
C1—C7—N1 | 114.20 (10) | C17—C18—H18C | 109.5 |
C8—N1—C7 | 121.58 (10) | H18A—C18—H18C | 109.5 |
N1—C8—C9 | 121.61 (10) | H18B—C18—H18C | 109.5 |
N1—C8—H8 | 119.2 | C20—C19—C17 | 121.49 (10) |
C9—C8—H8 | 119.2 | C20—C19—H19 | 119.3 |
N2—C9—C10 | 123.29 (10) | C17—C19—H19 | 119.3 |
N2—C9—C8 | 114.60 (9) | C19—C20—C21 | 120.05 (10) |
C10—C9—C8 | 122.07 (10) | C19—C20—H20 | 120.0 |
C11—C10—C9 | 118.58 (10) | C21—C20—H20 | 120.0 |
C11—C10—H10 | 120.7 | O2—C21—C20 | 118.06 (9) |
C9—C10—H10 | 120.7 | O2—C21—C15 | 122.20 (10) |
C10—C11—C12 | 118.84 (10) | C20—C21—C15 | 119.72 (9) |
C10—C11—H11 | 120.6 | C21—O2—H2A | 112.5 (10) |
O1—C1—C2—C3 | 178.93 (11) | C11—C12—C13—C14 | 179.63 (10) |
C7—C1—C2—C3 | −0.42 (18) | C10—C9—N2—C13 | −1.22 (16) |
C1—C2—C3—C4 | −0.16 (18) | C8—C9—N2—C13 | 176.55 (9) |
C2—C3—C4—C6 | 0.66 (18) | C12—C13—N2—C9 | 1.05 (15) |
C2—C3—C4—C5 | −176.69 (12) | C14—C13—N2—C9 | −178.70 (9) |
C3—C4—C6—C7 | −0.61 (17) | N2—C13—C14—N3 | −15.80 (16) |
C5—C4—C6—C7 | 176.73 (11) | C12—C13—C14—N3 | 164.44 (11) |
C4—C6—C7—C1 | 0.06 (17) | C13—C14—N3—C15 | −177.17 (9) |
C4—C6—C7—N1 | −176.84 (11) | C14—N3—C15—C16 | 16.85 (16) |
O1—C1—C7—C6 | −178.88 (10) | C14—N3—C15—C21 | −164.27 (10) |
C2—C1—C7—C6 | 0.47 (17) | C21—C15—C16—C17 | 1.35 (16) |
O1—C1—C7—N1 | −1.61 (16) | N3—C15—C16—C17 | −179.79 (10) |
C2—C1—C7—N1 | 177.74 (10) | C15—C16—C17—C19 | −0.49 (16) |
C6—C7—N1—C8 | −3.83 (18) | C15—C16—C17—C18 | −179.90 (10) |
C1—C7—N1—C8 | 179.15 (10) | C16—C17—C19—C20 | −0.50 (16) |
C7—N1—C8—C9 | 176.17 (10) | C18—C17—C19—C20 | 178.90 (10) |
N1—C8—C9—N2 | 176.83 (10) | C17—C19—C20—C21 | 0.60 (17) |
N1—C8—C9—C10 | −5.37 (17) | C19—C20—C21—O2 | 178.48 (10) |
N2—C9—C10—C11 | 0.45 (17) | C19—C20—C21—C15 | 0.29 (16) |
C8—C9—C10—C11 | −177.16 (10) | C16—C15—C21—O2 | −179.34 (10) |
C9—C10—C11—C12 | 0.52 (17) | N3—C15—C21—O2 | 1.71 (15) |
C10—C11—C12—C13 | −0.68 (17) | C16—C15—C21—C20 | −1.24 (15) |
C11—C12—C13—N2 | −0.12 (17) | N3—C15—C21—C20 | 179.82 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O3 | 0.836 (17) | 1.960 (17) | 2.7592 (12) | 159.6 (15) |
O2—H2A···N3 | 0.836 (17) | 2.347 (15) | 2.7624 (12) | 111.3 (12) |
O1—H1A···N1 | 0.86 (2) | 2.120 (19) | 2.6722 (13) | 121.7 (16) |
O3—H3D···N2 | 0.812 (16) | 2.187 (16) | 2.9865 (12) | 168.0 (16) |
O3—H3D···N3 | 0.812 (16) | 2.569 (16) | 3.0142 (9) | 115.9 (14) |
Experimental details
Crystal data | |
Chemical formula | 2C21H19N3O2·H2O |
Mr | 708.80 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 150 |
a, b, c (Å) | 23.8510 (13), 12.9688 (7), 12.3835 (7) |
β (°) | 114.077 (1) |
V (Å3) | 3497.2 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.60 × 0.28 × 0.11 |
Data collection | |
Diffractometer | Bruker APEXII CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2008) |
Tmin, Tmax | 0.947, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19364, 5005, 3919 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.700 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.124, 1.06 |
No. of reflections | 5005 |
No. of parameters | 251 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.36, −0.23 |
Computer programs: APEX2 (Bruker, 1998), SAINT (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O3 | 0.836 (17) | 1.960 (17) | 2.7592 (12) | 159.6 (15) |
O2—H2A···N3 | 0.836 (17) | 2.347 (15) | 2.7624 (12) | 111.3 (12) |
O1—H1A···N1 | 0.86 (2) | 2.120 (19) | 2.6722 (13) | 121.7 (16) |
O3—H3D···N2 | 0.812 (16) | 2.187 (16) | 2.9865 (12) | 168.0 (16) |
O3—H3D···N3 | 0.812 (16) | 2.569 (16) | 3.0142 (9) | 115.9 (14) |
Acknowledgements
We are grateful to the Turkish Government for the award of a postgraduate scholarship (to MK)
References
Bruker (1998). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Gonzalez, A., Gomez, E., Cortes-Lozada, A., Hernandez, S., Ramirez-Apan, T. & Nieto-Camacho, A. (2008). Chem. Pharm. Bull. 57, 5–15. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sun, X. X., Qi, C. M., Ma, S. L., Huang, H. B., Zhu, W. & Liu, Y. C. (2006). Inorg. Chem. Commun. 9, 911–914. Web of Science CSD CrossRef CAS Google Scholar
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The molecules crystallize as dimers, assembled by hydrogen bonding around a water molecule. The water molecule sits on a twofold axis and makes four strong hydrogen bonds, as donor to the pyridine nitrogen atoms, and as acceptor from the phenol groups (Table 1). There are also weaker hydrogen bond interactions with one of the imine nitrogen atoms of each molecule. Additionally, there are phenol-imine intramolecular hydrogen bonds in each molecule. The azomethine (C8═N1 and C14═N3) linkage distances are 1.278 (14) and 1.273 (14) Å respectively and within the normal C═N values.
The geometry is cis at the C8═N1 imine group and trans at C14═N3 group. The molecule is close to planar with interplanar angles between the pyridine and phenol groups, 11.46 (8)° and 2.06 (8)° for the rings containing O1 and O2 respectively.
The hydrogen bond geometry at the water molecule is approximately tetrahedral but the angle between the two H-bonded Schiff base molecules is not close to the ideal 90°; the angle between the N2/O3/O2 plane and its equivalent under twofold rotation is 60.52 (4)°. This is possibly a consequence of the intermolecular interactions in the lattice. The Schiff base molecules show two sets of interactions with neighbouring dimeric units. On the more open face (that nearest to the H-bonded phenol of the second molecule), there is a π-π interaction involving the pyridine ring and the phenolimine group H-bonded to central water molecule. The average interplanar distance between this section and its neighbour under symmetry operation 1 - x, -y, -z is 3.354 (1) Å and phenol-pyridine centroid-centroid distance is 3.707 (2) Å. On the other face (partially blocked by the non-bonded phenol of the second molecule), there is a less extensive edge to edge interaction C10 to C11 of a neighbouring dimer under symmetry operation 1 - x, 1 - y, -z is 3.392 (2) Å. These result in columns formed by alternating π-π and edge to edge interactions extending through the lattice.