metal-organic compounds
trans-Bromido(pyrimidinyl-κC5)bis(triphenylphosphane-κP)palladium(II)
aDepartment of Hair Styling and Design, Hungkuang University, Shalu 433, Taichung, Taiwan, bDepartment of Applied Cosmetology, National Tainan Institute of Nursing, Tainan City 700, Taiwan, cInstrumentation Center, College of Science, National Taiwan University, Taipei 106, Taiwan, and dDepartment of Applied Cosmetology, Hungkuang University, Shalu 433, Taichung, Taiwan
*Correspondence e-mail: ghlee@ntu.edu.tw, khyih@sunrise.hk.edu.tw
In the title complex, [PdBr(C4H3N2)(C18H15P)2], the geometry around the Pd atom is distorted square-planar with the Pd atom displaced by 0.0334 (14) Å from the BrP2C plane. The two Ph3P ligands are in trans positions, defining a P—Pd—P angle of 171.78 (5)°, while the pyrimidinyl and bromide ligands are trans to each other [C—Pd—Br = 174.63 (14)°].
Related literature
For reactions in organic synthesis that form C—C bonds, see: Steffen et al. (2005); Beeby et al. (2004); Chin et al. (1988); Dobrzynski & Angelici (1975). For Pd—C(carbene) bond lengths, see: Cardin et al. (1972) and for Pd—Br bond lengths, see: Yih & Lee (2008); Yih et al. (2009). For related structures of pyrimidinyl–metal complexes, see: Hong et al. (2002).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536811049348/bg2434sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536811049348/bg2434Isup2.hkl
The synthesis of the title compound (I) was carried out as follows. CH2Cl2 (20 ml) was added to a flask (100 ml) containing Pd(PPh3)4 (1.155 g, 1.0 mmol) and 5-Bromopyrimidine (0.191 g, 1.2 mmol) at ambient temperature. The mixture was stirred for about 1 day. The solvent was concentrated to 10 ml, and 20 ml of diethyl ether was added to the solution. The yellow solids were formed which were isolated by filtration (G4), washed with n-hexane (2 × 10 ml) and subsequently dried under vacuum yielding 0.774 g (97%) of [Pd(PPh3)2(C4H3N2)Br], (I). Spectroscopic data: 31P{1H} NMR: δ 24.2 (s, PPh3). 1H NMR: δ 7.27–7.70 (m, 30H, 2PPh3), 7.75 (s, 2H, 2,6-H of pyrimidinyl), 8.05 (s, 1H, 4-H of pyrimidinyl). 13C{1H} NMR: δ 128.3 (m, o-C of Ph), 130.2 (m, p-C of Ph), 134.5 (m, m-C of Ph), 151.9 (s, 4-C of pyrimidinyl), 154.4 (t, 1-C of pyrimidinyl, 2JP—C = 5.91 Hz), 161.4 (s, 2,6-C of pyrimidinyl). MS (FAB, NBA, m/z): 789 [M+], 709 [M+ - Br], 630 [M+ - Br - pyrimidinyl]. Anal. Calcd. for C40H33BrN2P2Pd: C, 60.82; H, 4.21; N, 3.55. Found: C, 60.94; H, 4.31; N, 3.18.
H atoms were positioned geometrically and refined using a riding model, with C—H = 0.95Å and with Uiso(H) = 1.2 times Ueq(C).
Palladium-complexes catalyzed formation of C—C bonds are some of the most important reactions in organic synthesis (Dobrzynski & Angelici, 1975). Intramolecular
of Pd—N binuclear complex [Pd(µ-C9H6N)(µ-dppm)]2(Cl)2 yielding the organic compound 2,2'-biquinoline has been reported (Chin et al., 1988). A pyridyl-bridged palladium complex was reported as an effective precatalyst for the Suzuki cross-coupling reactions of a variety of organoboronic acids and aryl bromides (Beeby, et al., 2004). Pyrimidinyl nickel complexes have been used as catalysts for C—C coupling reactions (Steffen et al., 2005). To our knowledge, no 3,5-pyrimidinyl palladium has been described so far.To synthesize the pyrimidinyl metal compound, [Pd(PPh3)4] was used to react with 5-bromopyrimidine in dichloromethane at room temperature. As a result, a two triphenylphosphine displaced complex [Pd(Br)(C4H3N2)(PPh3)2] was isolated with 97% yield. The X-ray
analysis has been carried out to provide structural information.The molecular structure of the title compound is shown in Fig. 1. The palladium atom has a distorted square planar environment, being displaced by 0.0396Å from the least-squares plane and with all angles about the Pd center within ± 2.6° of 90°. The Pd—C1 bond distance, 2.000 (5) Å, is longer than other PdII-carbon(carbonyl) distances, and similar to Pd—C(carbene) distances (Cardin et al., 1972). Two PPh3 ligands are in trans position: P1—Pd—P2, 171.78 (5)°, while the pyrimidinyl ligand and bromide are trans to each other: C1—Pd—Br, 174.63 (14)°. The phosphorus atoms approach tetrahedral geometry as expected. The largest angular deviation from ideal tetrahedral geometry is 119.31 (16)° for C5—P1—Pd. The mean Pd—N distance (> 4.25Å) indicates no bonding interaction between the nitrogen atom and the palladium metal atom. Within the pyrimidinyl ligand itself, the geometry is consistent with a significant partial double bond character in the C—C and C—N bonds. The C—N bond distances (1.315 (7) ~1.351 (6) Å) are typical for a C—N bond having partial double bond character and are certainly much shorter than the normal C—N (1.47 Å) single bond. The Pd—C1 (2.000 (5) Å), Pd—P (2.3175 (13), 2.3325 (13) Å) and Pd—Br (2.4907 (6) Å) lengths are in agreement with reported values (Yih et al., 2008, 2009).
TThe 31P{1H} NMR spectra of (I) shows a singlet resonances at δ 24.2. In the 1H NMR spectra, the 2,6-H and 4-H protons of the pyrimidinyl group exhibit two singlet resonances at δ 7.75 and at δ 8.05. The 13C{1H} NMR spectra of (I) reveals two singlets at δ 151.9 and at δ 161.4 which are assigned to the 4-C and 2,6-C carbon atom of the pyrimidinyl group. There is a triplet resonance at δ 154.4 (2JP—C = 5.91 Hz), which is assigned to the 1-C of pyrimidinyl group. In the FAB mass spectra, base peak with the typical Pd isotope distribution is in agreement with the [M+] molecular mass of (I).
For reactions in organic synthesis that form C—C bonds, see: Steffen et al. (2005); Beeby et al. (2004); Chin et al. (1988); Dobrzynski & Angelici (1975). For Pd—C(carbene) bond lengths, see: Cardin et al. (1972) and for Pd—Br bond lengths, see: Yih & Lee (2008); Yih et al. (2009). For related structures of pyrimidinyl–metal complexes, see: Hong et al. (2002).
Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[PdBr(C4H3N2)(C18H15P)2] | F(000) = 1592 |
Mr = 789.93 | Dx = 1.549 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1845 reflections |
a = 15.0953 (10) Å | θ = 2.7–21.4° |
b = 12.0379 (8) Å | µ = 1.85 mm−1 |
c = 19.8066 (13) Å | T = 150 K |
β = 109.7481 (13)° | Block, colourless |
V = 3387.5 (4) Å3 | 0.35 × 0.20 × 0.12 mm |
Z = 4 |
Bruker SMART APEX CCD area-detector diffractometer | 7764 independent reflections |
Radiation source: fine-focus sealed tube | 5553 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.079 |
ω scans | θmax = 27.5°, θmin = 1.4° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −19→19 |
Tmin = 0.563, Tmax = 0.808 | k = −15→11 |
19582 measured reflections | l = −25→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.132 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0532P)2] where P = (Fo2 + 2Fc2)/3 |
7764 reflections | (Δ/σ)max < 0.001 |
415 parameters | Δρmax = 0.87 e Å−3 |
0 restraints | Δρmin = −0.98 e Å−3 |
[PdBr(C4H3N2)(C18H15P)2] | V = 3387.5 (4) Å3 |
Mr = 789.93 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 15.0953 (10) Å | µ = 1.85 mm−1 |
b = 12.0379 (8) Å | T = 150 K |
c = 19.8066 (13) Å | 0.35 × 0.20 × 0.12 mm |
β = 109.7481 (13)° |
Bruker SMART APEX CCD area-detector diffractometer | 7764 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 5553 reflections with I > 2σ(I) |
Tmin = 0.563, Tmax = 0.808 | Rint = 0.079 |
19582 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | 0 restraints |
wR(F2) = 0.132 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.87 e Å−3 |
7764 reflections | Δρmin = −0.98 e Å−3 |
415 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Pd | 0.22914 (2) | 0.92402 (3) | 0.419184 (18) | 0.01789 (11) | |
Br | 0.12499 (4) | 0.89245 (4) | 0.29305 (3) | 0.03315 (16) | |
P1 | 0.20103 (9) | 1.11231 (10) | 0.39822 (6) | 0.0196 (3) | |
P2 | 0.23800 (8) | 0.73438 (10) | 0.44478 (6) | 0.0193 (3) | |
N1 | 0.3674 (4) | 0.9979 (4) | 0.6421 (2) | 0.0379 (12) | |
N2 | 0.4851 (3) | 0.9595 (4) | 0.5908 (3) | 0.0399 (12) | |
C1 | 0.3223 (3) | 0.9531 (4) | 0.5168 (2) | 0.0203 (10) | |
C2 | 0.4173 (3) | 0.9424 (4) | 0.5278 (3) | 0.0278 (12) | |
H2 | 0.4355 | 0.9215 | 0.4881 | 0.033* | |
C3 | 0.4553 (4) | 0.9840 (5) | 0.6442 (3) | 0.0414 (15) | |
H3 | 0.5026 | 0.9928 | 0.6899 | 0.050* | |
C4 | 0.3027 (4) | 0.9829 (4) | 0.5762 (3) | 0.0267 (11) | |
H4 | 0.2385 | 0.9941 | 0.5712 | 0.032* | |
C5 | 0.2605 (3) | 1.2118 (4) | 0.4690 (2) | 0.0223 (10) | |
C6 | 0.3583 (3) | 1.2133 (4) | 0.4915 (3) | 0.0260 (11) | |
H6 | 0.3907 | 1.1635 | 0.4708 | 0.031* | |
C7 | 0.4086 (4) | 1.2873 (4) | 0.5441 (3) | 0.0307 (12) | |
H7 | 0.4754 | 1.2876 | 0.5596 | 0.037* | |
C8 | 0.3617 (4) | 1.3609 (5) | 0.5739 (3) | 0.0326 (13) | |
H8 | 0.3965 | 1.4115 | 0.6100 | 0.039* | |
C9 | 0.2654 (4) | 1.3611 (4) | 0.5517 (3) | 0.0316 (13) | |
H9 | 0.2334 | 1.4118 | 0.5722 | 0.038* | |
C10 | 0.2140 (4) | 1.2861 (4) | 0.4986 (3) | 0.0277 (11) | |
H10 | 0.1472 | 1.2864 | 0.4830 | 0.033* | |
C11 | 0.0758 (3) | 1.1278 (4) | 0.3800 (2) | 0.0203 (10) | |
C12 | 0.0392 (3) | 1.1108 (4) | 0.4351 (3) | 0.0257 (11) | |
H12 | 0.0809 | 1.1015 | 0.4829 | 0.031* | |
C13 | −0.0575 (4) | 1.1071 (4) | 0.4209 (3) | 0.0306 (12) | |
H13 | −0.0818 | 1.0973 | 0.4589 | 0.037* | |
C14 | −0.1174 (4) | 1.1178 (4) | 0.3517 (3) | 0.0307 (12) | |
H14 | −0.1835 | 1.1135 | 0.3417 | 0.037* | |
C15 | −0.0831 (4) | 1.1347 (4) | 0.2967 (3) | 0.0316 (12) | |
H15 | −0.1255 | 1.1432 | 0.2490 | 0.038* | |
C16 | 0.0137 (4) | 1.1395 (4) | 0.3100 (3) | 0.0282 (12) | |
H16 | 0.0371 | 1.1507 | 0.2717 | 0.034* | |
C17 | 0.2291 (3) | 1.1726 (4) | 0.3237 (2) | 0.0220 (10) | |
C18 | 0.1997 (4) | 1.2801 (4) | 0.3004 (3) | 0.0343 (13) | |
H18 | 0.1589 | 1.3190 | 0.3196 | 0.041* | |
C19 | 0.2303 (5) | 1.3305 (5) | 0.2486 (3) | 0.0438 (16) | |
H19 | 0.2102 | 1.4036 | 0.2326 | 0.053* | |
C20 | 0.2897 (4) | 1.2739 (6) | 0.2209 (3) | 0.0441 (16) | |
H20 | 0.3108 | 1.3083 | 0.1859 | 0.053* | |
C21 | 0.3181 (4) | 1.1688 (6) | 0.2435 (3) | 0.0430 (15) | |
H21 | 0.3588 | 1.1304 | 0.2240 | 0.052* | |
C22 | 0.2884 (4) | 1.1175 (5) | 0.2944 (3) | 0.0310 (12) | |
H22 | 0.3087 | 1.0441 | 0.3095 | 0.037* | |
C23 | 0.3086 (3) | 0.6555 (4) | 0.4031 (3) | 0.0200 (10) | |
C24 | 0.3176 (3) | 0.6939 (4) | 0.3389 (3) | 0.0234 (11) | |
H24 | 0.2923 | 0.7641 | 0.3201 | 0.028* | |
C25 | 0.3631 (3) | 0.6297 (4) | 0.3030 (3) | 0.0272 (11) | |
H25 | 0.3677 | 0.6554 | 0.2590 | 0.033* | |
C26 | 0.4019 (3) | 0.5289 (4) | 0.3304 (3) | 0.0284 (12) | |
H26 | 0.4325 | 0.4850 | 0.3050 | 0.034* | |
C27 | 0.3962 (4) | 0.4918 (4) | 0.3948 (3) | 0.0300 (12) | |
H27 | 0.4246 | 0.4233 | 0.4145 | 0.036* | |
C28 | 0.3497 (4) | 0.5535 (4) | 0.4304 (3) | 0.0274 (11) | |
H28 | 0.3453 | 0.5267 | 0.4742 | 0.033* | |
C29 | 0.2855 (3) | 0.6946 (4) | 0.5396 (2) | 0.0212 (10) | |
C30 | 0.2263 (4) | 0.6664 (4) | 0.5774 (3) | 0.0276 (12) | |
H30 | 0.1603 | 0.6619 | 0.5532 | 0.033* | |
C31 | 0.2627 (4) | 0.6449 (4) | 0.6502 (3) | 0.0345 (13) | |
H31 | 0.2216 | 0.6261 | 0.6757 | 0.041* | |
C32 | 0.3587 (5) | 0.6506 (4) | 0.6860 (3) | 0.0387 (15) | |
H32 | 0.3836 | 0.6347 | 0.7358 | 0.046* | |
C33 | 0.4183 (4) | 0.6795 (4) | 0.6493 (3) | 0.0361 (14) | |
H33 | 0.4841 | 0.6849 | 0.6741 | 0.043* | |
C34 | 0.3826 (4) | 0.7007 (4) | 0.5763 (3) | 0.0271 (11) | |
H34 | 0.4241 | 0.7193 | 0.5511 | 0.032* | |
C35 | 0.1230 (3) | 0.6683 (4) | 0.4145 (2) | 0.0210 (10) | |
C36 | 0.1117 (4) | 0.5551 (4) | 0.4014 (3) | 0.0320 (12) | |
H36 | 0.1654 | 0.5104 | 0.4062 | 0.038* | |
C37 | 0.0238 (4) | 0.5062 (5) | 0.3814 (3) | 0.0405 (14) | |
H37 | 0.0166 | 0.4287 | 0.3720 | 0.049* | |
C38 | −0.0542 (4) | 0.5725 (6) | 0.3752 (3) | 0.0434 (16) | |
H38 | −0.1150 | 0.5399 | 0.3615 | 0.052* | |
C39 | −0.0443 (4) | 0.6833 (5) | 0.3887 (3) | 0.0382 (14) | |
H39 | −0.0980 | 0.7273 | 0.3849 | 0.046* | |
C40 | 0.0440 (3) | 0.7326 (5) | 0.4079 (3) | 0.0295 (12) | |
H40 | 0.0504 | 0.8103 | 0.4166 | 0.035* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd | 0.02109 (19) | 0.01465 (19) | 0.01659 (18) | 0.00208 (14) | 0.00463 (14) | 0.00003 (15) |
Br | 0.0432 (3) | 0.0249 (3) | 0.0245 (3) | 0.0058 (2) | 0.0025 (2) | −0.0019 (2) |
P1 | 0.0242 (6) | 0.0159 (6) | 0.0184 (6) | 0.0005 (5) | 0.0068 (5) | −0.0003 (5) |
P2 | 0.0209 (6) | 0.0172 (6) | 0.0190 (6) | 0.0009 (5) | 0.0057 (5) | −0.0001 (5) |
N1 | 0.051 (3) | 0.038 (3) | 0.023 (2) | −0.005 (2) | 0.010 (2) | −0.006 (2) |
N2 | 0.034 (3) | 0.046 (3) | 0.035 (3) | −0.009 (2) | 0.005 (2) | 0.002 (2) |
C1 | 0.026 (3) | 0.012 (2) | 0.021 (2) | −0.0011 (19) | 0.007 (2) | 0.0037 (19) |
C2 | 0.022 (3) | 0.036 (3) | 0.024 (3) | 0.001 (2) | 0.007 (2) | −0.001 (2) |
C3 | 0.043 (4) | 0.046 (4) | 0.026 (3) | −0.015 (3) | −0.001 (3) | 0.000 (3) |
C4 | 0.027 (3) | 0.016 (3) | 0.038 (3) | −0.002 (2) | 0.012 (2) | 0.003 (2) |
C5 | 0.034 (3) | 0.016 (2) | 0.017 (2) | −0.001 (2) | 0.007 (2) | −0.001 (2) |
C6 | 0.027 (3) | 0.027 (3) | 0.026 (3) | 0.000 (2) | 0.011 (2) | 0.002 (2) |
C7 | 0.031 (3) | 0.029 (3) | 0.028 (3) | −0.009 (2) | 0.005 (2) | 0.003 (2) |
C8 | 0.046 (3) | 0.031 (3) | 0.022 (3) | −0.016 (3) | 0.013 (3) | −0.008 (2) |
C9 | 0.052 (4) | 0.019 (3) | 0.030 (3) | −0.005 (2) | 0.022 (3) | −0.008 (2) |
C10 | 0.034 (3) | 0.025 (3) | 0.026 (3) | −0.001 (2) | 0.013 (2) | −0.001 (2) |
C11 | 0.024 (3) | 0.013 (2) | 0.023 (2) | 0.0009 (19) | 0.007 (2) | −0.001 (2) |
C12 | 0.028 (3) | 0.022 (3) | 0.025 (3) | 0.000 (2) | 0.006 (2) | 0.003 (2) |
C13 | 0.032 (3) | 0.031 (3) | 0.033 (3) | −0.001 (2) | 0.017 (2) | −0.003 (2) |
C14 | 0.025 (3) | 0.027 (3) | 0.040 (3) | 0.003 (2) | 0.010 (2) | 0.006 (3) |
C15 | 0.030 (3) | 0.025 (3) | 0.035 (3) | 0.005 (2) | 0.004 (2) | 0.005 (2) |
C16 | 0.032 (3) | 0.029 (3) | 0.024 (3) | 0.004 (2) | 0.011 (2) | 0.003 (2) |
C17 | 0.029 (3) | 0.020 (3) | 0.015 (2) | −0.003 (2) | 0.005 (2) | 0.001 (2) |
C18 | 0.049 (4) | 0.024 (3) | 0.029 (3) | 0.001 (3) | 0.012 (3) | −0.001 (2) |
C19 | 0.069 (4) | 0.023 (3) | 0.035 (3) | −0.013 (3) | 0.012 (3) | 0.007 (3) |
C20 | 0.049 (4) | 0.058 (4) | 0.026 (3) | −0.026 (3) | 0.013 (3) | 0.003 (3) |
C21 | 0.039 (3) | 0.062 (5) | 0.032 (3) | 0.002 (3) | 0.017 (3) | 0.010 (3) |
C22 | 0.027 (3) | 0.038 (3) | 0.025 (3) | 0.000 (2) | 0.006 (2) | 0.004 (2) |
C23 | 0.016 (2) | 0.019 (2) | 0.024 (2) | −0.0029 (19) | 0.005 (2) | −0.004 (2) |
C24 | 0.028 (3) | 0.017 (2) | 0.024 (2) | 0.005 (2) | 0.007 (2) | 0.001 (2) |
C25 | 0.032 (3) | 0.026 (3) | 0.026 (3) | −0.002 (2) | 0.012 (2) | −0.001 (2) |
C26 | 0.029 (3) | 0.025 (3) | 0.036 (3) | 0.003 (2) | 0.017 (2) | −0.005 (2) |
C27 | 0.038 (3) | 0.019 (3) | 0.034 (3) | 0.008 (2) | 0.014 (2) | 0.008 (2) |
C28 | 0.034 (3) | 0.021 (3) | 0.030 (3) | 0.001 (2) | 0.014 (2) | 0.001 (2) |
C29 | 0.027 (3) | 0.013 (2) | 0.022 (2) | 0.0030 (19) | 0.005 (2) | −0.001 (2) |
C30 | 0.042 (3) | 0.018 (3) | 0.026 (3) | −0.001 (2) | 0.015 (2) | −0.002 (2) |
C31 | 0.057 (4) | 0.026 (3) | 0.028 (3) | −0.002 (3) | 0.024 (3) | −0.004 (2) |
C32 | 0.068 (4) | 0.022 (3) | 0.021 (3) | 0.013 (3) | 0.009 (3) | 0.003 (2) |
C33 | 0.043 (3) | 0.021 (3) | 0.032 (3) | 0.015 (2) | −0.005 (3) | 0.003 (2) |
C34 | 0.030 (3) | 0.021 (3) | 0.027 (3) | 0.007 (2) | 0.005 (2) | −0.003 (2) |
C35 | 0.021 (2) | 0.021 (3) | 0.020 (2) | −0.0008 (19) | 0.007 (2) | −0.001 (2) |
C36 | 0.027 (3) | 0.029 (3) | 0.038 (3) | 0.000 (2) | 0.009 (2) | −0.004 (3) |
C37 | 0.038 (3) | 0.036 (3) | 0.046 (4) | −0.014 (3) | 0.012 (3) | −0.010 (3) |
C38 | 0.030 (3) | 0.064 (5) | 0.036 (3) | −0.023 (3) | 0.011 (3) | −0.008 (3) |
C39 | 0.024 (3) | 0.053 (4) | 0.037 (3) | 0.004 (3) | 0.009 (3) | 0.002 (3) |
C40 | 0.031 (3) | 0.033 (3) | 0.024 (3) | 0.000 (2) | 0.010 (2) | −0.005 (2) |
Pd—C1 | 2.000 (5) | C18—C19 | 1.397 (8) |
Pd—P1 | 2.3175 (13) | C18—H18 | 0.9500 |
Pd—P2 | 2.3325 (13) | C19—C20 | 1.379 (9) |
Pd—Br | 2.4907 (6) | C19—H19 | 0.9500 |
P1—C11 | 1.811 (5) | C20—C21 | 1.362 (8) |
P1—C17 | 1.818 (5) | C20—H20 | 0.9500 |
P1—C5 | 1.832 (5) | C21—C22 | 1.379 (7) |
P2—C35 | 1.817 (5) | C21—H21 | 0.9500 |
P2—C23 | 1.821 (5) | C22—H22 | 0.9500 |
P2—C29 | 1.834 (5) | C23—C28 | 1.399 (7) |
N1—C3 | 1.324 (7) | C23—C24 | 1.401 (7) |
N1—C4 | 1.351 (6) | C24—C25 | 1.379 (7) |
N2—C3 | 1.315 (7) | C24—H24 | 0.9500 |
N2—C2 | 1.335 (7) | C25—C26 | 1.376 (7) |
C1—C4 | 1.356 (7) | C25—H25 | 0.9500 |
C1—C2 | 1.381 (6) | C26—C27 | 1.382 (7) |
C2—H2 | 0.9500 | C26—H26 | 0.9500 |
C3—H3 | 0.9500 | C27—C28 | 1.369 (7) |
C4—H4 | 0.9500 | C27—H27 | 0.9500 |
C5—C10 | 1.383 (7) | C28—H28 | 0.9500 |
C5—C6 | 1.391 (7) | C29—C30 | 1.388 (7) |
C6—C7 | 1.385 (7) | C29—C34 | 1.401 (7) |
C6—H6 | 0.9500 | C30—C31 | 1.382 (7) |
C7—C8 | 1.386 (7) | C30—H30 | 0.9500 |
C7—H7 | 0.9500 | C31—C32 | 1.383 (8) |
C8—C9 | 1.369 (7) | C31—H31 | 0.9500 |
C8—H8 | 0.9500 | C32—C33 | 1.379 (8) |
C9—C10 | 1.404 (7) | C32—H32 | 0.9500 |
C9—H9 | 0.9500 | C33—C34 | 1.385 (7) |
C10—H10 | 0.9500 | C33—H33 | 0.9500 |
C11—C12 | 1.393 (7) | C34—H34 | 0.9500 |
C11—C16 | 1.394 (7) | C35—C36 | 1.386 (7) |
C12—C13 | 1.392 (7) | C35—C40 | 1.391 (7) |
C12—H12 | 0.9500 | C36—C37 | 1.382 (7) |
C13—C14 | 1.369 (7) | C36—H36 | 0.9500 |
C13—H13 | 0.9500 | C37—C38 | 1.394 (8) |
C14—C15 | 1.371 (7) | C37—H37 | 0.9500 |
C14—H14 | 0.9500 | C38—C39 | 1.358 (8) |
C15—C16 | 1.395 (7) | C38—H38 | 0.9500 |
C15—H15 | 0.9500 | C39—C40 | 1.390 (7) |
C16—H16 | 0.9500 | C39—H39 | 0.9500 |
C17—C22 | 1.389 (7) | C40—H40 | 0.9500 |
C17—C18 | 1.396 (7) | ||
C1—Pd—P1 | 91.64 (13) | C18—C17—P1 | 120.2 (4) |
C1—Pd—P2 | 89.49 (13) | C17—C18—C19 | 119.9 (5) |
P1—Pd—P2 | 171.78 (5) | C17—C18—H18 | 120.0 |
C1—Pd—Br | 174.63 (14) | C19—C18—H18 | 120.0 |
P1—Pd—Br | 87.38 (3) | C20—C19—C18 | 119.9 (5) |
P2—Pd—Br | 92.24 (3) | C20—C19—H19 | 120.1 |
C11—P1—C17 | 108.2 (2) | C18—C19—H19 | 120.1 |
C11—P1—C5 | 107.1 (2) | C21—C20—C19 | 120.2 (5) |
C17—P1—C5 | 99.9 (2) | C21—C20—H20 | 119.9 |
C11—P1—Pd | 104.60 (15) | C19—C20—H20 | 119.9 |
C17—P1—Pd | 117.19 (16) | C20—C21—C22 | 120.8 (6) |
C5—P1—Pd | 119.31 (16) | C20—C21—H21 | 119.6 |
C35—P2—C23 | 105.2 (2) | C22—C21—H21 | 119.6 |
C35—P2—C29 | 102.9 (2) | C21—C22—C17 | 120.4 (5) |
C23—P2—C29 | 104.1 (2) | C21—C22—H22 | 119.8 |
C35—P2—Pd | 112.25 (16) | C17—C22—H22 | 119.8 |
C23—P2—Pd | 114.27 (16) | C28—C23—C24 | 118.3 (4) |
C29—P2—Pd | 116.86 (15) | C28—C23—P2 | 122.2 (4) |
C3—N1—C4 | 113.8 (5) | C24—C23—P2 | 119.4 (4) |
C3—N2—C2 | 115.1 (5) | C25—C24—C23 | 120.0 (5) |
C4—C1—C2 | 114.0 (4) | C25—C24—H24 | 120.0 |
C4—C1—Pd | 126.6 (4) | C23—C24—H24 | 120.0 |
C2—C1—Pd | 119.3 (4) | C26—C25—C24 | 120.7 (5) |
N2—C2—C1 | 124.0 (5) | C26—C25—H25 | 119.6 |
N2—C2—H2 | 118.0 | C24—C25—H25 | 119.6 |
C1—C2—H2 | 118.0 | C25—C26—C27 | 119.8 (5) |
N2—C3—N1 | 127.9 (5) | C25—C26—H26 | 120.1 |
N2—C3—H3 | 116.1 | C27—C26—H26 | 120.1 |
N1—C3—H3 | 116.1 | C28—C27—C26 | 120.2 (5) |
N1—C4—C1 | 125.1 (5) | C28—C27—H27 | 119.9 |
N1—C4—H4 | 117.5 | C26—C27—H27 | 119.9 |
C1—C4—H4 | 117.5 | C27—C28—C23 | 121.0 (5) |
C10—C5—C6 | 119.4 (5) | C27—C28—H28 | 119.5 |
C10—C5—P1 | 124.0 (4) | C23—C28—H28 | 119.5 |
C6—C5—P1 | 116.5 (4) | C30—C29—C34 | 119.0 (5) |
C7—C6—C5 | 120.1 (5) | C30—C29—P2 | 121.1 (4) |
C7—C6—H6 | 119.9 | C34—C29—P2 | 119.7 (4) |
C5—C6—H6 | 119.9 | C31—C30—C29 | 120.4 (5) |
C6—C7—C8 | 120.2 (5) | C31—C30—H30 | 119.8 |
C6—C7—H7 | 119.9 | C29—C30—H30 | 119.8 |
C8—C7—H7 | 119.9 | C30—C31—C32 | 120.2 (5) |
C9—C8—C7 | 120.3 (5) | C30—C31—H31 | 119.9 |
C9—C8—H8 | 119.9 | C32—C31—H31 | 119.9 |
C7—C8—H8 | 119.9 | C33—C32—C31 | 120.0 (5) |
C8—C9—C10 | 119.9 (5) | C33—C32—H32 | 120.0 |
C8—C9—H9 | 120.1 | C31—C32—H32 | 120.0 |
C10—C9—H9 | 120.1 | C32—C33—C34 | 120.2 (5) |
C5—C10—C9 | 120.1 (5) | C32—C33—H33 | 119.9 |
C5—C10—H10 | 119.9 | C34—C33—H33 | 119.9 |
C9—C10—H10 | 119.9 | C33—C34—C29 | 120.1 (5) |
C12—C11—C16 | 118.9 (4) | C33—C34—H34 | 120.0 |
C12—C11—P1 | 119.5 (4) | C29—C34—H34 | 120.0 |
C16—C11—P1 | 120.9 (4) | C36—C35—C40 | 118.8 (5) |
C13—C12—C11 | 120.8 (5) | C36—C35—P2 | 122.4 (4) |
C13—C12—H12 | 119.6 | C40—C35—P2 | 118.7 (4) |
C11—C12—H12 | 119.6 | C37—C36—C35 | 121.2 (5) |
C14—C13—C12 | 119.5 (5) | C37—C36—H36 | 119.4 |
C14—C13—H13 | 120.2 | C35—C36—H36 | 119.4 |
C12—C13—H13 | 120.2 | C36—C37—C38 | 118.8 (6) |
C13—C14—C15 | 120.7 (5) | C36—C37—H37 | 120.6 |
C13—C14—H14 | 119.7 | C38—C37—H37 | 120.6 |
C15—C14—H14 | 119.7 | C39—C38—C37 | 120.8 (5) |
C14—C15—C16 | 120.6 (5) | C39—C38—H38 | 119.6 |
C14—C15—H15 | 119.7 | C37—C38—H38 | 119.6 |
C16—C15—H15 | 119.7 | C38—C39—C40 | 120.3 (5) |
C11—C16—C15 | 119.6 (5) | C38—C39—H39 | 119.9 |
C11—C16—H16 | 120.2 | C40—C39—H39 | 119.9 |
C15—C16—H16 | 120.2 | C39—C40—C35 | 120.0 (5) |
C22—C17—C18 | 118.8 (5) | C39—C40—H40 | 120.0 |
C22—C17—P1 | 120.6 (4) | C35—C40—H40 | 120.0 |
Experimental details
Crystal data | |
Chemical formula | [PdBr(C4H3N2)(C18H15P)2] |
Mr | 789.93 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 150 |
a, b, c (Å) | 15.0953 (10), 12.0379 (8), 19.8066 (13) |
β (°) | 109.7481 (13) |
V (Å3) | 3387.5 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.85 |
Crystal size (mm) | 0.35 × 0.20 × 0.12 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.563, 0.808 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19582, 7764, 5553 |
Rint | 0.079 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.132, 1.01 |
No. of reflections | 7764 |
No. of parameters | 415 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.87, −0.98 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP in SHELXTL (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Acknowledgements
We thank the National Science Council of the Republic of China for financial support (NSC100–2113-M-241–001-MY3).
References
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Palladium-complexes catalyzed formation of C—C bonds are some of the most important reactions in organic synthesis (Dobrzynski & Angelici, 1975). Intramolecular reductive elimination of Pd—N binuclear complex [Pd(µ-C9H6N)(µ-dppm)]2(Cl)2 yielding the organic compound 2,2'-biquinoline has been reported (Chin et al., 1988). A pyridyl-bridged palladium complex was reported as an effective precatalyst for the Suzuki cross-coupling reactions of a variety of organoboronic acids and aryl bromides (Beeby, et al., 2004). Pyrimidinyl nickel complexes have been used as catalysts for C—C coupling reactions (Steffen et al., 2005). To our knowledge, no 3,5-pyrimidinyl palladium crystal structure has been described so far.
To synthesize the pyrimidinyl metal compound, [Pd(PPh3)4] was used to react with 5-bromopyrimidine in dichloromethane at room temperature. As a result, a two triphenylphosphine displaced complex [Pd(Br)(C4H3N2)(PPh3)2] was isolated with 97% yield. The X-ray crystal structure analysis has been carried out to provide structural information.
The molecular structure of the title compound is shown in Fig. 1. The palladium atom has a distorted square planar environment, being displaced by 0.0396Å from the least-squares plane and with all angles about the Pd center within ± 2.6° of 90°. The Pd—C1 bond distance, 2.000 (5) Å, is longer than other PdII-carbon(carbonyl) distances, and similar to Pd—C(carbene) distances (Cardin et al., 1972). Two PPh3 ligands are in trans position: P1—Pd—P2, 171.78 (5)°, while the pyrimidinyl ligand and bromide are trans to each other: C1—Pd—Br, 174.63 (14)°. The phosphorus atoms approach tetrahedral geometry as expected. The largest angular deviation from ideal tetrahedral geometry is 119.31 (16)° for C5—P1—Pd. The mean Pd—N distance (> 4.25Å) indicates no bonding interaction between the nitrogen atom and the palladium metal atom. Within the pyrimidinyl ligand itself, the geometry is consistent with a significant partial double bond character in the C—C and C—N bonds. The C—N bond distances (1.315 (7) ~1.351 (6) Å) are typical for a C—N bond having partial double bond character and are certainly much shorter than the normal C—N (1.47 Å) single bond. The Pd—C1 (2.000 (5) Å), Pd—P (2.3175 (13), 2.3325 (13) Å) and Pd—Br (2.4907 (6) Å) lengths are in agreement with reported values (Yih et al., 2008, 2009).
TThe 31P{1H} NMR spectra of (I) shows a singlet resonances at δ 24.2. In the 1H NMR spectra, the 2,6-H and 4-H protons of the pyrimidinyl group exhibit two singlet resonances at δ 7.75 and at δ 8.05. The 13C{1H} NMR spectra of (I) reveals two singlets at δ 151.9 and at δ 161.4 which are assigned to the 4-C and 2,6-C carbon atom of the pyrimidinyl group. There is a triplet resonance at δ 154.4 (2JP—C = 5.91 Hz), which is assigned to the 1-C of pyrimidinyl group. In the FAB mass spectra, base peak with the typical Pd isotope distribution is in agreement with the [M+] molecular mass of (I).